BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034908
(79 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B1I6T1|RS6_DESAP 30S ribosomal protein S6 OS=Desulforudis audaxviator (strain
MP104C) GN=rpsF PE=3 SV=1
Length = 94
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIK 53
M Y+ M +LKP + E +L+ + K + R+G +T++ +G +L Y IK
Sbjct: 1 MRQYEVMYILKPDLEDEESTQLIEKFSKIITDRDGEITELNRWGKRRLAYEIK 53
>sp|C0ZA47|RS6_BREBN 30S ribosomal protein S6 OS=Brevibacillus brevis (strain 47 / JCM
6285 / NBRC 100599) GN=rpsF PE=3 SV=1
Length = 95
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M +L+P + +E + VAR V G ++ + G +L Y I K YY
Sbjct: 1 MRQYEVMYVLRPDLEEEKVKSNVARYSDVVTNYGGEISKLQEMGKRRLAYEINKFREGYY 60
Query: 61 QLIPTWEFNSGSIFEG 76
L+ ++ NS ++ E
Sbjct: 61 VLM-NFKANSDAVAEA 75
>sp|B9M5U8|RS6_GEOSF 30S ribosomal protein S6 OS=Geobacter sp. (strain FRC-32) GN=rpsF
PE=3 SV=1
Length = 128
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLD-GRY 59
M +Y+ + +++P + +E L + ARV + + G L + +G +L Y I+K + GRY
Sbjct: 1 MRMYETIFIVQPDLGEEELKGISARVQEVIVSMKGELKRLEDWGARKLAYPIEKFNRGRY 60
Query: 60 YQL 62
Y L
Sbjct: 61 YYL 63
>sp|Q5KU69|RS6_GEOKA 30S ribosomal protein S6 OS=Geobacillus kaustophilus (strain
HTA426) GN=rpsF PE=3 SV=1
Length = 95
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGV-LTDITSFGTVQLGYGIKKLDGRY 59
M Y+ M +++P++ E+ LV R +V NG +T++T +G +L Y I+K Y
Sbjct: 1 MRKYEIMYIIRPNMDDEARQALVERFN-NVLKENGAEITNVTDWGKRRLAYEIQKYRDGY 59
Query: 60 YQLI 63
Y ++
Sbjct: 60 YMIV 63
>sp|Q8R6M1|RS6_THETN 30S ribosomal protein S6 OS=Thermoanaerobacter tengcongensis
(strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
GN=rpsF PE=3 SV=1
Length = 95
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M +L P + +E L+ R + R G +T+ +G +L Y I+K YY
Sbjct: 1 MRSYETMYVLSPDLNEEERKGLIERFKNLIVERGGEITNFDEWGKRKLAYPIQKKSEGYY 60
Query: 61 QLIPTWEFNSG 71
L+ FNS
Sbjct: 61 VLM---NFNSS 68
>sp|Q9WZ72|RS6_THEMA 30S ribosomal protein S6 OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=rpsF PE=1 SV=1
Length = 128
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGR-NGVLTDITSFGTVQLGYGIKKLDGRYYQ 61
+Y+ M ++ P+V +E LV RV K + R G + + G + Y IKK + Y
Sbjct: 8 IYESMFIIAPNVPEEERENLVERVKKIIEERVKGKIDKVERMGMRKFAYEIKKFNEGDYT 67
Query: 62 LI 63
+I
Sbjct: 68 VI 69
>sp|C5D9X6|RS6_GEOSW 30S ribosomal protein S6 OS=Geobacillus sp. (strain WCH70)
GN=rpsF PE=3 SV=1
Length = 95
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKK-LDGRY 59
M Y+ M +++P++ E+ +V R + +T++T +G +L Y IKK DG Y
Sbjct: 1 MRKYEIMYIIRPNLDDEARQAVVDRFNNILKENGAEITNVTDWGKRRLAYEIKKYRDGHY 60
>sp|A5IJH1|RS6_THEP1 30S ribosomal protein S6 OS=Thermotoga petrophila (strain RKU-1 /
ATCC BAA-488 / DSM 13995) GN=rpsF PE=3 SV=1
Length = 128
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGR-NGVLTDITSFGTVQLGYGIKKLDGRYYQ 61
+Y+ M ++ P+V +E LV RV K + R G + + G + Y IKK Y
Sbjct: 8 IYESMFIIAPNVPEEERENLVERVKKIIEERVKGKIEKVERMGMRKFAYEIKKFSEGDYT 67
Query: 62 LI 63
+I
Sbjct: 68 VI 69
>sp|A0PX87|RS6_CLONN 30S ribosomal protein S6 OS=Clostridium novyi (strain NT) GN=rpsF
PE=3 SV=1
Length = 95
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ + +L P + +E+ + + + GV+ ++ +G +L Y I K++ YY
Sbjct: 1 MRNYETLFILNPSLDEEATKAAIEKFKGVIEKEGGVVENVDEWGRRKLAYPINKVNEGYY 60
Query: 61 QLI 63
LI
Sbjct: 61 TLI 63
>sp|C6E503|RS6_GEOSM 30S ribosomal protein S6 OS=Geobacter sp. (strain M21) GN=rpsF
PE=3 SV=1
Length = 134
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGI-KKLDGRYYQ 61
+Y+ + +++P + E + L +V V G NG + +GT +L Y I K GRY+
Sbjct: 4 MYETIYIVQPDLGDEEIKALSTKVQDVVAGMNGDFKRLEDWGTRKLAYPINKNPRGRYFY 63
Query: 62 LIPTWEFNSGSIFE 75
L ++ +SG I E
Sbjct: 64 L--RFDGDSGLIAE 75
>sp|Q0SPR6|RS6_CLOPS 30S ribosomal protein S6 OS=Clostridium perfringens (strain SM101
/ Type A) GN=rpsF PE=3 SV=1
Length = 95
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ + + P + +E++ L+ + + NG + ++ +G +L Y I K++ YY
Sbjct: 1 MRKYETIFVAHPSLDEEAVKALIEKFKGVIENGNGTVDNVDFWGKRKLAYEIAKVNEGYY 60
Query: 61 QLI 63
LI
Sbjct: 61 TLI 63
>sp|Q8XH43|RS6_CLOPE 30S ribosomal protein S6 OS=Clostridium perfringens (strain 13 /
Type A) GN=rpsF PE=3 SV=2
Length = 95
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ + + P + +E++ L+ + + NG + ++ +G +L Y I K++ YY
Sbjct: 1 MRKYETIFVAHPSLDEEAVKALIEKFKGVIENGNGTVDNVDFWGKRKLAYEIAKVNEGYY 60
Query: 61 QLI 63
LI
Sbjct: 61 TLI 63
>sp|Q0TM08|RS6_CLOP1 30S ribosomal protein S6 OS=Clostridium perfringens (strain ATCC
13124 / NCTC 8237 / Type A) GN=rpsF PE=3 SV=1
Length = 95
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ + + P + +E++ L+ + + NG + ++ +G +L Y I K++ YY
Sbjct: 1 MRKYETIFVAHPSLDEEAVKALIEKFKGVIENGNGTVDNVDFWGKRKLAYEIAKVNEGYY 60
Query: 61 QLI 63
LI
Sbjct: 61 TLI 63
>sp|A5FYN8|RS6_ACICJ 30S ribosomal protein S6 OS=Acidiphilium cryptum (strain JF-5)
GN=rpsF PE=3 SV=1
Length = 158
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKK 54
MPLY+C+L+ + + ++ + + V V +G + +G L Y IKK
Sbjct: 1 MPLYECVLIARSEITQQQVDTIADAVTAQVESESGAVKKREYWGLRNLAYRIKK 54
>sp|O19917|RR6_CYACA 30S ribosomal protein S6, chloroplastic OS=Cyanidium caldarium
GN=rps6 PE=3 SV=1
Length = 103
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKL-DGRYYQ 61
Y+ ML+++P + +E ++ ++ + +H + ++++ G +L Y ++K DG Y Q
Sbjct: 14 YEIMLIMRPDLPEEKFLKFLSEIKEHAKRNLALEFNLSNRGRRKLAYAMRKFQDGIYIQ 72
>sp|Q65CP3|RS6_BACLD 30S ribosomal protein S6 OS=Bacillus licheniformis (strain DSM 13
/ ATCC 14580) GN=rpsF PE=3 SV=1
Length = 95
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M +++P V +ES +V R + +T+ +G +L Y I +Y
Sbjct: 1 MRKYEIMYIIRPDVDEESKKAVVERFNNILTTNGAEITETKDWGKRRLAYEINDFRDGFY 60
Query: 61 QLI 63
Q++
Sbjct: 61 QIL 63
>sp|Q74FE4|RS6_GEOSL 30S ribosomal protein S6 OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=rpsF PE=3 SV=1
Length = 117
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKK-LDGRYY 60
+Y+ +++++P + + L L A+V + GVL + +G +L Y +KK + GRYY
Sbjct: 4 MYETIVIVQPELGDDELKGLTAKVTDIIGSFKGVLHRLEDWGVRKLAYPVKKSVRGRYY 62
>sp|B0S2G9|RS6_FINM2 30S ribosomal protein S6 OS=Finegoldia magna (strain ATCC 29328)
GN=rpsF PE=3 SV=1
Length = 95
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ +L+ KP + +E + +R+ + V NG L ++ +G +L Y I + YY
Sbjct: 1 MNKYELVLIFKPELSEEDRNTVFSRI-QQVIDENGKLEEVHDWGKRKLAYEINYIKEGYY 59
Query: 61 QLI 63
++
Sbjct: 60 YIV 62
>sp|B0K5L9|RS6_THEPX 30S ribosomal protein S6 OS=Thermoanaerobacter sp. (strain X514)
GN=rpsF PE=3 SV=1
Length = 95
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M +L P + +E L+ R + G +T+ +G +L Y I K YY
Sbjct: 1 MRSYETMYILSPDLSEEERKGLIERFKNLIIENGGEITNFDEWGKRKLAYLIDKKPEGYY 60
Query: 61 QLIPTWEFNSGS 72
L+ FNS S
Sbjct: 61 VLM---NFNSDS 69
>sp|B0K8G4|RS6_THEP3 30S ribosomal protein S6 OS=Thermoanaerobacter pseudethanolicus
(strain ATCC 33223 / 39E) GN=rpsF PE=3 SV=1
Length = 95
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M +L P + +E L+ R + G +T+ +G +L Y I K YY
Sbjct: 1 MRSYETMYILSPDLSEEERKGLIERFKNLIIENGGEITNFDEWGKRKLAYLIDKKPEGYY 60
Query: 61 QLIPTWEFNSGS 72
L+ FNS S
Sbjct: 61 VLM---NFNSDS 69
>sp|B3E6H3|RS6_GEOLS 30S ribosomal protein S6 OS=Geobacter lovleyi (strain ATCC
BAA-1151 / DSM 17278 / SZ) GN=rpsF PE=3 SV=1
Length = 122
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKL-DGRY 59
M Y+ + +L+P + ++ + + +V V G + +GT +L Y I+K GRY
Sbjct: 1 MRKYETIFILQPDLAEDDVKSVTDKVQDVVASLKGDFHRLDDWGTRKLAYAIRKFPRGRY 60
Query: 60 YQL 62
Y L
Sbjct: 61 YYL 63
>sp|A5N440|RS6_CLOK5 30S ribosomal protein S6 OS=Clostridium kluyveri (strain ATCC
8527 / DSM 555 / NCIMB 10680) GN=rpsF PE=3 SV=1
Length = 95
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ + +L P + +E V + + GV+ ++ +G +L Y IKK++ YY
Sbjct: 1 MGKYETIFILHPSLDEEGYKANVEKFKGVIENGGGVIENVDIWGKRKLAYEIKKVNEGYY 60
Query: 61 QLI 63
LI
Sbjct: 61 TLI 63
>sp|B9DXR0|RS6_CLOK1 30S ribosomal protein S6 OS=Clostridium kluyveri (strain NBRC
12016) GN=rpsF PE=3 SV=1
Length = 95
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ + +L P + +E V + + GV+ ++ +G +L Y IKK++ YY
Sbjct: 1 MGKYETIFILHPSLDEEGYKANVEKFKGVIENGGGVIENVDIWGKRKLAYEIKKVNEGYY 60
Query: 61 QLI 63
LI
Sbjct: 61 TLI 63
>sp|P21468|RS6_BACSU 30S ribosomal protein S6 OS=Bacillus subtilis (strain 168)
GN=rpsF PE=1 SV=2
Length = 95
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 30/63 (47%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M +++P++ +ES ++ R + +T +G +L Y I +Y
Sbjct: 1 MRKYEVMYIIRPNIDEESKKAVIERFNNVLTSNGAEITGTKDWGKRRLAYEINDFRDGFY 60
Query: 61 QLI 63
Q++
Sbjct: 61 QIV 63
>sp|B5EHW9|RS6_GEOBB 30S ribosomal protein S6 OS=Geobacter bemidjiensis (strain Bem /
ATCC BAA-1014 / DSM 16622) GN=rpsF PE=3 SV=1
Length = 134
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGI-KKLDGRYYQ 61
+Y+ + +++P + E + L +V + NG + +GT +L Y I K GRY+
Sbjct: 4 MYETIYIVQPDLGDEEIKALSTKVQDVIASMNGDFKRVEDWGTRKLAYPINKNPRGRYFY 63
Query: 62 LIPTWEFNSGSIFE 75
L ++ +SG I E
Sbjct: 64 L--RFDGDSGLIAE 75
>sp|A7ZAU9|RS6_BACA2 30S ribosomal protein S6 OS=Bacillus amyloliquefaciens (strain
FZB42) GN=rpsF PE=3 SV=1
Length = 95
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 30/63 (47%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M +++P++ +ES ++ R + +T +G +L Y I +Y
Sbjct: 1 MKKYEVMYIIRPNIDEESKKAVIERFNNVLTSNGAEITGTKDWGKRRLAYEINDFRDGFY 60
Query: 61 QLI 63
Q++
Sbjct: 61 QIL 63
>sp|A4J9Q5|RS6_DESRM 30S ribosomal protein S6 OS=Desulfotomaculum reducens (strain
MI-1) GN=rpsF PE=3 SV=1
Length = 95
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M ++KP V +E + L+ + V + +T + +G +L Y I K+ Y
Sbjct: 1 MRNYEVMYIIKPEVEEEKVTALMEKFKSVVEEKGAEVTKLDKWGKRRLAYEINKIKEGIY 60
Query: 61 QLI 63
L+
Sbjct: 61 VLM 63
>sp|A8MED4|RS6_ALKOO 30S ribosomal protein S6 OS=Alkaliphilus oremlandii (strain
OhILAs) GN=rpsF PE=3 SV=1
Length = 94
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ + +LK +V +E +L+ + + + +G + ++ +G +L Y I K++ YY
Sbjct: 1 MNKYELVYILKSNVEEEKRNQLLDKF-RGIIEADGTIENVDEWGNRRLAYEINKINEGYY 59
Query: 61 QLI 63
L+
Sbjct: 60 TLV 62
>sp|Q3ANR5|RS6_CHLCH 30S ribosomal protein S6 OS=Chlorobium chlorochromatii (strain
CaD3) GN=rpsF PE=3 SV=1
Length = 132
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQL 62
LY+C ++ ++ E++ +A V + + + G + + G + Y IKK YY
Sbjct: 6 LYECTAIIDGGLQDEAVAATLAMVQRVITEKGGTINSVLDLGRRKTAYPIKKKSMGYYVH 65
Query: 63 IPTWEFNSGS 72
I EFN+ +
Sbjct: 66 I---EFNAAA 72
>sp|Q2KZ18|RS6_BORA1 30S ribosomal protein S6 OS=Bordetella avium (strain 197N)
GN=rpsF PE=3 SV=1
Length = 124
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ + ++ P + E + +V R V G+NG + + +G QL Y I+KL +Y
Sbjct: 1 MRHYEVVFIVHPD-QSEQVPAMVERYQSLVTGQNGAVHRLEDWGRRQLAYPIQKLVKAHY 59
Query: 61 QLIPTWEFNSGSIFE 75
+ E N ++ E
Sbjct: 60 -VCMNIECNQATLDE 73
>sp|A7GXQ4|RS6_CAMC5 30S ribosomal protein S6 OS=Campylobacter curvus (strain 525.92)
GN=rpsF PE=3 SV=1
Length = 142
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDG--- 57
M Y+ + +LKP + +E + V V + + G + + GT +L Y IKK +
Sbjct: 1 MKHYELLFILKPTLTEEEVKAKVDFVKEVITKNGGEIATVVEMGTRKLAYTIKKYERGTY 60
Query: 58 --RYYQLIPT 65
YY+ PT
Sbjct: 61 FVIYYKAPPT 70
>sp|Q3AG27|RS6_CARHZ 30S ribosomal protein S6 OS=Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008) GN=rpsF PE=3 SV=1
Length = 96
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
Y+ M +L P + E ++ R + G +T I +G + Y IKKL YY
Sbjct: 5 YEVMYILHPELDAEKTESIIERFKGMIEQEGGEVTKIDRWGKRRFAYEIKKLREGYY 61
>sp|B1L8K7|RS6_THESQ 30S ribosomal protein S6 OS=Thermotoga sp. (strain RQ2) GN=rpsF
PE=3 SV=1
Length = 128
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGR-NGVLTDITSFGTVQLGYGIKKLDGRYYQ 61
+Y+ M ++ P+V +E +LV RV + R G + + G + Y IKK Y
Sbjct: 8 IYESMFIIAPNVPEEEREKLVERVKGIIEERVKGKIDKVERMGMRKFAYEIKKFSEGDYT 67
Query: 62 LI 63
+I
Sbjct: 68 VI 69
>sp|B9KB39|RS6_THENN 30S ribosomal protein S6 OS=Thermotoga neapolitana (strain ATCC
49049 / DSM 4359 / NS-E) GN=rpsF PE=3 SV=1
Length = 127
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGR-NGVLTDITSFGTVQLGYGIKKLDGRYYQ 61
+Y+ M ++ P+V +E +LV RV + R G + + G + Y IKK Y
Sbjct: 8 IYESMFIIAPNVPEEEREKLVERVKGIIEERVKGKIDKVERMGMRKFAYEIKKFSEGDYT 67
Query: 62 LI 63
+I
Sbjct: 68 VI 69
>sp|A8ZRQ3|RS6_DESOH 30S ribosomal protein S6 OS=Desulfococcus oleovorans (strain DSM
6200 / Hxd3) GN=rpsF PE=3 SV=1
Length = 168
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGI-KKLDGRY 59
M Y+ + + P + E+ +L + + +GVL + +GT +L Y I KK G Y
Sbjct: 1 MRRYETIFIADPDLSPENQAQLFEKATTLIDANSGVLVEFDEWGTRRLAYEIRKKPRGHY 60
Query: 60 YQL 62
+L
Sbjct: 61 VRL 63
>sp|Q9UT82|RT06_SCHPO 37S ribosomal protein MRP17, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mrp17 PE=3 SV=2
Length = 111
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 20 MELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRY 59
M + G+ + GV+ D+ S G +L IKKL+ Y
Sbjct: 26 MNIAKNCGRAILDNKGVVVDVESMGLKELAKPIKKLNQSY 65
>sp|A7ZEF6|RS6_CAMC1 30S ribosomal protein S6 OS=Campylobacter concisus (strain 13826)
GN=rpsF PE=3 SV=1
Length = 139
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLD-GRY 59
M Y+ + +LKP + +E + V V + + G + + GT +L Y IKK + G Y
Sbjct: 1 MKHYELLFILKPTLTEEEVKAKVDFVKEVITKNGGEIATVIEMGTRKLAYTIKKYERGTY 60
Query: 60 Y 60
+
Sbjct: 61 F 61
>sp|B4SB42|RS6_PELPB 30S ribosomal protein S6 OS=Pelodictyon phaeoclathratiforme
(strain DSM 5477 / BU-1) GN=rpsF PE=3 SV=1
Length = 134
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQL 62
LY+C L++ ++ E++ +A V + + + G ++ + G + Y IKK YY
Sbjct: 6 LYECTLIIDGGLQDEAIAAAMALVQRVITEKGGSISSVLEIGRRKTAYPIKKKTIGYYAH 65
Query: 63 IPTWEFNSGS 72
I EF + +
Sbjct: 66 I---EFTAAT 72
>sp|B1WU11|RS6_CYAA5 30S ribosomal protein S6 OS=Cyanothece sp. (strain ATCC 51142)
GN=rpsF PE=3 SV=1
Length = 119
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGI-KKLDGRYYQL 62
Y+ + +L+P + +E + + VA+ + + N +G +L Y I KK+DG Y Q
Sbjct: 5 YEMIFILRPDLSEEQVNQAVAKYQEFLTENNATDLQTKIWGKRRLAYPIQKKVDGIYVQF 64
>sp|A7GVN7|RS6_BACCN 30S ribosomal protein S6 OS=Bacillus cereus subsp. cytotoxis
(strain NVH 391-98) GN=rpsF PE=3 SV=1
Length = 95
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 30/63 (47%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M +++P++ +E+ LV R + + + +G +L Y I L +Y
Sbjct: 1 MKKYEIMYIIRPNMEEEAQKALVERFANVLTNNGAEIINTKEWGKRRLAYEINDLRDGFY 60
Query: 61 QLI 63
++
Sbjct: 61 MIL 63
>sp|B2GEV4|RS6_LACF3 30S ribosomal protein S6 OS=Lactobacillus fermentum (strain NBRC
3956 / LMG 18251) GN=rpsF PE=3 SV=1
Length = 97
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 31/72 (43%)
Query: 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQLI 63
Y+ +++P + + + ELVAR K + + D + T + Y I K Y ++
Sbjct: 6 YEITYIIRPDIEESAKSELVARFDKILADNGATVVDSADWDTRRFAYQIGKYTEGTYHIV 65
Query: 64 PTWEFNSGSIFE 75
+ S+ E
Sbjct: 66 NVTADSDASLNE 77
>sp|Q181R5|RS6_CLOD6 30S ribosomal protein S6 OS=Clostridium difficile (strain 630)
GN=rpsF PE=3 SV=1
Length = 92
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ + ++KP+ E + E + K V +G + + ++GT +L Y I K +Y
Sbjct: 1 MRNYELVYVVKPN-SDEEVREAILNKVKEVVATDGEIVKVDTWGTKKLAYPIAKFTEGFY 59
Query: 61 QLI 63
L+
Sbjct: 60 VLV 62
>sp|B5YEW9|RS6_DICT6 30S ribosomal protein S6 OS=Dictyoglomus thermophilum (strain
ATCC 35947 / DSM 3960 / H-6-12) GN=rpsF PE=3 SV=1
Length = 97
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M L+ P + +E L + + + G + ++ +G L Y +KK YY
Sbjct: 1 MRKYEIMCLMSPELSEEEFKTLYESIHQDIQSLGGEVQNVDVWGKRTLAYPVKKFTEGYY 60
>sp|Q8RIE3|RS6_FUSNN 30S ribosomal protein S6 OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=rpsF PE=3 SV=2
Length = 94
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M ++ P V +E ELV +V + + +G +L Y I K +Y
Sbjct: 1 MRKYEIMYIINPTVLEEGREELVNQVNALLTSNGATIAKTEKWGERKLAYPIDKKKSGFY 60
Query: 61 QLIPTWEFNSGSIFE 75
++ T+E + + E
Sbjct: 61 -VLTTFEIDGTKLAE 74
>sp|Q17Z31|RS6_HELAH 30S ribosomal protein S6 OS=Helicobacter acinonychis (strain
Sheeba) GN=rpsF PE=3 SV=1
Length = 142
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ M +LKP + +E + + + + NGV+ G L Y IKK YY
Sbjct: 1 MRHYETMFILKPTLVEEEIKSKIEFYKEVITKHNGVIETSLDMGMRNLAYEIKKHKRGYY 60
>sp|A5CY52|RS6_PELTS 30S ribosomal protein S6 OS=Pelotomaculum thermopropionicum
(strain DSM 13744 / JCM 10971 / SI) GN=rpsF PE=3 SV=1
Length = 95
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 30/63 (47%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ + +L+P + +E E++ + + G + I +G +L Y +K +Y
Sbjct: 1 MRKYEVIFILRPDLEEEKNAEVIEKFKNLIESHGGEIIKIDKWGKRRLAYEVKDFREGFY 60
Query: 61 QLI 63
+I
Sbjct: 61 IVI 63
>sp|Q8KAM1|RS6_CHLTE 30S ribosomal protein S6 OS=Chlorobium tepidum (strain ATCC 49652
/ DSM 12025 / TLS) GN=rpsF PE=3 SV=1
Length = 131
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQLI 63
Y+C +++ ++ +++ ++ V K V + GV+ ++ G ++ Y I+K YY I
Sbjct: 7 YECTVIIDGGLQDDAIAAVMELVKKTVTDKGGVINNVLEVGRRKMAYLIRKTSIGYYAHI 66
Query: 64 PTWEFNS 70
EF++
Sbjct: 67 ---EFDA 70
>sp|B9KCI6|RS6_CAMLR 30S ribosomal protein S6 OS=Campylobacter lari (strain RM2100 /
D67 / ATCC BAA-1060) GN=rpsF PE=3 SV=1
Length = 124
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGV-LTDITSFGTVQLGYGIKKLD-GR 58
M Y+ + +LKP + +E + + V K V +NG + + GT +L Y IKK + G
Sbjct: 1 MRHYEVLFILKPTLTEEEVSAKLEFV-KEVLTKNGAEIESVVPMGTRKLAYKIKKYERGT 59
Query: 59 YY 60
Y+
Sbjct: 60 YF 61
>sp|Q1LSR2|RS6_BAUCH 30S ribosomal protein S6 OS=Baumannia cicadellinicola subsp.
Homalodisca coagulata GN=rpsF PE=3 SV=1
Length = 125
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ +L++ P + E + ++ R + G + + +G QL Y IKKL +Y
Sbjct: 1 MRHYEIVLMVHPD-QSEQVSRMIERYSTVITSAQGKIHRLEDWGRRQLSYPIKKLHKAHY 59
Query: 61 QLI 63
LI
Sbjct: 60 VLI 62
>sp|A1K3D0|RS6_AZOSB 30S ribosomal protein S6 OS=Azoarcus sp. (strain BH72) GN=rpsF
PE=3 SV=1
Length = 127
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYY 60
M Y+ + ++ P + E + ++ R V RNG + + +G QL Y I+K+ +Y
Sbjct: 1 MRHYEIVFIVHPD-QSEQVPAMIDRYKSIVTARNGQIHRLEDWGRRQLAYPIQKVHKAHY 59
Query: 61 QLI 63
L+
Sbjct: 60 VLM 62
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.144 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,027,750
Number of Sequences: 539616
Number of extensions: 1030383
Number of successful extensions: 3317
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 3255
Number of HSP's gapped (non-prelim): 98
length of query: 79
length of database: 191,569,459
effective HSP length: 50
effective length of query: 29
effective length of database: 164,588,659
effective search space: 4773071111
effective search space used: 4773071111
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)