BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034905
(79 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q945L0|CX6B2_ARATH Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana
GN=COX6B-2 PE=2 SV=1
Length = 78
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 68/76 (89%), Positives = 74/76 (97%)
Query: 4 DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWI 63
DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRC AKGEESN+CERFAKYYR+LCPG+W+
Sbjct: 3 DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWV 62
Query: 64 EKWNEQRENGTFPGPL 79
+KWNEQRE+GTFPGPL
Sbjct: 63 DKWNEQRESGTFPGPL 78
>sp|Q9SUD3|CX6B3_ARATH Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana
GN=COX6B-3 PE=2 SV=2
Length = 78
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 67/76 (88%), Positives = 73/76 (96%)
Query: 4 DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWI 63
DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRC AKGE++NECERFAKYYR+LCPG+W+
Sbjct: 3 DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWV 62
Query: 64 EKWNEQRENGTFPGPL 79
+KWNEQRE GTFPGPL
Sbjct: 63 DKWNEQRETGTFPGPL 78
>sp|Q9S7L9|CX6B1_ARATH Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana
GN=COX6B-1 PE=2 SV=1
Length = 191
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 59/76 (77%), Positives = 74/76 (97%)
Query: 4 DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWI 63
DEI+L+TAPADFRFPTTNQTRHCFTRY+E+HRC+AAKG+++ EC++FAK+YRSLCP +W+
Sbjct: 115 DEIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWV 174
Query: 64 EKWNEQRENGTFPGPL 79
++WNEQRENGTFPGPL
Sbjct: 175 DRWNEQRENGTFPGPL 190
>sp|O94581|COX12_SCHPO Cytochrome c oxidase subunit 6B OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cox12 PE=3 SV=2
Length = 86
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 55/78 (70%)
Query: 2 AADEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGD 61
A + T D RFP TNQT+HCF YI++ RC+ AKGE+ C++F Y+SLCP +
Sbjct: 9 APKQFTFGTVGFDARFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPME 68
Query: 62 WIEKWNEQRENGTFPGPL 79
W+E+W+EQRENGTFP P+
Sbjct: 69 WVERWDEQRENGTFPAPI 86
>sp|Q01519|COX12_YEAST Cytochrome c oxidase subunit 6B OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=COX12 PE=1 SV=2
Length = 83
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 49/72 (68%)
Query: 8 LKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKWN 67
L T D RFP NQT+HC+ Y+++H+C+ KGE+ C+ F K Y +LCP DWIEKW+
Sbjct: 9 LHTVGFDARFPQQNQTKHCWQSYVDYHKCVNMKGEDFAPCKVFWKTYNALCPLDWIEKWD 68
Query: 68 EQRENGTFPGPL 79
+QRE G F G +
Sbjct: 69 DQREKGIFAGDI 80
>sp|P14854|CX6B1_HUMAN Cytochrome c oxidase subunit 6B1 OS=Homo sapiens GN=COX6B1 PE=1
SV=2
Length = 86
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 9 KTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSLCPGDWIEK 65
KTAP D RFP NQTR+C+ Y++FHRC + AKG + + CE + + Y+SLCP W+
Sbjct: 13 KTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTD 72
Query: 66 WNEQRENGTFPGPL 79
W+EQR GTFPG +
Sbjct: 73 WDEQRAEGTFPGKI 86
>sp|Q5RCT0|CX6B1_PONAB Cytochrome c oxidase subunit 6B1 OS=Pongo abelii GN=COX6B1 PE=3
SV=3
Length = 86
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 9 KTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSLCPGDWIEK 65
KTAP D RFP NQTR+C+ Y++FHRC + AKG + + CE + + Y+SLCP W+
Sbjct: 13 KTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTD 72
Query: 66 WNEQRENGTFPGPL 79
W+EQR GTFPG +
Sbjct: 73 WDEQRAEGTFPGKI 86
>sp|Q53CG4|CX6B1_MACMU Cytochrome c oxidase subunit 6B1 OS=Macaca mulatta GN=COX6B1 PE=3
SV=3
Length = 87
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 55/87 (63%), Gaps = 8/87 (9%)
Query: 1 MAADEIE-----LKTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAK 52
MA ++IE KTAP D RFP NQTR+C+ Y++FHRC + KG + CE + +
Sbjct: 1 MAEEDIETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTTKGGNVSVCEWYQR 60
Query: 53 YYRSLCPGDWIEKWNEQRENGTFPGPL 79
Y+SLCP W+ W+EQR GTFPG +
Sbjct: 61 VYQSLCPTSWVTDWDEQRAEGTFPGKI 87
>sp|Q4R374|CX6B1_MACFA Cytochrome c oxidase subunit 6B1 OS=Macaca fascicularis GN=COX6B1
PE=3 SV=3
Length = 87
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 55/87 (63%), Gaps = 8/87 (9%)
Query: 1 MAADEIE-----LKTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAK 52
MA ++IE KTAP D RFP NQTR+C+ Y++FHRC + KG + CE + +
Sbjct: 1 MAEEDIETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTTKGGNVSVCEWYQR 60
Query: 53 YYRSLCPGDWIEKWNEQRENGTFPGPL 79
Y+SLCP W+ W+EQR GTFPG +
Sbjct: 61 VYQSLCPTSWVTDWDEQRAEGTFPGKI 87
>sp|Q7YRK6|CX6B1_TARSY Cytochrome c oxidase subunit 6B1 OS=Tarsius syrichta GN=COX6B1
PE=3 SV=3
Length = 86
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 9 KTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSLCPGDWIEK 65
KTAP D RFP NQTR+C+ Y++FHRC + AKG + + CE + + Y+SLCP W+
Sbjct: 13 KTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVST 72
Query: 66 WNEQRENGTFPGPL 79
W+++R GTFPG +
Sbjct: 73 WDDRRAEGTFPGKI 86
>sp|P00429|CX6B1_BOVIN Cytochrome c oxidase subunit 6B1 OS=Bos taurus GN=COX6B1 PE=1
SV=2
Length = 86
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 9 KTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSLCPGDWIEK 65
+TAP D RFP NQTR+C+ Y++FHRC + AKG + + CE + + Y+SLCP W+
Sbjct: 13 QTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVST 72
Query: 66 WNEQRENGTFPGPL 79
W+++R GTFPG +
Sbjct: 73 WDDRRAEGTFPGKI 86
>sp|P56391|CX6B1_MOUSE Cytochrome c oxidase subunit 6B1 OS=Mus musculus GN=Cox6b1 PE=1
SV=2
Length = 86
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 50/74 (67%), Gaps = 3/74 (4%)
Query: 9 KTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSLCPGDWIEK 65
KTAP D RFP NQT++C+ Y++FHRC + AKG + + CE + + Y+SLCP W+
Sbjct: 13 KTAPFDSRFPNQNQTKNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPVSWVSA 72
Query: 66 WNEQRENGTFPGPL 79
W+++ GTFPG +
Sbjct: 73 WDDRIAEGTFPGKI 86
>sp|Q80ZN9|CX6B2_MOUSE Cytochrome c oxidase subunit 6B2 OS=Mus musculus GN=Cox6b2 PE=2
SV=1
Length = 88
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 7 ELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAA---KGEESNECERFAKYYRSLCPGDWI 63
+ T P D RFP NQTR+C+ ++++HRC+ +G+ + CE + + + SLCP W+
Sbjct: 13 QWTTPPFDPRFPNQNQTRNCYQNFLDYHRCVKTMNRRGKSTQPCEYYFRVFHSLCPISWV 72
Query: 64 EKWNEQRENGTFPGPL 79
++WNEQ + GTFPG +
Sbjct: 73 QRWNEQIKQGTFPGKI 88
>sp|Q6YFQ1|CX6B2_RAT Cytochrome c oxidase subunit 6B2 OS=Rattus norvegicus GN=Cox6b2
PE=2 SV=1
Length = 88
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 7 ELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAA---KGEESNECERFAKYYRSLCPGDWI 63
+ T P D RFP NQTR+C+ ++++HRC+ +G+ + C+ + + + SLCP W+
Sbjct: 13 QWTTPPFDPRFPNQNQTRNCYQNFLDYHRCVKTMDRRGKNTQACDYYFRVFHSLCPVSWV 72
Query: 64 EKWNEQRENGTFPGPL 79
++WNEQ + GTFPG +
Sbjct: 73 QRWNEQIKQGTFPGKI 88
>sp|Q6YFQ2|CX6B2_HUMAN Cytochrome c oxidase subunit 6B2 OS=Homo sapiens GN=COX6B2 PE=2
SV=1
Length = 88
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 10 TAPADFRFPTTNQTRHCFTRYIEFHRCLAAK---GEESNECERFAKYYRSLCPGDWIEKW 66
T P D RFP+ NQ R+C+ ++++HRCL + G+ + CE + + Y SLCP W+E W
Sbjct: 16 TPPFDPRFPSQNQIRNCYQNFLDYHRCLKTRTRRGKSTQPCEYYFRVYHSLCPISWVESW 75
Query: 67 NEQRENGTFPGPL 79
NEQ +NG F G +
Sbjct: 76 NEQIKNGIFAGKI 88
>sp|Q6YFP9|CX6B2_BOVIN Cytochrome c oxidase subunit 6B2 OS=Bos taurus GN=COX6B2 PE=2
SV=1
Length = 88
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
Query: 10 TAPADFRFPTTNQTRHCFTRYIEFHRCLAA---KGEESNECERFAKYYRSLCPGDWIEKW 66
T P D RFP NQTR+C+ ++++HRC+ +G+ + CE + + Y SLCP W+++W
Sbjct: 16 TPPFDPRFPNQNQTRNCYQNFLDYHRCIKTMNRRGKSTQPCEYYFRVYHSLCPISWVQRW 75
Query: 67 NEQRENGTFPGPL 79
EQ ++GTF G +
Sbjct: 76 KEQIKDGTFAGKI 88
>sp|Q54P95|COX6B_DICDI Probable cytochrome c oxidase subunit 6B OS=Dictyostelium
discoideum GN=DDB_G0284693 PE=3 SV=1
Length = 78
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%)
Query: 7 ELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKW 66
+L+TAP + RFP NQT+HC+ Y++++ C+ ++++C+ F SLCP WI +W
Sbjct: 5 QLQTAPYNPRFPQQNQTKHCWANYVDYYGCVKHYNGDNSKCQTFFNSMNSLCPAAWISEW 64
Query: 67 NEQRENGTFPG 77
+EQ+ FP
Sbjct: 65 DEQKAADLFPS 75
>sp|Q9LPJ2|CX6BL_ARATH Putative cytochrome c oxidase subunit 6b-like OS=Arabidopsis
thaliana GN=At1g32710 PE=3 SV=2
Length = 134
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%)
Query: 11 APADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEK 65
A + RFP TN+TRHCF R++++H+C+ G ++N+C Y RS+CP + + K
Sbjct: 59 AAVEERFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELVSK 113
>sp|Q2M2S5|COA6_BOVIN Cytochrome c oxidase assembly factor 6 homolog OS=Bos taurus
GN=COA6 PE=3 SV=1
Length = 79
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 33/58 (56%)
Query: 18 PTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTF 75
PT + + C+ E+ +CL E++++C++ + S CP WI+ ++++R+ F
Sbjct: 4 PTMKERQACWGARDEYWKCLDENTEDASKCKKLRSSFESSCPQQWIKYFDKRRDYLKF 61
>sp|C5CFR2|PANB_KOSOT 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Kosmotoga
olearia (strain TBF 19.5.1) GN=panB PE=3 SV=1
Length = 267
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 24 RHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPG--DWIEKWNEQRENGTFPGP 78
R+C + + +H L E S RF K Y +L D ++K+NE+ +NG FPGP
Sbjct: 203 RYCDGQVLVWHDLLGINTEFS---PRFVKRYANLRKDIVDALKKYNEEVKNGEFPGP 256
>sp|Q5JTJ3|COA6_HUMAN Cytochrome c oxidase assembly factor 6 homolog OS=Homo sapiens
GN=COA6 PE=1 SV=1
Length = 125
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 33/58 (56%)
Query: 18 PTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTF 75
P+ + + C+ E+ +CL E++++C++ + S CP WI+ ++++R+ F
Sbjct: 50 PSMKERQVCWGARDEYWKCLDENLEDASQCKKLRSSFESSCPQQWIKYFDKRRDYLKF 107
>sp|Q8BGD8|COA6_MOUSE Cytochrome c oxidase assembly factor 6 homolog OS=Mus musculus
GN=Coa6 PE=1 SV=1
Length = 79
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 30/58 (51%)
Query: 18 PTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTF 75
P+ + + C+ + RCL E++ C++ + + CP WI+ ++++R+ F
Sbjct: 4 PSMKERQACWGARDLYWRCLDDNAEDAARCQKLRSSFEASCPQQWIKYFDKRRDYLKF 61
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,352,826
Number of Sequences: 539616
Number of extensions: 1155254
Number of successful extensions: 1759
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1727
Number of HSP's gapped (non-prelim): 22
length of query: 79
length of database: 191,569,459
effective HSP length: 50
effective length of query: 29
effective length of database: 164,588,659
effective search space: 4773071111
effective search space used: 4773071111
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)