BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034910
(79 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54M71|PFD6_DICDI Probable prefoldin subunit 6 OS=Dictyostelium discoideum GN=pfdn6
PE=3 SV=1
Length = 140
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 16 KAHLIKEVKSHEVAIAELNSLSSSRAVYQKNGNIFFRTTNQKATASEQKHLDV 68
++ L+ ++ +E+ E + L S +Y+ NG + F+ T ++A + LD+
Sbjct: 43 RSKLLTQLNENEMVKKEFDLLESEAKIYKLNGPVLFKQTKEEAENTITSRLDI 95
>sp|P22620|ABRA_PLAFC 101 kDa malaria antigen OS=Plasmodium falciparum (isolate Camp /
Malaysia) GN=ABRA PE=3 SV=1
Length = 743
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 16 KAHLIKEVKSHEV----AIAELNSLSSSRAVYQKNGNIFFRTTNQKATAS 61
K HLI + KS+ + ++N L + QKN N+F NQKAT S
Sbjct: 141 KKHLIYKNKSYNPLLLSCVKKMNMLKENVDYIQKNQNLFKELMNQKATYS 190
>sp|Q8I5D2|ABRA_PLAF7 101 kDa malaria antigen OS=Plasmodium falciparum (isolate 3D7)
GN=ABRA PE=3 SV=1
Length = 743
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 16 KAHLIKEVKSHEV----AIAELNSLSSSRAVYQKNGNIFFRTTNQKATAS 61
K HLI + KS+ + ++N L + QKN N+F NQKAT S
Sbjct: 141 KKHLIYKNKSYNPLLLSCVKKMNMLKENVDYIQKNQNLFKELMNQKATYS 190
>sp|P23745|ABRA_PLAFG 101 kDa malaria antigen (Fragment) OS=Plasmodium falciparum
(isolate FCR-3 / Gambia) GN=ABRA PE=2 SV=1
Length = 600
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 16 KAHLIKEVKSHEV----AIAELNSLSSSRAVYQKNGNIFFRTTNQKATAS 61
K HLI + KS+ + ++N L + QKN N+F NQKAT S
Sbjct: 58 KKHLIYKNKSYNPLLLSCVKKMNMLKENVDYIQKNQNLFKELMNQKATYS 107
>sp|Q9HJ36|PFDB_THEAC Prefoldin subunit beta OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=pfdB PE=3 SV=1
Length = 124
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 23 VKSHEVAIAELNSLSSSRAVYQKNGNIFFRTTNQKATASE-QKHLDVTKRKLEML 76
+K + + ELN L + +Y+ G+I +R ++K E + +++TK +L L
Sbjct: 38 LKEMQKTLDELNKLDDNTPIYRTVGSILYRVQDKKKLVDELDEQIELTKIRLSTL 92
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.117 0.289
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,126,944
Number of Sequences: 539616
Number of extensions: 557392
Number of successful extensions: 1903
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1891
Number of HSP's gapped (non-prelim): 20
length of query: 79
length of database: 191,569,459
effective HSP length: 50
effective length of query: 29
effective length of database: 164,588,659
effective search space: 4773071111
effective search space used: 4773071111
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)