BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034910
         (79 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZQM|A Chain A, Crystal Structure Of The Prefoldin Beta Subunit From
          Thermococcus Strain Ks-1
          Length = 117

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 7/50 (14%)

Query: 29 AIAELNSLSSSRAVYQKNGNIFFRTTNQKATASEQKHLDVTKRKLEMLNI 78
          A+ E+ SL     VY+  G +  +TT  KA A         K K+E L +
Sbjct: 42 ALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAE-------LKEKIETLEV 84


>pdb|2ZDI|A Chain A, Crystal Structure Of Prefoldin From Pyrococcus
          Horikoshii Ot3
 pdb|2ZDI|B Chain B, Crystal Structure Of Prefoldin From Pyrococcus
          Horikoshii Ot3
          Length = 117

 Score = 26.6 bits (57), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 12/49 (24%), Positives = 26/49 (53%)

Query: 29 AIAELNSLSSSRAVYQKNGNIFFRTTNQKATASEQKHLDVTKRKLEMLN 77
          A+ E+ +L     +Y+  G +  +TT +KA    ++ ++  + +L  LN
Sbjct: 42 ALEEIETLPDDAQIYKTVGTLIVKTTKEKAVQELKEKIETLEVRLNALN 90


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.123    0.316 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,459,667
Number of Sequences: 62578
Number of extensions: 36130
Number of successful extensions: 77
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 72
Number of HSP's gapped (non-prelim): 9
length of query: 79
length of database: 14,973,337
effective HSP length: 48
effective length of query: 31
effective length of database: 11,969,593
effective search space: 371057383
effective search space used: 371057383
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)