Query 034904
Match_columns 79
No_of_seqs 21 out of 23
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 12:14:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034904.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034904hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lpe_A Putative transcription 73.5 1.9 6.6E-05 26.5 2.1 11 62-72 80-90 (92)
2 3ph2_B Cytochrome C6; photosyn 72.8 3.1 0.00011 22.6 2.7 19 54-72 57-75 (86)
3 3dmi_A Cytochrome C6; electron 72.3 3.2 0.00011 22.7 2.7 19 54-72 58-76 (88)
4 3cu4_A Cytochrome C family pro 72.3 3.3 0.00011 23.0 2.7 18 55-72 59-77 (85)
5 1gks_A Cytochrome C551; haloph 71.8 3 0.0001 23.3 2.5 20 53-72 52-71 (78)
6 1ls9_A Cytochrome C6; omega lo 68.3 4.4 0.00015 22.6 2.7 20 53-72 60-79 (91)
7 1c6r_A Cytochrome C6; electron 67.5 4.7 0.00016 22.2 2.7 20 53-72 58-77 (89)
8 1cyi_A Cytochrome C6, cytochro 66.7 5 0.00017 22.2 2.7 19 54-72 58-76 (90)
9 1cc5_A Cytochrome C5; electron 66.4 5.2 0.00018 22.9 2.8 23 50-72 53-77 (83)
10 1gdv_A Cytochrome C6; RED ALGA 65.9 5.4 0.00018 21.6 2.7 19 54-72 56-74 (85)
11 3dr0_A Cytochrome C6; photosyn 65.5 5 0.00017 21.9 2.5 18 55-72 64-81 (93)
12 1kx2_A Mono-heme C-type cytoch 62.3 5.9 0.0002 22.2 2.4 12 61-72 63-74 (81)
13 1f1f_A Cytochrome C6; heme, pr 62.2 6.9 0.00023 21.4 2.7 18 55-72 61-78 (89)
14 1c75_A Cytochrome C-553; heme, 58.5 8.2 0.00028 20.8 2.5 12 61-72 53-64 (71)
15 1a56_A C-551, ferricytochrome 57.7 6.7 0.00023 21.5 2.1 17 55-72 58-74 (81)
16 2zon_G Cytochrome C551; nitrit 57.5 8 0.00027 21.4 2.4 18 55-72 61-79 (87)
17 4ayb_H DNA-directed RNA polyme 57.4 5.1 0.00017 25.3 1.7 20 54-73 14-33 (84)
18 1ayg_A Cytochrome C-552; elect 57.3 8.7 0.0003 21.1 2.5 11 62-72 63-73 (80)
19 3lqv_P Splicing factor 3B subu 57.1 3 0.0001 24.0 0.6 16 61-76 21-36 (39)
20 2exv_A Cytochrome C-551; alpha 55.6 11 0.00038 20.4 2.8 11 62-72 65-75 (82)
21 2zxy_A Cytochrome C552, cytoch 55.1 6.3 0.00021 21.3 1.7 12 61-72 69-80 (87)
22 3dp5_A OMCF, cytochrome C fami 53.5 11 0.00038 22.0 2.7 21 52-72 70-91 (99)
23 1c53_A Cytochrome C553; electr 49.8 8.1 0.00028 21.2 1.6 12 61-72 62-73 (79)
24 1nz8_A Transcription antitermi 49.6 8.6 0.00029 24.0 1.8 15 59-73 99-113 (119)
25 1wve_C 4-cresol dehydrogenase 49.1 15 0.00051 20.4 2.7 17 56-72 50-67 (80)
26 1cch_A Cytochrome C551; electr 48.3 16 0.00054 19.7 2.6 11 62-72 65-75 (82)
27 2d0s_A Cytochrome C, cytochrom 48.0 12 0.00041 20.3 2.1 12 61-72 61-72 (79)
28 2fho_A Spliceosomal protein SF 44.0 5.3 0.00018 23.6 0.2 15 61-75 20-34 (47)
29 1cno_A Cytochrome C552; electr 42.6 13 0.00043 20.7 1.7 12 61-72 65-76 (87)
30 2ce0_A Cytochrome C6; chloropl 39.6 22 0.00076 19.9 2.4 12 61-72 77-88 (105)
31 1w2l_A Cytochrome oxidase subu 39.1 16 0.00053 20.3 1.7 13 60-72 80-92 (99)
32 1h32_B Cytochrome C, SOXX; ele 39.0 24 0.00083 21.3 2.7 20 53-72 111-130 (138)
33 2l4d_A SCO1/SENC family protei 37.5 17 0.00057 20.6 1.7 11 62-72 80-90 (110)
34 2ahq_A Sigma-54, RNA polymeras 36.7 21 0.0007 22.0 2.1 17 57-73 32-48 (76)
35 2zzs_A Cytochrome C554; C-type 35.5 19 0.00064 20.4 1.7 12 61-72 85-96 (103)
36 3ryc_E Stathmin-4; alpha-tubul 32.5 24 0.00081 24.6 2.1 19 54-72 34-52 (143)
37 1mz4_A Cytochrome C550; PSII a 32.4 22 0.00074 21.5 1.7 11 62-72 106-116 (137)
38 1f1c_A Cytochrome C549; dimeri 32.2 32 0.0011 20.0 2.4 12 61-72 103-114 (129)
39 1b4u_A LIGA, LIGB, protocatech 30.6 23 0.00078 24.5 1.7 15 60-74 63-77 (139)
40 4f61_I Stathmin-like domain R4 29.7 26 0.0009 26.3 2.0 29 44-72 23-51 (240)
41 1x58_A Hypothetical protein 49 29.6 29 0.001 21.0 1.9 16 59-74 7-22 (62)
42 2oug_A Transcriptional activat 29.4 22 0.00074 22.8 1.3 14 60-73 85-98 (162)
43 3cp5_A Cytochrome C; electron 29.2 27 0.00093 20.3 1.7 12 61-72 103-114 (124)
44 4f6r_C Stathmin-like domain R1 27.5 28 0.00095 22.6 1.6 20 53-72 32-51 (87)
45 1h1o_A Cytochrome C-552; elect 27.3 30 0.001 21.4 1.7 12 61-72 166-177 (183)
46 3cqb_A Probable protease HTPX 26.5 31 0.001 21.1 1.6 12 62-73 77-88 (107)
47 1ccr_A Cytochrome C; electron 26.2 33 0.0011 19.8 1.7 11 62-72 94-104 (112)
48 1hmj_A RPB5, protein (subunit 26.0 32 0.0011 21.6 1.7 19 55-73 7-25 (78)
49 1e29_A Cytochrome C549; electr 26.0 32 0.0011 21.4 1.7 11 62-72 106-116 (135)
50 2m0n_A Putative uncharacterize 25.8 36 0.0012 22.8 1.9 10 63-72 41-50 (112)
51 1m70_A Cytochrome C4; electron 25.7 33 0.0011 21.3 1.7 12 61-72 172-183 (190)
52 3ol3_A Putative uncharacterize 25.4 37 0.0013 22.5 1.9 10 63-72 44-53 (107)
53 3nkh_A Integrase; alpha-fold, 25.4 42 0.0015 21.2 2.2 16 58-73 21-36 (244)
54 1c52_A Cytochrome-C552; electr 25.3 33 0.0011 20.7 1.6 11 62-72 74-84 (131)
55 2c1d_B SOXX; sulfur oxidation, 25.1 59 0.002 19.6 2.7 11 62-72 119-129 (137)
56 3o0r_C Nitric oxide reductase 25.0 35 0.0012 20.6 1.7 10 63-72 117-126 (146)
57 1w5c_T Cytochrome C-550; photo 24.4 36 0.0012 21.4 1.7 12 61-72 131-142 (163)
58 2blf_B SORB, sulfite\:cytochro 24.2 40 0.0014 19.5 1.8 12 61-72 63-74 (81)
59 2w9k_A Cytochrome C, cytochrom 24.2 38 0.0013 19.7 1.7 11 62-72 96-106 (114)
60 1z19_A Integrase; protein-DNA 23.5 53 0.0018 20.6 2.3 15 59-73 103-117 (283)
61 3ff5_A PEX14P, peroxisomal bio 23.4 40 0.0014 19.9 1.7 12 61-72 40-51 (54)
62 2b67_A COG0778: nitroreductase 23.1 43 0.0015 21.0 1.9 13 61-73 22-34 (204)
63 3u85_B Histone-lysine N-methyl 23.1 38 0.0013 17.2 1.3 15 6-20 2-16 (21)
64 3gfa_A Putative nitroreductase 23.0 48 0.0016 20.7 2.0 14 61-74 19-32 (198)
65 2aje_A Telomere repeat-binding 22.8 44 0.0015 21.6 1.9 17 58-74 11-27 (105)
66 2lky_A Uncharacterized protein 22.8 43 0.0015 22.4 1.9 12 61-72 39-50 (112)
67 1ywq_A Nitroreductase family p 21.8 46 0.0016 20.5 1.8 14 61-74 25-38 (200)
68 2dn0_A Zinc fingers and homeob 21.6 81 0.0028 17.9 2.7 12 60-71 12-23 (76)
69 3eo8_A BLUB-like flavoprotein; 21.4 53 0.0018 20.8 2.0 13 61-73 20-32 (219)
70 2ifa_A Hypothetical protein SM 21.3 48 0.0016 20.8 1.8 14 61-74 21-34 (208)
71 3gna_A RAG-1, V(D)J recombinat 20.9 24 0.00082 23.5 0.3 13 65-77 80-92 (96)
72 1qn2_A Cytochrome CH; electron 20.9 49 0.0017 18.7 1.7 11 62-72 83-93 (100)
73 1nox_A NADH oxidase; flavoenzy 20.8 56 0.0019 20.4 2.0 13 61-73 26-38 (205)
74 1vfr_A NAD(P)H\:FMN oxidoreduc 20.7 51 0.0018 20.7 1.9 13 61-73 22-34 (218)
75 1icr_A Oxygen-insensitive NAD( 20.0 54 0.0019 20.5 1.9 13 61-73 20-32 (217)
No 1
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=73.50 E-value=1.9 Score=26.53 Aligned_cols=11 Identities=27% Similarity=0.576 Sum_probs=10.6
Q ss_pred cCCHHHHHHHH
Q 034904 62 PVSNREIEAIM 72 (79)
Q Consensus 62 pvS~~EIEAIl 72 (79)
||+++||+.||
T Consensus 80 pl~~~Ev~~il 90 (92)
T 3lpe_A 80 TIAIEEIEPLL 90 (92)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHh
Confidence 99999999997
No 2
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=72.83 E-value=3.1 Score=22.61 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=14.2
Q ss_pred ccCCCCcccCCHHHHHHHH
Q 034904 54 ASLQPKRTPVSNREIEAIM 72 (79)
Q Consensus 54 ASlqPkRtpvS~~EIEAIl 72 (79)
..+.+-...||++||++|+
T Consensus 57 ~~Mp~~~~~ls~~ei~~l~ 75 (86)
T 3ph2_B 57 AGMPAFKGRLTDDQIAAVA 75 (86)
T ss_dssp TTBCCCTTTSCHHHHHHHH
T ss_pred CCCCCcccCCCHHHHHHHH
Confidence 3455555679999999986
No 3
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=72.35 E-value=3.2 Score=22.75 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=14.1
Q ss_pred ccCCCCcccCCHHHHHHHH
Q 034904 54 ASLQPKRTPVSNREIEAIM 72 (79)
Q Consensus 54 ASlqPkRtpvS~~EIEAIl 72 (79)
..+.+....||++||++|+
T Consensus 58 ~~Mp~~~~~ls~~ei~~l~ 76 (88)
T 3dmi_A 58 NAMPAFGGRLSDEEIANVA 76 (88)
T ss_dssp TTBCCCTTTSCHHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHH
Confidence 3455555579999999986
No 4
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=72.28 E-value=3.3 Score=22.95 Aligned_cols=18 Identities=6% Similarity=-0.040 Sum_probs=13.7
Q ss_pred cCCCCcc-cCCHHHHHHHH
Q 034904 55 SLQPKRT-PVSNREIEAIM 72 (79)
Q Consensus 55 SlqPkRt-pvS~~EIEAIl 72 (79)
.+.+-.. .||++||++|.
T Consensus 59 ~Mp~~~~~~ls~~ei~~l~ 77 (85)
T 3cu4_A 59 GMPAFGEAMIPPADALKIG 77 (85)
T ss_dssp TSCCCCTTTSCHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHH
Confidence 3555555 79999999986
No 5
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=71.77 E-value=3 Score=23.28 Aligned_cols=20 Identities=5% Similarity=0.160 Sum_probs=14.6
Q ss_pred cccCCCCcccCCHHHHHHHH
Q 034904 53 KASLQPKRTPVSNREIEAIM 72 (79)
Q Consensus 53 kASlqPkRtpvS~~EIEAIl 72 (79)
+..+.+....||++||++|.
T Consensus 52 ~~~Mp~~~~~Lsd~ei~~l~ 71 (78)
T 1gks_A 52 KGAMPAYDGRADREDLVKAI 71 (78)
T ss_dssp BTTBCCCBTTBCHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHH
Confidence 34455555579999999985
No 6
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=68.25 E-value=4.4 Score=22.60 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=14.5
Q ss_pred cccCCCCcccCCHHHHHHHH
Q 034904 53 KASLQPKRTPVSNREIEAIM 72 (79)
Q Consensus 53 kASlqPkRtpvS~~EIEAIl 72 (79)
...+.+-...||++||++|.
T Consensus 60 ~~~Mp~~~~~ls~~ei~~l~ 79 (91)
T 1ls9_A 60 KGAMPAWADRLDEDDIEAVS 79 (91)
T ss_dssp BTTBCCCTTTSCHHHHHHHH
T ss_pred cCCCcchhhhCCHHHHHHHH
Confidence 33455555579999999985
No 7
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=67.52 E-value=4.7 Score=22.19 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=14.7
Q ss_pred cccCCCCcccCCHHHHHHHH
Q 034904 53 KASLQPKRTPVSNREIEAIM 72 (79)
Q Consensus 53 kASlqPkRtpvS~~EIEAIl 72 (79)
...+.+-...||++||++|+
T Consensus 58 ~~~Mp~~~~~ls~~ei~~l~ 77 (89)
T 1c6r_A 58 KGAMPAWSGTLDDDEIAAVA 77 (89)
T ss_dssp BTTBCCCTTTSCHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHH
Confidence 34455555679999999986
No 8
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=66.66 E-value=5 Score=22.23 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=14.0
Q ss_pred ccCCCCcccCCHHHHHHHH
Q 034904 54 ASLQPKRTPVSNREIEAIM 72 (79)
Q Consensus 54 ASlqPkRtpvS~~EIEAIl 72 (79)
..+.+-...||++||++|+
T Consensus 58 ~~Mp~~~~~ls~~ei~~l~ 76 (90)
T 1cyi_A 58 GAMPAWADRLSEEEIQAVA 76 (90)
T ss_dssp TTBCCCTTTSCHHHHHHHH
T ss_pred CCCCcccccCCHHHHHHHH
Confidence 3455555579999999986
No 9
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=66.38 E-value=5.2 Score=22.93 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=16.0
Q ss_pred cCccccCCCCcc--cCCHHHHHHHH
Q 034904 50 VGGKASLQPKRT--PVSNREIEAIM 72 (79)
Q Consensus 50 vgGkASlqPkRt--pvS~~EIEAIl 72 (79)
.-|...+.+... .||++||++|+
T Consensus 53 ~~G~~~MP~~~~~~~Lsd~ei~~v~ 77 (83)
T 1cc5_A 53 LSGLNAMPPKGTCADCSDDELKAAI 77 (83)
T ss_dssp HHCBTTBCSSSSCSSCCHHHHHHHH
T ss_pred HcCccCCCCCCCCCCCCHHHHHHHH
Confidence 344445656544 69999999986
No 10
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=65.93 E-value=5.4 Score=21.58 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=13.7
Q ss_pred ccCCCCcccCCHHHHHHHH
Q 034904 54 ASLQPKRTPVSNREIEAIM 72 (79)
Q Consensus 54 ASlqPkRtpvS~~EIEAIl 72 (79)
..+.+-...||++||++|+
T Consensus 56 ~~Mp~~~~~ls~~ei~~l~ 74 (85)
T 1gdv_A 56 NAMPAFGGRLVDEDIEDAA 74 (85)
T ss_dssp TTBCCCTTTSCHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHH
Confidence 3444444579999999986
No 11
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=65.47 E-value=5 Score=21.89 Aligned_cols=18 Identities=11% Similarity=0.226 Sum_probs=13.5
Q ss_pred cCCCCcccCCHHHHHHHH
Q 034904 55 SLQPKRTPVSNREIEAIM 72 (79)
Q Consensus 55 SlqPkRtpvS~~EIEAIl 72 (79)
.+.+-...||++||++|+
T Consensus 64 ~Mp~~~~~ls~~ei~~l~ 81 (93)
T 3dr0_A 64 AMPAFGGRLSDADIANVA 81 (93)
T ss_dssp TBCCCBTTBCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHH
Confidence 444444679999999986
No 12
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=62.29 E-value=5.9 Score=22.20 Aligned_cols=12 Identities=17% Similarity=0.368 Sum_probs=10.4
Q ss_pred ccCCHHHHHHHH
Q 034904 61 TPVSNREIEAIM 72 (79)
Q Consensus 61 tpvS~~EIEAIl 72 (79)
..||++||++|.
T Consensus 63 ~~Lsd~ei~~l~ 74 (81)
T 1kx2_A 63 TDCTDEDYKAAI 74 (81)
T ss_dssp SSCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 379999999985
No 13
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=62.15 E-value=6.9 Score=21.40 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=13.5
Q ss_pred cCCCCcccCCHHHHHHHH
Q 034904 55 SLQPKRTPVSNREIEAIM 72 (79)
Q Consensus 55 SlqPkRtpvS~~EIEAIl 72 (79)
.+.+-...||++||++|+
T Consensus 61 ~Mp~~~~~ls~~ei~~l~ 78 (89)
T 1f1f_A 61 AMPGFNGRLSPLQIEDVA 78 (89)
T ss_dssp TBCCCTTTSCHHHHHHHH
T ss_pred CCCccccCCCHHHHHHHH
Confidence 344545579999999986
No 14
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=58.46 E-value=8.2 Score=20.79 Aligned_cols=12 Identities=25% Similarity=0.210 Sum_probs=10.7
Q ss_pred ccCCHHHHHHHH
Q 034904 61 TPVSNREIEAIM 72 (79)
Q Consensus 61 tpvS~~EIEAIl 72 (79)
..||++||++|.
T Consensus 53 ~~ls~~ei~~l~ 64 (71)
T 1c75_A 53 GIAKGAEAEAVA 64 (71)
T ss_dssp CSSCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 679999999985
No 15
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=57.73 E-value=6.7 Score=21.51 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=13.0
Q ss_pred cCCCCcccCCHHHHHHHH
Q 034904 55 SLQPKRTPVSNREIEAIM 72 (79)
Q Consensus 55 SlqPkRtpvS~~EIEAIl 72 (79)
.+.+- ..||++||++|.
T Consensus 58 ~Mp~~-~~Ls~~ei~~l~ 74 (81)
T 1a56_A 58 PMPPN-VNVSDADAKALA 74 (81)
T ss_dssp CBCSC-CSSSSHHHHHHH
T ss_pred CCCCC-CCCCHHHHHHHH
Confidence 34444 679999999985
No 16
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=57.46 E-value=8 Score=21.39 Aligned_cols=18 Identities=11% Similarity=0.361 Sum_probs=13.0
Q ss_pred cCCCCcc-cCCHHHHHHHH
Q 034904 55 SLQPKRT-PVSNREIEAIM 72 (79)
Q Consensus 55 SlqPkRt-pvS~~EIEAIl 72 (79)
.+.+-.. .||++||++|+
T Consensus 61 ~Mp~~~~~~ls~~ei~~l~ 79 (87)
T 2zon_G 61 AMPPRGGTAADEATLRAAV 79 (87)
T ss_dssp TBCGGGGCCCCHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHH
Confidence 3444444 79999999986
No 17
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=57.39 E-value=5.1 Score=25.32 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=17.6
Q ss_pred ccCCCCcccCCHHHHHHHHh
Q 034904 54 ASLQPKRTPVSNREIEAIMM 73 (79)
Q Consensus 54 ASlqPkRtpvS~~EIEAIll 73 (79)
-.|.||-..||+||.+.+|-
T Consensus 14 H~LVPkH~vLs~eE~~~ll~ 33 (84)
T 4ayb_H 14 HYLVPKHEVLSIDEAYKILK 33 (84)
T ss_dssp SSSCCEEEECCHHHHHHHHH
T ss_pred cccCCCeEECCHHHHHHHHH
Confidence 46899999999999999873
No 18
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=57.32 E-value=8.7 Score=21.06 Aligned_cols=11 Identities=18% Similarity=0.350 Sum_probs=10.1
Q ss_pred cCCHHHHHHHH
Q 034904 62 PVSNREIEAIM 72 (79)
Q Consensus 62 pvS~~EIEAIl 72 (79)
.||++||++|.
T Consensus 63 ~Lsd~ei~~l~ 73 (80)
T 1ayg_A 63 NVTDAEAKQLA 73 (80)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 79999999986
No 19
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=57.14 E-value=3 Score=24.01 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=13.3
Q ss_pred ccCCHHHHHHHHhccc
Q 034904 61 TPVSNREIEAIMMGFT 76 (79)
Q Consensus 61 tpvS~~EIEAIllGG~ 76 (79)
.|+|+||+.++|=.|-
T Consensus 21 rpltDEeLD~mLP~GY 36 (39)
T 3lqv_P 21 RPLSDEELDAMFPEGY 36 (39)
T ss_dssp CCCCHHHHHHTCCSSE
T ss_pred CCCCHHHHHHhCCCCc
Confidence 4999999999987653
No 20
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=55.65 E-value=11 Score=20.39 Aligned_cols=11 Identities=27% Similarity=0.456 Sum_probs=10.1
Q ss_pred cCCHHHHHHHH
Q 034904 62 PVSNREIEAIM 72 (79)
Q Consensus 62 pvS~~EIEAIl 72 (79)
.||++||++|.
T Consensus 65 ~ls~~ei~~l~ 75 (82)
T 2exv_A 65 AVSDDEAQTLA 75 (82)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 79999999986
No 21
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=55.15 E-value=6.3 Score=21.29 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=10.5
Q ss_pred ccCCHHHHHHHH
Q 034904 61 TPVSNREIEAIM 72 (79)
Q Consensus 61 tpvS~~EIEAIl 72 (79)
..||++||++|+
T Consensus 69 ~~ls~~ei~~l~ 80 (87)
T 2zxy_A 69 KGLSDAELKALA 80 (87)
T ss_dssp GGCCHHHHHHHH
T ss_pred cCCCHHHHHHHH
Confidence 579999999986
No 22
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=53.51 E-value=11 Score=22.03 Aligned_cols=21 Identities=5% Similarity=-0.072 Sum_probs=15.0
Q ss_pred ccccCCCCcc-cCCHHHHHHHH
Q 034904 52 GKASLQPKRT-PVSNREIEAIM 72 (79)
Q Consensus 52 GkASlqPkRt-pvS~~EIEAIl 72 (79)
|...+.+-.. -||++||++|.
T Consensus 70 G~~~MP~~~~~~Lsd~ei~~l~ 91 (99)
T 3dp5_A 70 PGPGMPAFGEAMIPPADALKIG 91 (99)
T ss_dssp CCTTSCCCCTTTSCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHH
Confidence 3444555554 69999999985
No 23
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=49.85 E-value=8.1 Score=21.24 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=10.4
Q ss_pred ccCCHHHHHHHH
Q 034904 61 TPVSNREIEAIM 72 (79)
Q Consensus 61 tpvS~~EIEAIl 72 (79)
..||++||++|.
T Consensus 62 ~~Ls~~ei~~l~ 73 (79)
T 1c53_A 62 KRYSDEEMKAMA 73 (79)
T ss_pred hhCCHHHHHHHH
Confidence 469999999986
No 24
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=49.60 E-value=8.6 Score=23.97 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=12.5
Q ss_pred CcccCCHHHHHHHHh
Q 034904 59 KRTPVSNREIEAIMM 73 (79)
Q Consensus 59 kRtpvS~~EIEAIll 73 (79)
+=+||+++||+.|+.
T Consensus 99 ~P~pi~~~ev~~i~~ 113 (119)
T 1nz8_A 99 RPVPLSPDEVRHILE 113 (119)
T ss_dssp SSCBCCHHHHHHHHH
T ss_pred EEeECCHHHHHHHHH
Confidence 347999999999974
No 25
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=49.14 E-value=15 Score=20.40 Aligned_cols=17 Identities=6% Similarity=0.173 Sum_probs=12.4
Q ss_pred CCCCc-ccCCHHHHHHHH
Q 034904 56 LQPKR-TPVSNREIEAIM 72 (79)
Q Consensus 56 lqPkR-tpvS~~EIEAIl 72 (79)
+.+-. ..||++||++|.
T Consensus 50 Mp~~~~~~ls~~ei~~l~ 67 (80)
T 1wve_C 50 MPAFPASYVDDESLTQVA 67 (80)
T ss_dssp BCCCCTTTSCHHHHHHHH
T ss_pred CCCCcccCCCHHHHHHHH
Confidence 44432 479999999985
No 26
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=48.28 E-value=16 Score=19.66 Aligned_cols=11 Identities=27% Similarity=0.579 Sum_probs=10.1
Q ss_pred cCCHHHHHHHH
Q 034904 62 PVSNREIEAIM 72 (79)
Q Consensus 62 pvS~~EIEAIl 72 (79)
.||++||++|+
T Consensus 65 ~ls~~ei~~l~ 75 (82)
T 1cch_A 65 PVTEEEAKILA 75 (82)
T ss_dssp SCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 79999999986
No 27
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=47.95 E-value=12 Score=20.35 Aligned_cols=12 Identities=33% Similarity=0.562 Sum_probs=10.6
Q ss_pred ccCCHHHHHHHH
Q 034904 61 TPVSNREIEAIM 72 (79)
Q Consensus 61 tpvS~~EIEAIl 72 (79)
..||++||++|.
T Consensus 61 ~~Ls~~ei~~l~ 72 (79)
T 2d0s_A 61 PQVAEADIEKIV 72 (79)
T ss_dssp TTSCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 479999999986
No 28
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.03 E-value=5.3 Score=23.62 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=12.3
Q ss_pred ccCCHHHHHHHHhcc
Q 034904 61 TPVSNREIEAIMMGF 75 (79)
Q Consensus 61 tpvS~~EIEAIllGG 75 (79)
.|||+||+.+||=-|
T Consensus 20 rpltDEeLD~~LP~G 34 (47)
T 2fho_A 20 RPLSDEELDAMFPEG 34 (47)
T ss_dssp CCSCTTHHHHHSCTT
T ss_pred CCCCHHHHHHhCCCC
Confidence 499999999998533
No 29
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=42.64 E-value=13 Score=20.70 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=10.4
Q ss_pred ccCCHHHHHHHH
Q 034904 61 TPVSNREIEAIM 72 (79)
Q Consensus 61 tpvS~~EIEAIl 72 (79)
..||++||++|+
T Consensus 65 ~~ls~~ei~~l~ 76 (87)
T 1cno_A 65 TALSDADIANLA 76 (87)
T ss_dssp TTCCHHHHHHHH
T ss_pred hhCCHHHHHHHH
Confidence 469999999986
No 30
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=39.64 E-value=22 Score=19.94 Aligned_cols=12 Identities=17% Similarity=0.376 Sum_probs=10.5
Q ss_pred ccCCHHHHHHHH
Q 034904 61 TPVSNREIEAIM 72 (79)
Q Consensus 61 tpvS~~EIEAIl 72 (79)
..||++||++|+
T Consensus 77 ~~ls~~ei~~l~ 88 (105)
T 2ce0_A 77 PRLQDEEIKLLA 88 (105)
T ss_dssp CCBCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 469999999986
No 31
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=39.07 E-value=16 Score=20.30 Aligned_cols=13 Identities=31% Similarity=0.595 Sum_probs=10.9
Q ss_pred cccCCHHHHHHHH
Q 034904 60 RTPVSNREIEAIM 72 (79)
Q Consensus 60 RtpvS~~EIEAIl 72 (79)
...||++||++|+
T Consensus 80 ~~~ls~~ei~~l~ 92 (99)
T 1w2l_A 80 YASLSEREVAALI 92 (99)
T ss_dssp GGGCCHHHHHHHH
T ss_pred cccCCHHHHHHHH
Confidence 4469999999986
No 32
>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1 PDB: 1h31_B* 1h33_B* 2oz1_B*
Probab=39.04 E-value=24 Score=21.32 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=14.0
Q ss_pred cccCCCCcccCCHHHHHHHH
Q 034904 53 KASLQPKRTPVSNREIEAIM 72 (79)
Q Consensus 53 kASlqPkRtpvS~~EIEAIl 72 (79)
...+.+--..||++||++|+
T Consensus 111 ~~~M~~~~~~Ls~~ei~~l~ 130 (138)
T 1h32_B 111 KPIEGEIRPLMTAGQIEDVV 130 (138)
T ss_dssp CBCCSCCCCSSCHHHHHHHH
T ss_pred cccCcccccCCCHHHHHHHH
Confidence 33344444579999999986
No 33
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=37.51 E-value=17 Score=20.55 Aligned_cols=11 Identities=18% Similarity=0.531 Sum_probs=9.7
Q ss_pred cCCHHHHHHHH
Q 034904 62 PVSNREIEAIM 72 (79)
Q Consensus 62 pvS~~EIEAIl 72 (79)
.||++||++|+
T Consensus 80 ~Ls~~ei~~l~ 90 (110)
T 2l4d_A 80 RLGDAEVSALI 90 (110)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 49999999986
No 34
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=36.70 E-value=21 Score=22.04 Aligned_cols=17 Identities=41% Similarity=0.669 Sum_probs=14.3
Q ss_pred CCCcccCCHHHHHHHHh
Q 034904 57 QPKRTPVSNREIEAIMM 73 (79)
Q Consensus 57 qPkRtpvS~~EIEAIll 73 (79)
-.++.||||++|-.+|-
T Consensus 32 Ed~~kPlSD~~I~~~L~ 48 (76)
T 2ahq_A 32 EDKRKPYSDQEIANILK 48 (76)
T ss_dssp CCSSSCCCHHHHHHHHT
T ss_pred cCCCCCCCHHHHHHHHH
Confidence 36789999999998874
No 35
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=35.49 E-value=19 Score=20.42 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=10.3
Q ss_pred ccCCHHHHHHHH
Q 034904 61 TPVSNREIEAIM 72 (79)
Q Consensus 61 tpvS~~EIEAIl 72 (79)
..||++||++|.
T Consensus 85 ~~ls~~ei~~l~ 96 (103)
T 2zzs_A 85 SLLSDDDIANLA 96 (103)
T ss_dssp TTCCHHHHHHHH
T ss_pred hhCCHHHHHHHH
Confidence 469999999986
No 36
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=32.47 E-value=24 Score=24.60 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=11.6
Q ss_pred ccCCCCcccCCHHHHHHHH
Q 034904 54 ASLQPKRTPVSNREIEAIM 72 (79)
Q Consensus 54 ASlqPkRtpvS~~EIEAIl 72 (79)
...-|+|..+|-+||+-=|
T Consensus 34 ~~s~P~~k~~SleEIqkKL 52 (143)
T 3ryc_E 34 NASLPRRRDPSLEEIQKKL 52 (143)
T ss_dssp -----CCCCCCHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHH
Confidence 3346788899999998543
No 37
>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*
Probab=32.42 E-value=22 Score=21.53 Aligned_cols=11 Identities=18% Similarity=0.465 Sum_probs=9.8
Q ss_pred cCCHHHHHHHH
Q 034904 62 PVSNREIEAIM 72 (79)
Q Consensus 62 pvS~~EIEAIl 72 (79)
.||++||++|.
T Consensus 106 ~Lsd~ei~ala 116 (137)
T 1mz4_A 106 NLTEKDLVAIA 116 (137)
T ss_dssp TCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 49999999986
No 38
>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1
Probab=32.18 E-value=32 Score=20.03 Aligned_cols=12 Identities=8% Similarity=0.271 Sum_probs=10.5
Q ss_pred ccCCHHHHHHHH
Q 034904 61 TPVSNREIEAIM 72 (79)
Q Consensus 61 tpvS~~EIEAIl 72 (79)
..||++||++|+
T Consensus 103 ~~Ls~~ei~~l~ 114 (129)
T 1f1c_A 103 RNISEDDLYNVA 114 (129)
T ss_dssp SSCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 479999999986
No 39
>1b4u_A LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: a.88.1.1 PDB: 1bou_A
Probab=30.61 E-value=23 Score=24.45 Aligned_cols=15 Identities=7% Similarity=0.054 Sum_probs=12.8
Q ss_pred cccCCHHHHHHHHhc
Q 034904 60 RTPVSNREIEAIMMG 74 (79)
Q Consensus 60 RtpvS~~EIEAIllG 74 (79)
+-.||+||++||+-|
T Consensus 63 ~~gLTeEEr~AV~~r 77 (139)
T 1b4u_A 63 EWNLTPAAKAAVLAR 77 (139)
T ss_dssp TTTCCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHcC
Confidence 458999999999865
No 40
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=29.73 E-value=26 Score=26.26 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=14.0
Q ss_pred CCCccccCccccCCCCcccCCHHHHHHHH
Q 034904 44 APANTAVGGKASLQPKRTPVSNREIEAIM 72 (79)
Q Consensus 44 ~p~~tavgGkASlqPkRtpvS~~EIEAIl 72 (79)
||+..++.-.....|++..+|-+||+-=|
T Consensus 23 pps~~~~~~~~~s~P~kk~~SleEIqkKL 51 (240)
T 4f61_I 23 PPSFDGVPEFNASLPRRRDPSLEEIQKKL 51 (240)
T ss_dssp CCSSCSSCCCC------CCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence 34443332233456888899999998543
No 41
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=29.60 E-value=29 Score=21.01 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=14.2
Q ss_pred CcccCCHHHHHHHHhc
Q 034904 59 KRTPVSNREIEAIMMG 74 (79)
Q Consensus 59 kRtpvS~~EIEAIllG 74 (79)
.|.+.|+||.|+++-|
T Consensus 7 ~r~~WT~EE~~~L~~g 22 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHG 22 (62)
T ss_dssp CSSSCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 6889999999999866
No 42
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=29.39 E-value=22 Score=22.78 Aligned_cols=14 Identities=14% Similarity=0.157 Sum_probs=12.1
Q ss_pred cccCCHHHHHHHHh
Q 034904 60 RTPVSNREIEAIMM 73 (79)
Q Consensus 60 RtpvS~~EIEAIll 73 (79)
=+||+++||+.|+.
T Consensus 85 p~pi~~~ei~~i~~ 98 (162)
T 2oug_A 85 PAIVPSAVIHQLSV 98 (162)
T ss_dssp SCCCCCHHHHHHHH
T ss_pred eeEcCHHHHHHHHh
Confidence 47999999999975
No 43
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}
Probab=29.24 E-value=27 Score=20.32 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=10.3
Q ss_pred ccCCHHHHHHHH
Q 034904 61 TPVSNREIEAIM 72 (79)
Q Consensus 61 tpvS~~EIEAIl 72 (79)
..||++||++|+
T Consensus 103 ~~Ls~~ei~~l~ 114 (124)
T 3cp5_A 103 MALSEEQARAIL 114 (124)
T ss_dssp CCCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 379999999986
No 44
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene}
Probab=27.48 E-value=28 Score=22.61 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=7.9
Q ss_pred cccCCCCcccCCHHHHHHHH
Q 034904 53 KASLQPKRTPVSNREIEAIM 72 (79)
Q Consensus 53 kASlqPkRtpvS~~EIEAIl 72 (79)
.....|++..+|-+||+-=|
T Consensus 32 ~~~s~Pkkk~~SleeIqkKL 51 (87)
T 4f6r_C 32 FNASLPRRRDPSLEEIQKKL 51 (87)
T ss_dssp ----------CTHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHH
Confidence 34557888899999997533
No 45
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4
Probab=27.29 E-value=30 Score=21.38 Aligned_cols=12 Identities=0% Similarity=0.238 Sum_probs=10.1
Q ss_pred ccCCHHHHHHHH
Q 034904 61 TPVSNREIEAIM 72 (79)
Q Consensus 61 tpvS~~EIEAIl 72 (79)
..||++||++|.
T Consensus 166 ~~Ls~~ei~~l~ 177 (183)
T 1h1o_A 166 KNITVAQMKDVA 177 (183)
T ss_dssp TTCCHHHHHHHH
T ss_pred HhCCHHHHHHHH
Confidence 359999999986
No 46
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=26.50 E-value=31 Score=21.13 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=10.0
Q ss_pred cCCHHHHHHHHh
Q 034904 62 PVSNREIEAIMM 73 (79)
Q Consensus 62 pvS~~EIEAIll 73 (79)
-++++||+|||.
T Consensus 77 ~l~~~El~aVla 88 (107)
T 3cqb_A 77 NMTRDEAEAVLA 88 (107)
T ss_dssp HSCHHHHHHHHH
T ss_pred hCCHHHHHHHHH
Confidence 469999999984
No 47
>1ccr_A Cytochrome C; electron transport(cytochrome); HET: M3L HEM; 1.50A {Oryza sativa} SCOP: a.3.1.1
Probab=26.24 E-value=33 Score=19.81 Aligned_cols=11 Identities=9% Similarity=0.148 Sum_probs=9.3
Q ss_pred cCCHHHHHHHH
Q 034904 62 PVSNREIEAIM 72 (79)
Q Consensus 62 pvS~~EIEAIl 72 (79)
-+|++||++|+
T Consensus 94 ~ls~~ei~~l~ 104 (112)
T 1ccr_A 94 LXKPQERADLI 104 (112)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 35999999986
No 48
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=26.04 E-value=32 Score=21.63 Aligned_cols=19 Identities=37% Similarity=0.529 Sum_probs=16.9
Q ss_pred cCCCCcccCCHHHHHHHHh
Q 034904 55 SLQPKRTPVSNREIEAIMM 73 (79)
Q Consensus 55 SlqPkRtpvS~~EIEAIll 73 (79)
.|.||-.-||+||.+.+|-
T Consensus 7 ~LVPkH~iLs~eEk~~lL~ 25 (78)
T 1hmj_A 7 ILVPKHEIVPKEEVEEILK 25 (78)
T ss_pred eeCCCeEECCHHHHHHHHH
Confidence 5889999999999999873
No 49
>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1
Probab=26.00 E-value=32 Score=21.37 Aligned_cols=11 Identities=9% Similarity=0.154 Sum_probs=9.7
Q ss_pred cCCHHHHHHHH
Q 034904 62 PVSNREIEAIM 72 (79)
Q Consensus 62 pvS~~EIEAIl 72 (79)
.||++||++|.
T Consensus 106 ~Lsd~ei~~la 116 (135)
T 1e29_A 106 NYTEDDIFDVA 116 (135)
T ss_dssp TCCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 59999999985
No 50
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=25.83 E-value=36 Score=22.84 Aligned_cols=10 Identities=0% Similarity=0.527 Sum_probs=9.1
Q ss_pred CCHHHHHHHH
Q 034904 63 VSNREIEAIM 72 (79)
Q Consensus 63 vS~~EIEAIl 72 (79)
|||+||.+|.
T Consensus 41 LtdeEV~~Va 50 (112)
T 2m0n_A 41 LTEEQVQEVV 50 (112)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999999885
No 51
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*
Probab=25.65 E-value=33 Score=21.29 Aligned_cols=12 Identities=42% Similarity=0.684 Sum_probs=10.2
Q ss_pred ccCCHHHHHHHH
Q 034904 61 TPVSNREIEAIM 72 (79)
Q Consensus 61 tpvS~~EIEAIl 72 (79)
..||++||++|+
T Consensus 172 ~~Ls~~ei~~l~ 183 (190)
T 1m70_A 172 AKLSNKDIEALS 183 (190)
T ss_dssp TTCCHHHHHHHH
T ss_pred HhCCHHHHHHHH
Confidence 469999999986
No 52
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=25.40 E-value=37 Score=22.53 Aligned_cols=10 Identities=10% Similarity=0.222 Sum_probs=9.0
Q ss_pred CCHHHHHHHH
Q 034904 63 VSNREIEAIM 72 (79)
Q Consensus 63 vS~~EIEAIl 72 (79)
|||+||.+|.
T Consensus 44 Ltddev~~Va 53 (107)
T 3ol3_A 44 LTEDEVVRAA 53 (107)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999999886
No 53
>3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2, protei structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=25.36 E-value=42 Score=21.16 Aligned_cols=16 Identities=25% Similarity=0.301 Sum_probs=12.8
Q ss_pred CCcccCCHHHHHHHHh
Q 034904 58 PKRTPVSNREIEAIMM 73 (79)
Q Consensus 58 PkRtpvS~~EIEAIll 73 (79)
+++..+|++||++|+-
T Consensus 21 ~~~~~lt~~e~~~l~~ 36 (244)
T 3nkh_A 21 QSNAYLELNEIESIIK 36 (244)
T ss_dssp CCSCCCCHHHHHHHHH
T ss_pred cccccCCHHHHHHHHH
Confidence 4556999999999873
No 54
>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability; HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A*
Probab=25.26 E-value=33 Score=20.73 Aligned_cols=11 Identities=27% Similarity=0.613 Sum_probs=10.0
Q ss_pred cCCHHHHHHHH
Q 034904 62 PVSNREIEAIM 72 (79)
Q Consensus 62 pvS~~EIEAIl 72 (79)
.||++||++|+
T Consensus 74 ~Lsd~ei~~l~ 84 (131)
T 1c52_A 74 QLKDEEIAAVL 84 (131)
T ss_dssp TSCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 79999999986
No 55
>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus}
Probab=25.08 E-value=59 Score=19.61 Aligned_cols=11 Identities=18% Similarity=0.456 Sum_probs=10.0
Q ss_pred cCCHHHHHHHH
Q 034904 62 PVSNREIEAIM 72 (79)
Q Consensus 62 pvS~~EIEAIl 72 (79)
.||++||++|+
T Consensus 119 ~Ls~~ei~~l~ 129 (137)
T 2c1d_B 119 ILNAQQIEDVV 129 (137)
T ss_dssp SSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 79999999986
No 56
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=24.96 E-value=35 Score=20.63 Aligned_cols=10 Identities=10% Similarity=0.441 Sum_probs=9.2
Q ss_pred CCHHHHHHHH
Q 034904 63 VSNREIEAIM 72 (79)
Q Consensus 63 vS~~EIEAIl 72 (79)
||++||++|.
T Consensus 117 Ls~~ei~~l~ 126 (146)
T 3o0r_C 117 LSEGQVDDLA 126 (146)
T ss_dssp CCHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 9999999985
No 57
>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1
Probab=24.38 E-value=36 Score=21.38 Aligned_cols=12 Identities=17% Similarity=0.421 Sum_probs=10.4
Q ss_pred ccCCHHHHHHHH
Q 034904 61 TPVSNREIEAIM 72 (79)
Q Consensus 61 tpvS~~EIEAIl 72 (79)
..||++||++|.
T Consensus 131 ~~Lsd~ei~~la 142 (163)
T 1w5c_T 131 RNLTEKDLVAIA 142 (163)
T ss_dssp TTCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 469999999985
No 58
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Probab=24.24 E-value=40 Score=19.46 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=10.3
Q ss_pred ccCCHHHHHHHH
Q 034904 61 TPVSNREIEAIM 72 (79)
Q Consensus 61 tpvS~~EIEAIl 72 (79)
.++|++|+++|+
T Consensus 63 ~~ls~~e~~~I~ 74 (81)
T 2blf_B 63 APVDEADAKAIA 74 (81)
T ss_dssp CCCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 479999999986
No 59
>2w9k_A Cytochrome C, cytochrome C555; electron transport, intermembrane space, metal-binding, thioether bond, respiratory chain, trypanosome; HET: M3L HEC; 1.55A {Crithidia fasciculata} PDB: 2yk3_A* 4dy9_A*
Probab=24.16 E-value=38 Score=19.68 Aligned_cols=11 Identities=9% Similarity=0.096 Sum_probs=9.5
Q ss_pred cCCHHHHHHHH
Q 034904 62 PVSNREIEAIM 72 (79)
Q Consensus 62 pvS~~EIEAIl 72 (79)
-+|++||++|+
T Consensus 96 ~ls~~ei~~l~ 106 (114)
T 2w9k_A 96 MKKPQERADVI 106 (114)
T ss_dssp CCCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 47999999986
No 60
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=23.49 E-value=53 Score=20.64 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=12.4
Q ss_pred CcccCCHHHHHHHHh
Q 034904 59 KRTPVSNREIEAIMM 73 (79)
Q Consensus 59 kRtpvS~~EIEAIll 73 (79)
++.+++++||++|+-
T Consensus 103 ~~~~lt~~e~~~l~~ 117 (283)
T 1z19_A 103 RRSRLTADEYLKIYQ 117 (283)
T ss_dssp CCCCCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 567899999999874
No 61
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=23.43 E-value=40 Score=19.93 Aligned_cols=12 Identities=17% Similarity=0.398 Sum_probs=10.0
Q ss_pred ccCCHHHHHHHH
Q 034904 61 TPVSNREIEAIM 72 (79)
Q Consensus 61 tpvS~~EIEAIl 72 (79)
+-|+++||+..|
T Consensus 40 KGLt~~EI~~Al 51 (54)
T 3ff5_A 40 KGLTDEEIDLAF 51 (54)
T ss_dssp TTCCHHHHHHHH
T ss_pred cCCCHHHHHHHH
Confidence 469999999866
No 62
>2b67_A COG0778: nitroreductase; alpha-beta sandwich, FMN binding pocket, structural genomics protein structure initiative; HET: MSE FMN; 2.05A {Streptococcus pneumoniae} SCOP: d.90.1.1
Probab=23.11 E-value=43 Score=21.00 Aligned_cols=13 Identities=8% Similarity=0.258 Sum_probs=11.4
Q ss_pred ccCCHHHHHHHHh
Q 034904 61 TPVSNREIEAIMM 73 (79)
Q Consensus 61 tpvS~~EIEAIll 73 (79)
.||++++|+.||-
T Consensus 22 ~~v~~e~l~~il~ 34 (204)
T 2b67_A 22 KLVDPKDVRTAIE 34 (204)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 5899999999984
No 63
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=23.09 E-value=38 Score=17.24 Aligned_cols=15 Identities=33% Similarity=0.700 Sum_probs=10.5
Q ss_pred cccCCCCCCCCCCCC
Q 034904 6 RIKFPQRHPKSSASG 20 (79)
Q Consensus 6 ~IKFPqRh~k~s~s~ 20 (79)
|..||.|-..+.+++
T Consensus 2 rwrfparpg~s~~sg 16 (21)
T 3u85_B 2 RWRFPARPGTTGGGG 16 (26)
T ss_pred ccccccCCCcccCCC
Confidence 567898887765444
No 64
>3gfa_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN GOL; 1.35A {Clostridium difficile 630}
Probab=22.95 E-value=48 Score=20.67 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=11.7
Q ss_pred ccCCHHHHHHHHhc
Q 034904 61 TPVSNREIEAIMMG 74 (79)
Q Consensus 61 tpvS~~EIEAIllG 74 (79)
.||++|+|+.||--
T Consensus 19 ~~v~~e~l~~il~a 32 (198)
T 3gfa_A 19 QSISHETIEKIIEA 32 (198)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 48999999999843
No 65
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=22.82 E-value=44 Score=21.55 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=14.2
Q ss_pred CCcccCCHHHHHHHHhc
Q 034904 58 PKRTPVSNREIEAIMMG 74 (79)
Q Consensus 58 PkRtpvS~~EIEAIllG 74 (79)
=+|.|.|+||-++++.|
T Consensus 11 r~r~~WT~EEd~~L~~g 27 (105)
T 2aje_A 11 RIRRPFSVAEVEALVQA 27 (105)
T ss_dssp CCCCSCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 35679999999998876
No 66
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=22.78 E-value=43 Score=22.42 Aligned_cols=12 Identities=42% Similarity=0.562 Sum_probs=10.2
Q ss_pred ccCCHHHHHHHH
Q 034904 61 TPVSNREIEAIM 72 (79)
Q Consensus 61 tpvS~~EIEAIl 72 (79)
..|||+||.+|.
T Consensus 39 r~Ltdeev~~Va 50 (112)
T 2lky_A 39 RRLTNDEIKAIA 50 (112)
T ss_dssp TTCCHHHHHHHH
T ss_pred ccCCHHHHHHHH
Confidence 569999999885
No 67
>1ywq_A Nitroreductase family protein; FMN, structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: FMN; 2.30A {Bacillus cereus atcc 14579} SCOP: d.90.1.1
Probab=21.76 E-value=46 Score=20.53 Aligned_cols=14 Identities=14% Similarity=0.418 Sum_probs=11.6
Q ss_pred ccCCHHHHHHHHhc
Q 034904 61 TPVSNREIEAIMMG 74 (79)
Q Consensus 61 tpvS~~EIEAIllG 74 (79)
.||++|+|+.||--
T Consensus 25 ~~v~~e~l~~il~a 38 (200)
T 1ywq_A 25 DAITKERIEEVLKT 38 (200)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 38999999999843
No 68
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.58 E-value=81 Score=17.89 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=9.5
Q ss_pred cccCCHHHHHHH
Q 034904 60 RTPVSNREIEAI 71 (79)
Q Consensus 60 RtpvS~~EIEAI 71 (79)
||.+|.+.++.+
T Consensus 12 R~~ft~~Ql~~L 23 (76)
T 2dn0_A 12 KNKKSHEQLSAL 23 (76)
T ss_dssp CCCCCHHHHHHH
T ss_pred CccCCHHHHHHH
Confidence 888998877654
No 69
>3eo8_A BLUB-like flavoprotein; YP_001089088.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.74A {Clostridium difficile 630}
Probab=21.43 E-value=53 Score=20.81 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=11.4
Q ss_pred ccCCHHHHHHHHh
Q 034904 61 TPVSNREIEAIMM 73 (79)
Q Consensus 61 tpvS~~EIEAIll 73 (79)
.||++++|+.||-
T Consensus 20 ~~v~~e~l~~il~ 32 (219)
T 3eo8_A 20 QDVSDEDILKMIK 32 (219)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 4999999999984
No 70
>2ifa_A Hypothetical protein SMU.260; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: FMN; 2.30A {Streptococcus mutans} SCOP: d.90.1.1
Probab=21.32 E-value=48 Score=20.84 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=11.5
Q ss_pred ccCCHHHHHHHHhc
Q 034904 61 TPVSNREIEAIMMG 74 (79)
Q Consensus 61 tpvS~~EIEAIllG 74 (79)
.||++++|+.||--
T Consensus 21 ~~v~~e~l~~il~a 34 (208)
T 2ifa_A 21 VDLSKAELVALIQN 34 (208)
T ss_dssp CSSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 38999999998743
No 71
>3gna_A RAG-1, V(D)J recombination-activating protein 1; DNA recombination, DNA-binding, endonucle hydrolase; 2.40A {Mus musculus} PDB: 3gnb_A
Probab=20.94 E-value=24 Score=23.49 Aligned_cols=13 Identities=46% Similarity=0.555 Sum_probs=7.6
Q ss_pred HHHHHHHHhcccc
Q 034904 65 NREIEAIMMGFTE 77 (79)
Q Consensus 65 ~~EIEAIllGG~~ 77 (79)
.+|+||||.|-.+
T Consensus 80 AdELeA~mqgrg~ 92 (96)
T 3gna_A 80 ADELEAIMQGRGS 92 (96)
T ss_dssp HHHHHHHCC----
T ss_pred hHHHHHHHcCcCC
Confidence 4789999998544
No 72
>1qn2_A Cytochrome CH; electron transport; HET: HEC; 2.01A {Methylobacterium extorquens} SCOP: a.3.1.1
Probab=20.86 E-value=49 Score=18.72 Aligned_cols=11 Identities=9% Similarity=0.362 Sum_probs=9.1
Q ss_pred cCCHHHHHHHH
Q 034904 62 PVSNREIEAIM 72 (79)
Q Consensus 62 pvS~~EIEAIl 72 (79)
-+|++||++|+
T Consensus 83 ~~s~~di~~l~ 93 (100)
T 1qn2_A 83 ISDPKKVDDII 93 (100)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 45899999986
No 73
>1nox_A NADH oxidase; flavoenzyme, flavoprotein FMN, oxidoreductase, thermophIle; HET: FMN; 1.59A {Thermus thermophilus} SCOP: d.90.1.1
Probab=20.75 E-value=56 Score=20.38 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=11.2
Q ss_pred ccCCHHHHHHHHh
Q 034904 61 TPVSNREIEAIMM 73 (79)
Q Consensus 61 tpvS~~EIEAIll 73 (79)
.||++++|+.||-
T Consensus 26 ~~v~~e~l~~il~ 38 (205)
T 1nox_A 26 DPVPEGLLREILE 38 (205)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 3999999999984
No 74
>1vfr_A NAD(P)H\:FMN oxidoreductase; bioluminescence; HET: FMN; 1.80A {Aliivibrio fischeri} SCOP: d.90.1.1 PDB: 1v5y_A* 1v5z_A*
Probab=20.73 E-value=51 Score=20.70 Aligned_cols=13 Identities=15% Similarity=0.396 Sum_probs=11.2
Q ss_pred ccCCHHHHHHHHh
Q 034904 61 TPVSNREIEAIMM 73 (79)
Q Consensus 61 tpvS~~EIEAIll 73 (79)
.||++|+|+.||-
T Consensus 22 ~~v~~e~l~~il~ 34 (218)
T 1vfr_A 22 KKVSQEDLAVLLE 34 (218)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 4899999999974
No 75
>1icr_A Oxygen-insensitive NAD(P)H nitroreductase; alpha-beta, oxidoreductase; HET: FMN; 1.70A {Escherichia coli} SCOP: d.90.1.1 PDB: 1ds7_A* 1icu_A* 1icv_A* 1idt_A* 1oo5_A* 1oo6_A* 1oon_A* 1ooq_A* 1yki_A* 1ylr_A* 1ylu_A* 3hzn_A* 1kqb_A* 1kqc_A* 1kqd_A* 1nec_A*
Probab=20.01 E-value=54 Score=20.48 Aligned_cols=13 Identities=15% Similarity=0.222 Sum_probs=11.2
Q ss_pred ccCCHHHHHHHHh
Q 034904 61 TPVSNREIEAIMM 73 (79)
Q Consensus 61 tpvS~~EIEAIll 73 (79)
.||++++|+.||-
T Consensus 20 ~~v~~e~l~~il~ 32 (217)
T 1icr_A 20 KKLTPEQAEQIKT 32 (217)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 5899999999874
Done!