Query 034905
Match_columns 79
No_of_seqs 103 out of 278
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 07:33:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034905.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034905hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3057 Cytochrome c oxidase, 100.0 1.4E-41 3.1E-46 224.7 8.1 74 6-79 38-111 (112)
2 cd00926 Cyt_c_Oxidase_VIb Cyto 100.0 3.2E-41 7E-46 209.9 9.0 73 6-78 3-75 (75)
3 PF02297 COX6B: Cytochrome oxi 99.9 3.3E-28 7.2E-33 150.7 5.4 58 15-72 1-67 (76)
4 PF06747 CHCH: CHCH domain; I 94.9 0.026 5.6E-07 29.3 2.1 31 26-56 1-31 (35)
5 KOG4618 Uncharacterized conser 94.0 0.16 3.4E-06 31.7 4.5 47 24-71 22-68 (74)
6 PF08991 DUF1903: Domain of un 67.5 5.2 0.00011 24.2 2.1 31 28-58 6-36 (67)
7 PF14345 GDYXXLXY: GDYXXLXY pr 65.8 2.8 6.1E-05 27.9 0.7 16 4-19 21-36 (144)
8 KOG4090 Uncharacterized conser 62.9 11 0.00025 26.5 3.3 34 22-55 114-147 (157)
9 COG4929 Uncharacterized membra 50.9 5.6 0.00012 28.9 0.2 14 4-17 36-49 (190)
10 PF05676 NDUF_B7: NADH-ubiquin 50.2 17 0.00037 22.0 2.3 36 21-56 17-52 (66)
11 PF08057 Ery_res_leader2: Eryt 47.0 5.3 0.00011 17.4 -0.3 9 14-22 6-14 (14)
12 KOG4763 Ubiquinol-cytochrome c 46.1 17 0.00037 22.8 1.8 19 21-39 48-66 (77)
13 CHL00088 apcB allophycocyanin 42.9 63 0.0014 22.4 4.5 61 11-72 67-136 (161)
14 KOG4624 Uncharacterized conser 36.9 85 0.0018 20.8 4.1 55 19-73 26-94 (104)
15 KOG3458 NADH:ubiquinone oxidor 36.5 42 0.00092 23.8 2.8 39 23-61 75-114 (170)
16 PF09717 CPW_WPC: Plasmodium f 33.2 8.8 0.00019 22.1 -0.9 12 52-63 3-14 (60)
17 PF10203 Pet191_N: Cytochrome 32.7 40 0.00087 20.3 1.9 25 31-55 27-52 (68)
18 TIGR01492 CPW_WPC Plasmodium f 28.8 11 0.00024 22.0 -1.0 14 52-65 4-17 (62)
19 PF05240 APOBEC_C: APOBEC-like 28.5 31 0.00067 20.2 0.9 17 18-34 21-37 (55)
20 smart00695 DUSP Domain in ubiq 25.8 71 0.0015 18.9 2.2 21 59-79 11-33 (86)
21 KOG3477 Putative cytochrome c 24.7 98 0.0021 20.1 2.8 46 10-56 15-60 (97)
22 PTZ00444 hypothetical protein; 22.6 10 0.00022 27.4 -2.3 15 50-64 97-111 (184)
23 TIGR01337 apcB allophycocyanin 20.1 3.1E+02 0.0068 19.0 5.5 61 10-71 66-135 (167)
No 1
>KOG3057 consensus Cytochrome c oxidase, subunit VIb/COX12 [Energy production and conversion]
Probab=100.00 E-value=1.4e-41 Score=224.69 Aligned_cols=74 Identities=69% Similarity=1.424 Sum_probs=72.3
Q ss_pred ccccCCCCCCCCCChHHHHHHHHHhHHHHHHhhhcCCCchHHHHHHHHHHhhChHHHHHHHHHhhhhCCCCCCC
Q 034905 6 IELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPGPL 79 (79)
Q Consensus 6 ~~~~t~~~D~RfPn~nq~k~Cw~~y~~y~~C~~~~Ged~~~C~~~~~~y~s~CP~~Wve~wde~R~~g~f~~~~ 79 (79)
..|.|+|+|+||||+|||+|||++|+|||||++++|+|..+|++|+++|+|+||.+||++|||||++|+|||+|
T Consensus 38 ~~l~tap~d~RFP~~nqtrhCf~~y~dyhrC~~~~geD~~~Ck~f~~~y~SlCP~~WV~kWdeqre~G~Fpg~~ 111 (112)
T KOG3057|consen 38 KLLTTAPVDARFPNTNQTRHCFQRYVDYHRCIKAKGEDANPCKKFQKVYRSLCPGEWVEKWDEQRENGTFPGPI 111 (112)
T ss_pred cccccccccccCCCcchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHhCcHHHHHHHHHhhhcCCCCCCC
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>cd00926 Cyt_c_Oxidase_VIb Cytochrome c oxidase subunit VIb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIb is one of three mammalian subunits that lacks a transmembrane region. It is located on the cytosolic side of the membrane and helps form the dimer interface with the corresponding subunit on the other monomer complex.
Probab=100.00 E-value=3.2e-41 Score=209.89 Aligned_cols=73 Identities=58% Similarity=1.253 Sum_probs=71.3
Q ss_pred ccccCCCCCCCCCChHHHHHHHHHhHHHHHHhhhcCCCchHHHHHHHHHHhhChHHHHHHHHHhhhhCCCCCC
Q 034905 6 IELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPGP 78 (79)
Q Consensus 6 ~~~~t~~~D~RfPn~nq~k~Cw~~y~~y~~C~~~~Ged~~~C~~~~~~y~s~CP~~Wve~wde~R~~g~f~~~ 78 (79)
+.+.|+|+||||||+|||++||++||+||+|++++|+|.++|++|++.|+++||++||++|+|+|++|+||++
T Consensus 3 ~~~~t~~~D~RfP~~nq~k~Cw~~y~~y~~Cl~~~ged~~~C~~~~~~~es~Cp~~Wve~w~ekR~~g~f~~~ 75 (75)
T cd00926 3 GPLTTAPFDPRFPNQNQTKHCWQRYVDYHRCIKAKGEDASPCKKFRRVYESLCPQEWLEKWDEQREEGTFPGK 75 (75)
T ss_pred ccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhCcHHHHHHHHHHHHhCCCCCC
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999986
No 3
>PF02297 COX6B: Cytochrome oxidase c subunit VIb; InterPro: IPR003213 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex that is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptide subunits. One of these subunits is the potentially haem-binding subunit, VIb, which is encoded in the nucleus []. ; GO: 0004129 cytochrome-c oxidase activity, 0005739 mitochondrion; PDB: 1OCC_U 1OCR_U 2DYS_H 3ASO_H 3AG3_U 2EIL_H 2EIJ_U 3AG2_U 3ABM_U 2EIN_U ....
Probab=99.95 E-value=3.3e-28 Score=150.68 Aligned_cols=58 Identities=34% Similarity=0.859 Sum_probs=50.4
Q ss_pred CCCCChHHHHHHHHHhHHHHHHhhhcCC---------CchHHHHHHHHHHhhChHHHHHHHHHhhhh
Q 034905 15 FRFPTTNQTRHCFTRYIEFHRCLAAKGE---------ESNECERFAKYYRSLCPGDWIEKWNEQREN 72 (79)
Q Consensus 15 ~RfPn~nq~k~Cw~~y~~y~~C~~~~Ge---------d~~~C~~~~~~y~s~CP~~Wve~wde~R~~ 72 (79)
||||++|||++||++||+||+||+.+|+ +.+.|+.+++.|+++||.+||++|+++|..
T Consensus 1 ~rfP~~~~r~~Cw~arD~y~~Cl~~~~~~~~~~~~~~~~~~C~~~~~~ye~~Cp~sWv~~f~~~R~~ 67 (76)
T PF02297_consen 1 PRFPNRNQRKKCWQARDDYFKCLDKNGEPDSEKEKKKDESACKYFRKNYESNCPSSWVKYFDEKRVY 67 (76)
T ss_dssp -TS-SSB-HHHHHHHHHHHHHHHHHHHH------TTTTGGGGHHHHHHHHHHS-HHHHHHHHHH---
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHcCccccccccccchhhhHHHHHHHHHhCcHHHHHHHHHHhhH
Confidence 7999999999999999999999999999 899999999999999999999999999443
No 4
>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.
Probab=94.86 E-value=0.026 Score=29.30 Aligned_cols=31 Identities=19% Similarity=0.472 Sum_probs=26.2
Q ss_pred HHHHhHHHHHHhhhcCCCchHHHHHHHHHHh
Q 034905 26 CFTRYIEFHRCLAAKGEESNECERFAKYYRS 56 (79)
Q Consensus 26 Cw~~y~~y~~C~~~~Ged~~~C~~~~~~y~s 56 (79)
|-.-...|..|++.++.+.+.|..+.++|..
T Consensus 1 C~~e~~~~~~Cl~~n~~~~~~C~~~~~~~~~ 31 (35)
T PF06747_consen 1 CAEEMKAYLACLKENNFDWSKCRKEFKAYKE 31 (35)
T ss_dssp THHHHHHHHHHHHCH-SSTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCcHHhhHHHHHHHHH
Confidence 4456778999999999999999999999976
No 5
>KOG4618 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.01 E-value=0.16 Score=31.69 Aligned_cols=47 Identities=21% Similarity=0.537 Sum_probs=41.0
Q ss_pred HHHHHHhHHHHHHhhhcCCCchHHHHHHHHHHhhChHHHHHHHHHhhh
Q 034905 24 RHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRE 71 (79)
Q Consensus 24 k~Cw~~y~~y~~C~~~~Ged~~~C~~~~~~y~s~CP~~Wve~wde~R~ 71 (79)
.-|...+..=++||++++-|-+.|+.++.+|+ .|-..|.+-=-|+|.
T Consensus 22 nPCl~es~aSfkCLeennyDRsKCq~yFd~Yk-eCKkfwn~ar~errk 68 (74)
T KOG4618|consen 22 NPCLLESSASFKCLEENNYDRSKCQDYFDVYK-ECKKFWNEARLERRK 68 (74)
T ss_pred ChHHHHHHHHHHHHHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Confidence 56999999999999999999999999999997 588888877666654
No 6
>PF08991 DUF1903: Domain of unknown function (DUF1903); InterPro: IPR009069 The mature-T-cell-proliferation (MTCP1) putative oncogene was identified for its involvement in t(X:14)(q28;q11)-associated T-cell leukaemia []. MTCP1 is alternatively spliced to produce two completely distinct proteins: the small mitochondrial protein, p8MTCP1, and the protein p13MTCP1, which shows strong homology to another oncogene product, p14TCL1. While p13MTCP1 expression appears to be restricted to mature T-cell proliferation with t(X,14) translocations, the mitochondrial p8MTCP1 is expressed at low levels in most human tissues, and is over-expressed in the proliferating T-cells. The biological function of p8MTCP1 is still unknown, but it appears to play a role in oncogenesis. The structure of p8MTCP1 reveals a disulphide-rich, irregular array of three helices [].; PDB: 2HP8_A 1EI0_A 1HP8_A.
Probab=67.51 E-value=5.2 Score=24.23 Aligned_cols=31 Identities=13% Similarity=0.476 Sum_probs=23.5
Q ss_pred HHhHHHHHHhhhcCCCchHHHHHHHHHHhhC
Q 034905 28 TRYIEFHRCLAAKGEESNECERFAKYYRSLC 58 (79)
Q Consensus 28 ~~y~~y~~C~~~~Ged~~~C~~~~~~y~s~C 58 (79)
..-..-..||..+|-|.+.|..+...|+.-|
T Consensus 6 ~~Ac~iq~CL~~N~Yd~~kC~~~i~~l~~Cc 36 (67)
T PF08991_consen 6 KEACAIQKCLQRNNYDESKCQDYIDALYECC 36 (67)
T ss_dssp HHHHHHHHHHHHTTT-CCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3344678899999999999999988887644
No 7
>PF14345 GDYXXLXY: GDYXXLXY protein
Probab=65.82 E-value=2.8 Score=27.91 Aligned_cols=16 Identities=50% Similarity=0.509 Sum_probs=13.2
Q ss_pred ccccccCCCCCCCCCC
Q 034905 4 DEIELKTAPADFRFPT 19 (79)
Q Consensus 4 ~~~~~~t~~~D~RfPn 19 (79)
.++.|+|+|.|||=+-
T Consensus 21 ~~v~L~~~PvDPRdll 36 (144)
T PF14345_consen 21 KEVTLKTAPVDPRDLL 36 (144)
T ss_pred CEEEEEecccCccccc
Confidence 4678999999999654
No 8
>KOG4090 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.86 E-value=11 Score=26.53 Aligned_cols=34 Identities=24% Similarity=0.636 Sum_probs=29.1
Q ss_pred HHHHHHHHhHHHHHHhhhcCCCchHHHHHHHHHH
Q 034905 22 QTRHCFTRYIEFHRCLAAKGEESNECERFAKYYR 55 (79)
Q Consensus 22 q~k~Cw~~y~~y~~C~~~~Ged~~~C~~~~~~y~ 55 (79)
|...|.----.|..|+.+.|.|.+.|..|....+
T Consensus 114 ~~~~C~~e~kqF~dCa~~~~~d~slC~~f~e~Lk 147 (157)
T KOG4090|consen 114 QQQPCFIEIKQFLDCAQNQGSDISLCEGYNEMLK 147 (157)
T ss_pred hcCchHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 4567998889999999999999999998877654
No 9
>COG4929 Uncharacterized membrane-anchored protein [Function unknown]
Probab=50.92 E-value=5.6 Score=28.85 Aligned_cols=14 Identities=57% Similarity=0.608 Sum_probs=11.6
Q ss_pred ccccccCCCCCCCC
Q 034905 4 DEIELKTAPADFRF 17 (79)
Q Consensus 4 ~~~~~~t~~~D~Rf 17 (79)
.++.|+|+|.|||-
T Consensus 36 ~~IiLqtaPVDPRs 49 (190)
T COG4929 36 REIILQTAPVDPRS 49 (190)
T ss_pred CEEEEEeCCCChHH
Confidence 45779999999993
No 10
>PF05676 NDUF_B7: NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7); InterPro: IPR008698 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several NADH-ubiquinone oxidoreductase B18 subunit proteins from different eukaryotic organisms. Oxidative phosphorylation is the well-characterised process in which ATP, the principal carrier of chemical energy of individual cells, is produced due to a mitochondrial proton gradient formed by the transfer of electrons from NADH and FADH2 to molecular oxygen. The oxidative phosphorylation (OXPHOS) system is located in the mitochondrial inner membrane and consists of five multi-subunit enzyme complexes and two small electron carriers: coenzyme Q10 and cytochrome C. At least 70 structural proteins involved in the formation of the whole OXPHOS system are encoded by nuclear genes, whereas 13 structural proteins are encoded by the mitochondrial genome. Deficiency of NADH ubiquinone oxidoreductase, the first enzyme complex of the mitochondrial respiratory chain, is one of the most frequent causes of Homo sapiens mitochondrial encephalomyopathies [].; GO: 0003954 NADH dehydrogenase activity, 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=50.21 E-value=17 Score=21.96 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=30.3
Q ss_pred HHHHHHHHHhHHHHHHhhhcCCCchHHHHHHHHHHh
Q 034905 21 NQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRS 56 (79)
Q Consensus 21 nq~k~Cw~~y~~y~~C~~~~Ged~~~C~~~~~~y~s 56 (79)
.+|-.|--....|.+|.+.+-.-.-.|...+..|+.
T Consensus 17 ~~RDyCAh~Li~l~kCrr~~~p~~~~C~~erH~y~~ 52 (66)
T PF05676_consen 17 QYRDYCAHLLIPLNKCRRDNFPFPWKCEHERHEYEK 52 (66)
T ss_pred hhhhhHHHHHHHHHHHHHhCCCCcccCCcchhhHHH
Confidence 578999999999999999886666688888888865
No 11
>PF08057 Ery_res_leader2: Erythromycin resistance leader peptide; InterPro: IPR012559 This family consists of erythromycin resistance gene leader peptides. These leader peptides are involved in the transcriptional attenuation control of the synthesis of the macrolide-lincosamide -streptogramin B resistance protein. It acts as a transcriptional attenuator, in contrast to other inducible erm genes. The mRNA leader sequence can fold in either of two mutually exclusive conformations, one of which is postulated to form in the absence of induction, and to contain two rho factor-independent terminators [].; GO: 0046677 response to antibiotic
Probab=46.99 E-value=5.3 Score=17.40 Aligned_cols=9 Identities=67% Similarity=1.062 Sum_probs=6.6
Q ss_pred CCCCCChHH
Q 034905 14 DFRFPTTNQ 22 (79)
Q Consensus 14 D~RfPn~nq 22 (79)
--|||+-||
T Consensus 6 rlrfptlnq 14 (14)
T PF08057_consen 6 RLRFPTLNQ 14 (14)
T ss_pred eeeccccCC
Confidence 358998776
No 12
>KOG4763 consensus Ubiquinol-cytochrome c reductase hinge protein [Energy production and conversion]
Probab=46.13 E-value=17 Score=22.75 Aligned_cols=19 Identities=26% Similarity=0.817 Sum_probs=15.9
Q ss_pred HHHHHHHHHhHHHHHHhhh
Q 034905 21 NQTRHCFTRYIEFHRCLAA 39 (79)
Q Consensus 21 nq~k~Cw~~y~~y~~C~~~ 39 (79)
+--++|-+-|-||++|++.
T Consensus 48 ~tee~Ct~e~fDy~h~~Dh 66 (77)
T KOG4763|consen 48 STEEHCTGEYFDYWHCLDH 66 (77)
T ss_pred ccchhhHHHHHHHHHHHHH
Confidence 3457999999999999874
No 13
>CHL00088 apcB allophycocyanin beta subunit
Probab=42.93 E-value=63 Score=22.42 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=42.0
Q ss_pred CCCCCCCCChHHHHHHHHHhHHHHHHhhh--cCCC----chHH-HHHHHHHHhh-ChHHHH-HHHHHhhhh
Q 034905 11 APADFRFPTTNQTRHCFTRYIEFHRCLAA--KGEE----SNEC-ERFAKYYRSL-CPGDWI-EKWNEQREN 72 (79)
Q Consensus 11 ~~~D~RfPn~nq~k~Cw~~y~~y~~C~~~--~Ged----~~~C-~~~~~~y~s~-CP~~Wv-e~wde~R~~ 72 (79)
.|....+++.. ...||-=..-|.|++.- ..+| .+.| .-++..|+++ ||.+|+ +-....|+.
T Consensus 67 ~~Gg~~y~~~r-~~~C~RD~~~~LR~itYaivaGd~~~L~e~~L~GlrE~y~~Lgvp~~~~i~al~~mk~~ 136 (161)
T CHL00088 67 RPGGNMYTTRR-YAACIRDLDYYLRYATYGMLAGDPSILDERVLNGLKETYNSLGVPIGATIQAIQAMKEV 136 (161)
T ss_pred CCCCCccChHH-HHHHHHHHhhhccceeeeeecCCchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 35555555443 77899999999999872 2223 4556 7789999995 999987 555444443
No 14
>KOG4624 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.89 E-value=85 Score=20.77 Aligned_cols=55 Identities=18% Similarity=0.444 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHhHHHHHHhhhcCCC-chHHHHHHH-------------HHHhhChHHHHHHHHHhhhhC
Q 034905 19 TTNQTRHCFTRYIEFHRCLAAKGEE-SNECERFAK-------------YYRSLCPGDWIEKWNEQRENG 73 (79)
Q Consensus 19 n~nq~k~Cw~~y~~y~~C~~~~Ged-~~~C~~~~~-------------~y~s~CP~~Wve~wde~R~~g 73 (79)
.+..|..|-+.+.+|-.|.+..|.. ...|.+... +|+..|-...|.-=...|+.|
T Consensus 26 ~kakt~~C~~~v~~~a~C~k~~~v~vv~TCrkq~~elk~Cl~~~~~D~af~e~~rd~yv~Er~~~ratg 94 (104)
T KOG4624|consen 26 LKAKTEKCSEFVQDFADCAKASGVSVVPTCRKQNSELKECLTQYYNDEAFLEECRDEYVQERINKRATG 94 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeeeehhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcc
Confidence 3566789999999999999988754 444554433 345566666665544444444
No 15
>KOG3458 consensus NADH:ubiquinone oxidoreductase, NDUFA8/PGIV/19 kDa subunit [Energy production and conversion]
Probab=36.51 E-value=42 Score=23.83 Aligned_cols=39 Identities=15% Similarity=0.553 Sum_probs=33.0
Q ss_pred HHHHHHHhHHHHHHhhhcC-CCchHHHHHHHHHHhhChHH
Q 034905 23 TRHCFTRYIEFHRCLAAKG-EESNECERFAKYYRSLCPGD 61 (79)
Q Consensus 23 ~k~Cw~~y~~y~~C~~~~G-ed~~~C~~~~~~y~s~CP~~ 61 (79)
-++|-.-.++|.-|++..| -..+.|.+.+..|..-||.-
T Consensus 75 kr~C~~e~~~y~~C~dysst~~f~~Crk~Q~~fdkcv~~k 114 (170)
T KOG3458|consen 75 KRSCLEEFTKYATCMDYSSTNEFSHCRKEQEAFDKCVPDK 114 (170)
T ss_pred HHHhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhh
Confidence 3789999999999999875 45788999999999998863
No 16
>PF09717 CPW_WPC: Plasmodium falciparum domain of unknown function (CPW_WPC); InterPro: IPR006387 This entry represents a domain of about 61 residues in length with six well-conserved cysteine residues and six well-conserved aromatic sites. The domain can be found in tandem repeats. It is named for motifs of CPxxW and (less well conserved) WPC. Its function is unknown.
Probab=33.17 E-value=8.8 Score=22.10 Aligned_cols=12 Identities=42% Similarity=1.165 Sum_probs=10.0
Q ss_pred HHHHhhChHHHH
Q 034905 52 KYYRSLCPGDWI 63 (79)
Q Consensus 52 ~~y~s~CP~~Wv 63 (79)
+-|.+.||..|+
T Consensus 3 rdys~~CP~~W~ 14 (60)
T PF09717_consen 3 RDYSQPCPEGWI 14 (60)
T ss_pred Cccccccccccc
Confidence 347788999999
No 17
>PF10203 Pet191_N: Cytochrome c oxidase assembly protein PET191; InterPro: IPR018793 This entry represents a family of conserved proteins found from nematodes to humans. Cytochrome c oxidase assembly protein Pet191 carries six highly conserved cysteine residues. Pet191 is required for the assembly of active cytochrome c oxidase but does not form part of the final assembled complex [].
Probab=32.72 E-value=40 Score=20.31 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=15.7
Q ss_pred HHHHHHhhhc-CCCchHHHHHHHHHH
Q 034905 31 IEFHRCLAAK-GEESNECERFAKYYR 55 (79)
Q Consensus 31 ~~y~~C~~~~-Ged~~~C~~~~~~y~ 55 (79)
-.+..|++.. .+-.+.|+.++++|-
T Consensus 27 ~t~~~Cl~~~~~~~p~eC~~lr~~f~ 52 (68)
T PF10203_consen 27 RTPKDCLKDPSDELPEECQQLRKAFF 52 (68)
T ss_pred CCHHHHHcCCCCcCCHHHHHHHHHHH
Confidence 3455555555 334677888888874
No 18
>TIGR01492 CPW_WPC Plasmodium falciparum CPW-WPC domain. This model represents a domain of about 61 residues in length with six well-conserved cysteine residues and six well-conserved aromatic sites. The domain can be found in tandem repeats, and is known so far only in Plasmodium falciparum. It is named for motifs of CPxxW and (less well conserved) WPC.
Probab=28.77 E-value=11 Score=21.98 Aligned_cols=14 Identities=50% Similarity=1.210 Sum_probs=11.0
Q ss_pred HHHHhhChHHHHHH
Q 034905 52 KYYRSLCPGDWIEK 65 (79)
Q Consensus 52 ~~y~s~CP~~Wve~ 65 (79)
+-|.+.||..|+..
T Consensus 4 rdYs~~CP~~W~~~ 17 (62)
T TIGR01492 4 ENYSSPCPENWIQK 17 (62)
T ss_pred cccCccCCccceec
Confidence 45778999999853
No 19
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=28.49 E-value=31 Score=20.18 Aligned_cols=17 Identities=12% Similarity=0.436 Sum_probs=10.3
Q ss_pred CChHHHHHHHHHhHHHH
Q 034905 18 PTTNQTRHCFTRYIEFH 34 (79)
Q Consensus 18 Pn~nq~k~Cw~~y~~y~ 34 (79)
.+-.+-.+||+++|+.-
T Consensus 21 M~~~eF~~CW~nFV~~~ 37 (55)
T PF05240_consen 21 MTYSEFQYCWENFVDNQ 37 (55)
T ss_dssp --HHHHHHHHHHCB--T
T ss_pred cCcHHHHHHHHHHhcCC
Confidence 34566789999998765
No 20
>smart00695 DUSP Domain in ubiquitin-specific proteases.
Probab=25.85 E-value=71 Score=18.93 Aligned_cols=21 Identities=33% Similarity=0.936 Sum_probs=13.9
Q ss_pred hHHHHHHHHHhhh--hCCCCCCC
Q 034905 59 PGDWIEKWNEQRE--NGTFPGPL 79 (79)
Q Consensus 59 P~~Wve~wde~R~--~g~f~~~~ 79 (79)
+.+|++.|..--. .+..||+|
T Consensus 11 s~~W~~~~~~~~~~~~~~~pGpI 33 (86)
T smart00695 11 STRWYRQWADFVEGKDGKDPGPI 33 (86)
T ss_pred eHHHHHHHHHHhCCCCCCCCCCC
Confidence 4678888876544 45566654
No 21
>KOG3477 consensus Putative cytochrome c oxidase, subunit COX19 [Energy production and conversion]
Probab=24.68 E-value=98 Score=20.12 Aligned_cols=46 Identities=33% Similarity=0.587 Sum_probs=36.1
Q ss_pred CCCCCCCCCChHHHHHHHHHhHHHHHHhhhcCCCchHHHHHHHHHHh
Q 034905 10 TAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRS 56 (79)
Q Consensus 10 t~~~D~RfPn~nq~k~Cw~~y~~y~~C~~~~Ged~~~C~~~~~~y~s 56 (79)
++|---.||--- --.|-.--.+|..|++.+.+..+.|.-+-+-|-.
T Consensus 15 ~pPekGsFPLDH-~geC~~em~eYl~Cl~~k~e~~~eCR~laK~Ylq 60 (97)
T KOG3477|consen 15 IPPEKGSFPLDH-LGECTAEMKEYLGCLKSKAENSEECRLLAKKYLQ 60 (97)
T ss_pred CCcccCCcCCCc-ccccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 567777888532 3458888889999999999999999988777743
No 22
>PTZ00444 hypothetical protein; Provisional
Probab=22.56 E-value=10 Score=27.42 Aligned_cols=15 Identities=27% Similarity=0.924 Sum_probs=13.2
Q ss_pred HHHHHHhhChHHHHH
Q 034905 50 FAKYYRSLCPGDWIE 64 (79)
Q Consensus 50 ~~~~y~s~CP~~Wve 64 (79)
.++-|...||..|++
T Consensus 97 ~kRDYS~~CP~GW~k 111 (184)
T PTZ00444 97 YERDYSYPCPEGWTK 111 (184)
T ss_pred ccccCCCcCCcccee
Confidence 578899999999986
No 23
>TIGR01337 apcB allophycocyanin, beta subunit. The alpha and beta subunits of allophycocyanin form heterodimers, six of which associate into larger aggregates as part of the phycobilisome, a light-harvesting complex of phycobiliproteins and linker proteins. This model describes allophycocyanin beta subunit. Other, homologous phyobiliproteins include allophycocyanin alpha chain and the phycocyanin and phycoerythrin alpha and beta chains.
Probab=20.07 E-value=3.1e+02 Score=19.02 Aligned_cols=61 Identities=13% Similarity=0.143 Sum_probs=42.7
Q ss_pred CCCCCCCCCChHHHHHHHHHhHHHHHHhhh--cCCC----chHH-HHHHHHHHh-hChHHHH-HHHHHhhh
Q 034905 10 TAPADFRFPTTNQTRHCFTRYIEFHRCLAA--KGEE----SNEC-ERFAKYYRS-LCPGDWI-EKWNEQRE 71 (79)
Q Consensus 10 t~~~D~RfPn~nq~k~Cw~~y~~y~~C~~~--~Ged----~~~C-~~~~~~y~s-~CP~~Wv-e~wde~R~ 71 (79)
+.|.-..+|+.. ...||-=..-|.|++.- ...| .+.| .-++..|++ .||..|+ .-....|+
T Consensus 66 ~~~GG~~y~~~r-~~aC~RD~~~~LR~itYailaGd~~~L~~~~L~GlrE~y~~LgvP~~~~v~al~~mk~ 135 (167)
T TIGR01337 66 IRPGGNAYTTRR-YAACLRDIDYYLRYATYAIIAGDNSILEERVLNGLKETYNSLGVPIGPTVRAIQIMKE 135 (167)
T ss_pred CCCCCCCCCHHH-HHHHHHHHHHHhhhhheeeecCCchHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 346666777655 78899999999999882 2223 4445 778999999 6999987 34444333
Done!