Query 034908
Match_columns 79
No_of_seqs 104 out of 1035
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 12:18:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034908.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034908hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cqm_A Ribosomal protein S6; a 100.0 9.8E-31 3.4E-35 164.6 5.7 74 1-75 1-74 (101)
2 2j5a_A 30S ribosomal protein S 100.0 4.3E-30 1.5E-34 163.9 7.6 74 1-75 7-81 (110)
3 3r8n_F 30S ribosomal protein S 100.0 4E-30 1.4E-34 161.7 2.5 73 1-75 1-73 (100)
4 3r3t_A 30S ribosomal protein S 100.0 7.9E-31 2.7E-35 164.6 -1.1 74 1-75 4-77 (99)
5 1vmb_A 30S ribosomal protein S 100.0 8.6E-29 2.9E-33 164.2 7.1 74 1-75 18-92 (140)
6 3i1m_F 30S ribosomal protein S 99.9 1.3E-28 4.5E-33 162.4 4.1 73 1-75 1-73 (135)
7 3bbn_F Ribosomal protein S6; s 99.9 1.2E-27 4.2E-32 162.7 6.8 74 1-75 62-144 (168)
8 2kjw_A TS9, 30S ribosomal prot 99.9 1.1E-23 3.8E-28 132.2 3.6 54 1-54 43-96 (96)
9 3zzp_A TS9, ribosomal protein 99.0 1.6E-10 5.6E-15 69.4 3.8 35 1-35 43-77 (77)
10 3lo3_A Uncharacterized conserv 73.9 7.2 0.00025 22.9 4.7 38 1-40 3-40 (94)
11 3mb2_A 4-oxalocrotonate tautom 69.9 6.3 0.00022 21.6 3.6 30 1-32 1-30 (72)
12 2x3d_A SSO6206; unknown functi 66.6 4.6 0.00016 24.8 2.6 39 9-54 54-94 (96)
13 2yy3_A Elongation factor 1-bet 64.6 9 0.00031 22.9 3.7 50 2-55 2-53 (91)
14 2raq_A Conserved protein MTH88 62.0 4.9 0.00017 24.6 2.2 33 8-47 54-88 (97)
15 2l42_A DNA-binding protein RAP 61.8 1.4 4.7E-05 27.5 -0.4 35 8-42 17-51 (106)
16 1mww_A Hypothetical protein HI 60.4 12 0.0004 22.6 3.8 43 11-53 67-127 (128)
17 2qn6_B Translation initiation 59.3 6.1 0.00021 23.6 2.3 37 2-38 52-89 (93)
18 3ip0_A 2-amino-4-hydroxy-6-hyd 58.9 11 0.00036 24.6 3.6 45 3-51 53-97 (158)
19 3bpd_A Uncharacterized protein 58.8 8.8 0.0003 23.6 2.9 28 24-51 63-92 (100)
20 2i0f_A 6,7-dimethyl-8-ribityll 57.5 11 0.00036 24.7 3.3 55 1-55 5-63 (157)
21 3abf_A 4-oxalocrotonate tautom 57.0 16 0.00054 18.9 3.6 31 1-33 1-31 (64)
22 3fmb_A Dimeric protein of unkn 54.7 7.2 0.00025 23.8 2.1 58 7-71 26-85 (118)
23 2hzc_A Splicing factor U2AF 65 54.4 16 0.00054 19.7 3.4 32 11-42 15-49 (87)
24 2x4k_A 4-oxalocrotonate tautom 53.1 21 0.00072 18.0 4.0 31 1-33 3-33 (63)
25 3p04_A Uncharacterized BCR; SE 52.9 25 0.00085 20.8 4.2 30 12-41 36-65 (87)
26 3ej9_A Alpha-subunit of trans- 52.9 21 0.00072 19.8 3.8 30 1-32 1-30 (76)
27 1vq8_S 50S ribosomal protein L 51.1 21 0.00071 21.0 3.6 32 6-43 25-56 (85)
28 3j21_T 50S ribosomal protein L 50.3 22 0.00074 21.0 3.6 23 6-28 26-48 (86)
29 1x4o_A Splicing factor 4; stru 49.4 8.5 0.00029 22.1 1.7 21 16-36 14-34 (78)
30 3tve_T 50S ribosomal protein L 48.9 23 0.00079 21.1 3.6 24 6-29 24-47 (92)
31 3r8s_T 50S ribosomal protein L 48.8 23 0.00079 21.1 3.6 24 6-29 30-53 (93)
32 3bb5_A Stress responsive alpha 47.8 44 0.0015 20.2 5.8 56 10-71 29-84 (121)
33 1nxi_A Conserved hypothetical 46.8 26 0.00088 21.9 3.8 40 3-45 81-120 (132)
34 3c6v_A Probable tautomerase/de 46.1 22 0.00076 22.8 3.5 34 1-36 22-55 (161)
35 1cbk_A Protein (7,8-dihydro-6- 46.1 25 0.00085 22.9 3.8 45 3-52 54-98 (160)
36 1l6x_B Minimized B-domain of p 45.6 22 0.00074 17.8 2.6 18 11-28 15-32 (34)
37 2qyc_A Ferredoxin-like protein 45.2 43 0.0015 19.3 6.6 61 3-71 4-66 (103)
38 3bma_A D-alanyl-lipoteichoic a 43.8 42 0.0014 25.0 5.1 42 5-46 291-342 (407)
39 1b7y_B Phers, protein (phenyla 43.6 15 0.00051 29.5 2.8 29 13-41 755-783 (785)
40 1v5i_B POIA1, IA-1=serine prot 42.9 33 0.0011 19.0 3.6 30 7-40 6-35 (76)
41 2zjr_Q 50S ribosomal protein L 42.6 29 0.00099 20.8 3.4 24 6-29 25-48 (95)
42 1gyx_A YDCE, B1461, hypothetic 42.6 12 0.00041 20.6 1.6 49 10-59 8-66 (76)
43 1u8s_A Glycine cleavage system 40.2 21 0.00072 22.8 2.7 35 3-43 6-40 (192)
44 2ffg_A YKUJ; structural genomi 39.2 13 0.00044 22.3 1.4 38 17-54 2-43 (87)
45 1q4r_A Protein AT3G17210; cent 39.2 58 0.002 19.1 5.8 56 10-71 19-74 (112)
46 3qbc_A 2-amino-4-hydroxy-6-hyd 38.1 30 0.001 22.5 3.2 45 3-52 57-101 (161)
47 3bgu_A Ferredoxin-like protein 38.1 64 0.0022 19.2 6.6 56 8-71 28-83 (116)
48 3bn7_A Ferredoxin-like protein 36.5 70 0.0024 19.2 6.7 60 8-71 27-86 (120)
49 1nz0_A Ribonuclease P protein 36.1 12 0.0004 22.8 0.9 32 3-34 82-117 (118)
50 2ns6_A Mobilization protein A; 36.1 49 0.0017 21.8 4.0 35 4-38 72-106 (185)
51 2o5a_A BH1328 protein; BHR21, 35.9 34 0.0012 21.4 3.1 35 5-40 35-69 (125)
52 3bde_A MLL5499 protein; stress 35.8 73 0.0025 19.2 5.9 55 8-71 27-81 (120)
53 2okq_A Hypothetical protein YB 35.0 33 0.0011 22.2 2.9 45 1-46 25-69 (141)
54 2e5z_A SFRS8 protein, splicing 34.5 11 0.00038 22.6 0.5 21 16-36 21-41 (90)
55 2qtw_A Proprotein convertase s 34.4 80 0.0027 19.3 5.1 36 7-42 51-88 (124)
56 2np2_A HBB; protein-DNA comple 34.3 30 0.001 20.6 2.5 41 11-51 26-68 (108)
57 2yfv_C SCM3, KLLA0F05115P; cel 34.3 28 0.00095 19.6 2.2 11 12-22 16-26 (63)
58 2dt6_A Splicing factor 3 subun 34.1 16 0.00054 20.1 1.1 19 18-36 2-20 (64)
59 3u5e_X 60S ribosomal protein L 33.8 48 0.0016 21.4 3.6 24 6-29 82-105 (142)
60 2id1_A Hypothetical protein; a 33.6 41 0.0014 21.2 3.2 32 4-36 34-65 (130)
61 3n0v_A Formyltetrahydrofolate 33.5 57 0.002 22.8 4.2 38 1-44 6-43 (286)
62 1rbl_M Ribulose 1,5 bisphospha 32.4 7.2 0.00025 24.2 -0.5 27 1-31 8-34 (109)
63 1zpv_A ACT domain protein; str 32.1 33 0.0011 18.8 2.4 25 19-43 15-39 (91)
64 4a17_R RPL23A, 60S ribosomal p 32.0 52 0.0018 21.4 3.5 24 6-29 90-113 (150)
65 1owf_B IHF-beta, integration H 32.0 24 0.00084 20.2 1.8 39 12-50 15-55 (94)
66 2z51_A NIFU-like protein 2, ch 31.9 56 0.0019 21.0 3.7 27 14-40 4-30 (154)
67 1ug0_A Splicing factor 4; SURP 31.9 17 0.00059 21.3 1.1 21 16-36 24-44 (88)
68 1vr6_A Phospho-2-dehydro-3-deo 31.5 53 0.0018 23.9 3.9 24 5-28 12-35 (350)
69 3mcm_A 2-amino-4-hydroxy-6-hyd 31.2 63 0.0022 24.3 4.3 47 2-52 78-124 (442)
70 2o97_B NS1, HU-1, DNA-binding 31.2 26 0.00088 20.0 1.8 40 12-51 14-55 (90)
71 1u9d_A Hypothetical protein VC 31.2 26 0.00088 21.9 1.9 32 1-35 67-98 (122)
72 1yz7_A Probable translation in 30.7 30 0.001 23.0 2.3 37 2-38 135-172 (188)
73 1mul_A NS2, HU-2, DNA binding 30.2 25 0.00087 20.0 1.7 39 12-50 14-54 (90)
74 1f9y_A HPPK, protein (6-hydrox 30.1 58 0.002 21.0 3.6 45 3-51 53-97 (158)
75 2zkr_s 60S ribosomal protein L 30.1 58 0.002 21.3 3.5 24 6-29 96-119 (156)
76 2cg8_A Dihydroneopterin aldola 30.0 64 0.0022 22.4 4.0 42 3-49 171-212 (270)
77 3cmq_A Phenylalanyl-tRNA synth 29.7 30 0.001 25.6 2.3 26 13-38 388-414 (415)
78 3j21_P 50S ribosomal protein L 29.5 18 0.00062 22.4 1.0 23 24-46 87-109 (120)
79 1tr0_A Stable protein 1; plant 29.2 86 0.0029 18.1 5.8 58 10-71 17-74 (108)
80 1zda_A Mini protein A domain, 28.8 27 0.00092 17.8 1.4 17 11-27 20-36 (38)
81 1x0p_A Hypothetical protein TL 28.6 86 0.0029 19.6 4.1 30 1-30 1-32 (143)
82 3iz5_X 60S ribosomal protein L 28.5 56 0.0019 21.3 3.2 24 6-29 92-115 (152)
83 3ddc_B RAS association domain- 28.4 1.1E+02 0.0039 20.1 4.8 42 12-69 5-46 (163)
84 1b8z_A Protein (histonelike pr 28.1 23 0.00079 20.1 1.2 40 12-51 14-55 (90)
85 1zym_A Enzyme I; phosphotransf 27.7 17 0.00057 25.2 0.6 31 7-37 156-187 (258)
86 2khz_A C-MYC-responsive protei 26.7 41 0.0014 21.3 2.4 32 6-38 13-44 (165)
87 2ko1_A CTR148A, GTP pyrophosph 26.6 28 0.00095 18.8 1.3 37 1-42 1-38 (88)
88 3jwg_A HEN1, methyltransferase 26.3 1.2E+02 0.0041 18.8 5.0 39 3-42 102-142 (219)
89 1ve3_A Hypothetical protein PH 26.2 1.1E+02 0.0036 18.9 4.3 35 3-38 103-139 (227)
90 3mr7_A Adenylate/guanylate cyc 26.2 80 0.0027 19.7 3.7 28 14-41 25-56 (189)
91 2g9p_A Antimicrobial peptide l 25.5 4.1 0.00014 18.9 -1.9 17 41-57 8-24 (26)
92 1nns_A L-asparaginase II; amid 25.4 1.1E+02 0.0038 21.6 4.7 43 5-50 52-94 (326)
93 2m0n_A Putative uncharacterize 25.3 40 0.0014 21.0 2.0 20 7-26 34-53 (112)
94 2c21_A Trypanothione-dependent 25.0 36 0.0012 19.8 1.7 33 25-61 90-122 (144)
95 1th5_A NIFU1; iron-sulfur clus 24.9 27 0.00094 19.9 1.1 28 14-41 4-34 (74)
96 3mf2_A BLL0957 protein; aminoa 24.8 28 0.00094 25.5 1.3 32 4-35 195-226 (346)
97 2yh0_A Splicing factor U2AF 65 24.7 77 0.0026 19.2 3.3 32 11-42 13-47 (198)
98 3cw2_C Translation initiation 24.7 44 0.0015 23.1 2.3 37 2-38 225-262 (266)
99 1j26_A Immature colon carcinom 24.7 85 0.0029 19.2 3.4 31 12-42 54-84 (112)
100 2w01_A Adenylate cyclase; guan 24.6 56 0.0019 20.9 2.7 28 14-41 32-63 (208)
101 2ns1_B Nitrogen regulatory pro 24.4 1.2E+02 0.004 18.0 4.4 40 3-47 5-44 (116)
102 2g4b_A Splicing factor U2AF 65 24.2 83 0.0028 18.6 3.3 33 10-42 12-47 (172)
103 4epl_A Jasmonic acid-amido syn 24.2 1.7E+02 0.006 22.5 5.8 51 13-72 441-491 (581)
104 3cmq_A Phenylalanyl-tRNA synth 24.0 1.5E+02 0.0051 21.8 5.2 50 5-55 330-383 (415)
105 2ljp_A Ribonuclease P protein 23.8 37 0.0013 20.4 1.6 28 2-29 81-108 (119)
106 3ups_A Iojap-like protein; PSI 23.6 43 0.0015 21.2 2.0 36 4-40 50-85 (136)
107 2kxh_B Peptide of FAR upstream 23.6 50 0.0017 16.0 1.7 25 13-37 4-28 (31)
108 3i84_A Cervical EMMPRIN; CD147 23.6 85 0.0029 18.6 3.2 39 33-75 45-84 (98)
109 3i24_A HIT family hydrolase; s 23.5 69 0.0024 20.1 3.0 24 13-36 116-139 (149)
110 3ol3_A Putative uncharacterize 23.3 36 0.0012 21.0 1.5 21 8-28 38-58 (107)
111 2qx0_A 7,8-dihydro-6-hydroxyme 23.3 1.2E+02 0.0041 19.5 4.1 45 3-51 54-98 (159)
112 3r5g_A CYAB; adenylyl cyclase, 23.1 46 0.0016 20.9 2.0 29 13-41 26-58 (198)
113 4id3_A DNA repair protein REV1 23.0 37 0.0013 18.7 1.4 16 24-39 24-39 (92)
114 1wc3_A Adenylate cyclase; solu 22.9 62 0.0021 21.0 2.7 28 13-40 44-75 (219)
115 1p71_A DNA-binding protein HU; 22.7 44 0.0015 19.2 1.7 39 12-50 14-54 (94)
116 2ytc_A PRE-mRNA-splicing facto 22.6 65 0.0022 17.0 2.4 16 11-26 21-36 (85)
117 1iqt_A AUF1, heterogeneous nuc 22.5 52 0.0018 17.0 1.9 18 11-28 8-25 (75)
118 2e60_A SFRS8 protein, splicing 22.5 44 0.0015 20.1 1.8 21 16-36 24-44 (101)
119 3pco_B Phenylalanyl-tRNA synth 22.5 48 0.0017 26.6 2.4 27 13-39 768-795 (795)
120 2lxi_A RNA-binding protein 10; 22.1 56 0.0019 18.0 2.1 17 11-27 10-26 (91)
121 3tdq_A PILY2 protein; fimbiria 22.1 57 0.002 19.7 2.2 25 2-27 64-88 (98)
122 3lh2_S 4E10_1VI7A_S0_002_N (T8 22.0 72 0.0025 17.3 2.5 21 22-42 18-38 (76)
123 1ybt_A Hydrolase, alpha/beta h 21.8 57 0.0019 20.6 2.3 22 19-40 44-65 (184)
124 1owf_A IHF-alpha, integration 21.7 47 0.0016 19.2 1.8 39 12-50 16-56 (99)
125 1hwu_A PII protein; herbaspiri 21.6 1.3E+02 0.0045 17.5 4.2 39 4-47 2-40 (112)
126 3m20_A 4-oxalocrotonate tautom 21.6 96 0.0033 16.0 3.0 21 12-32 8-28 (62)
127 1why_A Hypothetical protein ri 21.5 74 0.0025 17.4 2.5 16 11-26 26-41 (97)
128 2aal_A Malonate semialdehyde d 21.4 1.1E+02 0.0038 18.1 3.5 23 11-33 73-95 (131)
129 2cqh_A IGF-II mRNA-binding pro 21.4 50 0.0017 17.9 1.8 21 11-31 17-37 (93)
130 3uwc_A Nucleotide-sugar aminot 21.3 85 0.0029 21.0 3.2 24 10-33 348-371 (374)
131 3bgh_A Protein HPAA, putative 21.3 94 0.0032 21.7 3.4 50 4-55 36-95 (236)
132 3gr1_A Protein PRGH; type III 21.2 1.2E+02 0.0041 20.8 4.0 40 6-55 158-197 (227)
133 3fpf_A Mtnas, putative unchara 21.2 1.1E+02 0.0037 21.6 3.8 49 3-55 188-236 (298)
134 2hl0_A Threonyl-tRNA synthetas 21.1 1.7E+02 0.0059 18.7 4.8 47 15-77 90-136 (143)
135 4fyk_A Deoxyribonucleoside 5'- 21.0 63 0.0022 20.7 2.4 33 6-39 4-36 (152)
136 2hc5_A ORF 99, hypothetical pr 20.9 1.2E+02 0.004 18.6 3.5 38 13-61 34-71 (117)
137 3lou_A Formyltetrahydrofolate 20.9 53 0.0018 23.1 2.1 37 2-44 9-45 (292)
138 1laj_A Capsid protein; anti-pa 20.8 72 0.0024 21.9 2.7 38 41-79 84-122 (217)
139 3fxd_A Protein ICMQ; helix bun 20.7 76 0.0026 17.5 2.3 22 11-32 2-23 (57)
140 2lor_A Transmembrane protein 1 26.1 21 0.00072 22.2 0.0 36 19-55 28-63 (108)
141 1yqh_A DUF77, IG hypothetical 20.5 90 0.0031 18.9 2.9 45 15-59 53-103 (109)
142 2kvc_A Putative uncharacterize 20.1 45 0.0015 20.4 1.4 19 9-27 34-52 (103)
No 1
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=99.96 E-value=9.8e-31 Score=164.58 Aligned_cols=74 Identities=16% Similarity=0.262 Sum_probs=71.5
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeecccccccccccccCCeeeEEEEEEEEeecCcccc
Q 034908 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQLIPTWEFNSGSIFE 75 (79)
Q Consensus 1 M~~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~I~k~~~g~Y~~~~~~~~~~~~~~e 75 (79)
||.||+++|++|++++++++++++++.++|.++||+|+++++||+|+|||+|+|+++|||+ ++.|.++|+.+.|
T Consensus 1 M~~YE~~~Il~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~-l~~f~a~~~~i~e 74 (101)
T 1cqm_A 1 MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFL-WYQVEMPEDRVND 74 (101)
T ss_dssp CEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEE-EEEEEECHHHHHH
T ss_pred CCceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEE-EEEEEeChHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 9999998887765
No 2
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=99.96 E-value=4.3e-30 Score=163.93 Aligned_cols=74 Identities=20% Similarity=0.373 Sum_probs=71.1
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeecccccccccccccCCeeeEEEEEEEEe-ecCcccc
Q 034908 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQLIPTWEF-NSGSIFE 75 (79)
Q Consensus 1 M~~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~I~k~~~g~Y~~~~~~~~-~~~~~~e 75 (79)
||.||+++|++|++++++++++++++.++|.++||+|+++++||+|+|||+|+|+++|||+ ++.|.+ +|+.+.|
T Consensus 7 M~~YE~~~Il~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~wG~R~LAY~I~K~~~G~Y~-l~~f~a~~~~~i~e 81 (110)
T 2j5a_A 7 LRYYETVFAVKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYF-LVQFKTENPQLPNE 81 (110)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECSSCSSSCSEEEEE-EEEEEESCTTHHHH
T ss_pred CCcceEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEE-EEEEEeCCHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999 999999 8887765
No 3
>3r8n_F 30S ribosomal protein S6; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_F 3fih_F* 3iy8_F 3j18_F* 2wwl_F 3oar_F 3oaq_F 3ofb_F 3ofa_F 3ofp_F 3ofx_F 3ofy_F 3ofo_F 3r8o_F 4a2i_F 4gd1_F 4gd2_F 2gy9_F 2gyb_F
Probab=99.96 E-value=4e-30 Score=161.67 Aligned_cols=73 Identities=25% Similarity=0.414 Sum_probs=70.5
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeecccccccccccccCCeeeEEEEEEEEeecCcccc
Q 034908 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQLIPTWEFNSGSIFE 75 (79)
Q Consensus 1 M~~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~I~k~~~g~Y~~~~~~~~~~~~~~e 75 (79)
||.||+|+|++|+++ ++++++++++.++|.++||+|+++++||+|+|||+|+|+++|||+ ++.|.++|+.+.|
T Consensus 1 M~~YE~~~Il~p~~~-e~~~~~~~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~~~G~Y~-l~~f~a~~~~i~e 73 (100)
T 3r8n_F 1 MRHYEIVFMVHPDQS-EQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYV-LMNVEAPQEVIDE 73 (100)
T ss_dssp CEEECCCCEECGGGT-THHHHHHHHHHHHHHTTTCBCCCCEEEEEECCSSCTTSCSCEEEE-ECCEEECTTTTHH
T ss_pred CCceEEEEEECCCch-HHHHHHHHHHHHHHHHCCCEEEEEEeeecccCCeEcCCCCEEEEE-EEEEEeChHHHHH
Confidence 999999999999997 799999999999999999999999999999999999999999999 9999999988876
No 4
>3r3t_A 30S ribosomal protein S6; structural genomics, center for structural genomics of infec diseases, csgid, beta-barrel, cytosol; 2.30A {Bacillus anthracis}
Probab=99.95 E-value=7.9e-31 Score=164.63 Aligned_cols=74 Identities=26% Similarity=0.442 Sum_probs=70.7
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeecccccccccccccCCeeeEEEEEEEEeecCcccc
Q 034908 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQLIPTWEFNSGSIFE 75 (79)
Q Consensus 1 M~~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~I~k~~~g~Y~~~~~~~~~~~~~~e 75 (79)
||.||+|+|++|++++++++++++++.++|.++||+|+++++||+|+|||||+|+++|||+ ++.|.++|+.+.|
T Consensus 4 M~~YE~~~Il~p~~~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~-l~~f~a~~~~i~e 77 (99)
T 3r3t_A 4 MRKYEIMYIIRPGVEEEAQKALVERFAGVLTNNGAEIINTKEWGKRRLAYEINDLREGFYM-ILNVNANAEAINE 77 (99)
T ss_dssp CCCCCCCCCCCTTSCHHHHHHHHHHHHHHHHTTTCCCCCCCCCCSCCCCCCCCCCCCSCCC-CCCCCCCHHHHHH
T ss_pred CcceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEeeccccCcCcCCCCEEEEE-EEEEEeCHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999 8888888877665
No 5
>1vmb_A 30S ribosomal protein S6; TM0603, structural genomics, JCSG, structure initiative, PSI, joint center for structural GENO translation; 1.70A {Thermotoga maritima} SCOP: d.58.14.1
Probab=99.95 E-value=8.6e-29 Score=164.18 Aligned_cols=74 Identities=26% Similarity=0.492 Sum_probs=71.9
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHhhhhccC-CcEEEeeecccccccccccccCCeeeEEEEEEEEeecCcccc
Q 034908 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGR-NGVLTDITSFGTVQLGYGIKKLDGRYYQLIPTWEFNSGSIFE 75 (79)
Q Consensus 1 M~~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~-GG~I~~~e~wG~R~LAY~I~k~~~g~Y~~~~~~~~~~~~~~e 75 (79)
||.||+|+|++|++++++++++++++.++|.++ ||+|+++++||+|+|||||+|+++|||+ ++.|.++|+.+.|
T Consensus 18 Mr~YE~~~Il~P~l~ee~v~~~ve~~~~~I~~~~GG~I~~ve~wG~R~LAY~I~K~~~G~Yv-l~~f~a~~~~i~E 92 (140)
T 1vmb_A 18 ERIYESMFIIAPNVPEEERENLVERVKKIIEERVKGKIDKVERMGMRKFAYEIKKFNEGDYT-VIYFRCDGQNLQE 92 (140)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEEEEEEETTEEEEEEE-EEEEEECSSSTHH
T ss_pred cccceEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCcccccccCCCCEEEEE-EEEEEECHHHHHH
Confidence 899999999999999999999999999999999 9999999999999999999999999999 9999999988876
No 6
>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F 1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F 2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F* 2vho_F ...
Probab=99.95 E-value=1.3e-28 Score=162.43 Aligned_cols=73 Identities=25% Similarity=0.414 Sum_probs=70.0
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeecccccccccccccCCeeeEEEEEEEEeecCcccc
Q 034908 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQLIPTWEFNSGSIFE 75 (79)
Q Consensus 1 M~~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~I~k~~~g~Y~~~~~~~~~~~~~~e 75 (79)
||+||+|+|++|+++ ++++++++++.++|.++||+|+++++||+|+|||+|+|+++|||+ ++.|.++|+.+.|
T Consensus 1 Mr~YE~~~Il~P~~~-e~v~~~ve~~~~~I~~~GG~I~~ve~wG~R~LAY~I~K~~~G~Y~-l~~f~a~~~~i~E 73 (135)
T 3i1m_F 1 MRHYEIVFMVHPDQS-EQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYV-LMNVEAPQEVIDE 73 (135)
T ss_dssp CCEECBEEEECSTTT-TSHHHHHHHHHHHHHHTTCEECCCEEEEEECCSSCTTSSSCEEEE-ECCEECCTTHHHH
T ss_pred CCceEEEEEECCCch-HHHHHHHHHHHHHHHHCCCEEEEEEeeccccCceEcCCCCeEEEE-EEEEEeCHHHHHH
Confidence 999999999999998 799999999999999999999999999999999999999999999 8999998887765
No 7
>3bbn_F Ribosomal protein S6; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.94 E-value=1.2e-27 Score=162.72 Aligned_cols=74 Identities=19% Similarity=0.377 Sum_probs=71.5
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeecccccccccccccCC---------eeeEEEEEEEEeecC
Q 034908 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLD---------GRYYQLIPTWEFNSG 71 (79)
Q Consensus 1 M~~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~I~k~~---------~g~Y~~~~~~~~~~~ 71 (79)
||.||+|+|++|++++++++++++++.++|.++||+|+++++||+|+|||+|+|++ +|||+ ++.|.++|+
T Consensus 62 Mr~YE~m~IlrPdl~eeev~alver~~~iI~~~GG~I~~ve~WG~RrLAY~IkK~~kgg~~~~h~eG~Yv-lm~F~a~p~ 140 (168)
T 3bbn_F 62 LRQYETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYL-LFTYFTKPE 140 (168)
T ss_dssp CEEEEEEEEECTTSCHHHHHSTTHHHHHHHTTTSCEEEEEEEEEECCCSSCTTSCSSSCSSCCCCCCEEE-EEEEEECTT
T ss_pred CCceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEecccccccceeccCcccccccccceEEEE-EEEEEeCHH
Confidence 89999999999999999999999999999999999999999999999999999999 79999 999999998
Q ss_pred cccc
Q 034908 72 SIFE 75 (79)
Q Consensus 72 ~~~e 75 (79)
.+.|
T Consensus 141 ~I~E 144 (168)
T 3bbn_F 141 SISP 144 (168)
T ss_dssp SSHH
T ss_pred HHHH
Confidence 8876
No 8
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=99.88 E-value=1.1e-23 Score=132.15 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=53.2
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeeccccccccccccc
Q 034908 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKK 54 (79)
Q Consensus 1 M~~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~I~k 54 (79)
||+||+++|++|++++++++++++++.++|.++||+|.++++||+|+|||||+|
T Consensus 43 Mr~YE~m~Il~P~l~ee~~~~~ve~~~~iI~~~gG~i~~ve~WG~R~LAY~I~K 96 (96)
T 2kjw_A 43 PGRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVEELGLRRLAYPIAK 96 (96)
T ss_dssp SSCEEEEEECCSSCCHHHHHHHHHHHHHHHHHHTCCCSCCEECCCCCCCCSCCC
T ss_pred hhhhheeeeeCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccccccccccCCC
Confidence 899999999999999999999999999999999999999999999999999986
No 9
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=99.03 E-value=1.6e-10 Score=69.39 Aligned_cols=35 Identities=11% Similarity=0.224 Sum_probs=33.6
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHhhhhccCCc
Q 034908 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNG 35 (79)
Q Consensus 1 M~~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG 35 (79)
.|.||+|+|++|+++++++++++++++++|+++||
T Consensus 43 ~r~YE~m~Il~P~l~ee~~~~~vek~~~~i~~~Gg 77 (77)
T 3zzp_A 43 PGRYEVNIVLNPNLDQSQLQNEKEIIQRALENYGA 77 (77)
T ss_dssp TTEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 47899999999999999999999999999999997
No 10
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=73.93 E-value=7.2 Score=22.91 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=29.4
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEee
Q 034908 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDI 40 (79)
Q Consensus 1 M~~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~ 40 (79)
|+-| .+.=++.. +++..+.-.+.+..++.+.||.+.--
T Consensus 3 m~aY-~i~~~~v~-d~e~y~~Y~~~~~~~l~~~GG~~l~r 40 (94)
T 3lo3_A 3 ATAY-IIVGLTPK-DAEKLQQYGARVASTLAKYSGEVLVK 40 (94)
T ss_dssp CCEE-EEEEEEEC-CHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred ccEE-EEEEEEEC-CHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 6667 44444433 68889999999999999999998754
No 11
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=69.91 E-value=6.3 Score=21.56 Aligned_cols=30 Identities=20% Similarity=0.154 Sum_probs=24.5
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHhhhhcc
Q 034908 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYG 32 (79)
Q Consensus 1 M~~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~ 32 (79)
||..+.-+. +..++++.+++++.+.+.+.+
T Consensus 1 MP~I~I~~~--~grs~eqK~~L~~~it~~l~~ 30 (72)
T 3mb2_A 1 MLLLRITML--EGRSTEQKAELARALSAAAAA 30 (72)
T ss_dssp CEEEEEEEE--SCCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEc--CCCCHHHHHHHHHHHHHHHHH
Confidence 677776655 567999999999999998876
No 12
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=66.63 E-value=4.6 Score=24.76 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=25.4
Q ss_pred EEcCCCCHHHHHHHHHHHhhhhccCCcEEEeee--ccccccccccccc
Q 034908 9 LLKPHVRKESLMELVARVGKHVYGRNGVLTDIT--SFGTVQLGYGIKK 54 (79)
Q Consensus 9 I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e--~wG~R~LAY~I~k 54 (79)
|--.+++-+ .+.+.|++.||.|.++| --|+|-.-..|+.
T Consensus 54 IEG~~idfd-------~I~~~IE~~Gg~IHSIDEVvaG~~ive~~~~~ 94 (96)
T 2x3d_A 54 IEGTSLNFD-------DIRKMLEEEGCAIHSIDEVVSGNRIIEGKIKD 94 (96)
T ss_dssp EEESSCCHH-------HHHHHHHHTTCEEEEEEEEEEESSCCCC----
T ss_pred EEecCCCHH-------HHHHHHHHcCCeEEeeeeeeeccccccccccC
Confidence 344566655 45567788999999999 4788777666653
No 13
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}
Probab=64.61 E-value=9 Score=22.93 Aligned_cols=50 Identities=16% Similarity=0.271 Sum_probs=35.0
Q ss_pred CceeEEEEEc--CCCCHHHHHHHHHHHhhhhccCCcEEEeeecccccccccccccC
Q 034908 2 PLYDCMLLLK--PHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKL 55 (79)
Q Consensus 2 ~~YE~~~I~~--p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~I~k~ 55 (79)
-.-..+++++ |.-++.+++++.+++.+++. .|..+.+.+ ...+||.|++-
T Consensus 2 ~~~kv~v~l~V~P~d~etDl~~L~~~vk~~~~-~gl~w~~~k---~~pIafGlk~L 53 (91)
T 2yy3_A 2 SDFNLVGVIRVMPTDPDVNLDELEEKLKKVIP-EKYGLAKVE---REPIAFGLVAL 53 (91)
T ss_dssp CSCCEEEEEEEEESSTTSCHHHHHHHHHHHSC-TTCEEEEEE---EEECTTSCEEE
T ss_pred CcceEEEEEEECCCCCCCCHHHHHHHHHHhcc-CCcEEeeee---EEEEEcceeeE
Confidence 3445556665 66667778899999999866 687777644 46778887763
No 14
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=62.05 E-value=4.9 Score=24.64 Aligned_cols=33 Identities=6% Similarity=0.183 Sum_probs=22.3
Q ss_pred EEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeec--ccccc
Q 034908 8 LLLKPHVRKESLMELVARVGKHVYGRNGVLTDITS--FGTVQ 47 (79)
Q Consensus 8 ~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~--wG~R~ 47 (79)
.|--.+++-+ .+.+.|++.||.|.++|. -|+|-
T Consensus 54 tiEG~~id~d-------~I~~~IE~~Gg~IHSIDEVvaG~~i 88 (97)
T 2raq_A 54 TIQGNDLDFD-------EITRAIESYGGSIHSVDEVVAGRTM 88 (97)
T ss_dssp EEECSSCCHH-------HHHHHHHHTTCEEEEEEEEEEESSC
T ss_pred EEEecCCCHH-------HHHHHHHHcCCeEEeeeeeeeccee
Confidence 3444566655 455677889999999993 55553
No 15
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=61.76 E-value=1.4 Score=27.53 Aligned_cols=35 Identities=9% Similarity=0.218 Sum_probs=24.0
Q ss_pred EEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeec
Q 034908 8 LLLKPHVRKESLMELVARVGKHVYGRNGVLTDITS 42 (79)
Q Consensus 8 ~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~ 42 (79)
|.++++.+.-+...-++.+..+|..+||+|...-.
T Consensus 17 Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP 51 (106)
T 2l42_A 17 FYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKP 51 (106)
T ss_dssp BEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECC
T ss_pred EEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCc
Confidence 44455544444455577889999999999986543
No 16
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=60.44 E-value=12 Score=22.57 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=25.8
Q ss_pred cCCCCHHHHHHHHHHHhhhhccCCc--------EEEee--eccc-------ccc-cccccc
Q 034908 11 KPHVRKESLMELVARVGKHVYGRNG--------VLTDI--TSFG-------TVQ-LGYGIK 53 (79)
Q Consensus 11 ~p~l~~e~~~~~~~~~~~~I~~~GG--------~I~~~--e~wG-------~R~-LAY~I~ 53 (79)
.+..++++.+++.+.+.+.+.+.=| .|.++ ++|| .++ |.|.|+
T Consensus 67 ~~grt~eqK~~l~~~l~~~l~~~lg~~~~~v~V~i~e~~~~~wg~gG~~~~~~~~~~~~~~ 127 (128)
T 1mww_A 67 MAGRMEGTKKRLIKMLFSELEYKLGIRAHDVEITIKEQPAHCWGFRGMTGDEARDLDYDIY 127 (128)
T ss_dssp ETTCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECGGGEEETTEETTTCC-------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEECCHHHeeECCEEHHHHhccCCccc
Confidence 3567999999999999998886321 34444 4788 333 888775
No 17
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=59.30 E-value=6.1 Score=23.64 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=25.4
Q ss_pred CceeEEEEEc-CCCCHHHHHHHHHHHhhhhccCCcEEE
Q 034908 2 PLYDCMLLLK-PHVRKESLMELVARVGKHVYGRNGVLT 38 (79)
Q Consensus 2 ~~YE~~~I~~-p~l~~e~~~~~~~~~~~~I~~~GG~I~ 38 (79)
|.|=+..... +....+.++++++.+.+.|.++||+..
T Consensus 52 P~Y~i~~~~~D~k~ge~~L~~ai~~i~~~i~~~gG~~~ 89 (93)
T 2qn6_B 52 PRYRVDVVGTNPKEASEALNQIISNLIKIGKEENVDIS 89 (93)
T ss_dssp TEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred CeEEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 4565555542 222355677888889999999999865
No 18
>3ip0_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; alpha beta, ATP-binding, folate biosynthesis, nucleotide-binding; HET: APC HHR HHS; 0.89A {Escherichia coli} PDB: 1eq0_A 1dy3_A* 1ex8_A* 1hka_A 1eqm_A* 1rao_A* 1rb0_A* 2f63_A 2f65_A 1q0n_A* 3ud5_A* 3ude_A* 3udv_A* 4f7v_A* 3kue_A 3hd2_A* 1f9h_A* 1g4c_A 1kbr_A 1hq2_A* ...
Probab=58.89 E-value=11 Score=24.58 Aligned_cols=45 Identities=16% Similarity=0.288 Sum_probs=32.7
Q ss_pred ceeEEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeecccccccccc
Q 034908 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYG 51 (79)
Q Consensus 3 ~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~ 51 (79)
++=+++.+..++++.++-+.++++ ++.-|.+++...||-|.|-=.
T Consensus 53 FlN~vv~~~T~l~p~~LL~~l~~I----E~~~GR~r~~~~~gpRtiDlD 97 (158)
T 3ip0_A 53 YLNAAVALETSLAPEELLNHTQRI----ELQQGRVRKAERWGPRTLDLD 97 (158)
T ss_dssp EEEEEEEEEECSCHHHHHHHHHHH----HHHTTCCCCSSTTCCCSCEEE
T ss_pred hheeeeeeccCCCHHHHHHHHHHH----HHHhCCCcCcccCCCccHhhh
Confidence 345778888899988876665554 445667788889999987533
No 19
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=58.81 E-value=8.8 Score=23.63 Aligned_cols=28 Identities=11% Similarity=0.194 Sum_probs=21.5
Q ss_pred HHHhhhhccCCcEEEeee--cccccccccc
Q 034908 24 ARVGKHVYGRNGVLTDIT--SFGTVQLGYG 51 (79)
Q Consensus 24 ~~~~~~I~~~GG~I~~~e--~wG~R~LAY~ 51 (79)
+.+.+.|++.||+|.++| --|+|-.-|.
T Consensus 63 d~I~~~IE~~GgvIHSIDEVvaG~~iv~~~ 92 (100)
T 3bpd_A 63 EQIKGVIEDMGGVIHSVDEVVAGKIIVESV 92 (100)
T ss_dssp HHHHHHHHTTTCEEEEEEEEEEESSCCCCC
T ss_pred HHHHHHHHHcCCeEEeeeeeeecceeeeee
Confidence 356678889999999999 4677766553
No 20
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=57.47 E-value=11 Score=24.72 Aligned_cols=55 Identities=11% Similarity=0.118 Sum_probs=42.6
Q ss_pred CCceeE----EEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeecccccccccccccC
Q 034908 1 MPLYDC----MLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKL 55 (79)
Q Consensus 1 M~~YE~----~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~I~k~ 55 (79)
|+.+|- +.|+...-+++=..++++.+.+.+.++|-.|.-+.-=|-..||+-+++-
T Consensus 5 m~~~~~~~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~l 63 (157)
T 2i0f_A 5 MSKHEADAPHLLIVEARFYDDLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFA 63 (157)
T ss_dssp ------CCCEEEEEEECSSHHHHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHH
T ss_pred cccccCCCcEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCeEEEECCcHHHHHHHHHHH
Confidence 455554 6777778888989999999999999999878777888999999988864
No 21
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=57.03 E-value=16 Score=18.91 Aligned_cols=31 Identities=26% Similarity=0.189 Sum_probs=23.7
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHhhhhccC
Q 034908 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGR 33 (79)
Q Consensus 1 M~~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~ 33 (79)
||.-++-.. +..++++.+++.+.+.+.+.+.
T Consensus 1 MP~i~i~~~--~g~s~eqk~~l~~~lt~~l~~~ 31 (64)
T 3abf_A 1 MVVLKVTLL--EGRPPEKKRELVRRLTEMASRL 31 (64)
T ss_dssp CEEEEEEEE--TTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEC--CCCCHHHHHHHHHHHHHHHHHH
Confidence 666666644 3468999999999999998863
No 22
>3fmb_A Dimeric protein of unknown function and ferredoxi fold; YP_212648.1, stress responsive A/B barrel domain; HET: MSE; 1.85A {Bacteroides fragilis}
Probab=54.74 E-value=7.2 Score=23.82 Aligned_cols=58 Identities=12% Similarity=0.108 Sum_probs=36.9
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeee--cccccccccccccCCeeeEEEEEEEEeecC
Q 034908 7 MLLLKPHVRKESLMELVARVGKHVYGRNGVLTDIT--SFGTVQLGYGIKKLDGRYYQLIPTWEFNSG 71 (79)
Q Consensus 7 ~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e--~wG~R~LAY~I~k~~~g~Y~~~~~~~~~~~ 71 (79)
++=++|+.++++.++.++++.+.+....|.|-.+. .||.-. + ...|+-. .+...|++.
T Consensus 26 lfklK~~~~~~~~~~~~~~~~~~l~~L~~~IP~i~~~~vG~~~-----s-~~~~yd~-~l~~~F~s~ 85 (118)
T 3fmb_A 26 LFKLRDDVPVEEKLVVMNSFKEAIEALPAKISVIRKIEVGLNM-----N-PGETWNI-ALYSEFDNL 85 (118)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHTGGGTCTTCSEEEEEECC-----C-TTCCCCE-EEEEEESSH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHhhccCCCeEEEEEeccC-----C-CCCCceE-EEEEEECCH
Confidence 44467999999988888877777766655444333 356542 1 2346666 667777654
No 23
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=54.45 E-value=16 Score=19.72 Aligned_cols=32 Identities=6% Similarity=0.048 Sum_probs=21.9
Q ss_pred cCCCCHHHHHHHHHHHh---hhhccCCcEEEeeec
Q 034908 11 KPHVRKESLMELVARVG---KHVYGRNGVLTDITS 42 (79)
Q Consensus 11 ~p~l~~e~~~~~~~~~~---~~I~~~GG~I~~~e~ 42 (79)
.++.+++++.+++.++. .+....|+.|.++.-
T Consensus 15 p~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~ 49 (87)
T 2hzc_A 15 PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI 49 (87)
T ss_dssp CTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE
T ss_pred CCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEe
Confidence 36889999999999885 322334457776653
No 24
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=53.09 E-value=21 Score=18.04 Aligned_cols=31 Identities=32% Similarity=0.393 Sum_probs=23.4
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHhhhhccC
Q 034908 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGR 33 (79)
Q Consensus 1 M~~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~ 33 (79)
||.-++-++ +..++++.+++.+.+.+.+.+.
T Consensus 3 MP~i~i~~~--~g~s~e~k~~l~~~l~~~l~~~ 33 (63)
T 2x4k_A 3 MPIVNVKLL--EGRSDEQLKNLVSEVTDAVEKT 33 (63)
T ss_dssp CCEEEEEEE--SCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEc--CCCCHHHHHHHHHHHHHHHHHH
Confidence 666666444 3568999999999999988763
No 25
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=52.95 E-value=25 Score=20.78 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHHHHhhhhccCCcEEEeee
Q 034908 12 PHVRKESLMELVARVGKHVYGRNGVLTDIT 41 (79)
Q Consensus 12 p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e 41 (79)
-.+++++.+.+++-++..+-..+|.+.++.
T Consensus 36 ~~ld~~~AqRivDF~sG~~yal~G~i~kI~ 65 (87)
T 3p04_A 36 SLLSREEARRIVDFAAGLCFALHGKMQKID 65 (87)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCHHHHHHHHHHhccceEEeccEEEEEc
Confidence 466777788888888888888888887773
No 26
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=52.86 E-value=21 Score=19.75 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=23.5
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHhhhhcc
Q 034908 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYG 32 (79)
Q Consensus 1 M~~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~ 32 (79)
||..++-+. +..++++.+++.+.+.+.+.+
T Consensus 1 MP~I~I~~~--~Grs~eqK~~L~~~it~~l~~ 30 (76)
T 3ej9_A 1 MPMISCDMR--YGRTDEQKRALSAGLLRVISE 30 (76)
T ss_dssp -CEEEEEEE--TTCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEc--CCCCHHHHHHHHHHHHHHHHH
Confidence 777776554 457999999999999999876
No 27
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=51.07 E-value=21 Score=20.99 Aligned_cols=32 Identities=6% Similarity=0.067 Sum_probs=24.8
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeecc
Q 034908 6 CMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSF 43 (79)
Q Consensus 6 ~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~w 43 (79)
.+|+++|+.+..|+++.++++-+ -.|.++.-+
T Consensus 25 ~~F~V~~~AnK~qIK~ave~lf~------VkV~~VNT~ 56 (85)
T 1vq8_S 25 LQFAVDDRASKGEVADAVEEQYD------VTVEQVNTQ 56 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHC------CCEEEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHhC------CCceEEEee
Confidence 68999999999999999988764 355555443
No 28
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=50.31 E-value=22 Score=20.99 Aligned_cols=23 Identities=9% Similarity=0.192 Sum_probs=20.3
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhh
Q 034908 6 CMLLLKPHVRKESLMELVARVGK 28 (79)
Q Consensus 6 ~~~I~~p~l~~e~~~~~~~~~~~ 28 (79)
.+|+++|+.+..|+++.++++-+
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~ 48 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFN 48 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCHHHHHHHHHHHcC
Confidence 68999999999999999988754
No 29
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1
Probab=49.43 E-value=8.5 Score=22.13 Aligned_cols=21 Identities=10% Similarity=0.180 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhhhccCCcE
Q 034908 16 KESLMELVARVGKHVYGRNGV 36 (79)
Q Consensus 16 ~e~~~~~~~~~~~~I~~~GG~ 36 (79)
+.++..++++++..|.++|-.
T Consensus 14 d~~~~~iIdktA~fVaknG~~ 34 (78)
T 1x4o_A 14 DEEAKNLAEKLARFIADGGPE 34 (78)
T ss_dssp CHHHHHHHHHHHHHHHHSCTT
T ss_pred CHHHHHHHHHHHHHHHHcCHH
Confidence 468999999999999999854
No 30
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=48.93 E-value=23 Score=21.07 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=21.0
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhhh
Q 034908 6 CMLLLKPHVRKESLMELVARVGKH 29 (79)
Q Consensus 6 ~~~I~~p~l~~e~~~~~~~~~~~~ 29 (79)
.+|+++|+.+..|+++.++++-++
T Consensus 24 ~~F~V~~~AnK~qIK~aVe~lf~V 47 (92)
T 3tve_T 24 YTFWVHPKATKTEIKNAVETAFKV 47 (92)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHhCC
Confidence 689999999999999999988643
No 31
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=48.81 E-value=23 Score=21.11 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=21.0
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhhh
Q 034908 6 CMLLLKPHVRKESLMELVARVGKH 29 (79)
Q Consensus 6 ~~~I~~p~l~~e~~~~~~~~~~~~ 29 (79)
.+|+++|+.+..|+++.++.+-++
T Consensus 30 ~~F~V~~~AnK~eIK~AVE~lf~V 53 (93)
T 3r8s_T 30 IVLKVAKDATKAEIKAAVQKLFEV 53 (93)
T ss_dssp EEEEECSSCCHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCHHHHHHHHHHHcCC
Confidence 689999999999999999988653
No 32
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=47.76 E-value=44 Score=20.15 Aligned_cols=56 Identities=18% Similarity=0.131 Sum_probs=36.7
Q ss_pred EcCCCCHHHHHHHHHHHhhhhccCCcEEEeeecccccccccccccCCeeeEEEEEEEEeecC
Q 034908 10 LKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQLIPTWEFNSG 71 (79)
Q Consensus 10 ~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~I~k~~~g~Y~~~~~~~~~~~ 71 (79)
++++.++++++++.+.+..+...-.| |++++ ||.-.- .....+|+-. .+...|++.
T Consensus 29 lK~~~~~~~~~~~~~~l~~L~~~ip~-i~~~~-~G~~~s---~e~~~~g~~~-~l~~~F~s~ 84 (121)
T 3bb5_A 29 PEGEGAMDRIMEAMAILDGLAPELPG-LTEFR-HGPNRD---FEQKSERYPY-GFLCTFTDK 84 (121)
T ss_dssp BCSTTHHHHHHHHHHHHHHHGGGCTT-EEEEE-EEEBCC---TTSSCTTCCE-EEEEEESSH
T ss_pred ECCCCCHHHHHHHHHHHHHHHhcCCC-eEEEE-ECCCCC---ccccCCCeeE-EEEEEECCH
Confidence 55788888899999998887665555 45554 676432 1233456666 667777664
No 33
>1nxi_A Conserved hypothetical protein VC0424; structural genomics, AB sandwich, COG 3076, ATCC NO. 51394D, NESG target OP3, PSI; NMR {Vibrio cholerae} SCOP: d.58.47.1
Probab=46.85 E-value=26 Score=21.90 Aligned_cols=40 Identities=13% Similarity=0.087 Sum_probs=33.7
Q ss_pred ceeEEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeecccc
Q 034908 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGT 45 (79)
Q Consensus 3 ~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~ 45 (79)
.|.+.++..-.++.+.+.+....+.++..+.||. -|-||.
T Consensus 81 ~~~~~i~~~~~l~~~~I~~~~~~L~~lA~~~~G~---YDGWGt 120 (132)
T 1nxi_A 81 LLCFDATMQSALDAKLIDEQVEKLVNLAEKFDII---YDGWGT 120 (132)
T ss_dssp BEEEEEEEEECSCHHHHHHHHHHHHHHHHHHTCE---EEEEEE
T ss_pred eEEEEEEEeccCCHHHHHHHHHHHHHHHHHhCcE---eeCcce
Confidence 4788888877778889999999999999999994 566775
No 34
>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus fumigatus AF293}
Probab=46.15 E-value=22 Score=22.85 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=25.4
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHhhhhccCCcE
Q 034908 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGV 36 (79)
Q Consensus 1 M~~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~ 36 (79)
||+.-. .+..-.+++++.+++++.+.+.+.+. |.
T Consensus 22 MP~v~I-~~~~G~~t~eqk~~L~~~It~alve~-g~ 55 (161)
T 3c6v_A 22 MPRWLI-QHSPNTLTPEEKSHLAQQITQAYVGF-GL 55 (161)
T ss_dssp CCEEEE-EECTTSSCHHHHHHHHHHHHHHHHHT-TC
T ss_pred CCEEEE-EEcCCCCCHHHHHHHHHHHHHHHHHh-Cc
Confidence 555544 34444469999999999999999887 63
No 35
>1cbk_A Protein (7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase); transferase; HET: ROI; 2.02A {Haemophilus influenzae} SCOP: d.58.30.1
Probab=46.06 E-value=25 Score=22.88 Aligned_cols=45 Identities=13% Similarity=0.283 Sum_probs=32.2
Q ss_pred ceeEEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeeccccccccccc
Q 034908 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGI 52 (79)
Q Consensus 3 ~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~I 52 (79)
++=+++.+..++++.++-+.++++... -|.++. ..||-|.|==.|
T Consensus 54 FlN~v~~~~T~l~p~~LL~~l~~IE~~----~GR~r~-~r~gpRtlDlDI 98 (160)
T 1cbk_A 54 YVNAVAKIETELSPLKLLDELQRIENE----QGRVRL-RRWGERTLDLDI 98 (160)
T ss_dssp EEEEEEEEEECSCHHHHHHHHHHHHHH----TTCCBC-STTSCBSCEEEE
T ss_pred ceEEEEEEEeCCCHHHHHHHHHHHHHH----cCCCCC-CCCCCceeeEee
Confidence 456778888899998887766665544 456666 789999875433
No 36
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=45.57 E-value=22 Score=17.76 Aligned_cols=18 Identities=11% Similarity=0.279 Sum_probs=15.2
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 034908 11 KPHVRKESLMELVARVGK 28 (79)
Q Consensus 11 ~p~l~~e~~~~~~~~~~~ 28 (79)
.|+|++++....++.+.+
T Consensus 15 ~~nLtEeQrn~yI~slkd 32 (34)
T 1l6x_B 15 DPNLNEEQRNAKIKSIRD 32 (34)
T ss_dssp CTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHhHHHHHhc
Confidence 389999999999888764
No 37
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=45.22 E-value=43 Score=19.28 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=38.8
Q ss_pred ceeEEEE--EcCCCCHHHHHHHHHHHhhhhccCCcEEEeeecccccccccccccCCeeeEEEEEEEEeecC
Q 034908 3 LYDCMLL--LKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQLIPTWEFNSG 71 (79)
Q Consensus 3 ~YE~~~I--~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~I~k~~~g~Y~~~~~~~~~~~ 71 (79)
....+++ ++++.++++++++.+.+.++-..-.| |++++ +|.-.- ...+|+=+ .+...|++.
T Consensus 4 Mi~HiVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~-i~~~~-~G~~~~-----~~~~~~~~-~~~~~F~s~ 66 (103)
T 2qyc_A 4 MFLHVVMMEFDDGIDAGFFRTVDEYVARMKRECDG-LLLYH-FGENVA-----ARSQGYTH-ATSSAFVDA 66 (103)
T ss_dssp EEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHSTT-EEEEE-EEECCC-----TTCTTCCE-EEEEEESSH
T ss_pred eEEEEEEEEECCCCCHHHHHHHHHHHHHhhhcCCC-eEEEE-ECCCCC-----CCCCCccE-EEEEEECCH
Confidence 3344444 55888999999999998888665665 45554 675432 23345555 556777654
No 38
>3bma_A D-alanyl-lipoteichoic acid synthetase; structural genomics, D-alanyl-lipoteichoic acid biosynthesis structure initiative, PSI-2; 2.24A {Streptococcus pneumoniae}
Probab=43.84 E-value=42 Score=25.00 Aligned_cols=42 Identities=12% Similarity=0.272 Sum_probs=35.4
Q ss_pred eEEEEEcC---------CCCHHHHHHHHHHHhhhhccCCc-EEEeeeccccc
Q 034908 5 DCMLLLKP---------HVRKESLMELVARVGKHVYGRNG-VLTDITSFGTV 46 (79)
Q Consensus 5 E~~~I~~p---------~l~~e~~~~~~~~~~~~I~~~GG-~I~~~e~wG~R 46 (79)
+.+||+-| .++.+.++...+++...+.++|. .|.+..+-|-.
T Consensus 291 ~vlfVi~PVNgkWydytGl~~e~r~~~~~KIk~~l~s~Gf~~i~D~s~~~ye 342 (407)
T 3bma_A 291 NPIFIIPPVNKKWMDYAGLREDMYQQTVQKIRYQLESQGFTNIADFSKDGGE 342 (407)
T ss_dssp EEEEEECCCCHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCCCEEECTTCTTS
T ss_pred ceEEEEeCCchHHHHhcCCCHHHHHHHHHHHHHHHHHCCCcceeeccccCCC
Confidence 56777777 57899999999999999999996 99888776644
No 39
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=43.64 E-value=15 Score=29.46 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHHHHhhhhccCCcEEEeee
Q 034908 13 HVRKESLMELVARVGKHVYGRNGVLTDIT 41 (79)
Q Consensus 13 ~l~~e~~~~~~~~~~~~I~~~GG~I~~~e 41 (79)
.|++++++++.+++.+.+.+.|+++|..+
T Consensus 755 TLtd~ei~~~~~~i~~~l~~~ga~LR~~~ 783 (785)
T 1b7y_B 755 TLRDEEVEEAVSRVAEALRARGFGLRGLD 783 (785)
T ss_dssp CCCHHHHHHHHHHHHHHHHCC--------
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEeecCC
Confidence 78999999999999999987788888654
No 40
>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A
Probab=42.91 E-value=33 Score=18.96 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=19.6
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEee
Q 034908 7 MLLLKPHVRKESLMELVARVGKHVYGRNGVLTDI 40 (79)
Q Consensus 7 ~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~ 40 (79)
++.++++.+++++++..+. +.+.||.|...
T Consensus 6 IV~lk~~~~~~~~~~~~~~----~~~~gg~i~~~ 35 (76)
T 1v5i_B 6 IVIFKNDVSEDKIRETKDE----VIAEGGTITNE 35 (76)
T ss_dssp EEEECTTCCHHHHHHHHHH----HHHHTCCCCEE
T ss_pred EEEECCCCCHHHHHHHHHH----HHhhCCceEEE
Confidence 6778889888877655443 44457766544
No 41
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=42.55 E-value=29 Score=20.75 Aligned_cols=24 Identities=8% Similarity=0.166 Sum_probs=21.1
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhhh
Q 034908 6 CMLLLKPHVRKESLMELVARVGKH 29 (79)
Q Consensus 6 ~~~I~~p~l~~e~~~~~~~~~~~~ 29 (79)
.+|+++|+.+..|+++.++++-++
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~V 48 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFGV 48 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCC
Confidence 589999999999999999988654
No 42
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=42.55 E-value=12 Score=20.64 Aligned_cols=49 Identities=14% Similarity=0.115 Sum_probs=32.3
Q ss_pred EcCCCCHHHHHHHHHHHhhhhccC-C-------cEEEeee--cccccccccccccCCeee
Q 034908 10 LKPHVRKESLMELVARVGKHVYGR-N-------GVLTDIT--SFGTVQLGYGIKKLDGRY 59 (79)
Q Consensus 10 ~~p~l~~e~~~~~~~~~~~~I~~~-G-------G~I~~~e--~wG~R~LAY~I~k~~~g~ 59 (79)
....+++++.+++.+.+.+.+.+. | -.|.+++ +||. .+.=.|+...+.-
T Consensus 8 ~~Grls~eqk~~L~~~l~~~l~~~lgip~~~v~V~i~e~~~~~w~~-v~~~~~~~~~~~l 66 (76)
T 1gyx_A 8 FPRELDEQQKAALAADITDVIIRHLNSKDSSISIALQQIQPESWQA-IWDAEIAPQMEAL 66 (76)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEECCGGGHHH-HHHHTTTTTTTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCcCCceEEEEEEEeChHHEEE-EEchhhccChhhe
Confidence 344459999999999999998874 3 2455553 7988 5544555444433
No 43
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=40.21 E-value=21 Score=22.78 Aligned_cols=35 Identities=9% Similarity=-0.135 Sum_probs=27.1
Q ss_pred ceeEEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeecc
Q 034908 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSF 43 (79)
Q Consensus 3 ~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~w 43 (79)
.|.+.++. || ...++.++++++.++|+-|.+..-.
T Consensus 6 ~~~itv~~-~D-----rpGiva~vt~~La~~g~NI~d~~~~ 40 (192)
T 1u8s_A 6 HLVITAVG-TD-----RPGICNEVVRLVTQAGCNIIDSRIA 40 (192)
T ss_dssp EEEEEEEE-EC-----CTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred EEEEEEEc-CC-----CCcHHHHHHHHHHHCCCCEEeeeee
Confidence 46666655 45 4568889999999999999987754
No 44
>2ffg_A YKUJ; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, unknown function; 2.31A {Bacillus subtilis} SCOP: d.317.1.1
Probab=39.23 E-value=13 Score=22.32 Aligned_cols=38 Identities=11% Similarity=0.038 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhhhccCC--c--EEEeeeccccccccccccc
Q 034908 17 ESLMELVARVGKHVYGRN--G--VLTDITSFGTVQLGYGIKK 54 (79)
Q Consensus 17 e~~~~~~~~~~~~I~~~G--G--~I~~~e~wG~R~LAY~I~k 54 (79)
.++.++++|+.+...+.. | ..|.++..|..+.-=.-..
T Consensus 2 SqL~~II~RL~AM~~d~~~~~e~q~R~FE~~G~~~c~V~y~~ 43 (87)
T 2ffg_A 2 SQLMGIITRLQSLQETAEAANEPMQRYFEVNGEKICSVKYFE 43 (87)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEEET
T ss_pred cHHHHHHHHHHHHHhccccCCccceeeeccCCEEEEEEEEec
Confidence 368899999999998765 4 7999999999876533333
No 45
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=39.20 E-value=58 Score=19.07 Aligned_cols=56 Identities=23% Similarity=0.244 Sum_probs=34.8
Q ss_pred EcCCCCHHHHHHHHHHHhhhhccCCcEEEeeecccccccccccccCCeeeEEEEEEEEeecC
Q 034908 10 LKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQLIPTWEFNSG 71 (79)
Q Consensus 10 ~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~I~k~~~g~Y~~~~~~~~~~~ 71 (79)
++++.++++++++.+.+.++-..--| |+++ .||.-.- .....+|+=+ .+...|++.
T Consensus 19 lk~~~~~~~~~~~~~~l~~L~~~ip~-i~~~-~~G~~~~---~~~~~~~~d~-~l~~~F~s~ 74 (112)
T 1q4r_A 19 FKDGVSPEKIEELIKGYANLVNLIEP-MKAF-HWGKDVS---IENLHQGYTH-IFESTFESK 74 (112)
T ss_dssp ECTTCCHHHHHHHHHHHHTHHHHCTT-CCEE-EEEECCC---SSSCSTTCCE-EEEEEESCH
T ss_pred ECCCCCHHHHHHHHHHHHHHhhhCCc-eEEE-EEccCCC---ccccCCCccE-EEEEEECCH
Confidence 56888999999998888777654454 4444 3676332 1123346655 566777654
No 46
>3qbc_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; protein-inhibitor complex, ferredoxin-like fold; HET: B55; 1.65A {Staphylococcus aureus}
Probab=38.08 E-value=30 Score=22.55 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=32.8
Q ss_pred ceeEEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeeccccccccccc
Q 034908 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGI 52 (79)
Q Consensus 3 ~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~I 52 (79)
++=+++.+...+++.++-+.++.+.... |.++. ..||-|.|==.|
T Consensus 57 FlN~v~~~~T~l~p~~LL~~l~~IE~~~----GR~R~-~r~gpRtlDlDI 101 (161)
T 3qbc_A 57 FLNLCVEIQTTLTVLQLLECCLKTEECL----HRIRK-ERWGPRTLDVDI 101 (161)
T ss_dssp EEEEEEEEEECSCHHHHHHHHHHHHHHH----HSCSC-GGGCCCCCEEEE
T ss_pred ceEEEEEEEeCCCHHHHHHHHHHHHHHh----CCCCC-CcCCCceEeEEE
Confidence 4567888888999999888777776654 44555 689999875333
No 47
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=38.07 E-value=64 Score=19.24 Aligned_cols=56 Identities=13% Similarity=0.149 Sum_probs=35.3
Q ss_pred EEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeecccccccccccccCCeeeEEEEEEEEeecC
Q 034908 8 LLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQLIPTWEFNSG 71 (79)
Q Consensus 8 ~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~I~k~~~g~Y~~~~~~~~~~~ 71 (79)
+=++|+.++++++++.+.+.++-..-.| |+++ .||.-.- ...+|+=. .+...|++.
T Consensus 28 fklK~~~s~e~~~~~~~~l~~L~~~ip~-i~~~-~~G~~~s-----~~~~g~d~-~l~~~F~s~ 83 (116)
T 3bgu_A 28 FRWNDTVTPDQVEQVITALSKLPAAIPE-LKNY-AFGADLG-----LAAGNYDF-AVVADLDGE 83 (116)
T ss_dssp EEECTTCCHHHHHHHHHHHHHCCCCCTT-EEEE-EEEECCS-----CSTTCCSE-EEEEEEEHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHhhcCCc-eEEE-EEccCCC-----CCCCCeeE-EEEEEECCH
Confidence 3466888999999999998887554554 3444 3665443 23345555 556666553
No 48
>3bn7_A Ferredoxin-like protein; stress responsive A/B barre structural genomics, joint center for structural genomics; HET: MSE; 1.64A {Caulobacter crescentus}
Probab=36.53 E-value=70 Score=19.22 Aligned_cols=60 Identities=17% Similarity=0.093 Sum_probs=37.2
Q ss_pred EEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeecccccccccccccCCeeeEEEEEEEEeecC
Q 034908 8 LLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQLIPTWEFNSG 71 (79)
Q Consensus 8 ~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~I~k~~~g~Y~~~~~~~~~~~ 71 (79)
+=++++.++++++++++.+.++- +-.| |++++ ||.-.-+-+-....+|+=. .+...|++.
T Consensus 27 fklK~~~~~~~~~~~~~~l~~L~-~Ip~-i~~~~-vG~~~s~e~R~~~~~g~d~-~l~~~F~s~ 86 (120)
T 3bn7_A 27 FWLKNPGDKADRDKLIAGLKALK-AIDV-IQQLH-VGVPAATEKRDVVDNSYDV-SELMVFKSV 86 (120)
T ss_dssp EEESSTTCHHHHHHHHHHHHGGG-GSTT-CSEEE-EECCCCCCCCTTCCCCCSE-EEEEEESSH
T ss_pred EEECCCCCHHHHHHHHHHHHhcc-CCCC-eEEEE-EccCCCcccccccCCCccE-EEEEEECCH
Confidence 44678989999999999998876 5554 34443 6765443211122445555 556677654
No 49
>1nz0_A Ribonuclease P protein component; endonuclease, RNAse, ALFA-beta sandwich, dimer, structural genomics, BSGC structure funded by NIH; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.14.1.2 PDB: 3ok7_A 3okb_A 3q1q_A 3q1r_A
Probab=36.10 E-value=12 Score=22.75 Aligned_cols=32 Identities=3% Similarity=0.114 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCC----HHHHHHHHHHHhhhhccCC
Q 034908 3 LYDCMLLLKPHVR----KESLMELVARVGKHVYGRN 34 (79)
Q Consensus 3 ~YE~~~I~~p~l~----~e~~~~~~~~~~~~I~~~G 34 (79)
-|.+++|++|... +..-+++.+.+..++...|
T Consensus 82 g~d~Vviar~~~~~~~~~~~~~~l~~~l~~ll~~~~ 117 (118)
T 1nz0_A 82 GFDIVVIPRKKLSEEFERVDFWTVREKLLNLLKRIE 117 (118)
T ss_dssp SEEEEEEECHHHHHHGGGSCHHHHHHHHHHHHTTCC
T ss_pred CcEEEEEecccccccccCCCHHHHHHHHHHHHHHhc
Confidence 4899999997654 3445555566666655544
No 50
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=36.05 E-value=49 Score=21.75 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=27.5
Q ss_pred eeEEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEE
Q 034908 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLT 38 (79)
Q Consensus 4 YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~ 38 (79)
-|+++-+...|+.++..+++..+.+-.....|.+.
T Consensus 72 re~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~ 106 (185)
T 2ns6_A 72 KEVEFALPVELTLDQQKALASEFAQHLTGAERLPY 106 (185)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCE
T ss_pred EEEEEECCccCCHHHHHHHHHHHHHHHHHhcCCEE
Confidence 37788888899999999999998887665555543
No 51
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=35.89 E-value=34 Score=21.39 Aligned_cols=35 Identities=9% Similarity=0.134 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEee
Q 034908 5 DCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDI 40 (79)
Q Consensus 5 E~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~ 40 (79)
+-++|+. ..++.+++++.+.+.+.+.+.|....++
T Consensus 35 DyfVIat-g~S~rqv~Aiad~v~~~lk~~g~~~~~~ 69 (125)
T 2o5a_A 35 DFFLICH-GNSEKQVQAIAHELKKVAQEQGIEIKRL 69 (125)
T ss_dssp CEEEEEE-ESSHHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred CEEEEEE-cCCHHHHHHHHHHHHHHHHHcCCccccc
Confidence 5577776 4488999999999999998887544333
No 52
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=35.75 E-value=73 Score=19.21 Aligned_cols=55 Identities=15% Similarity=0.001 Sum_probs=35.7
Q ss_pred EEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeecccccccccccccCCeeeEEEEEEEEeecC
Q 034908 8 LLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQLIPTWEFNSG 71 (79)
Q Consensus 8 ~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~I~k~~~g~Y~~~~~~~~~~~ 71 (79)
+=++|+.++++++++++.+.++...-.| |++++ ||.-.-+ +.++=. .+...|++.
T Consensus 27 fklK~~~~~e~~~~~~~~l~~L~~~Ip~-I~~~~-vG~~~~~------~~~~d~-~l~~~F~s~ 81 (120)
T 3bde_A 27 FTLKHASHSLEEKRFLVDAKKILSAIRG-VTHFE-QLRQISP------KIDYHF-GFSMEFADQ 81 (120)
T ss_dssp EEESSCTTCHHHHHHHHHHHHHHHTSTT-CEEEE-EEECCCS------SSCCCE-EEEEEESSH
T ss_pred EEECCCCCHHHHHHHHHHHHHhhccCCc-eEEEE-EccCCCC------CCCccE-EEEEEECCH
Confidence 4467888899999999999888766665 44443 7765443 233333 556666653
No 53
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=34.96 E-value=33 Score=22.22 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=35.5
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeeccccc
Q 034908 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTV 46 (79)
Q Consensus 1 M~~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R 46 (79)
|.-.+..++.=|.-+.++-.+..++..++..++| -++-+|.||.-
T Consensus 25 M~YVDGFv~pVP~ankeaY~~~A~~a~~vfke~G-Al~~vEcWgdD 69 (141)
T 2okq_A 25 MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFG-ALRIVECWASD 69 (141)
T ss_dssp CCEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHTT-CSEEEEEEEEE
T ss_pred CceEEEEEEECcHHHHHHHHHHHHHHHHHHHHhC-Ceeeeeeeccc
Confidence 4445666666688899999999999998887766 67889999864
No 54
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.51 E-value=11 Score=22.55 Aligned_cols=21 Identities=5% Similarity=0.052 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhhhhccCCcE
Q 034908 16 KESLMELVARVGKHVYGRNGV 36 (79)
Q Consensus 16 ~e~~~~~~~~~~~~I~~~GG~ 36 (79)
+.++..++++++..|.++|-.
T Consensus 21 Ppdir~iIdktA~fVaknG~~ 41 (90)
T 2e5z_A 21 PPDVQPVIDKLAEYVARNGLK 41 (90)
T ss_dssp CTTTHHHHHHHHHHHHHSCHH
T ss_pred CHHHHHHHHHHHHHHHHccHH
Confidence 345899999999999999843
No 55
>2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P
Probab=34.40 E-value=80 Score=19.28 Aligned_cols=36 Identities=8% Similarity=0.038 Sum_probs=25.3
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhcc--CCcEEEeeec
Q 034908 7 MLLLKPHVRKESLMELVARVGKHVYG--RNGVLTDITS 42 (79)
Q Consensus 7 ~~I~~p~l~~e~~~~~~~~~~~~I~~--~GG~I~~~e~ 42 (79)
++.++++.++..+.+..+.+.....+ .||.|...-+
T Consensus 51 IV~~K~~~~~~~~~~~~~~l~~~~~~r~~g~~i~~~Y~ 88 (124)
T 2qtw_A 51 VVVLKEETHLSQSERTARRLQAQAARRGYLTKILHVFH 88 (124)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHhhcccCCceEEEec
Confidence 77788888888887777766665555 6777765543
No 56
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=34.35 E-value=30 Score=20.56 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=30.3
Q ss_pred cCCCCHHHHHHHHHHHhhhhcc--CCcEEEeeecccccccccc
Q 034908 11 KPHVRKESLMELVARVGKHVYG--RNGVLTDITSFGTVQLGYG 51 (79)
Q Consensus 11 ~p~l~~e~~~~~~~~~~~~I~~--~GG~I~~~e~wG~R~LAY~ 51 (79)
++.++..+++.+++.+.+.|.+ ..|.-+.+..||.-.+...
T Consensus 26 ~~~lsk~~~~~vl~~~~~~i~~~L~~G~~V~l~gfGtF~v~~r 68 (108)
T 2np2_A 26 NLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 (108)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEETTTEEEEEEEE
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEecCcEEEEEEEe
Confidence 3577888888888887777765 3456788899998777653
No 57
>2yfv_C SCM3, KLLA0F05115P; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140}
Probab=34.28 E-value=28 Score=19.63 Aligned_cols=11 Identities=36% Similarity=0.655 Sum_probs=8.5
Q ss_pred CCCCHHHHHHH
Q 034908 12 PHVRKESLMEL 22 (79)
Q Consensus 12 p~l~~e~~~~~ 22 (79)
|+|+++++.+.
T Consensus 16 P~lsdeevme~ 26 (63)
T 2yfv_C 16 PKLSDEEVMER 26 (63)
T ss_dssp ECCCHHHHHHH
T ss_pred CccCHHHHHHH
Confidence 88999887743
No 58
>2dt6_A Splicing factor 3 subunit 1; structure genomics, SF3A120, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=34.06 E-value=16 Score=20.05 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhhhccCCcE
Q 034908 18 SLMELVARVGKHVYGRNGV 36 (79)
Q Consensus 18 ~~~~~~~~~~~~I~~~GG~ 36 (79)
++..++++++..|.++|-.
T Consensus 2 ~i~~iI~ktA~fVarnG~~ 20 (64)
T 2dt6_A 2 EVRNIVDKTASFVARNGPE 20 (64)
T ss_dssp HHHHHHHHHHHHHHHHCTH
T ss_pred hHHHHHHHHHHHHHHcCHH
Confidence 5789999999999998843
No 59
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=33.81 E-value=48 Score=21.37 Aligned_cols=24 Identities=8% Similarity=0.051 Sum_probs=20.9
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhhh
Q 034908 6 CMLLLKPHVRKESLMELVARVGKH 29 (79)
Q Consensus 6 ~~~I~~p~l~~e~~~~~~~~~~~~ 29 (79)
++|+++++.+..|+++.++.+-++
T Consensus 82 ~vF~Vd~~AnK~qIK~AVEklf~V 105 (142)
T 3u5e_X 82 LVFQVSMKANKYQIKKAVKELYEV 105 (142)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHSC
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCC
Confidence 689999999999999999987643
No 60
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=33.57 E-value=41 Score=21.19 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=25.8
Q ss_pred eeEEEEEcCCCCHHHHHHHHHHHhhhhccCCcE
Q 034908 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGV 36 (79)
Q Consensus 4 YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~ 36 (79)
.+-++|+. ..++.+++++.+.+.+.+.+.|..
T Consensus 34 ~DyfVIaT-g~S~rqv~Aiad~v~~~lk~~g~~ 65 (130)
T 2id1_A 34 FQRMIVAT-GDSNRQVKALANSVQVKLKEAGVD 65 (130)
T ss_dssp CSEEEEEE-CSSHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCEEEEEE-cCCHHHHHHHHHHHHHHHHHcCCc
Confidence 45677887 448899999999999999887653
No 61
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=33.52 E-value=57 Score=22.78 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=29.1
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeeccc
Q 034908 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFG 44 (79)
Q Consensus 1 M~~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG 44 (79)
|..|-+.++. || ...++.++++.+.++|+-|.+++...
T Consensus 6 ~~~~vLtv~c-~D-----rpGIVa~Vs~~La~~g~NI~d~~q~~ 43 (286)
T 3n0v_A 6 PDTWILTADC-PS-----MLGTVDVVTRYLFEQRCYVTEHHSFD 43 (286)
T ss_dssp -CCEEEEEEE-EC-----CTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCcEEEEEEe-CC-----CCCHHHHHHHHHHHCCCCeeeeeeec
Confidence 3456655555 34 45789999999999999999998874
No 62
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=32.41 E-value=7.2 Score=24.21 Aligned_cols=27 Identities=7% Similarity=0.222 Sum_probs=18.1
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHhhhhc
Q 034908 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVY 31 (79)
Q Consensus 1 M~~YE~~~I~~p~l~~e~~~~~~~~~~~~I~ 31 (79)
|++||+.--+ |+|+++++.+ .+.-+|.
T Consensus 8 ~~~~etfSyL-P~lt~eqI~k---QI~Yll~ 34 (109)
T 1rbl_M 8 ERRFETFSYL-PPLSDRQIAA---QIEYMIE 34 (109)
T ss_dssp CCCCSTTTTS-SCCCHHHHHH---HHHHHHH
T ss_pred cccccccccC-CCCCHHHHHH---HHHHHHH
Confidence 5678874444 8999998765 5555544
No 63
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=32.13 E-value=33 Score=18.83 Aligned_cols=25 Identities=20% Similarity=0.126 Sum_probs=21.2
Q ss_pred HHHHHHHHhhhhccCCcEEEeeecc
Q 034908 19 LMELVARVGKHVYGRNGVLTDITSF 43 (79)
Q Consensus 19 ~~~~~~~~~~~I~~~GG~I~~~e~w 43 (79)
...++.++.++|.++|+-|.++.-.
T Consensus 15 rpGila~vt~~la~~~~NI~~i~~~ 39 (91)
T 1zpv_A 15 KSGIVAGVSGKIAELGLNIDDISQT 39 (91)
T ss_dssp CTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEeE
Confidence 4567889999999999999988763
No 64
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=32.04 E-value=52 Score=21.42 Aligned_cols=24 Identities=4% Similarity=0.090 Sum_probs=20.9
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhhh
Q 034908 6 CMLLLKPHVRKESLMELVARVGKH 29 (79)
Q Consensus 6 ~~~I~~p~l~~e~~~~~~~~~~~~ 29 (79)
++|+++++.+..|+++.++.+-++
T Consensus 90 ~vF~Vd~kAnK~qIK~AVEklf~V 113 (150)
T 4a17_R 90 MVFYVHNRSTKPQIKSAFEKLYNV 113 (150)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCC
Confidence 689999999999999999987643
No 65
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=31.96 E-value=24 Score=20.25 Aligned_cols=39 Identities=23% Similarity=0.441 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHHHhhhhcc--CCcEEEeeeccccccccc
Q 034908 12 PHVRKESLMELVARVGKHVYG--RNGVLTDITSFGTVQLGY 50 (79)
Q Consensus 12 p~l~~e~~~~~~~~~~~~I~~--~GG~I~~~e~wG~R~LAY 50 (79)
+.++..+++.+++.+.+.|.+ ..|.-+.+..||.-.+..
T Consensus 15 ~~ls~~~~~~~l~~~~~~i~~~L~~g~~V~l~gfG~F~v~~ 55 (94)
T 1owf_B 15 SHIPAKTVEDAVKEMLEHMASTLAQGERIAIRGFGSFSLHY 55 (94)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEcCcEEEEEEE
Confidence 467888888888888877765 244567889999887765
No 66
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=31.87 E-value=56 Score=21.02 Aligned_cols=27 Identities=7% Similarity=0.163 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHhhhhccCCcEEEee
Q 034908 14 VRKESLMELVARVGKHVYGRNGVLTDI 40 (79)
Q Consensus 14 l~~e~~~~~~~~~~~~I~~~GG~I~~~ 40 (79)
++++.++++++++.-.+...||.|.=+
T Consensus 4 ~~~e~v~~~L~~iRP~l~~dGGdvelv 30 (154)
T 2z51_A 4 LTEENVESVLDEIRPYLMSDGGNVALH 30 (154)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred chHHHHHHHHHHhChHHHhcCCeEEEE
Confidence 477899999999999999999977543
No 67
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: a.217.1.1
Probab=31.86 E-value=17 Score=21.32 Aligned_cols=21 Identities=5% Similarity=0.086 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhhhhccCCcE
Q 034908 16 KESLMELVARVGKHVYGRNGV 36 (79)
Q Consensus 16 ~e~~~~~~~~~~~~I~~~GG~ 36 (79)
+.++..++++++..|.++|-.
T Consensus 24 d~~~~~iIdktA~fVaknG~~ 44 (88)
T 1ug0_A 24 GAETRRVIEKLARFVAEGGPE 44 (88)
T ss_dssp GHHHHHHHHHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHHHHcCHH
Confidence 467999999999999998843
No 68
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=31.46 E-value=53 Score=23.87 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHhh
Q 034908 5 DCMLLLKPHVRKESLMELVARVGK 28 (79)
Q Consensus 5 E~~~I~~p~l~~e~~~~~~~~~~~ 28 (79)
-++++.+|+.++++++++++++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~ 35 (350)
T 1vr6_A 12 HMIVVLKPGSTEEDIRKVVKLAES 35 (350)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHh
Confidence 468899999999999999998875
No 69
>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A*
Probab=31.21 E-value=63 Score=24.29 Aligned_cols=47 Identities=9% Similarity=0.224 Sum_probs=26.4
Q ss_pred CceeEEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeeccccccccccc
Q 034908 2 PLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGI 52 (79)
Q Consensus 2 ~~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~I 52 (79)
++|=+++.+...++++++-+.++++.. .=|.+++...||-|.|==.|
T Consensus 78 ~FlN~v~~~~T~l~p~~LL~~l~~IE~----~~GR~r~~~~~gpRtiDlDI 124 (442)
T 3mcm_A 78 RFLNTAVKISSSLKPDELLVLLKDIEL----KIGRDLNAPAWSPRVIDLDI 124 (442)
T ss_dssp CEEEEEEEEEECCCHHHHHHHHHHHHH----HC-----------CCCEEEE
T ss_pred CeEEEEEEEEeCCCHHHHHHHHHHHHH----HhCCCCCCCCCCCcceeeeE
Confidence 567788899999999888776666554 45677766789999876433
No 70
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=31.19 E-value=26 Score=20.02 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHhhhhcc--CCcEEEeeecccccccccc
Q 034908 12 PHVRKESLMELVARVGKHVYG--RNGVLTDITSFGTVQLGYG 51 (79)
Q Consensus 12 p~l~~e~~~~~~~~~~~~I~~--~GG~I~~~e~wG~R~LAY~ 51 (79)
..++..+++.+++.+.+.|.+ ..|.-+.+..||.-.+...
T Consensus 14 ~~ls~~~~~~~l~~~~~~i~~~L~~g~~V~l~gfG~F~v~~r 55 (90)
T 2o97_B 14 ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKER 55 (90)
T ss_dssp TC-CHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEECC
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHCCCeEEECCCEEEEEEEe
Confidence 467788888888877777765 2455678889998877643
No 71
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=31.19 E-value=26 Score=21.91 Aligned_cols=32 Identities=6% Similarity=0.216 Sum_probs=25.3
Q ss_pred CCceeEEEEEcCCCCHHHHHHHHHHHhhhhccCCc
Q 034908 1 MPLYDCMLLLKPHVRKESLMELVARVGKHVYGRNG 35 (79)
Q Consensus 1 M~~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG 35 (79)
||..|.-.+ + -++|+.+++++.+.+.+.+.|+
T Consensus 67 MP~VeV~~f--g-Rt~EqK~~la~~IT~av~~~~~ 98 (122)
T 1u9d_A 67 YPMVEVLWF--G-REQQTQDQIAQVITDQIRQLLG 98 (122)
T ss_dssp CCEEEEEES--C-CCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEEc--C-CCHHHHHHHHHHHHHHHHHhCC
Confidence 777777666 3 4899999999999999887643
No 72
>1yz7_A Probable translation initiation factor 2 alpha subunit; helical domain, alpha-beta domain; 2.26A {Pyrococcus abyssi}
Probab=30.74 E-value=30 Score=23.04 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=25.0
Q ss_pred CceeEEEEEc-CCCCHHHHHHHHHHHhhhhccCCcEEE
Q 034908 2 PLYDCMLLLK-PHVRKESLMELVARVGKHVYGRNGVLT 38 (79)
Q Consensus 2 ~~YE~~~I~~-p~l~~e~~~~~~~~~~~~I~~~GG~I~ 38 (79)
|.|=+..... +....+.++.+++.+.+.|.++||+..
T Consensus 135 P~Y~i~~~~~Dkk~g~~~L~~aie~i~~~I~~~gG~~~ 172 (188)
T 1yz7_A 135 PRYRIDITAPDYYKAEEVLESIAEEILRVIKEAGGEAT 172 (188)
T ss_dssp TEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred cEEEEEEeeCCHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 4555544442 122355678888889999999999875
No 73
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=30.21 E-value=25 Score=20.01 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHhhhhcc--CCcEEEeeeccccccccc
Q 034908 12 PHVRKESLMELVARVGKHVYG--RNGVLTDITSFGTVQLGY 50 (79)
Q Consensus 12 p~l~~e~~~~~~~~~~~~I~~--~GG~I~~~e~wG~R~LAY 50 (79)
..++..+++.+++.+.+.|.+ ..|.-+.+..||.-.+..
T Consensus 14 ~~ls~~~~~~~l~~~~~~i~~~L~~g~~V~l~gfG~F~v~~ 54 (90)
T 1mul_A 14 AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNH 54 (90)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEE
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEcCCeEEEEEE
Confidence 467788888888777777665 244567888999887764
No 74
>1f9y_A HPPK, protein (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase); pyrophosphoryl transfer, catalytic mechanism, folate, ternary complex; HET: APC HHR; 0.89A {Escherichia coli} PDB: 1eq0_A 1dy3_A* 1ex8_A* 1eqm_A* 1hka_A 1q0n_A* 1rao_A* 1rb0_A* 2f63_A 2f65_A 3h4a_A* 3ip0_A* 3ud5_A* 3ude_A* 3udv_A* 4f7v_A* 3kue_A 3hd2_A* 1f9h_A* 1g4c_A ...
Probab=30.07 E-value=58 Score=21.03 Aligned_cols=45 Identities=16% Similarity=0.317 Sum_probs=32.4
Q ss_pred ceeEEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeecccccccccc
Q 034908 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYG 51 (79)
Q Consensus 3 ~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~ 51 (79)
++=+++.+...+++.++-+.++.+... =|.++.-..||-|.|==.
T Consensus 53 FlN~v~~~~T~l~p~~LL~~l~~IE~~----~GR~r~~~~~gpRtlDlD 97 (158)
T 1f9y_A 53 YLNAAVALETSLAPEELLNHTQRIELQ----QGRVRKAERWGPRTLDLD 97 (158)
T ss_dssp EEEEEEEEEECSCHHHHHHHHHHHHHH----TTCCCCSSTTCCCSCEEE
T ss_pred ceEEEEEEEeCCCHHHHHHHHHHHHHH----hCCCCCCCCCCCceEeEE
Confidence 456788888899999887777666554 456666468999987533
No 75
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=30.05 E-value=58 Score=21.29 Aligned_cols=24 Identities=8% Similarity=0.195 Sum_probs=20.9
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhhh
Q 034908 6 CMLLLKPHVRKESLMELVARVGKH 29 (79)
Q Consensus 6 ~~~I~~p~l~~e~~~~~~~~~~~~ 29 (79)
.+|+++++.+..|+++.++.+-++
T Consensus 96 yvF~Vd~~AnK~qIK~AVEklf~V 119 (156)
T 2zkr_s 96 LVFIVDVKANKHQIKQAVKKLYDI 119 (156)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCC
T ss_pred EEEEEECCCCHHHHHHHHHHHhCC
Confidence 689999999999999999887643
No 76
>2cg8_A Dihydroneopterin aldolase 6-hydroxymethyl-7,8- dihydropterin synthase; lyase/transferase, folate biosynthesis, pyrophosphokinase, lyase; 2.9A {Streptococcus pneumoniae}
Probab=29.99 E-value=64 Score=22.41 Aligned_cols=42 Identities=10% Similarity=0.259 Sum_probs=22.9
Q ss_pred ceeEEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeecccccccc
Q 034908 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLG 49 (79)
Q Consensus 3 ~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LA 49 (79)
++=+++.++..+++.++-+.++++.. .-|.++. ..||-|.|=
T Consensus 171 f~N~v~~~~t~l~p~~ll~~l~~iE~----~~GR~r~-~~~gpRtlD 212 (270)
T 2cg8_A 171 FANQVVEVETWLPAQDLLETLLAIES----ELGRVRE-VHWGPRLID 212 (270)
T ss_dssp CEEEEEEEEECSCHHHHHHHHHHHHH----HTTC-----------CE
T ss_pred ceEEEEEEecCCCHHHHHHHHHHHHH----HcCCCCC-CCCCCccee
Confidence 45677888889999988777666554 4456666 579999875
No 77
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=29.71 E-value=30 Score=25.59 Aligned_cols=26 Identities=0% Similarity=-0.106 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHhhhhcc-CCcEEE
Q 034908 13 HVRKESLMELVARVGKHVYG-RNGVLT 38 (79)
Q Consensus 13 ~l~~e~~~~~~~~~~~~I~~-~GG~I~ 38 (79)
.|++++++++.+++.+.+.+ .|+++|
T Consensus 388 TLtd~ev~~~~~~i~~~l~~~~ga~LR 414 (415)
T 3cmq_A 388 TLSQREVRHIHQALQEAAVQLLGVEGR 414 (415)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHSCCEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCEeC
Confidence 78999999999999999976 588876
No 78
>3j21_P 50S ribosomal protein L18E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.54 E-value=18 Score=22.45 Aligned_cols=23 Identities=9% Similarity=0.089 Sum_probs=18.1
Q ss_pred HHHhhhhccCCcEEEeeeccccc
Q 034908 24 ARVGKHVYGRNGVLTDITSFGTV 46 (79)
Q Consensus 24 ~~~~~~I~~~GG~I~~~e~wG~R 46 (79)
+...+.|+..||.+.-++..+.+
T Consensus 87 ~~A~ekIe~AGG~v~~~~qL~~~ 109 (120)
T 3j21_P 87 ETARRKIIEAGGEAITIEELIER 109 (120)
T ss_dssp HHHHHHHTTTSSCEEESTTHHHH
T ss_pred HHHHHHHHHcCCEEEEeHHHHHH
Confidence 45667789999999988877654
No 79
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=29.18 E-value=86 Score=18.05 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=35.2
Q ss_pred EcCCCCHHHHHHHHHHHhhhhccCCcEEEeeecccccccccccccCCeeeEEEEEEEEeecC
Q 034908 10 LKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQLIPTWEFNSG 71 (79)
Q Consensus 10 ~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~I~k~~~g~Y~~~~~~~~~~~ 71 (79)
++++.++++++++.+.+.++-..-.| |+++ .||.-.-+- -....+|+=+ .+...|++.
T Consensus 17 lk~~~~~~~~~~~~~~l~~L~~~ip~-i~~~-~~G~~~~~~-~~~~~~~~d~-~l~~~F~s~ 74 (108)
T 1tr0_A 17 FKDEITREQIDNYINDYTNLLDLIPS-MKSF-NWGTDLGME-SAELNRGYTH-AFESTFESK 74 (108)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHCTT-CCEE-EEEECCSCS-CTTTTTTCCE-EEEEEESSH
T ss_pred ECCCCCHHHHHHHHHHHHHHhhcCCc-eEEE-EEccCCCcc-ccccCCCccE-EEEEEECCH
Confidence 56888999999998888777655554 3444 367543221 0033456655 566777654
No 80
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=28.85 E-value=27 Score=17.80 Aligned_cols=17 Identities=12% Similarity=0.286 Sum_probs=14.4
Q ss_pred cCCCCHHHHHHHHHHHh
Q 034908 11 KPHVRKESLMELVARVG 27 (79)
Q Consensus 11 ~p~l~~e~~~~~~~~~~ 27 (79)
.|.|++++....++.+.
T Consensus 20 ~~nLtEeQrn~yI~slk 36 (38)
T 1zda_A 20 DPNLNEEQRNAKIKSIR 36 (38)
T ss_dssp CSSSCTTHHHHHHHHHS
T ss_pred CCCCCHHHHHhHHHHhh
Confidence 38999999999888765
No 81
>1x0p_A Hypothetical protein TLL0078; BLUF, FAD, structural genomics, electron transport; HET: FAD; 2.00A {Thermosynechococcus elongatus} SCOP: d.58.10.2
Probab=28.57 E-value=86 Score=19.64 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=23.1
Q ss_pred CCceeEEEEEc--CCCCHHHHHHHHHHHhhhh
Q 034908 1 MPLYDCMLLLK--PHVRKESLMELVARVGKHV 30 (79)
Q Consensus 1 M~~YE~~~I~~--p~l~~e~~~~~~~~~~~~I 30 (79)
|+++.++|+-+ +.+++++++++++.....=
T Consensus 1 M~L~~l~Y~S~~~~~~~~~~l~~Il~~a~~~N 32 (143)
T 1x0p_A 1 MGLHRLIYLSCATDGLSYPDLRDIMAKSEVNN 32 (143)
T ss_dssp -CEEEEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CccEEEEEEEeeCCCCCHHHHHHHHHHHHHhh
Confidence 88999999977 5677899999988766543
No 82
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=28.48 E-value=56 Score=21.31 Aligned_cols=24 Identities=8% Similarity=0.163 Sum_probs=20.9
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhhh
Q 034908 6 CMLLLKPHVRKESLMELVARVGKH 29 (79)
Q Consensus 6 ~~~I~~p~l~~e~~~~~~~~~~~~ 29 (79)
++|+++++.+..|+++.++.+-++
T Consensus 92 ~vF~Vd~~AnK~qIK~AVEklf~V 115 (152)
T 3iz5_X 92 LVFIVDLKADKKKIKAAVKKMYDI 115 (152)
T ss_dssp EEEEECSSCCSHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCC
Confidence 589999999999999999887643
No 83
>3ddc_B RAS association domain-containing family protein; oncogene, tumorsuppressor, ubiquitin fold, RAS effector, RAP rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A {Mus musculus}
Probab=28.38 E-value=1.1e+02 Score=20.06 Aligned_cols=42 Identities=7% Similarity=-0.002 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHHhhhhccCCcEEEeeecccccccccccccCCeeeEEEEEEEEee
Q 034908 12 PHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQLIPTWEFN 69 (79)
Q Consensus 12 p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~I~k~~~g~Y~~~~~~~~~ 69 (79)
+.++.+|+++-++++...+.++ ..+.-+.+|.|.|++.++++
T Consensus 5 ~~ls~~ei~~kI~~YN~~~~~~----------------l~M~l~~dgsytGFIkV~l~ 46 (163)
T 3ddc_B 5 FPPTIQEIKQKIDSYNSREKHC----------------LGMKLSEDGTYTGFIKVHLK 46 (163)
T ss_dssp -CCCHHHHHHHHHHHHHTSCGG----------------GSCEECGGGCEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhcccC----------------ceEEECCCCcccceEEEEEE
Confidence 5788999999999998887432 12333567788886666654
No 84
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=28.06 E-value=23 Score=20.14 Aligned_cols=40 Identities=13% Similarity=0.272 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHHhhhhcc--CCcEEEeeecccccccccc
Q 034908 12 PHVRKESLMELVARVGKHVYG--RNGVLTDITSFGTVQLGYG 51 (79)
Q Consensus 12 p~l~~e~~~~~~~~~~~~I~~--~GG~I~~~e~wG~R~LAY~ 51 (79)
..++..+++.+++.+.+.|.+ ..|.-+.+..||.-.+...
T Consensus 14 ~~ls~~~~~~~l~~~~~~i~~~L~~g~~V~l~gfG~F~v~~r 55 (90)
T 1b8z_A 14 AGAKKKDVKLILDTILETITEALAKGEKVQIVGFGSFEVRKA 55 (90)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEC---
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHhCCCEEEECCCEEEEEEEE
Confidence 356777888887777777665 2445678899998877643
No 85
>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A
Probab=27.72 E-value=17 Score=25.21 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=25.5
Q ss_pred EEEEcCCCCHHHHHHH-HHHHhhhhccCCcEE
Q 034908 7 MLLLKPHVRKESLMEL-VARVGKHVYGRNGVL 37 (79)
Q Consensus 7 ~~I~~p~l~~e~~~~~-~~~~~~~I~~~GG~I 37 (79)
.+++.+++++.++..+ .+++..+|++.||.-
T Consensus 156 ~ILVa~~l~Ps~~~~l~~~~~~givt~~Gg~t 187 (258)
T 1zym_A 156 VILVAADLTPSETAQLNLKKVLGFITDAGGRT 187 (258)
T ss_dssp EEEECSCCCHHHHHHSCGGGEEEEECSCCCSS
T ss_pred eEEEECCCCHHHHHhhchhhcEEEEEcCCCcc
Confidence 4566779999999887 478999999999853
No 86
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=26.70 E-value=41 Score=21.31 Aligned_cols=32 Identities=9% Similarity=-0.021 Sum_probs=25.7
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEE
Q 034908 6 CMLLLKPHVRKESLMELVARVGKHVYGRNGVLT 38 (79)
Q Consensus 6 ~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~ 38 (79)
.+|+..|..+..+....++++.+.+.++| +|.
T Consensus 13 kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~ 44 (165)
T 2khz_A 13 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVL 44 (165)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHHHHHHS-EES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHHhcC-Ccc
Confidence 48899999876666656799999999988 774
No 87
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=26.56 E-value=28 Score=18.80 Aligned_cols=37 Identities=5% Similarity=-0.014 Sum_probs=25.4
Q ss_pred CCceeEEEEEc-CCCCHHHHHHHHHHHhhhhccCCcEEEeeec
Q 034908 1 MPLYDCMLLLK-PHVRKESLMELVARVGKHVYGRNGVLTDITS 42 (79)
Q Consensus 1 M~~YE~~~I~~-p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~ 42 (79)
|..|-..+.+. ++ ...++.++.+++.+.|+.|.++..
T Consensus 1 ~~~~~~~l~v~~~D-----r~G~L~~I~~~la~~~inI~~i~~ 38 (88)
T 2ko1_A 1 MTDFLAGIRIVGED-----KNGMTNQITGVISKFDTNIRTIVL 38 (88)
T ss_dssp CCCEEEEEEEEEEC-----CTTHHHHHHHHHTTSSSCEEEEEE
T ss_pred CCcEEEEEEEEEEC-----CCcHHHHHHHHHHHCCCCeEEEEE
Confidence 44555544332 22 346678899999999999988776
No 88
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=26.31 E-value=1.2e+02 Score=18.76 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=29.1
Q ss_pred ceeEEEEEcC--CCCHHHHHHHHHHHhhhhccCCcEEEeeec
Q 034908 3 LYDCMLLLKP--HVRKESLMELVARVGKHVYGRNGVLTDITS 42 (79)
Q Consensus 3 ~YE~~~I~~p--~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~ 42 (79)
.|++++.... .++++++.++++.+...+.. ||.+..+.+
T Consensus 102 ~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~~i~~~~ 142 (219)
T 3jwg_A 102 GYDAATVIEVIEHLDENRLQAFEKVLFEFTRP-QTVIVSTPN 142 (219)
T ss_dssp TCSEEEEESCGGGCCHHHHHHHHHHHHTTTCC-SEEEEEEEB
T ss_pred CCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCC-CEEEEEccc
Confidence 4677776542 45777889999999998765 788887765
No 89
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=26.23 E-value=1.1e+02 Score=18.93 Aligned_cols=35 Identities=14% Similarity=0.337 Sum_probs=27.5
Q ss_pred ceeEEEEEcC--CCCHHHHHHHHHHHhhhhccCCcEEE
Q 034908 3 LYDCMLLLKP--HVRKESLMELVARVGKHVYGRNGVLT 38 (79)
Q Consensus 3 ~YE~~~I~~p--~l~~e~~~~~~~~~~~~I~~~GG~I~ 38 (79)
.|.+++...+ ....++..++++.+...+.. ||.+.
T Consensus 103 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~-gG~l~ 139 (227)
T 1ve3_A 103 TFDYVIFIDSIVHFEPLELNQVFKEVRRVLKP-SGKFI 139 (227)
T ss_dssp CEEEEEEESCGGGCCHHHHHHHHHHHHHHEEE-EEEEE
T ss_pred cEEEEEEcCchHhCCHHHHHHHHHHHHHHcCC-CcEEE
Confidence 5888888877 66777889999999998766 56553
No 90
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.60A {Ruegeria pomeroyi}
Probab=26.22 E-value=80 Score=19.73 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=19.4
Q ss_pred CCHHHHHHHHH---H-HhhhhccCCcEEEeee
Q 034908 14 VRKESLMELVA---R-VGKHVYGRNGVLTDIT 41 (79)
Q Consensus 14 l~~e~~~~~~~---~-~~~~I~~~GG~I~~~e 41 (79)
++++.+..+.+ . +..+|.++||.+.+..
T Consensus 25 ~~~~~~~~l~~~~~~~~~~~i~~~~G~v~k~~ 56 (189)
T 3mr7_A 25 NETDVLNRQKLYRRELIDPAIAQAGGQIVKTT 56 (189)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 45566655544 3 5668999999998764
No 91
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=25.55 E-value=4.1 Score=18.94 Aligned_cols=17 Identities=35% Similarity=0.741 Sum_probs=12.7
Q ss_pred ecccccccccccccCCe
Q 034908 41 TSFGTVQLGYGIKKLDG 57 (79)
Q Consensus 41 e~wG~R~LAY~I~k~~~ 57 (79)
..+|++.+.|.++|.+.
T Consensus 8 kkfgrkaisyavkkarg 24 (26)
T 2g9p_A 8 KKFGRKAISYAVKKARG 24 (26)
T ss_dssp HHHTSHHHHHHHHHTTC
T ss_pred HHHhHHHHHHHHHHHcc
Confidence 45788888888887653
No 92
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB: 3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Probab=25.42 E-value=1.1e+02 Score=21.60 Aligned_cols=43 Identities=9% Similarity=0.190 Sum_probs=33.3
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeeccccccccc
Q 034908 5 DCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGY 50 (79)
Q Consensus 5 E~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY 50 (79)
++.-|-++++++++...+.+++.+.+.+..|.|.- .|.-.|+|
T Consensus 52 ~~~~idS~~mt~~~w~~la~~I~~~~~~~dG~VIt---HGTDTmee 94 (326)
T 1nns_A 52 QVVNIGSQDMNDNVWLTLAKKINTDCDKTDGFVIT---HGTDTMEE 94 (326)
T ss_dssp EEEEECGGGCCHHHHHHHHHHHHHHGGGCSEEEEE---CCSSSHHH
T ss_pred EeccCCcccCCHHHHHHHHHHHHHHhhcCCcEEEE---cCchhHHH
Confidence 45556778999999999999999998876677653 46666655
No 93
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=25.34 E-value=40 Score=20.97 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=16.0
Q ss_pred EEEEcCCCCHHHHHHHHHHH
Q 034908 7 MLLLKPHVRKESLMELVARV 26 (79)
Q Consensus 7 ~~I~~p~l~~e~~~~~~~~~ 26 (79)
+.+++..|+++|++++...+
T Consensus 34 LALL~R~LtdeEV~~Va~~L 53 (112)
T 2m0n_A 34 LALLRRTLTEEQVQEVVAKL 53 (112)
T ss_dssp GGCCCSSCCHHHHHHHHHHH
T ss_pred HHHhhccCCHHHHHHHHHHH
Confidence 44678899999999887665
No 94
>2c21_A Trypanothione-dependent glyoxalase I; lyase, glutathionylspermidine, methylglyoxal, detoxification; 2.0A {Leishmania major} SCOP: d.32.1.1
Probab=24.99 E-value=36 Score=19.75 Aligned_cols=33 Identities=6% Similarity=0.041 Sum_probs=20.0
Q ss_pred HHhhhhccCCcEEEeeecccccccccccccCCeeeEE
Q 034908 25 RVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQ 61 (79)
Q Consensus 25 ~~~~~I~~~GG~I~~~e~wG~R~LAY~I~k~~~g~Y~ 61 (79)
.+.+.+.++|+.+... ||.+.++|--+- +|+-.
T Consensus 90 ~~~~~l~~~G~~~~~~--~g~~~~~~~~DP--dG~~i 122 (144)
T 2c21_A 90 ELVADMRKHDVPIDYE--DESGFMAFVVDP--DGYYI 122 (144)
T ss_dssp HHHHHHHHTTCCEEEE--CSSSSEEEEECT--TSCEE
T ss_pred HHHHHHHHCCCEEecc--CCcEEEEEEECC--CCCEE
Confidence 3344455678888776 888777664332 35544
No 95
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=24.94 E-value=27 Score=19.88 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHhhhhccCC-cEE--Eeee
Q 034908 14 VRKESLMELVARVGKHVYGRN-GVL--TDIT 41 (79)
Q Consensus 14 l~~e~~~~~~~~~~~~I~~~G-G~I--~~~e 41 (79)
+..+.++++++++.-.+...| |.| ++++
T Consensus 4 ~~~~~V~~~L~~iRP~L~~dGGGdvelv~v~ 34 (74)
T 1th5_A 4 LNEENVEKVLNEIRPYLAGTGGGGLQFLMIK 34 (74)
T ss_dssp CSHHHHHHHHTTTHHHHTTTTCCCCCCCEEE
T ss_pred HHHHHHHHHHHHHhHHHHhcCCCcEEEEEEe
Confidence 467889999999999999999 744 4444
No 96
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=24.79 E-value=28 Score=25.54 Aligned_cols=32 Identities=6% Similarity=-0.073 Sum_probs=27.7
Q ss_pred eeEEEEEcCCCCHHHHHHHHHHHhhhhccCCc
Q 034908 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNG 35 (79)
Q Consensus 4 YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG 35 (79)
=|++.+.+|+-+.++++++++...+++.+.|=
T Consensus 195 vE~v~~~tpEqs~~e~e~l~~~ae~il~~LgL 226 (346)
T 3mf2_A 195 REYVCIGTPDDVSDFRERWMVRAQAIARDLGL 226 (346)
T ss_dssp EEEEEEESHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEEeCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 48999999998889999999999999887663
No 97
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=24.75 E-value=77 Score=19.23 Aligned_cols=32 Identities=6% Similarity=0.053 Sum_probs=21.7
Q ss_pred cCCCCHHHHHHHHHHHhhhh---ccCCcEEEeeec
Q 034908 11 KPHVRKESLMELVARVGKHV---YGRNGVLTDITS 42 (79)
Q Consensus 11 ~p~l~~e~~~~~~~~~~~~I---~~~GG~I~~~e~ 42 (79)
.++.+++++.+++.++..+. ...+..|.++..
T Consensus 13 p~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~ 47 (198)
T 2yh0_A 13 PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI 47 (198)
T ss_dssp CTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe
Confidence 47889999999999986432 233445666544
No 98
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=24.72 E-value=44 Score=23.14 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=25.1
Q ss_pred CceeEEEEEc-CCCCHHHHHHHHHHHhhhhccCCcEEE
Q 034908 2 PLYDCMLLLK-PHVRKESLMELVARVGKHVYGRNGVLT 38 (79)
Q Consensus 2 ~~YE~~~I~~-p~l~~e~~~~~~~~~~~~I~~~GG~I~ 38 (79)
|.|=+..... +....+.++++++.+.+.|.++||+..
T Consensus 225 P~Y~i~~~~~d~k~~~~~l~~~~~~~~~~i~~~~g~~~ 262 (266)
T 3cw2_C 225 PRYRVDVVGTNPKEASEALNQIISNLIKIGKEENVDIS 262 (266)
T ss_dssp SEEEEEEEESCHHHHHHHHHHHHHHHHHHHTTTTCCEE
T ss_pred CEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 4555555442 222356678888888999999999764
No 99
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=24.69 E-value=85 Score=19.18 Aligned_cols=31 Identities=3% Similarity=0.021 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHhhhhccCCcEEEeeec
Q 034908 12 PHVRKESLMELVARVGKHVYGRNGVLTDITS 42 (79)
Q Consensus 12 p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~ 42 (79)
+-|+++..+.++++...-|.+.|+.+...+.
T Consensus 54 ~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~ 84 (112)
T 1j26_A 54 DWIEEPVRQKIALTHKNKINKAGELVLTSES 84 (112)
T ss_dssp TTSCHHHHHHHHHHTTTTBCSSSEEEEEECC
T ss_pred ccCCHHHHHHHHHhhccccccCCeEEEEECC
Confidence 5688999999999999999998888876654
No 100
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase, lyase; 2.31A {Synechocystis SP}
Probab=24.55 E-value=56 Score=20.90 Aligned_cols=28 Identities=7% Similarity=0.366 Sum_probs=19.8
Q ss_pred CCHHHHHHHH----HHHhhhhccCCcEEEeee
Q 034908 14 VRKESLMELV----ARVGKHVYGRNGVLTDIT 41 (79)
Q Consensus 14 l~~e~~~~~~----~~~~~~I~~~GG~I~~~e 41 (79)
++++++..++ +.+.++|.++||.|.+..
T Consensus 32 ~~~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~ 63 (208)
T 2w01_A 32 LNPEEVVKVLNIYFGKMADVITHHGGTIDEFM 63 (208)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 4566655544 556778899999998763
No 101
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=24.40 E-value=1.2e+02 Score=17.98 Aligned_cols=40 Identities=20% Similarity=0.388 Sum_probs=28.3
Q ss_pred ceeEEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeecccccc
Q 034908 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQ 47 (79)
Q Consensus 3 ~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~ 47 (79)
.+++..|++|.. -+++.+.+.+.. -.|.++.++.-.|+.+
T Consensus 5 Mk~I~aIIr~~~-~~~v~~AL~~~G----~~g~Tv~~v~G~G~~~ 44 (116)
T 2ns1_B 5 MKLVTVIIKPFK-LEDVREALSSIG----IQGLTVTEVKGFGRQK 44 (116)
T ss_dssp EEEEEEEECGGG-HHHHHHHHHHTT----CCCCEEEEEEECSSSC
T ss_pred eEEEEEEECHHH-HHHHHHHHHHCC----CCeEEEEeeEeEcCcC
Confidence 578899999874 344555555543 2688999988888755
No 102
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=24.19 E-value=83 Score=18.61 Aligned_cols=33 Identities=6% Similarity=0.080 Sum_probs=21.3
Q ss_pred EcCCCCHHHHHHHHHHHhhhh---ccCCcEEEeeec
Q 034908 10 LKPHVRKESLMELVARVGKHV---YGRNGVLTDITS 42 (79)
Q Consensus 10 ~~p~l~~e~~~~~~~~~~~~I---~~~GG~I~~~e~ 42 (79)
+.++.+++++.++++++..+. ...+..|.++..
T Consensus 12 Lp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~ 47 (172)
T 2g4b_A 12 IPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI 47 (172)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE
T ss_pred CCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe
Confidence 347889999999999986432 223335555543
No 103
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=24.17 E-value=1.7e+02 Score=22.55 Aligned_cols=51 Identities=20% Similarity=0.284 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHhhhhccCCcEEEeeecccccccccccccCCeeeEEEEEEEEeecCc
Q 034908 13 HVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQLIPTWEFNSGS 72 (79)
Q Consensus 13 ~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~I~k~~~g~Y~~~~~~~~~~~~ 72 (79)
++.++++.+++.++...+.+.|..|.+....- +.+ ..-+||+ + .+++...+
T Consensus 441 ~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~------d~~-~~p~hyv-~-~wE~~~~~ 491 (581)
T 4epl_A 441 KNTERDLQLSVESAAKRLSEEKIEVIDFSSYI------DVS-TDPGHYA-I-FWEISGET 491 (581)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEE------ECS-SSSCEEE-E-EEEESSCC
T ss_pred ECCHHHHHHHHHHHHHhhcccCCeEEEEEEec------CCC-CCCCcEE-E-EEeecCCC
Confidence 47899999999999998888898888876411 222 3348998 3 35775443
No 104
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=24.02 E-value=1.5e+02 Score=21.78 Aligned_cols=50 Identities=18% Similarity=0.171 Sum_probs=32.1
Q ss_pred eEEEEEcCC-CCHHHHHHHHHHHhhhhccCCcEEEeeec---ccccccccccccC
Q 034908 5 DCMLLLKPH-VRKESLMELVARVGKHVYGRNGVLTDITS---FGTVQLGYGIKKL 55 (79)
Q Consensus 5 E~~~I~~p~-l~~e~~~~~~~~~~~~I~~~GG~I~~~e~---wG~R~LAY~I~k~ 55 (79)
.+.+++..+ .+.+++.+++.....-+.+ .-.+-++-. =|+|.|||.+.-+
T Consensus 330 Dla~~v~~~~v~~~~i~~~ir~~~~~lle-~v~lfDvy~g~~~gkkSla~rl~~r 383 (415)
T 3cmq_A 330 DISFWLPSENYAENDFYDLVRTIGGDLVE-KVDLIDKFVHPKTHKTSHCYRITYR 383 (415)
T ss_dssp EEEEECCTTCCCHHHHHHHHHHHHGGGEE-EEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred eEEEEEcCCCccHHHHHHHHHHhCCCceE-EEEEEEEEeCCCCCcEEEEEEEEEE
Confidence 578899888 9999999998887654433 122222221 3677777766543
No 105
>2ljp_A Ribonuclease P protein component; rnasep, ribozyme, hydrolase; NMR {Escherichia coli}
Probab=23.79 E-value=37 Score=20.44 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=16.7
Q ss_pred CceeEEEEEcCCCCHHHHHHHHHHHhhh
Q 034908 2 PLYDCMLLLKPHVRKESLMELVARVGKH 29 (79)
Q Consensus 2 ~~YE~~~I~~p~l~~e~~~~~~~~~~~~ 29 (79)
+-|.+++|++|...+..-+++.+.+..+
T Consensus 81 ~~~d~Vviar~~~~~~~~~~l~~~l~~l 108 (119)
T 2ljp_A 81 PAMDFVVVAKKGVADLDNRALSEALEKL 108 (119)
T ss_dssp CSSEECEEECTTGGGSCHHHHHHHHHHH
T ss_pred CCceEEEEEcCCcccCCHHHHHHHHHHH
Confidence 4588999999875443344444444443
No 106
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=23.64 E-value=43 Score=21.24 Aligned_cols=36 Identities=11% Similarity=0.294 Sum_probs=27.0
Q ss_pred eeEEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEee
Q 034908 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDI 40 (79)
Q Consensus 4 YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~ 40 (79)
-+.++|+. ..+..++.++.+.+.+.+.+.|.....+
T Consensus 50 ~DyfVIat-g~S~rqv~Aiad~v~~~lk~~g~~~~~~ 85 (136)
T 3ups_A 50 ADYMVIAS-GRSSRQVTAMAQKLADRIKAATGYVSKI 85 (136)
T ss_dssp CSEEEEEE-CSSHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_pred cCEEEEEE-cCCHHHHHHHHHHHHHHHHHcCCccCcc
Confidence 35677777 4488999999999999988776544333
No 107
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=23.58 E-value=50 Score=16.03 Aligned_cols=25 Identities=8% Similarity=0.058 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHhhhhccCCcEE
Q 034908 13 HVRKESLMELVARVGKHVYGRNGVL 37 (79)
Q Consensus 13 ~l~~e~~~~~~~~~~~~I~~~GG~I 37 (79)
....+..+..++|+..+..+-||..
T Consensus 4 g~~~daFadA~~RaRQIaAKig~~~ 28 (31)
T 2kxh_B 4 GYVNDAFKDALQRARQIAAKIGGDA 28 (31)
T ss_dssp SSCSSHHHHHHHHHHHHHHHTTCCC
T ss_pred CcchHHHHHHHHHHHHHHHHhcCCC
Confidence 3445778899999999998888753
No 108
>3i84_A Cervical EMMPRIN; CD147, dimerization, cell adhesion, beta-strand swapping; 2.00A {Homo sapiens} PDB: 3i85_A
Probab=23.56 E-value=85 Score=18.60 Aligned_cols=39 Identities=10% Similarity=0.116 Sum_probs=23.8
Q ss_pred CCcEEEeeecccccccccccc-cCCeeeEEEEEEEEeecCcccc
Q 034908 33 RNGVLTDITSFGTVQLGYGIK-KLDGRYYQLIPTWEFNSGSIFE 75 (79)
Q Consensus 33 ~GG~I~~~e~wG~R~LAY~I~-k~~~g~Y~~~~~~~~~~~~~~e 75 (79)
.||++...+.--.+.--|.|+ ..+.|-|. .+ |.++|+..
T Consensus 45 kng~~L~~~~~~~~~t~y~Id~~~dSGeY~-Cv---f~~eP~~~ 84 (98)
T 3i84_A 45 KGGVVLKEDALPGQKTEFKVDSDDQWGEYS-CV---FLPEPMGT 84 (98)
T ss_dssp ETTEEEEEECCCCSEEEEEECGGGCCEEEE-EE---EEECCSEE
T ss_pred ECCEECccccCCCCccEEEEeccccCEeEE-EE---ECCCCcee
Confidence 356666666433344568884 46789998 54 45656543
No 109
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=23.52 E-value=69 Score=20.10 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHHhhhhccCCcE
Q 034908 13 HVRKESLMELVARVGKHVYGRNGV 36 (79)
Q Consensus 13 ~l~~e~~~~~~~~~~~~I~~~GG~ 36 (79)
..++++++++.+++.+.+.+.|+-
T Consensus 116 ~~~~eel~~~a~kIr~~L~~~~~~ 139 (149)
T 3i24_A 116 IRAQSSQTQLVDLLRDKLSNISGF 139 (149)
T ss_dssp BCCHHHHHHHHHHHHHHHTTSTTC
T ss_pred CCCHHHHHHHHHHHHHHHHhccch
Confidence 457899999999999999887764
No 110
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=23.26 E-value=36 Score=20.97 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=16.3
Q ss_pred EEEcCCCCHHHHHHHHHHHhh
Q 034908 8 LLLKPHVRKESLMELVARVGK 28 (79)
Q Consensus 8 ~I~~p~l~~e~~~~~~~~~~~ 28 (79)
.++++.|+++|++++...+..
T Consensus 38 ALL~R~Ltddev~~Va~~L~~ 58 (107)
T 3ol3_A 38 ALLKRSLTEDEVVRAAQAILR 58 (107)
T ss_dssp HHHTCCCCHHHHHHHHHHHHH
T ss_pred HHhcccCCHHHHHHHHHHHHh
Confidence 356788999999988876644
No 111
>2qx0_A 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase; 3-layered alpha-BATA-alpha fold, homodimer, ternary complex, transferase; HET: APC PH2; 1.80A {Yersinia pestis}
Probab=23.25 E-value=1.2e+02 Score=19.54 Aligned_cols=45 Identities=11% Similarity=0.243 Sum_probs=31.5
Q ss_pred ceeEEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeecccccccccc
Q 034908 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYG 51 (79)
Q Consensus 3 ~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~ 51 (79)
++=+++.+...+++.++-+.++++....- .++.-..||-|.|==.
T Consensus 54 FlN~v~~~~T~l~p~~LL~~l~~IE~~~G----R~r~~~r~gpRtlDlD 98 (159)
T 2qx0_A 54 FLNAVVALDTSLPPEQLLDHTQAIERNQG----RVRKEQRWGPRTLDLD 98 (159)
T ss_dssp EEEEEEEEEECSCHHHHHHHHHHHHHHHH----HTTTCBTTSCCSCEEE
T ss_pred cceEEEEEeeCCCHHHHHHHHHHHHHHcC----CCCCCCCCCCceeEEe
Confidence 45677888899999988887777766543 3343247998887533
No 112
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa} SCOP: d.58.29.0
Probab=23.08 E-value=46 Score=20.92 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=20.8
Q ss_pred CCCHHHHHH----HHHHHhhhhccCCcEEEeee
Q 034908 13 HVRKESLME----LVARVGKHVYGRNGVLTDIT 41 (79)
Q Consensus 13 ~l~~e~~~~----~~~~~~~~I~~~GG~I~~~e 41 (79)
.++++++.. ..+.+.++|.++||.|.++.
T Consensus 26 ~~~~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~ 58 (198)
T 3r5g_A 26 ELEAEALTDLLNNYLNEMSKIALKYGGTIDKFV 58 (198)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeee
Confidence 446666554 55567788889999998874
No 113
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=22.97 E-value=37 Score=18.66 Aligned_cols=16 Identities=6% Similarity=0.110 Sum_probs=12.4
Q ss_pred HHHhhhhccCCcEEEe
Q 034908 24 ARVGKHVYGRNGVLTD 39 (79)
Q Consensus 24 ~~~~~~I~~~GG~I~~ 39 (79)
+.+.++|..+||.+..
T Consensus 24 ~~l~~~i~~~GG~~~~ 39 (92)
T 4id3_A 24 LQLHEMIVLHGGKFLH 39 (92)
T ss_dssp HHHHHHHHHTTCEEES
T ss_pred HHHHHHHHHCCCEEEE
Confidence 3567788889999875
No 114
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Probab=22.94 E-value=62 Score=21.00 Aligned_cols=28 Identities=14% Similarity=0.443 Sum_probs=19.8
Q ss_pred CCCHHHHHHHH----HHHhhhhccCCcEEEee
Q 034908 13 HVRKESLMELV----ARVGKHVYGRNGVLTDI 40 (79)
Q Consensus 13 ~l~~e~~~~~~----~~~~~~I~~~GG~I~~~ 40 (79)
.++++++..++ +.+.++|.++||.|.+.
T Consensus 44 ~~~~~~~~~~Ln~~~~~~~~~i~~~gG~v~k~ 75 (219)
T 1wc3_A 44 ALQSQGVAELLNEYLGEMTRAVFENQGTVDKF 75 (219)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 34566655544 55677889999999875
No 115
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=22.75 E-value=44 Score=19.16 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHHHhhhhcc--CCcEEEeeeccccccccc
Q 034908 12 PHVRKESLMELVARVGKHVYG--RNGVLTDITSFGTVQLGY 50 (79)
Q Consensus 12 p~l~~e~~~~~~~~~~~~I~~--~GG~I~~~e~wG~R~LAY 50 (79)
..++..+++.+++.+.+.|.+ ..|.-+.+..||.-.+..
T Consensus 14 ~~ls~~~~~~~l~~~~~~i~~~L~~g~~V~l~gfG~F~v~~ 54 (94)
T 1p71_A 14 ASVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRE 54 (94)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEE
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHhCCCeEEecCCEEEEEEE
Confidence 356777777777777777665 244567888999877764
No 116
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.63 E-value=65 Score=17.02 Aligned_cols=16 Identities=6% Similarity=0.069 Sum_probs=11.3
Q ss_pred cCCCCHHHHHHHHHHH
Q 034908 11 KPHVRKESLMELVARV 26 (79)
Q Consensus 11 ~p~l~~e~~~~~~~~~ 26 (79)
.++.+++++.+++.++
T Consensus 21 ~~~~t~~~l~~~f~~~ 36 (85)
T 2ytc_A 21 GDTITETDLRNHFYQF 36 (85)
T ss_dssp TTTSCHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHhC
Confidence 3677888887776654
No 117
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=22.51 E-value=52 Score=16.97 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=14.4
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 034908 11 KPHVRKESLMELVARVGK 28 (79)
Q Consensus 11 ~p~l~~e~~~~~~~~~~~ 28 (79)
.++.+++++.+++.++..
T Consensus 8 p~~~t~~~l~~~F~~~G~ 25 (75)
T 1iqt_A 8 SPDTPEEKIREYFGGFGE 25 (75)
T ss_dssp CSSCCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHhcCC
Confidence 478899999999888743
No 118
>2e60_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.51 E-value=44 Score=20.08 Aligned_cols=21 Identities=10% Similarity=0.249 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhhhccCCcE
Q 034908 16 KESLMELVARVGKHVYGRNGV 36 (79)
Q Consensus 16 ~e~~~~~~~~~~~~I~~~GG~ 36 (79)
+.++..++++++..|.++|-.
T Consensus 24 ~~~~~~iI~ktA~fVarnG~~ 44 (101)
T 2e60_A 24 TAKMHAIIERTASFVCRQGAQ 44 (101)
T ss_dssp SHHHHHHHHHHHHHHHHSCHH
T ss_pred CHHHHHHHHHHHHHHHHhCHH
Confidence 457999999999999998843
No 119
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=22.49 E-value=48 Score=26.56 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHHhhhhcc-CCcEEEe
Q 034908 13 HVRKESLMELVARVGKHVYG-RNGVLTD 39 (79)
Q Consensus 13 ~l~~e~~~~~~~~~~~~I~~-~GG~I~~ 39 (79)
.|+++++.++.+++.+.+.+ .|+++|+
T Consensus 768 TLtdeev~~~~~ki~~~l~~~~ga~LR~ 795 (795)
T 3pco_B 768 TLEEEEIAATVAKCVEALKERFQASLRD 795 (795)
T ss_dssp CCCHHHHHHHHHHHHHHTTTTTCCBCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCEeCC
Confidence 68999999999999999887 5888763
No 120
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=22.07 E-value=56 Score=18.04 Aligned_cols=17 Identities=6% Similarity=0.147 Sum_probs=14.1
Q ss_pred cCCCCHHHHHHHHHHHh
Q 034908 11 KPHVRKESLMELVARVG 27 (79)
Q Consensus 11 ~p~l~~e~~~~~~~~~~ 27 (79)
.++.+++++.+++..+.
T Consensus 10 p~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 10 PQAATEDDIRGQLQSHG 26 (91)
T ss_dssp CSSCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 37889999999888875
No 121
>3tdq_A PILY2 protein; fimbiria, cell adhesion, structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.10A {Pseudomonas aeruginosa}
Probab=22.06 E-value=57 Score=19.74 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=18.8
Q ss_pred CceeEEEEEcCCCCHHHHHHHHHHHh
Q 034908 2 PLYDCMLLLKPHVRKESLMELVARVG 27 (79)
Q Consensus 2 ~~YE~~~I~~p~l~~e~~~~~~~~~~ 27 (79)
|.-+.++|+| ..++++++..+++-+
T Consensus 64 p~I~siyilr-Q~s~~e~~~~~~~~~ 88 (98)
T 3tdq_A 64 STITDIYIHK-QMSEQELAEMIEKEQ 88 (98)
T ss_dssp CEEEEEEECC-TTSEEHHHHHHHHC-
T ss_pred ccceEEEEEe-cCCHHHHHHHHhhcc
Confidence 4567899999 558899998887643
No 122
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=22.05 E-value=72 Score=17.34 Aligned_cols=21 Identities=5% Similarity=-0.069 Sum_probs=16.3
Q ss_pred HHHHHhhhhccCCcEEEeeec
Q 034908 22 LVARVGKHVYGRNGVLTDITS 42 (79)
Q Consensus 22 ~~~~~~~~I~~~GG~I~~~e~ 42 (79)
.+.++...+.++|+.|.+.+-
T Consensus 18 ~~g~v~~~L~~~~~~I~~~~Y 38 (76)
T 3lh2_S 18 DITGILWLLGQVDGKIINSDV 38 (76)
T ss_dssp HHHHHHHHHHHTTCEEEEEEE
T ss_pred CHHHHHHHHHHCCCEEEcccc
Confidence 356788888889999988764
No 123
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis} PDB: 1ybu_A*
Probab=21.85 E-value=57 Score=20.64 Aligned_cols=22 Identities=14% Similarity=-0.017 Sum_probs=16.7
Q ss_pred HHHHHHHHhhhhccCCcEEEee
Q 034908 19 LMELVARVGKHVYGRNGVLTDI 40 (79)
Q Consensus 19 ~~~~~~~~~~~I~~~GG~I~~~ 40 (79)
+....+.+.+++.++||.+.+.
T Consensus 44 l~~~~~~~~~~i~~~gG~v~k~ 65 (184)
T 1ybt_A 44 LDNHDTIVCHEIQRFGGREVNT 65 (184)
T ss_dssp HHHHHHHHHHHHHHTTCEECCC
T ss_pred HHHHHHHHHHHHHHcCCEEEeE
Confidence 4445566788889999999776
No 124
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=21.70 E-value=47 Score=19.23 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHhhhhcc--CCcEEEeeeccccccccc
Q 034908 12 PHVRKESLMELVARVGKHVYG--RNGVLTDITSFGTVQLGY 50 (79)
Q Consensus 12 p~l~~e~~~~~~~~~~~~I~~--~GG~I~~~e~wG~R~LAY 50 (79)
..++..+++.+++.+.+.|.+ ..|.-+.+..||.-.+..
T Consensus 16 ~~ls~~~~~~vl~~~~~~i~~~L~~G~~V~l~gfG~F~v~~ 56 (99)
T 1owf_A 16 LGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRD 56 (99)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEE
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHhCCCeEEecCCEEEEEEE
Confidence 356778888888877777765 245567889999888754
No 125
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=21.63 E-value=1.3e+02 Score=17.52 Aligned_cols=39 Identities=23% Similarity=0.387 Sum_probs=25.3
Q ss_pred eeEEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeecccccc
Q 034908 4 YDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQ 47 (79)
Q Consensus 4 YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~ 47 (79)
+++..|++|.. -+++.+.+.+.. -.|.++.++.-.|+.+
T Consensus 2 k~I~aII~~~~-~~~v~~aL~~~G----~~g~Tv~~v~G~G~~~ 40 (112)
T 1hwu_A 2 KQVTAIIKPFK-LDEVRESLAEVG----VTGLTVTEVKGFGRQK 40 (112)
T ss_dssp EEEEEEECGGG-HHHHHHHHHHTT----CCCCEEEEEEEEC---
T ss_pred EEEEEEECHHH-HHHHHHHHHHCC----CCeEEEEeeEeEcCcc
Confidence 67889999874 344555555543 2688999888888754
No 126
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=21.59 E-value=96 Score=15.98 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=18.2
Q ss_pred CCCCHHHHHHHHHHHhhhhcc
Q 034908 12 PHVRKESLMELVARVGKHVYG 32 (79)
Q Consensus 12 p~l~~e~~~~~~~~~~~~I~~ 32 (79)
+..++++.+++++.+.+.+.+
T Consensus 8 ~grt~eqK~~L~~~it~~~~~ 28 (62)
T 3m20_A 8 PKLDVGKKREFVERLTSVAAE 28 (62)
T ss_dssp SCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 567999999999999998876
No 127
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.47 E-value=74 Score=17.41 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=11.7
Q ss_pred cCCCCHHHHHHHHHHH
Q 034908 11 KPHVRKESLMELVARV 26 (79)
Q Consensus 11 ~p~l~~e~~~~~~~~~ 26 (79)
.++++++++.+++.++
T Consensus 26 p~~~t~~~l~~~F~~~ 41 (97)
T 1why_A 26 GPNTSLAALAREFDRF 41 (97)
T ss_dssp CSSCCHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHhc
Confidence 3678888888777655
No 128
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=21.44 E-value=1.1e+02 Score=18.13 Aligned_cols=23 Identities=4% Similarity=-0.109 Sum_probs=19.5
Q ss_pred cCCCCHHHHHHHHHHHhhhhccC
Q 034908 11 KPHVRKESLMELVARVGKHVYGR 33 (79)
Q Consensus 11 ~p~l~~e~~~~~~~~~~~~I~~~ 33 (79)
.+..++++.+++.+.+.+.+.+.
T Consensus 73 ~~grt~eqK~~l~~~l~~~l~~~ 95 (131)
T 2aal_A 73 SRPRSEEQKVCFYKLLTGALERD 95 (131)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999998873
No 129
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.41 E-value=50 Score=17.94 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=16.2
Q ss_pred cCCCCHHHHHHHHHHHhhhhc
Q 034908 11 KPHVRKESLMELVARVGKHVY 31 (79)
Q Consensus 11 ~p~l~~e~~~~~~~~~~~~I~ 31 (79)
.++.+++++.+++.++..+|.
T Consensus 17 p~~~t~~~l~~~F~~~G~vv~ 37 (93)
T 2cqh_A 17 SPAVTADDLRQLFGDRKLPLA 37 (93)
T ss_dssp CTTCCHHHHHHHHHHTTCCCS
T ss_pred CCCCCHHHHHHHHHHcCCceE
Confidence 477889999999888876443
No 130
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=21.32 E-value=85 Score=20.98 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=20.4
Q ss_pred EcCCCCHHHHHHHHHHHhhhhccC
Q 034908 10 LKPHVRKESLMELVARVGKHVYGR 33 (79)
Q Consensus 10 ~~p~l~~e~~~~~~~~~~~~I~~~ 33 (79)
+.+.+++++++.+++.+.+++.++
T Consensus 348 ~~~~~t~edi~~~~~~l~~~l~~~ 371 (374)
T 3uwc_A 348 AHPYLTEEEINYIIKKVREFYLEK 371 (374)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhh
Confidence 456789999999999999988764
No 131
>3bgh_A Protein HPAA, putative neuraminyllactose-binding hemagglutinin; structural genomics, unknown function, PSI-2, protein struct initiative; 2.45A {Helicobacter pylori}
Probab=21.27 E-value=94 Score=21.70 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=38.2
Q ss_pred eeEEEEEcCCC----------CHHHHHHHHHHHhhhhccCCcEEEeeecccccccccccccC
Q 034908 4 YDCMLLLKPHV----------RKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKL 55 (79)
Q Consensus 4 YE~~~I~~p~l----------~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~I~k~ 55 (79)
..++.|+.|.+ ..+-.++++.++++++.+.|=.|..+. -...|+|..++.
T Consensus 36 ~~~I~ll~P~iq~sdNi~k~Y~~kF~~al~~qIq~il~krGY~v~~~~--d~d~Lt~~~Kkk 95 (236)
T 3bgh_A 36 SHLVVLIEPKIEINKVIPESYQKEFEKSLFLQLSSFLERKGYSVSQFK--DASEIPQDIKEK 95 (236)
T ss_dssp CCEEEEECCEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTTCEEEEES--SGGGCCHHHHHH
T ss_pred ceEEEEecccceecccccHHHHHHHHHHHHHHHHHHHHhCCceEeecC--ChhhCCHHHhhc
Confidence 46778888843 234468899999999999999999873 456788887664
No 132
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium}
Probab=21.20 E-value=1.2e+02 Score=20.83 Aligned_cols=40 Identities=8% Similarity=0.162 Sum_probs=32.1
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeecccccccccccccC
Q 034908 6 CMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKL 55 (79)
Q Consensus 6 ~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~I~k~ 55 (79)
.+||++-.|+|.++.++.+-+.+.- ..||.|-.-+.|+-.
T Consensus 158 vtFiI~~~L~D~~l~~l~~fi~~f~----------~~WG~~~IqFsI~L~ 197 (227)
T 3gr1_A 158 VTFVIQGALDDVEILRARQFVDSYY----------RTWGGRYVQFAIELK 197 (227)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHHHH----------HHHCSSSEEEEECCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHH----------HHhCccEEEEEEEec
Confidence 4789999999999998888777763 468888888888744
No 133
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=21.16 E-value=1.1e+02 Score=21.60 Aligned_cols=49 Identities=12% Similarity=0.073 Sum_probs=35.6
Q ss_pred ceeEEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeecccccccccccccC
Q 034908 3 LYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKL 55 (79)
Q Consensus 3 ~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~I~k~ 55 (79)
.|.++++... -++..++++.+...+. -||.+.-.+.+|.|.+-|+.-..
T Consensus 188 ~FDvV~~~a~---~~d~~~~l~el~r~Lk-PGG~Lvv~~~~~~r~~l~~~v~~ 236 (298)
T 3fpf_A 188 EFDVLMVAAL---AEPKRRVFRNIHRYVD-TETRIIYRTYTGMRAILYAPVSD 236 (298)
T ss_dssp CCSEEEECTT---CSCHHHHHHHHHHHCC-TTCEEEEEECCGGGGGSSCCCCT
T ss_pred CcCEEEECCC---ccCHHHHHHHHHHHcC-CCcEEEEEcCcchhhhccccCCh
Confidence 4777877542 2446678888888754 68898888889999998876643
No 134
>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 3pd2_A* 2hl1_A* 3pd3_A* 3pd4_A* 3pd5_A*
Probab=21.09 E-value=1.7e+02 Score=18.74 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHhhhhccCCcEEEeeecccccccccccccCCeeeEEEEEEEEeecCcccccc
Q 034908 15 RKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQLIPTWEFNSGSIFEGF 77 (79)
Q Consensus 15 ~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~I~k~~~g~Y~~~~~~~~~~~~~~e~~ 77 (79)
+++...++++++.+.+.+.|- ++.+-.=|+|. -|.+++-+-|++|-+
T Consensus 90 ~P~~A~~iL~~le~~L~~~g~---------------eV~raPFGwyK-~F~i~ckGHPLsELS 136 (143)
T 2hl0_A 90 KPSVAMDILNRVYQGLKERGF---------------NVGKAPFGYYK-AFKISCKGHPLAELS 136 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC---------------EEEECCSSEEE-EEEEEECCCTTSEEE
T ss_pred ChHHHHHHHHHHHHHHHhCCC---------------eEEEeCCccce-eEEEEecCccHHHhc
Confidence 466677888888888877663 34445568999 789999999988843
No 135
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=21.05 E-value=63 Score=20.72 Aligned_cols=33 Identities=9% Similarity=-0.021 Sum_probs=26.0
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEe
Q 034908 6 CMLLLKPHVRKESLMELVARVGKHVYGRNGVLTD 39 (79)
Q Consensus 6 ~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~ 39 (79)
-++++.|--+.++-....+++.+.+.++| .|..
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~ 36 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLT 36 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccc
Confidence 47888888776666688899999999888 7643
No 136
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=20.89 E-value=1.2e+02 Score=18.64 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHhhhhccCCcEEEeeecccccccccccccCCeeeEE
Q 034908 13 HVRKESLMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKLDGRYYQ 61 (79)
Q Consensus 13 ~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~I~k~~~g~Y~ 61 (79)
.+++++++.+++++.+.+...+ +.|.+.+.......++
T Consensus 34 ~~~~eel~~av~~lN~~~~~~n-----------~~L~F~vdee~~~~vV 71 (117)
T 2hc5_A 34 QVSYTNLAEMVGEMNKLLEPSQ-----------VHLKFELHDKLNEYYV 71 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSS-----------CCEEEEEEEETTEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhcC-----------CceEEEEecCCCcEEE
Confidence 4578999999999999987644 5677888877766655
No 137
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=20.88 E-value=53 Score=23.07 Aligned_cols=37 Identities=19% Similarity=0.136 Sum_probs=28.2
Q ss_pred CceeEEEEEcCCCCHHHHHHHHHHHhhhhccCCcEEEeeeccc
Q 034908 2 PLYDCMLLLKPHVRKESLMELVARVGKHVYGRNGVLTDITSFG 44 (79)
Q Consensus 2 ~~YE~~~I~~p~l~~e~~~~~~~~~~~~I~~~GG~I~~~e~wG 44 (79)
+.|-+.++. || ...++.++++.+.++|+-|.+.+...
T Consensus 9 ~~~vLtv~c-~D-----r~GIVa~Vs~~La~~g~NI~d~~q~~ 45 (292)
T 3lou_A 9 HQFVLTLSC-PS-----AAGQVAAVVGLLDRHRCYVDELTVFD 45 (292)
T ss_dssp CEEEEEEEE-ES-----CSCHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CcEEEEEEc-CC-----CCCHHHHHHHHHHHCCCCEEeeEEEe
Confidence 345444444 34 45789999999999999999999874
No 138
>1laj_A Capsid protein; anti-parallel beta sheets, jelly roll, T=3 icosahedral virus, protein-RNA complex, disulphide bridge, icosahedral virus; 3.40A {Tomato aspermy virus} SCOP: b.121.4.5
Probab=20.84 E-value=72 Score=21.92 Aligned_cols=38 Identities=16% Similarity=0.312 Sum_probs=29.2
Q ss_pred eccccc-ccccccccCCeeeEEEEEEEEeecCcccccccC
Q 034908 41 TSFGTV-QLGYGIKKLDGRYYQLIPTWEFNSGSIFEGFMW 79 (79)
Q Consensus 41 e~wG~R-~LAY~I~k~~~g~Y~~~~~~~~~~~~~~e~~~~ 79 (79)
..+|.| -|++++....+.--. .+++..||.|-|+.-.|
T Consensus 84 ~sfGqRL~lP~~Vsey~kk~vS-ciQ~RlNP~pkFdSTvw 122 (217)
T 1laj_A 84 KSFGQRLIIPVPVSEYPKKKVS-CVQVRLNPSPKFNSTIW 122 (217)
T ss_dssp CEEEEECCCCTTTTTCTTSEEE-EEEEEEEECTTCCCCEE
T ss_pred ccccceeecccchhhcccccee-EEEeeccCCcccCceeE
Confidence 346665 578999887666555 67899999999998776
No 139
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=20.72 E-value=76 Score=17.47 Aligned_cols=22 Identities=9% Similarity=0.157 Sum_probs=17.8
Q ss_pred cCCCCHHHHHHHHHHHhhhhcc
Q 034908 11 KPHVRKESLMELVARVGKHVYG 32 (79)
Q Consensus 11 ~p~l~~e~~~~~~~~~~~~I~~ 32 (79)
+-.+++++..++++-+.+.|.+
T Consensus 2 kd~lt~eq~~aILkaLdeaIe~ 23 (57)
T 3fxd_A 2 KDQLSDEQKETILKALNDAIEK 23 (57)
T ss_dssp --CCCHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHc
Confidence 3478999999999999998874
No 140
>2lor_A Transmembrane protein 141; helical bundle; NMR {Homo sapiens}
Probab=26.06 E-value=21 Score=22.16 Aligned_cols=36 Identities=14% Similarity=0.069 Sum_probs=27.0
Q ss_pred HHHHHHHHhhhhccCCcEEEeeecccccccccccccC
Q 034908 19 LMELVARVGKHVYGRNGVLTDITSFGTVQLGYGIKKL 55 (79)
Q Consensus 19 ~~~~~~~~~~~I~~~GG~I~~~e~wG~R~LAY~I~k~ 55 (79)
-.++++.+...++-.|| .--......|+|+||.+-+
T Consensus 28 S~Af~~Gl~tF~lG~~~-~f~~Q~~vqrklpYp~qwn 63 (108)
T 2lor_A 28 SHAFMKGVFTFVTGTGM-AFGLQMFIQRKFPYPLQWS 63 (108)
Confidence 34677788888886654 4467788999999998753
No 141
>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1
Probab=20.53 E-value=90 Score=18.85 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHhhhhccCCc----EEEeeecccc--cccccccccCCeee
Q 034908 15 RKESLMELVARVGKHVYGRNG----VLTDITSFGT--VQLGYGIKKLDGRY 59 (79)
Q Consensus 15 ~~e~~~~~~~~~~~~I~~~GG----~I~~~e~wG~--R~LAY~I~k~~~g~ 59 (79)
+-+++-++++++.+.+.+.|+ .+.+++.-=. ..+.-++++.++||
T Consensus 53 e~devm~vv~~~~e~~~~~G~~RV~t~iKId~R~dk~~t~~~Kv~~v~~~~ 103 (109)
T 1yqh_A 53 ELDVLLDVVKRAQQACVDAGAEEVITSIKIHYRPSTGVTIDEKVWKYRDEY 103 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEEEEEEEEECCTTTCCCHHHHHGGGCTTC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEecCCCCCCHHHHHHHHHhCC
Confidence 467788888888888888776 5566655322 34455666666554
No 142
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=20.11 E-value=45 Score=20.43 Aligned_cols=19 Identities=11% Similarity=0.190 Sum_probs=15.1
Q ss_pred EEcCCCCHHHHHHHHHHHh
Q 034908 9 LLKPHVRKESLMELVARVG 27 (79)
Q Consensus 9 I~~p~l~~e~~~~~~~~~~ 27 (79)
+++..|+++|+++++..+.
T Consensus 34 LL~r~Ltdeev~~Va~~L~ 52 (103)
T 2kvc_A 34 LLCRRLSHDEVKAVANELM 52 (103)
T ss_dssp HHTTTSCHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHH
Confidence 4667899999998877765
Done!