Query 034905
Match_columns 79
No_of_seqs 103 out of 278
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 12:15:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034905.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034905hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_H AED, cytochrome C oxida 100.0 1.7E-42 5.9E-47 219.2 8.1 74 6-79 9-85 (85)
2 2lqt_A Coiled-coil-helix-coile 97.3 0.00036 1.2E-08 43.7 4.8 52 25-77 15-66 (85)
3 1ei0_A P8MTCP1; helix-turn-hel 92.5 0.11 3.7E-06 27.6 2.7 33 26-58 3-35 (38)
4 1hp8_A HU-P8; leukemia, cystei 87.2 0.58 2E-05 27.8 3.1 34 25-58 6-39 (68)
5 2lql_A Coiled-coil-helix-coile 85.8 0.38 1.3E-05 30.8 1.9 37 20-56 55-91 (113)
6 2lql_A Coiled-coil-helix-coile 73.2 2.8 9.6E-05 26.7 2.9 52 23-74 12-77 (113)
7 1uzc_A Hypothetical protein FL 30.2 25 0.00086 20.4 1.6 22 10-31 42-66 (71)
8 2dod_A Transcription elongatio 28.8 28 0.00097 20.7 1.7 22 10-31 44-67 (82)
9 2juc_A PRE-mRNA-splicing facto 19.4 77 0.0027 17.9 2.3 20 11-30 34-56 (59)
10 1u96_A Cytochrome C oxidase co 18.4 95 0.0033 18.2 2.6 22 35-56 35-56 (69)
No 1
>1v54_H AED, cytochrome C oxidase polypeptide VIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.51.1.1 PDB: 1oco_H* 1occ_H* 1ocz_H* 1ocr_H* 1v55_H* 2dyr_H* 2dys_H* 2eij_H* 2eik_H* 2eil_H* 2eim_H* 2ein_H* 2occ_H* 2ybb_S* 2zxw_H* 3abk_H* 3abl_H* 3abm_H* 3ag1_H* 3ag2_H* ...
Probab=100.00 E-value=1.7e-42 Score=219.24 Aligned_cols=74 Identities=47% Similarity=1.087 Sum_probs=71.2
Q ss_pred ccccCCCCCCCCCChHHHHHHHHHhHHHHHHhhh---cCCCchHHHHHHHHHHhhChHHHHHHHHHhhhhCCCCCCC
Q 034905 6 IELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAA---KGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPGPL 79 (79)
Q Consensus 6 ~~~~t~~~D~RfPn~nq~k~Cw~~y~~y~~C~~~---~Ged~~~C~~~~~~y~s~CP~~Wve~wde~R~~g~f~~~~ 79 (79)
..++|+|+||||||+|||+|||++|++||+|+++ +|+|.++|++|+++|+|+||++||++|||||++|+|||+|
T Consensus 9 ~~~~tap~D~rFPn~nq~k~Cw~~y~df~~C~~~l~~~ged~~~C~~~~~~y~slCP~sWVe~wdeqR~~g~f~~k~ 85 (85)
T 1v54_H 9 KNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI 85 (85)
T ss_dssp CCCCSCCCCTTSCSSBCHHHHHHHHHHHHHHHHHHHHHTCCGGGGHHHHHHHHHHSCHHHHHHHHHHHHHTCCCSCC
T ss_pred cccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcChHHHHHHHHHHHHhCCCCCCC
Confidence 5689999999999999999999999999999555 9999999999999999999999999999999999999997
No 2
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=97.32 E-value=0.00036 Score=43.69 Aligned_cols=52 Identities=23% Similarity=0.500 Sum_probs=48.4
Q ss_pred HHHHHhHHHHHHhhhcCCCchHHHHHHHHHHhhChHHHHHHHHHhhhhCCCCC
Q 034905 25 HCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPG 77 (79)
Q Consensus 25 ~Cw~~y~~y~~C~~~~Ged~~~C~~~~~~y~s~CP~~Wve~wde~R~~g~f~~ 77 (79)
-|......=++||+.++.|.+.|..++..|+. |-..|++.=-++|.+|+-|.
T Consensus 15 PC~~e~~~S~kCL~~n~yDr~~C~~yF~~Yk~-CKk~W~~v~~eRRr~Gi~P~ 66 (85)
T 2lqt_A 15 PCLSESDASTRCLDENNYDRERCSTYFLRYKN-CRRFWNSIVMQRRKNGVKPF 66 (85)
T ss_dssp CCHHHHHHHHHHHHHTTTCTTTTHHHHHHHHH-HHHHHHHHHHHHHTTCCSCS
T ss_pred ccHHHHHHHHHHHHHcCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCC
Confidence 39999999999999999999999999999985 89999999999999999885
No 3
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=92.54 E-value=0.11 Score=27.57 Aligned_cols=33 Identities=18% Similarity=0.447 Sum_probs=27.7
Q ss_pred HHHHhHHHHHHhhhcCCCchHHHHHHHHHHhhC
Q 034905 26 CFTRYIEFHRCLAAKGEESNECERFAKYYRSLC 58 (79)
Q Consensus 26 Cw~~y~~y~~C~~~~Ged~~~C~~~~~~y~s~C 58 (79)
|-..--+|..||..+|-|.+.|..+...++.-|
T Consensus 3 C~~~a~a~q~CL~~n~~d~skCq~~id~l~~Cc 35 (38)
T 1ei0_A 3 CQKQAAEIQKCLQANSYLESKCQAVIQELKKCA 35 (38)
T ss_dssp SHHHHHHHHHHHHHTTTCGGGTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 444556899999999999999999999887655
No 4
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=87.15 E-value=0.58 Score=27.84 Aligned_cols=34 Identities=24% Similarity=0.556 Sum_probs=28.8
Q ss_pred HHHHHhHHHHHHhhhcCCCchHHHHHHHHHHhhC
Q 034905 25 HCFTRYIEFHRCLAAKGEESNECERFAKYYRSLC 58 (79)
Q Consensus 25 ~Cw~~y~~y~~C~~~~Ged~~~C~~~~~~y~s~C 58 (79)
-|-..--++..||..+|-|.+.|+.+..+|+.-|
T Consensus 6 PC~~~AcaiQ~CL~~N~yd~skCq~~id~L~eCc 39 (68)
T 1hp8_A 6 PCQKQACEIQKCLQANSYMESKCQAVIQELRKCC 39 (68)
T ss_dssp TTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 3666677899999999999999999999887643
No 5
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=85.81 E-value=0.38 Score=30.82 Aligned_cols=37 Identities=14% Similarity=0.431 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhHHHHHHhhhcCCCchHHHHHHHHHHh
Q 034905 20 TNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRS 56 (79)
Q Consensus 20 ~nq~k~Cw~~y~~y~~C~~~~Ged~~~C~~~~~~y~s 56 (79)
+.-.++|-.-+..|+.||+.+..+...|....+.|..
T Consensus 55 ~~I~~~C~~ef~~y~~CL~~n~~~~~~Cr~~~~~f~~ 91 (113)
T 2lql_A 55 RQIRQACAQPFEAFEECLRQNEAAVGNCAEHMRRFLQ 91 (113)
T ss_dssp HHHHHHTHHHHHHHHHHHHHCTTCTTTCCSHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 4567899999999999999999999999888777764
No 6
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=73.15 E-value=2.8 Score=26.65 Aligned_cols=52 Identities=23% Similarity=0.370 Sum_probs=37.7
Q ss_pred HHHHHHHhHHHHHHhhhcCC-C----------chHHHH---HHHHHHhhChHHHHHHHHHhhhhCC
Q 034905 23 TRHCFTRYIEFHRCLAAKGE-E----------SNECER---FAKYYRSLCPGDWIEKWNEQRENGT 74 (79)
Q Consensus 23 ~k~Cw~~y~~y~~C~~~~Ge-d----------~~~C~~---~~~~y~s~CP~~Wve~wde~R~~g~ 74 (79)
.++|-.-..+|++|...+.+ | ...|-. +.+.-++.|..++-.||+=.|.+..
T Consensus 12 ak~C~~~~~~f~~C~~~~~~~dp~~Cl~eg~~vt~Ca~~~p~~~~I~~~C~~ef~~y~~CL~~n~~ 77 (113)
T 2lql_A 12 ARYCGRELEQYGQCVAAKPESWQRDCHYLKMSIAQCTSSHPIIRQIRQACAQPFEAFEECLRQNEA 77 (113)
T ss_dssp --CCHHHHHHHHHHHHHCTTHHHHTCSHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHCTT
T ss_pred HHHccHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHccc
Confidence 46799999999999876543 2 455643 4566677999999999987776643
No 7
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=30.19 E-value=25 Score=20.37 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=17.6
Q ss_pred CCCCCCCC---CChHHHHHHHHHhH
Q 034905 10 TAPADFRF---PTTNQTRHCFTRYI 31 (79)
Q Consensus 10 t~~~D~Rf---Pn~nq~k~Cw~~y~ 31 (79)
..-.|||| ++...|+.+|+.|.
T Consensus 42 ~i~~DpRY~al~~~~eRk~~F~ey~ 66 (71)
T 1uzc_A 42 MIINDPRYSALAKLSEKKQAFNAYK 66 (71)
T ss_dssp HHHTSGGGGGCSSHHHHHHHHHHHH
T ss_pred HHccCccccccCCHHHHHHHHHHHH
Confidence 34579998 57799999998875
No 8
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=28.78 E-value=28 Score=20.72 Aligned_cols=22 Identities=18% Similarity=0.452 Sum_probs=16.8
Q ss_pred CCCCCCCCC--ChHHHHHHHHHhH
Q 034905 10 TAPADFRFP--TTNQTRHCFTRYI 31 (79)
Q Consensus 10 t~~~D~RfP--n~nq~k~Cw~~y~ 31 (79)
-.-.||||- +...|+.+|+.|.
T Consensus 44 ~i~~DpRY~aL~~~eRK~~F~~y~ 67 (82)
T 2dod_A 44 KIVFDPRYLLLNPKERKQVFDQYV 67 (82)
T ss_dssp HHHTCSGGGTSCHHHHHHHHHHHH
T ss_pred HHccCCccccCCHHHHHHHHHHHH
Confidence 346799994 5788888888875
No 9
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae}
Probab=19.41 E-value=77 Score=17.91 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=16.3
Q ss_pred CCCCCCC---CChHHHHHHHHHh
Q 034905 11 APADFRF---PTTNQTRHCFTRY 30 (79)
Q Consensus 11 ~~~D~Rf---Pn~nq~k~Cw~~y 30 (79)
.-.|||| |+...|+.+|+.+
T Consensus 34 i~~DpRY~~l~s~~~R~e~F~ew 56 (59)
T 2juc_A 34 IENDPDFYKIRDDTVRESLFEEW 56 (59)
T ss_dssp HSSSTTGGGSSCHHHHHHHHHHH
T ss_pred ccCCCCeeecCChHHHHHHHHHH
Confidence 4579998 7889999988765
No 10
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A
Probab=18.44 E-value=95 Score=18.22 Aligned_cols=22 Identities=27% Similarity=0.845 Sum_probs=17.4
Q ss_pred HHhhhcCCCchHHHHHHHHHHh
Q 034905 35 RCLAAKGEESNECERFAKYYRS 56 (79)
Q Consensus 35 ~C~~~~Ged~~~C~~~~~~y~s 56 (79)
.|+=.+|++...|+.+-.+|++
T Consensus 35 eCil~~gee~~~C~~lIeahk~ 56 (69)
T 1u96_A 35 TCILFNGQDSEKCKEFIEKYKE 56 (69)
T ss_dssp HHHHHSCSCSGGGHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHH
Confidence 4777889887799988877765
Done!