BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034908
(79 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|313586453|gb|ADR71237.1| 30S ribosomal protein S6A [Hevea brasiliensis]
Length = 163
Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/61 (93%), Positives = 60/61 (98%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MPLYDCMLLLKPHVRKE+LM+LVARVGKHVYGRNGVLTDI SFGT+QLGYGIKKLDGRYY
Sbjct: 1 MPLYDCMLLLKPHVRKEALMDLVARVGKHVYGRNGVLTDIKSFGTIQLGYGIKKLDGRYY 60
Query: 61 Q 61
Q
Sbjct: 61 Q 61
>gi|313586455|gb|ADR71238.1| 30S ribosomal protein S6B [Hevea brasiliensis]
Length = 163
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/61 (91%), Positives = 59/61 (96%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MPLYDCMLLLKPHVRKE+LM+LVARVGKHVY RNGVLTDI SFGT+QLGYGIKKLDGRYY
Sbjct: 1 MPLYDCMLLLKPHVRKEALMDLVARVGKHVYARNGVLTDIKSFGTIQLGYGIKKLDGRYY 60
Query: 61 Q 61
Q
Sbjct: 61 Q 61
>gi|224144016|ref|XP_002325157.1| predicted protein [Populus trichocarpa]
gi|222866591|gb|EEF03722.1| predicted protein [Populus trichocarpa]
Length = 136
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/61 (88%), Positives = 59/61 (96%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MPLYDCML+LKPHVRKE+LM+LVARVGKHVY RNGV+TDI SFGTVQLGYGIKKLDGR+Y
Sbjct: 1 MPLYDCMLMLKPHVRKEALMDLVARVGKHVYSRNGVVTDIKSFGTVQLGYGIKKLDGRHY 60
Query: 61 Q 61
Q
Sbjct: 61 Q 61
>gi|225463002|ref|XP_002264271.1| PREDICTED: uncharacterized protein LOC100256785 [Vitis vinifera]
Length = 162
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/61 (88%), Positives = 56/61 (91%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MP YDCMLLLKPHV KESLM+LVARVGKHVY RNGVLTDI SFG V+LGYGIKKLDGRYY
Sbjct: 1 MPFYDCMLLLKPHVNKESLMDLVARVGKHVYRRNGVLTDIKSFGIVRLGYGIKKLDGRYY 60
Query: 61 Q 61
Q
Sbjct: 61 Q 61
>gi|449529120|ref|XP_004171549.1| PREDICTED: 37S ribosomal protein MRP17, mitochondrial-like
[Cucumis sativus]
Length = 153
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/61 (78%), Positives = 55/61 (90%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MPLYD M L+KPHV+KE+L++LVARVGKHV+ RNGV+ DI SFG VQLGYGIKKLDGRYY
Sbjct: 1 MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYY 60
Query: 61 Q 61
Q
Sbjct: 61 Q 61
>gi|145332631|ref|NP_001078181.1| small subunit ribosomal protein S6 [Arabidopsis thaliana]
gi|332642622|gb|AEE76143.1| small subunit ribosomal protein S6 [Arabidopsis thaliana]
Length = 134
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/62 (75%), Positives = 56/62 (90%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MPLYDCMLL KP +RKE L++LVAR+GKHVY RNGVLT+I SFG V+LGYGI+KLDGR+Y
Sbjct: 1 MPLYDCMLLFKPIIRKEGLIDLVARIGKHVYSRNGVLTEIKSFGKVELGYGIRKLDGRHY 60
Query: 61 QL 62
Q+
Sbjct: 61 QI 62
>gi|449463238|ref|XP_004149341.1| PREDICTED: LOW QUALITY PROTEIN: 37S ribosomal protein MRP17,
mitochondrial-like [Cucumis sativus]
Length = 140
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/61 (78%), Positives = 55/61 (90%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MPLYD M L+KPHV+KE+L++LVARVGKHV+ RNGV+ DI SFG VQLGYGIKKLDGRYY
Sbjct: 1 MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYY 60
Query: 61 Q 61
Q
Sbjct: 61 Q 61
>gi|18401997|ref|NP_566618.1| small subunit ribosomal protein S6 [Arabidopsis thaliana]
gi|9293899|dbj|BAB01802.1| unnamed protein product [Arabidopsis thaliana]
gi|21617981|gb|AAM67031.1| unknown [Arabidopsis thaliana]
gi|26451219|dbj|BAC42712.1| unknown protein [Arabidopsis thaliana]
gi|28827770|gb|AAO50729.1| unknown protein [Arabidopsis thaliana]
gi|332642621|gb|AEE76142.1| small subunit ribosomal protein S6 [Arabidopsis thaliana]
Length = 139
Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/61 (77%), Positives = 55/61 (90%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MPLYDCMLL KP +RKE L++LVAR+GKHVY RNGVLT+I SFG V+LGYGI+KLDGR+Y
Sbjct: 1 MPLYDCMLLFKPIIRKEGLIDLVARIGKHVYSRNGVLTEIKSFGKVELGYGIRKLDGRHY 60
Query: 61 Q 61
Q
Sbjct: 61 Q 61
>gi|297834792|ref|XP_002885278.1| ribosomal protein S6 family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297331118|gb|EFH61537.1| ribosomal protein S6 family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 139
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/61 (77%), Positives = 55/61 (90%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MPLYDCMLL KP +RKE L++LVAR+GKHVY RNGVLT+I SFG V+LGYGI+KLDGR+Y
Sbjct: 1 MPLYDCMLLFKPIIRKEGLIDLVARIGKHVYSRNGVLTEIKSFGKVELGYGIRKLDGRHY 60
Query: 61 Q 61
Q
Sbjct: 61 Q 61
>gi|255565089|ref|XP_002523537.1| structural constituent of ribosome, putative [Ricinus communis]
gi|223537244|gb|EEF38876.1| structural constituent of ribosome, putative [Ricinus communis]
Length = 162
Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 55/61 (90%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MPLYDCMLLLKPH+ KE++++LVARVGKHV RNGVLTD+ SFGT+QLGYGIKK + RY+
Sbjct: 1 MPLYDCMLLLKPHIHKEAVIDLVARVGKHVQSRNGVLTDMKSFGTIQLGYGIKKRENRYF 60
Query: 61 Q 61
Q
Sbjct: 61 Q 61
>gi|388497172|gb|AFK36652.1| unknown [Lotus japonicus]
Length = 149
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 53/61 (86%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MP YDCMLL KPHV KE+L++LV RVGKHVY RNGV+TDI S+G + LGYGIKKLDGR+Y
Sbjct: 1 MPPYDCMLLFKPHVEKEALIDLVTRVGKHVYRRNGVVTDIKSYGMIHLGYGIKKLDGRFY 60
Query: 61 Q 61
Q
Sbjct: 61 Q 61
>gi|351722084|ref|NP_001235696.1| uncharacterized protein LOC100500532 [Glycine max]
gi|255630573|gb|ACU15646.1| unknown [Glycine max]
Length = 144
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 52/61 (85%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MP YDCM L KPH+RKE++M+LV RVGKHV RNGV+TDI S G VQLGYG+KKLDGRYY
Sbjct: 1 MPPYDCMFLFKPHIRKEAVMDLVVRVGKHVCRRNGVVTDIKSLGKVQLGYGVKKLDGRYY 60
Query: 61 Q 61
Q
Sbjct: 61 Q 61
>gi|296084586|emb|CBI25607.3| unnamed protein product [Vitis vinifera]
Length = 156
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/55 (89%), Positives = 51/55 (92%)
Query: 7 MLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQ 61
MLLLKPHV KESLM+LVARVGKHVY RNGVLTDI SFG V+LGYGIKKLDGRYYQ
Sbjct: 1 MLLLKPHVNKESLMDLVARVGKHVYRRNGVLTDIKSFGIVRLGYGIKKLDGRYYQ 55
>gi|217075210|gb|ACJ85965.1| unknown [Medicago truncatula]
Length = 145
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 54/61 (88%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MP YDCMLL KP+V+KE+L+ LVAR+GKHV RNGV+T++ SFGTVQLGYG+KK DGR+Y
Sbjct: 1 MPPYDCMLLFKPNVKKEALISLVARIGKHVCKRNGVVTEVKSFGTVQLGYGVKKRDGRFY 60
Query: 61 Q 61
Q
Sbjct: 61 Q 61
>gi|351724233|ref|NP_001235771.1| uncharacterized protein LOC100305721 [Glycine max]
gi|255626419|gb|ACU13554.1| unknown [Glycine max]
Length = 144
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 51/61 (83%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MP YDCM L KPH+RKE++M+LV RVGKHV RNGV+ DI S G VQLGYG+KKLDGRYY
Sbjct: 1 MPPYDCMFLFKPHIRKEAVMDLVVRVGKHVCRRNGVVIDIKSLGRVQLGYGVKKLDGRYY 60
Query: 61 Q 61
Q
Sbjct: 61 Q 61
>gi|388513927|gb|AFK45025.1| unknown [Medicago truncatula]
Length = 144
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 54/61 (88%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MP YDCMLL KP+V+KE+L+ LV+R+GKHV RNGV+T++ SFGT+QLGYG+KK DGR+Y
Sbjct: 1 MPPYDCMLLFKPNVKKEALIGLVSRIGKHVCKRNGVVTEVKSFGTIQLGYGVKKRDGRFY 60
Query: 61 Q 61
Q
Sbjct: 61 Q 61
>gi|326533654|dbj|BAK05358.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 151
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MPLYDCML++KP V KE++ ELVARV Y RNGV+TD+ SFG V LGYGI+KLDGR++
Sbjct: 1 MPLYDCMLMVKPMVTKEAIAELVARVAARAYQRNGVVTDLKSFGKVHLGYGIRKLDGRHF 60
Query: 61 Q 61
Q
Sbjct: 61 Q 61
>gi|294464375|gb|ADE77700.1| unknown [Picea sitchensis]
Length = 158
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 51/60 (85%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MPLYDCMLLLKP V + +++ELVAR+G+ V+ NGV+TDI SFG V LGYGIKKLDGR+Y
Sbjct: 1 MPLYDCMLLLKPKVERTAIIELVARLGRRVHSLNGVVTDIKSFGKVYLGYGIKKLDGRFY 60
>gi|116779187|gb|ABK21174.1| unknown [Picea sitchensis]
Length = 163
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 51/60 (85%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MPLYDCMLLLKP V + +++EL++R+G+ VY NGV+TDI SFG V LGYGI+KLDGRYY
Sbjct: 1 MPLYDCMLLLKPQVERAAIVELLSRLGRRVYSLNGVVTDIKSFGKVYLGYGIRKLDGRYY 60
>gi|218187764|gb|EEC70191.1| hypothetical protein OsI_00930 [Oryza sativa Indica Group]
gi|222617997|gb|EEE54129.1| hypothetical protein OsJ_00911 [Oryza sativa Japonica Group]
Length = 179
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MPLYDCMLL+KP V +E++ ELV RV + Y RNGV+TD+ SFGT+ LGYGIKKLDGR++
Sbjct: 1 MPLYDCMLLVKPLVTREAMAELVGRVARRAYQRNGVVTDVKSFGTICLGYGIKKLDGRHF 60
Query: 61 Q 61
+
Sbjct: 61 K 61
>gi|115435334|ref|NP_001042425.1| Os01g0220300 [Oryza sativa Japonica Group]
gi|8096641|dbj|BAA96212.1| unknown protein [Oryza sativa Japonica Group]
gi|113531956|dbj|BAF04339.1| Os01g0220300 [Oryza sativa Japonica Group]
gi|215740466|dbj|BAG97122.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 146
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MPLYDCMLL+KP V +E++ ELV RV + Y RNGV+TD+ SFGT+ LGYGIKKLDGR++
Sbjct: 1 MPLYDCMLLVKPLVTREAMAELVGRVARRAYQRNGVVTDVKSFGTICLGYGIKKLDGRHF 60
Query: 61 Q 61
+
Sbjct: 61 K 61
>gi|357128010|ref|XP_003565669.1| PREDICTED: uncharacterized protein LOC100840407 [Brachypodium
distachyon]
Length = 146
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 49/61 (80%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MPLYDCMLL+KP V KE++ ELV RV Y RNGV+T++ SFG V LGYGIKKLDGR++
Sbjct: 1 MPLYDCMLLVKPMVTKEAVAELVTRVAGRAYQRNGVVTELKSFGKVHLGYGIKKLDGRHF 60
Query: 61 Q 61
Q
Sbjct: 61 Q 61
>gi|242055939|ref|XP_002457115.1| hypothetical protein SORBIDRAFT_03g001540 [Sorghum bicolor]
gi|241929090|gb|EES02235.1| hypothetical protein SORBIDRAFT_03g001540 [Sorghum bicolor]
Length = 162
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 48/61 (78%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MPLYDCMLL+KP V +E + +LV RV + RNGV+TD+ SFG V LGYGIKKLDGR++
Sbjct: 1 MPLYDCMLLVKPTVTREVVADLVTRVARRACQRNGVVTDVKSFGKVNLGYGIKKLDGRHF 60
Query: 61 Q 61
Q
Sbjct: 61 Q 61
>gi|226508136|ref|NP_001143791.1| uncharacterized protein LOC100276559 [Zea mays]
gi|195627110|gb|ACG35385.1| hypothetical protein [Zea mays]
Length = 163
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 46/61 (75%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MPLYDCMLLLK V +E L ELV RV + RNGV+TD+ SFG V L YGI+KLDGR++
Sbjct: 1 MPLYDCMLLLKTTVTREVLAELVTRVARRACQRNGVVTDVKSFGKVSLAYGIRKLDGRHF 60
Query: 61 Q 61
Q
Sbjct: 61 Q 61
>gi|168017341|ref|XP_001761206.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687546|gb|EDQ73928.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 108
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 48/61 (78%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MPLYD ++++KP V + L+EL+ R+G+ VY RNGV+T+I SFG V L YGI+K DGR++
Sbjct: 1 MPLYDFVVMVKPAVDRRGLVELMKRLGERVYSRNGVVTNIKSFGRVNLAYGIRKRDGRFF 60
Query: 61 Q 61
+
Sbjct: 61 E 61
>gi|395146551|gb|AFN53704.1| putative secretory carrier membrane protein [Linum usitatissimum]
Length = 418
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 42/51 (82%)
Query: 11 KPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQ 61
+P V + S+M L+ R+G HV RNGV+T++ SFGT+QLGYGIKKLDGR+++
Sbjct: 274 EPQVDRTSIMSLMTRIGNHVATRNGVVTEVKSFGTIQLGYGIKKLDGRFFK 324
>gi|302789920|ref|XP_002976728.1| hypothetical protein SELMODRAFT_105261 [Selaginella
moellendorffii]
gi|300155766|gb|EFJ22397.1| hypothetical protein SELMODRAFT_105261 [Selaginella
moellendorffii]
Length = 123
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MPLYD ++ KP V ++ + +++ R+G VY + GV+TD+ FG L Y IKK DGR+Y
Sbjct: 1 MPLYDVFVIFKPLVERKVMTDILVRIGHKVYQQKGVVTDVKYFGRQFLAYDIKKRDGRHY 60
Query: 61 Q 61
+
Sbjct: 61 E 61
>gi|302782710|ref|XP_002973128.1| hypothetical protein SELMODRAFT_99143 [Selaginella
moellendorffii]
gi|300158881|gb|EFJ25502.1| hypothetical protein SELMODRAFT_99143 [Selaginella
moellendorffii]
Length = 123
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 41/61 (67%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MPLYD ++ KP V ++ + +++ R+G VY + GV+T++ FG L Y IKK DGR+Y
Sbjct: 1 MPLYDVFVIFKPLVERKVMTDILVRIGHKVYQQKGVVTNVKYFGRQFLAYDIKKRDGRHY 60
Query: 61 Q 61
+
Sbjct: 61 E 61
>gi|412992365|emb|CCO20078.1| predicted protein [Bathycoccus prasinos]
Length = 145
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MPLYD +L +K V K + EL+ R + +GVL D+ SFG L Y KK + R++
Sbjct: 1 MPLYDLVLQVKARVPKREVFELLKRTSLKILDSDGVLMDVKSFGHQTLAYVYKKPNERHH 60
Query: 61 QL 62
++
Sbjct: 61 EV 62
>gi|255084283|ref|XP_002508716.1| predicted protein [Micromonas sp. RCC299]
gi|226523993|gb|ACO69974.1| predicted protein [Micromonas sp. RCC299]
Length = 160
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M LY+ M+++K + L +++ R G V GV+TDITSFGT L Y K R++
Sbjct: 1 MVLYELMVMVKSATPRAQLADILRRAGTRVLDAGGVITDITSFGTRPLAYEFKSPGERHF 60
Query: 61 Q 61
+
Sbjct: 61 E 61
>gi|307108495|gb|EFN56735.1| hypothetical protein CHLNCDRAFT_144161 [Chlorella variabilis]
Length = 143
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MPLY+ L KP + K+++ ++ V V + GV+TDI S+G +L Y I++ R+
Sbjct: 1 MPLYELFALAKPQLGKKAIASIMKAVASKVMEQGGVVTDIRSYGERKLAYDIRQPGVRHK 60
Query: 61 QLIPTWEFN 69
+ W+ N
Sbjct: 61 EAA-MWQIN 68
>gi|303287432|ref|XP_003063005.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455641|gb|EEH52944.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 200
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKK 54
M LYD + +K V + + +++ ++G V GV+TDITSFGT L Y I+K
Sbjct: 1 MVLYDMFIAVKSTVPRSQMADVLRKMGHRVLDAGGVITDITSFGTQTLAYQIRK 54
>gi|406934525|gb|EKD68794.1| 30S ribosomal protein S6 [uncultured bacterium]
Length = 108
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+CM+LL P + + +++A+V + + VL +G +L Y IKK++ YY
Sbjct: 1 MKAYECMVLLDPTFNETDIEKMIAKVEEQIQKSGNVLETTNRWGKRKLAYEIKKVNEAYY 60
Query: 61 QL 62
L
Sbjct: 61 VL 62
>gi|384247780|gb|EIE21266.1| mitochondrial ribosomal protein S6, partial [Coccomyxa
subellipsoidea C-169]
Length = 97
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
MPLY+ + +P + + +L+ V + G+LTDI S+G +L Y I++
Sbjct: 1 MPLYELFCMARPALARTEASQLMRNAASAVLSKGGLLTDIKSYGQRELAYEIRR------ 54
Query: 61 QLIPTWEFNSGSIFEGFMW 79
P + N E FMW
Sbjct: 55 ---PGMKIN-----EAFMW 65
>gi|159489677|ref|XP_001702823.1| mitochondrial ribosomal protein S6 [Chlamydomonas reinhardtii]
gi|158271040|gb|EDO96868.1| mitochondrial ribosomal protein S6 [Chlamydomonas reinhardtii]
Length = 122
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKK 54
MPLY+ ++L KP + + ++ L+ +G VY G +T + SFG L Y +++
Sbjct: 1 MPLYELLMLAKPSLPRAEMVALIKGLGDLVYRNGGFVTSLKSFGDQHLAYDLRR 54
>gi|145341069|ref|XP_001415638.1| Putative mitochondrial ribosomal protein S6 [Ostreococcus
lucimarinus CCE9901]
gi|144575861|gb|ABO93930.1| Putative mitochondrial ribosomal protein S6 [Ostreococcus
lucimarinus CCE9901]
Length = 126
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M LYD M+++ V K + +++ R+G V GV+T++ S+G L Y ++ +++
Sbjct: 1 MVLYDAMIVVSAKVPKTACADVLRRLGASVMDAGGVVTNVASYGARTLAYEFRRPGEKHF 60
Query: 61 Q 61
+
Sbjct: 61 E 61
>gi|169832353|ref|YP_001718335.1| 30S ribosomal protein S6 [Candidatus Desulforudis audaxviator
MP104C]
gi|226703452|sp|B1I6T1.1|RS6_DESAP RecName: Full=30S ribosomal protein S6
gi|169639197|gb|ACA60703.1| ribosomal protein S6 [Candidatus Desulforudis audaxviator MP104C]
Length = 94
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIK 53
M Y+ M +LKP + E +L+ + K + R+G +T++ +G +L Y IK
Sbjct: 1 MRQYEVMYILKPDLEDEESTQLIEKFSKIITDRDGEITELNRWGKRRLAYEIK 53
>gi|332654783|ref|ZP_08420525.1| ribosomal protein S6 [Ruminococcaceae bacterium D16]
gi|332516126|gb|EGJ45734.1| ribosomal protein S6 [Ruminococcaceae bacterium D16]
Length = 98
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQLI 63
Y+ M +L P + +E++ LVA+ K V NG +++I +G +L Y I L YY L+
Sbjct: 8 YEAMYILDPALSEEAIAALVAKF-KAVVEANGTVSEIDEWGKRRLAYPINDLMEGYYVLM 66
Query: 64 PTWEFNSGS 72
FN+ +
Sbjct: 67 T---FNAAA 72
>gi|312112740|ref|YP_003991056.1| 30S ribosomal protein S6 [Geobacillus sp. Y4.1MC1]
gi|336237206|ref|YP_004589822.1| 30S ribosomal protein S6 [Geobacillus thermoglucosidasius
C56-YS93]
gi|423721700|ref|ZP_17695882.1| 30S ribosomal protein S6 [Geobacillus thermoglucosidans
TNO-09.020]
gi|311217841|gb|ADP76445.1| ribosomal protein S6 [Geobacillus sp. Y4.1MC1]
gi|335364061|gb|AEH49741.1| 30S ribosomal protein S6 [Geobacillus thermoglucosidasius
C56-YS93]
gi|383365503|gb|EID42799.1| 30S ribosomal protein S6 [Geobacillus thermoglucosidans
TNO-09.020]
Length = 95
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M +++P++ E+ LV R + +T++T +G +L Y IKK YY
Sbjct: 1 MRKYEIMYIIRPNLDDEARQALVDRFNNILKENGAEITNVTDWGKRRLAYEIKKYRDGYY 60
Query: 61 QLI 63
+I
Sbjct: 61 MII 63
>gi|410479141|ref|YP_006766778.1| 30S ribosomal protein S6 [Leptospirillum ferriphilum ML-04]
gi|424867700|ref|ZP_18291480.1| Ribosomal protein S6 [Leptospirillum sp. Group II 'C75']
gi|124514470|gb|EAY55983.1| ribosomal protein S6 [Leptospirillum rubarum]
gi|387221754|gb|EIJ76267.1| Ribosomal protein S6 [Leptospirillum sp. Group II 'C75']
gi|406774393|gb|AFS53818.1| ribosomal protein S6 [Leptospirillum ferriphilum ML-04]
Length = 122
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKK 54
M Y+C+LL+K ++ E + ++A+ V R G + + G +L Y +KK
Sbjct: 1 MAFYECVLLIKSNLSDEEIASVLAKFQNLVVSREGTVHHVQKMGKRRLSYELKK 54
>gi|226315509|ref|YP_002775405.1| 30S ribosomal protein S6 [Brevibacillus brevis NBRC 100599]
gi|398814756|ref|ZP_10573434.1| ribosomal protein S6 [Brevibacillus sp. BC25]
gi|254765223|sp|C0ZA47.1|RS6_BREBN RecName: Full=30S ribosomal protein S6
gi|226098459|dbj|BAH46901.1| 30S ribosomal protein S6 [Brevibacillus brevis NBRC 100599]
gi|398035844|gb|EJL29070.1| ribosomal protein S6 [Brevibacillus sp. BC25]
Length = 95
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M +L+P + +E + VAR V G ++ + G +L Y I K YY
Sbjct: 1 MRQYEVMYVLRPDLEEEKVKSNVARYSDVVTNYGGEISKLQEMGKRRLAYEINKFREGYY 60
Query: 61 QLIPTWEFNSGSIFEG 76
L+ ++ NS ++ E
Sbjct: 61 VLM-NFKANSDAVAEA 75
>gi|301062690|ref|ZP_07203308.1| ribosomal protein S6 [delta proteobacterium NaphS2]
gi|300443213|gb|EFK07360.1| ribosomal protein S6 [delta proteobacterium NaphS2]
Length = 137
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ + ++ P++ E +VA+ V GV+T + +G L Y IKK D +Y
Sbjct: 1 MRYYETLYIINPNLADEDYRAVVAKFTDVVEKNGGVVTKVDEWGKKTLAYDIKKFDKGFY 60
Query: 61 QLI 63
L+
Sbjct: 61 VLL 63
>gi|399048525|ref|ZP_10740010.1| ribosomal protein S6 [Brevibacillus sp. CF112]
gi|433543028|ref|ZP_20499443.1| 30S ribosomal protein S6 [Brevibacillus agri BAB-2500]
gi|398053587|gb|EJL45761.1| ribosomal protein S6 [Brevibacillus sp. CF112]
gi|432185702|gb|ELK43188.1| 30S ribosomal protein S6 [Brevibacillus agri BAB-2500]
Length = 95
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M +L+P + +E + VAR + V G ++ + G +L Y I K YY
Sbjct: 1 MRQYEVMYVLRPDLEEEKVKSNVARYSEIVTNYGGEISKLQEMGKRRLAYEINKFREGYY 60
Query: 61 QLIPTWEFNSGSIFEG 76
L+ ++ N+ ++ E
Sbjct: 61 VLM-NFKANADAVAEA 75
>gi|222054668|ref|YP_002537030.1| 30S ribosomal protein S6 [Geobacter daltonii FRC-32]
gi|254765439|sp|B9M5U8.1|RS6_GEOSF RecName: Full=30S ribosomal protein S6
gi|221563957|gb|ACM19929.1| ribosomal protein S6 [Geobacter daltonii FRC-32]
Length = 128
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLD-GRY 59
M +Y+ + +++P + +E L + ARV + + G L + +G +L Y I+K + GRY
Sbjct: 1 MRMYETIFIVQPDLGEEELKGISARVQEVIVSMKGELKRLEDWGARKLAYPIEKFNRGRY 60
Query: 60 YQL 62
Y L
Sbjct: 61 YYL 63
>gi|163815609|ref|ZP_02206982.1| hypothetical protein COPEUT_01784 [Coprococcus eutactus ATCC
27759]
gi|158449246|gb|EDP26241.1| ribosomal protein S6 [Coprococcus eutactus ATCC 27759]
Length = 96
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ L++ + +E+ +V +V ++ N +TD+ G +L Y I+K+ YY
Sbjct: 1 MNKYELTLVVSAKIDEEARTAVVDKVKSYIEKANATITDVNECGLKKLAYEIQKMGEAYY 60
Query: 61 QLI 63
I
Sbjct: 61 YFI 63
>gi|242006510|ref|XP_002424093.1| mitochondrial 28S ribosomal protein S6, putative [Pediculus
humanus corporis]
gi|212507399|gb|EEB11355.1| mitochondrial 28S ribosomal protein S6, putative [Pediculus
humanus corporis]
Length = 175
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGR 58
MPLYD ++ +K H+ ++ L ++ R K+V G+L I + G +L GIK + R
Sbjct: 19 MPLYDLIVFVK-HLNRDFLKTVLTRNAKYVIESGGLLRSIENLGLNELHRGIKPKNSR 75
>gi|435855256|ref|YP_007316575.1| ribosomal protein S6 [Halobacteroides halobius DSM 5150]
gi|433671667|gb|AGB42482.1| ribosomal protein S6 [Halobacteroides halobius DSM 5150]
Length = 94
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M +L + +E+ LV ++ + +G L D+ +GT +L Y I YY
Sbjct: 1 MRKYETMFILNSDLEEEATESLVEKLTGVIADNDGELVDVDEWGTKELAYEINDQKAGYY 60
Query: 61 QLI 63
++
Sbjct: 61 TVV 63
>gi|220933168|ref|YP_002510076.1| 30S ribosomal protein S6 [Halothermothrix orenii H 168]
gi|219994478|gb|ACL71081.1| ribosomal protein S6 [Halothermothrix orenii H 168]
Length = 95
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ ++KP + +E+ ++ RV + + G + ++ +G L Y IK + YY
Sbjct: 1 MRAYETTFIIKPDLEEEARNNILDRVKEIIDTNGGKVNEVDEWGDRNLAYEIKNYNTGYY 60
Query: 61 QLIP 64
LI
Sbjct: 61 TLIK 64
>gi|312144684|ref|YP_003996130.1| 30S ribosomal protein S6 [Halanaerobium hydrogeniformans]
gi|311905335|gb|ADQ15776.1| ribosomal protein S6 [Halanaerobium hydrogeniformans]
Length = 99
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIK 53
Y+ +LKP + E +++ RV + +G +T++ ++G QL Y IK
Sbjct: 8 YETTFVLKPDLEDEEKEQILTRVKNTILDHDGEITEVDAWGKRQLAYEIK 57
>gi|56422017|ref|YP_149335.1| 30S ribosomal protein S6 [Geobacillus kaustophilus HTA426]
gi|261420891|ref|YP_003254573.1| 30S ribosomal protein S6 [Geobacillus sp. Y412MC61]
gi|297531676|ref|YP_003672951.1| ribosomal protein S6 [Geobacillus sp. C56-T3]
gi|319768562|ref|YP_004134063.1| 30S ribosomal protein S6 [Geobacillus sp. Y412MC52]
gi|375010664|ref|YP_004984297.1| 30S ribosomal protein S6 [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|448239754|ref|YP_007403812.1| 30S ribosomal protein S6 [Geobacillus sp. GHH01]
gi|61215358|sp|Q5KU69.1|RS6_GEOKA RecName: Full=30S ribosomal protein S6
gi|56381859|dbj|BAD77767.1| 30S ribosomal protein S6 (BS9) [Geobacillus kaustophilus HTA426]
gi|261377348|gb|ACX80091.1| ribosomal protein S6 [Geobacillus sp. Y412MC61]
gi|297254928|gb|ADI28374.1| ribosomal protein S6 [Geobacillus sp. C56-T3]
gi|317113428|gb|ADU95920.1| ribosomal protein S6 [Geobacillus sp. Y412MC52]
gi|359289513|gb|AEV21197.1| 30S ribosomal protein S6 [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|445208596|gb|AGE24061.1| 30S ribosomal protein S6 [Geobacillus sp. GHH01]
Length = 95
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGV-LTDITSFGTVQLGYGIKKLDGRY 59
M Y+ M +++P++ E+ LV R +V NG +T++T +G +L Y I+K Y
Sbjct: 1 MRKYEIMYIIRPNMDDEARQALVERFN-NVLKENGAEITNVTDWGKRRLAYEIQKYRDGY 59
Query: 60 YQLI 63
Y ++
Sbjct: 60 YMIV 63
>gi|89100932|ref|ZP_01173779.1| ribosomal protein S6 (BS9) [Bacillus sp. NRRL B-14911]
gi|89084341|gb|EAR63495.1| ribosomal protein S6 (BS9) [Bacillus sp. NRRL B-14911]
Length = 95
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M +++P++ E+ LV R + LT+ +G +L Y I YY
Sbjct: 1 MRKYEIMYVIRPNIEDEAKKALVERFNSILTDNGAELTESKDWGKRRLAYEINDFRDGYY 60
Query: 61 QLI 63
QLI
Sbjct: 61 QLI 63
>gi|339006740|ref|ZP_08639315.1| 30S ribosomal protein S6 [Brevibacillus laterosporus LMG 15441]
gi|421874902|ref|ZP_16306501.1| ribosomal protein S6 [Brevibacillus laterosporus GI-9]
gi|338775949|gb|EGP35477.1| 30S ribosomal protein S6 [Brevibacillus laterosporus LMG 15441]
gi|372456099|emb|CCF16050.1| ribosomal protein S6 [Brevibacillus laterosporus GI-9]
Length = 95
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M +L+P + +E + VAR + V G +T + G +L Y I+K +Y
Sbjct: 1 MRQYEVMYVLRPDLEEEKVKANVARYSEIVTNNGGEITKLQEMGKRRLAYEIQKFKDGFY 60
Query: 61 QLI 63
L+
Sbjct: 61 VLM 63
>gi|346225996|ref|ZP_08847138.1| outer membrane protein Omp121 [Anaerophaga thermohalophila DSM
12881]
Length = 1058
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 39 DITSFGTVQLGYGIKKLDGRYYQLIPTWEFNSGSIFEGF 77
DI SFG V+L YG D YQ++P FN G+I+ F
Sbjct: 652 DILSFGKVRLAYGKTGRDAAPYQVLPY--FNQGAIYNEF 688
>gi|225181167|ref|ZP_03734613.1| ribosomal protein S6 [Dethiobacter alkaliphilus AHT 1]
gi|225168136|gb|EEG76941.1| ribosomal protein S6 [Dethiobacter alkaliphilus AHT 1]
Length = 96
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKK 54
M Y+ M +LKP + +E+ LV R + G +T++ G +L Y +KK
Sbjct: 1 MNKYETMFILKPELEEEAYDTLVERFKGILEGEGAEVTNVNRMGRRKLAYEVKK 54
>gi|385800970|ref|YP_005837374.1| 30S ribosomal protein S6 [Halanaerobium praevalens DSM 2228]
gi|309390334|gb|ADO78214.1| ribosomal protein S6 [Halanaerobium praevalens DSM 2228]
Length = 99
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQLI 63
Y+ +LKP + E ++ RV + G +T++ ++G QL Y IK Y ++
Sbjct: 8 YETTFVLKPDLEDEEKQTILKRVKSAISEHEGEVTEVDAWGKKQLAYEIKDYRSGDYTIL 67
Query: 64 PTWEFNSGS 72
EFN+ +
Sbjct: 68 ---EFNAQT 73
>gi|365843154|ref|ZP_09384107.1| ribosomal protein S6 [Flavonifractor plautii ATCC 29863]
gi|373118233|ref|ZP_09532366.1| ribosomal protein S6 [Lachnospiraceae bacterium 7_1_58FAA]
gi|364573162|gb|EHM50672.1| ribosomal protein S6 [Flavonifractor plautii ATCC 29863]
gi|371667543|gb|EHO32667.1| ribosomal protein S6 [Lachnospiraceae bacterium 7_1_58FAA]
Length = 99
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQLI 63
Y+ + +L P++ +E+ +VA+ K + +NG L ++ +G L Y I L YY L+
Sbjct: 8 YEVVFILNPNLDEEATAAMVAKF-KTLVEQNGTLAEVEEWGKRHLAYPINDLTEGYYVLM 66
Query: 64 PTWEFNSGSIF 74
FN+ F
Sbjct: 67 T---FNAKPEF 74
>gi|20809110|ref|NP_624281.1| 30S ribosomal protein S6 [Thermoanaerobacter tengcongensis MB4]
gi|24212292|sp|Q8R6M1.1|RS6_THETN RecName: Full=30S ribosomal protein S6
gi|20517788|gb|AAM25885.1| Ribosomal protein S6 [Thermoanaerobacter tengcongensis MB4]
Length = 95
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M +L P + +E L+ R + R G +T+ +G +L Y I+K YY
Sbjct: 1 MRSYETMYVLSPDLNEEERKGLIERFKNLIVERGGEITNFDEWGKRKLAYPIQKKSEGYY 60
Query: 61 QLIPTWEFNSG 71
L+ FNS
Sbjct: 61 VLM---NFNSS 68
>gi|379013352|ref|YP_005271164.1| 30S ribosomal protein S6 [Acetobacterium woodii DSM 1030]
gi|375304141|gb|AFA50275.1| 30S ribosomal protein S6 [Acetobacterium woodii DSM 1030]
Length = 95
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGI-KKLDGRY 59
M Y+ + +LKP + KE++ ELV +V K V G + + +G +L Y I KK +
Sbjct: 1 MRKYETLFVLKPDLEKEAIEELVGKV-KAVIEAAGEIEKVDEWGKRKLAYEIDKKYQEGF 59
Query: 60 YQLIPTWEFNS 70
Y L+ NS
Sbjct: 60 YVLVDFKAENS 70
>gi|227500386|ref|ZP_03930448.1| ribosomal protein S6 [Anaerococcus tetradius ATCC 35098]
gi|227217449|gb|EEI82768.1| ribosomal protein S6 [Anaerococcus tetradius ATCC 35098]
Length = 94
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ +L+ K + + L+ R K + G+NG +T + +G +L Y I L YY
Sbjct: 1 MNKYEAVLIFKADMADSDRIALLDRF-KEIIGQNGEVTSVDDWGRRKLAYEINDLKEGYY 59
Query: 61 QLIPTWEFNSG 71
++ +FNS
Sbjct: 60 YIV---DFNSN 67
>gi|375307108|ref|ZP_09772398.1| MarR family transcriptional regulator [Paenibacillus sp. Aloe-11]
gi|375080826|gb|EHS59044.1| MarR family transcriptional regulator [Paenibacillus sp. Aloe-11]
Length = 158
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 29 HVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQLIPTWEFNSGSIFEGFM 78
H R GVL +T+FG + +K + +YQ I TWE S E F+
Sbjct: 96 HPEDRRGVLISLTAFGREKALNALKVKENEFYQRISTWE---DSKLEAFI 142
>gi|390455032|ref|ZP_10240560.1| MarR family transcriptional regulator [Paenibacillus peoriae KCTC
3763]
Length = 158
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 29 HVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQLIPTWEFNSGSIFEGFM 78
H R GVL +T FG + +K+ + +YQ I TWE + F G +
Sbjct: 96 HPEDRRGVLISLTVFGREKALDALKEKENEFYQRISTWEDSKLEAFIGML 145
>gi|196249875|ref|ZP_03148571.1| ribosomal protein S6 [Geobacillus sp. G11MC16]
gi|196210751|gb|EDY05514.1| ribosomal protein S6 [Geobacillus sp. G11MC16]
Length = 95
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 34/63 (53%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M +++P++ E+ +V R + + +T++T +G +L Y I+K YY
Sbjct: 1 MRKYEIMYIIRPNMDDEARQAVVERFNNVLKEKGAEITNVTDWGKRRLAYEIEKYRDGYY 60
Query: 61 QLI 63
++
Sbjct: 61 MIL 63
>gi|206602645|gb|EDZ39126.1| Ribosomal protein S6 [Leptospirillum sp. Group II '5-way CG']
Length = 122
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKK 54
M Y+C+LL+K ++ E + ++ + V R G + + G +L Y +KK
Sbjct: 1 MAFYECVLLIKSNLSDEEIASVLGKFQNLVVSREGTVHHVQKMGKRRLSYELKK 54
>gi|295093123|emb|CBK82214.1| SSU ribosomal protein S6P [Coprococcus sp. ART55/1]
Length = 96
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ L++ + +E+ +V +V ++ N +T++ G +L Y I+K+ YY
Sbjct: 1 MNKYELTLVVSAKIDEEARTAVVDKVKSYIEKANATITEVNECGLKKLAYEIQKMGEAYY 60
Query: 61 QLI 63
I
Sbjct: 61 YFI 63
>gi|251772230|gb|EES52800.1| ribosomal protein S6 [Leptospirillum ferrodiazotrophum]
Length = 129
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKK 54
M Y+C+LLLKP + E ++R K V + G L G +L Y ++K
Sbjct: 1 MYFYECVLLLKPTLSDEEAQATISRYEKIVEDKGGRLHATQRLGKKRLAYELRK 54
>gi|253681311|ref|ZP_04862109.1| ribosomal protein S6 [Clostridium botulinum D str. 1873]
gi|416348328|ref|ZP_11680280.1| 30S ribosomal protein S6 [Clostridium botulinum C str. Stockholm]
gi|253562549|gb|EES92000.1| ribosomal protein S6 [Clostridium botulinum D str. 1873]
gi|338196894|gb|EGO89071.1| 30S ribosomal protein S6 [Clostridium botulinum C str. Stockholm]
Length = 95
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQLI 63
Y+ + +L+P + +E + + + + GV+ ++ +G +L Y I K+ YY LI
Sbjct: 4 YETLFILQPSLEEEVIKATIEKFKGVIENEGGVVENVDEWGKRKLAYPINKVSEGYYTLI 63
>gi|443325009|ref|ZP_21053725.1| ribosomal protein S6 [Xenococcus sp. PCC 7305]
gi|442795383|gb|ELS04754.1| ribosomal protein S6 [Xenococcus sp. PCC 7305]
Length = 113
Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKK-LDGRYYQL 62
Y+ M +L+P + +E + E V + + R I + G +L Y IKK LDG Y Q+
Sbjct: 5 YEMMYILRPDLSEEKVREAVGKYQSFIADRGAEDIQIQNRGKRRLAYPIKKFLDGIYIQM 64
>gi|403068946|ref|ZP_10910278.1| 30S ribosomal protein S6 [Oceanobacillus sp. Ndiop]
Length = 95
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M +++P + +++L L+ R K + + + G +L Y IK YY
Sbjct: 1 MRKYEIMYIVRPDIEEDALTALIERFNKILTDNGAEIAKVDEKGKKRLAYEIKDYRDGYY 60
Query: 61 QLIPTWEFNSGS 72
+I F+SG
Sbjct: 61 VIIN---FSSGD 69
>gi|345018950|ref|YP_004821303.1| 30S ribosomal protein S6 [Thermoanaerobacter wiegelii Rt8.B1]
gi|344034293|gb|AEM80019.1| 30S ribosomal protein S6 [Thermoanaerobacter wiegelii Rt8.B1]
Length = 95
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGI-KKLDGRY 59
M Y+ M +L P + +E L+ R + G +T+ +G +L Y I KKL+G Y
Sbjct: 1 MRSYETMYILSPDLSEEERKGLIERFKNLIIENGGEITNFDEWGKRKLAYPIDKKLEG-Y 59
Query: 60 YQLIPTWEFNSGS 72
Y L+ FNS S
Sbjct: 60 YVLM---NFNSNS 69
>gi|384491323|gb|EIE82519.1| 30S ribosomal protein S6 [Rhizopus delemar RA 99-880]
Length = 111
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKK-----L 55
MP Y+ + + + ++ + +L +L+ K V R GV+ ++G +++ + IK+
Sbjct: 1 MPFYELVCIARHNIVESNLKDLLKTSAKQVLNRGGVVRGFDNWGDMKIPHRIKRHQEYFT 60
Query: 56 DGRYYQL 62
DGRY+ +
Sbjct: 61 DGRYWTM 67
>gi|255284242|ref|ZP_05348797.1| ribosomal protein S6 [Bryantella formatexigens DSM 14469]
gi|255265195|gb|EET58400.1| ribosomal protein S6 [Marvinbryantia formatexigens DSM 14469]
Length = 95
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ +++ + ++ V +V +++ NG +T++ +G +L Y I+K+ YY
Sbjct: 1 MNKYELAVVVNAKIEDDARTATVEKVKEYITRYNGTITNVDEWGKKKLAYEIQKMSEGYY 60
Query: 61 QLI 63
I
Sbjct: 61 YFI 63
>gi|138897056|ref|YP_001127509.1| 30S ribosomal protein S6 [Geobacillus thermodenitrificans NG80-2]
gi|134268569|gb|ABO68764.1| Ribosomal protein S6 (BS9) [Geobacillus thermodenitrificans
NG80-2]
Length = 98
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQLI 63
Y+ M +++P++ E+ +V R + + +T++T +G +L Y I+K YY ++
Sbjct: 7 YEIMYIIRPNMDDEARQAVVERFNNVLKEKGAEITNVTDWGKRRLAYEIEKYRDGYYMIL 66
>gi|239828696|ref|YP_002951320.1| 30S ribosomal protein S6 [Geobacillus sp. WCH70]
gi|259495336|sp|C5D9X6.1|RS6_GEOSW RecName: Full=30S ribosomal protein S6
gi|239808989|gb|ACS26054.1| ribosomal protein S6 [Geobacillus sp. WCH70]
Length = 95
Score = 34.3 bits (77), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKK-LDGRY 59
M Y+ M +++P++ E+ +V R + +T++T +G +L Y IKK DG Y
Sbjct: 1 MRKYEIMYIIRPNLDDEARQAVVDRFNNILKENGAEITNVTDWGKRRLAYEIKKYRDGHY 60
>gi|433447840|ref|ZP_20411216.1| 30S ribosomal protein S6 [Anoxybacillus flavithermus TNO-09.006]
gi|431999681|gb|ELK20597.1| 30S ribosomal protein S6 [Anoxybacillus flavithermus TNO-09.006]
Length = 95
Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGV-LTDITSFGTVQLGYGIKKLDGRY 59
M Y+ M +++P++ +E+ +V R +V NG +T++ +G +L Y I+K Y
Sbjct: 1 MRKYEIMYIIRPNMEEEARKAVVERFN-NVLTENGAEITNVKEWGKRRLAYEIQKFRDGY 59
Query: 60 YQLI 63
Y ++
Sbjct: 60 YMIL 63
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.325 0.144 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,267,031,337
Number of Sequences: 23463169
Number of extensions: 43509676
Number of successful extensions: 115211
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 115144
Number of HSP's gapped (non-prelim): 88
length of query: 79
length of database: 8,064,228,071
effective HSP length: 50
effective length of query: 29
effective length of database: 6,891,069,621
effective search space: 199841019009
effective search space used: 199841019009
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 69 (31.2 bits)