BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034908
MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY
QLIPTWEFNSGSIFEGFMW

High Scoring Gene Products

Symbol, full name Information P value
AT3G18760 protein from Arabidopsis thaliana 2.1e-22

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034908
        (79 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2094009 - symbol:AT3G18760 species:3702 "Arabi...   260  2.1e-22   1


>TAIR|locus:2094009 [details] [associations]
            symbol:AT3G18760 species:3702 "Arabidopsis thaliana"
            [GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
            [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412 "translation"
            evidence=IEA;ISS] [GO:0019843 "rRNA binding" evidence=IEA]
            InterPro:IPR000529 Pfam:PF01250 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
            EMBL:AB026654 GO:GO:0019843 Gene3D:3.30.70.60 InterPro:IPR014717
            SUPFAM:SSF54995 KO:K02990 EMBL:AY088713 EMBL:BT005196 EMBL:AK118083
            IPI:IPI00532605 RefSeq:NP_566618.1 UniGene:At.26934
            ProteinModelPortal:Q9LSA1 SMR:Q9LSA1 STRING:Q9LSA1 PRIDE:Q9LSA1
            EnsemblPlants:AT3G18760.1 GeneID:821407 KEGG:ath:AT3G18760
            TAIR:At3g18760 HOGENOM:HOG000015167 InParanoid:Q9LSA1 OMA:LMQITMM
            PhylomeDB:Q9LSA1 ProtClustDB:CLSN2688538 ArrayExpress:Q9LSA1
            Genevestigator:Q9LSA1 Uniprot:Q9LSA1
        Length = 139

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 47/61 (77%), Positives = 55/61 (90%)

Query:     1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
             MPLYDCMLL KP +RKE L++LVAR+GKHVY RNGVLT+I SFG V+LGYGI+KLDGR+Y
Sbjct:     1 MPLYDCMLLFKPIIRKEGLIDLVARIGKHVYSRNGVLTEIKSFGKVELGYGIRKLDGRHY 60

Query:    61 Q 61
             Q
Sbjct:    61 Q 61


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.144   0.462    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       79        79   0.00091  102 3  11 22  0.38    29
                                                     29  0.39    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  533 (57 KB)
  Total size of DFA:  104 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.93u 0.15s 8.08t   Elapsed:  00:00:01
  Total cpu time:  7.93u 0.15s 8.08t   Elapsed:  00:00:01
  Start:  Fri May 10 03:30:33 2013   End:  Fri May 10 03:30:34 2013

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