Query 034910
Match_columns 79
No_of_seqs 13 out of 15
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 07:35:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034910.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034910hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01920 Prefoldin_2: Prefoldi 98.7 3.5E-08 7.6E-13 61.0 4.8 64 14-77 19-82 (106)
2 TIGR02338 gimC_beta prefoldin, 98.0 1.3E-05 2.7E-10 52.4 5.2 63 15-77 25-87 (110)
3 cd00632 Prefoldin_beta Prefold 97.9 2.3E-05 4.9E-10 50.6 4.6 63 15-77 21-83 (105)
4 PRK09343 prefoldin subunit bet 97.6 0.00014 3.1E-09 48.9 4.4 63 14-76 28-90 (121)
5 COG1382 GimC Prefoldin, chaper 96.6 0.0042 9E-08 43.5 4.5 63 14-76 27-89 (119)
6 cd00890 Prefoldin Prefoldin is 94.4 0.065 1.4E-06 34.0 3.5 61 17-77 23-107 (129)
7 cd00584 Prefoldin_alpha Prefol 70.4 8.4 0.00018 25.0 3.6 59 18-76 24-106 (129)
8 PRK03947 prefoldin subunit alp 64.7 19 0.0004 23.8 4.5 61 16-76 29-113 (140)
9 PF06462 Hyd_WA: Propeller; I 62.8 4.1 8.9E-05 22.0 0.9 13 45-57 8-20 (32)
10 KOG4098 Molecular chaperone Pr 61.7 21 0.00046 26.2 4.6 47 17-63 39-85 (140)
11 PF08285 DPM3: Dolichol-phosph 55.0 9.9 0.00021 25.1 1.9 29 48-76 59-87 (91)
12 smart00706 TECPR Beta propelle 53.7 7.1 0.00015 20.4 0.8 9 45-53 26-34 (35)
13 KOG3478 Prefoldin subunit 6, K 51.9 24 0.00052 25.4 3.5 58 19-76 31-88 (120)
14 COG4902 Uncharacterized protei 48.8 17 0.00036 27.8 2.5 40 39-78 64-103 (189)
15 KOG2461 Transcription factor B 47.7 8.2 0.00018 31.2 0.7 18 41-58 116-133 (396)
16 PF03020 LEM: LEM domain; Int 44.6 4.7 0.0001 23.9 -0.8 27 18-46 10-36 (43)
17 PF02797 Chal_sti_synt_C: Chal 42.8 8.3 0.00018 26.8 0.1 15 35-49 86-100 (151)
18 cd04878 ACT_AHAS N-terminal AC 41.7 17 0.00036 19.5 1.1 54 15-77 13-66 (72)
19 PLN02706 glucosamine 6-phospha 37.2 14 0.0003 23.1 0.4 23 25-47 116-138 (150)
20 cd00089 HR1 Protein kinase C-r 36.2 37 0.00081 20.4 2.2 33 38-77 30-62 (72)
21 PRK00736 hypothetical protein; 36.1 96 0.0021 19.1 4.1 40 15-76 6-45 (68)
22 cd01048 Ferritin_like_AB2 Unch 35.5 35 0.00075 22.8 2.2 39 40-78 16-55 (135)
23 PF07494 Reg_prop: Two compone 32.3 32 0.0007 17.1 1.3 10 45-54 14-23 (24)
24 PF14837 INTS5_N: Integrator c 31.8 14 0.0003 28.0 -0.3 35 28-62 30-65 (213)
25 COG3797 Uncharacterized protei 31.4 35 0.00076 25.7 1.8 45 18-69 19-63 (178)
26 PF02071 NSF: Aromatic-di-Alan 30.0 17 0.00036 16.7 -0.1 9 42-50 4-12 (12)
27 PF06970 RepA_N: Replication i 28.2 47 0.001 21.0 1.7 22 39-60 39-60 (76)
28 PRK02119 hypothetical protein; 27.7 1.6E+02 0.0034 18.5 4.1 40 15-76 10-49 (73)
29 PF08020 DUF1706: Protein of u 27.3 87 0.0019 22.4 3.2 26 16-41 7-33 (166)
30 PRK04406 hypothetical protein; 27.0 1.7E+02 0.0037 18.5 4.2 40 15-76 12-51 (75)
31 cd04881 ACT_HSDH-Hom ACT_HSDH_ 26.8 57 0.0012 17.6 1.7 55 15-77 13-67 (79)
32 PRK13668 hypothetical protein; 26.4 37 0.0008 26.6 1.2 35 18-53 139-173 (267)
33 PF06412 TraD: Conjugal transf 25.9 27 0.00058 21.4 0.3 25 29-53 39-64 (65)
34 PF10280 Med11: Mediator compl 25.5 32 0.00069 22.9 0.7 50 18-68 14-70 (117)
35 PF09968 DUF2202: Uncharacteri 24.8 43 0.00092 24.5 1.2 34 41-78 21-54 (162)
36 PRK00295 hypothetical protein; 24.7 1.8E+02 0.0039 17.9 4.1 39 16-76 7-45 (68)
37 KOG3501 Molecular chaperone Pr 24.5 1.1E+02 0.0023 21.9 3.1 43 14-56 10-66 (114)
38 PRK02793 phi X174 lysis protei 24.3 1.9E+02 0.0041 18.0 4.2 41 14-76 8-48 (72)
39 smart00540 LEM in nuclear memb 23.9 43 0.00093 19.7 0.9 28 17-46 9-36 (44)
40 PTZ00330 acetyltransferase; Pr 23.7 32 0.00069 21.0 0.4 13 35-47 123-135 (147)
41 PF13758 Prefoldin_3: Prefoldi 23.3 62 0.0014 22.2 1.8 19 55-73 80-98 (99)
42 PF10858 DUF2659: Protein of u 23.0 42 0.00091 26.2 1.0 27 32-58 40-68 (220)
43 COG5186 PAP1 Poly(A) polymeras 22.9 56 0.0012 28.3 1.8 40 12-52 318-357 (552)
44 cd04487 RecJ_OBF2_like RecJ_OB 22.1 33 0.0007 21.1 0.2 18 31-54 5-22 (73)
45 cd05727 Ig2_Contactin-2-like S 20.8 32 0.0007 22.3 -0.0 17 39-55 52-68 (96)
46 KOG0092 GTPase Rab5/YPT51 and 20.6 84 0.0018 24.1 2.1 42 13-65 116-159 (200)
47 cd02116 ACT ACT domains are co 20.6 59 0.0013 15.1 0.9 38 16-56 12-49 (60)
48 KOG2666 UDP-glucose/GDP-mannos 20.5 53 0.0012 28.0 1.2 20 42-61 58-78 (481)
No 1
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=98.69 E-value=3.5e-08 Score=60.99 Aligned_cols=64 Identities=19% Similarity=0.447 Sum_probs=57.7
Q ss_pred hhHHHHHHHHhhhhhhHHHhhCCCchhhhHhhhCceeeeechhhhhhhhhhhhhHHHHHhhhcc
Q 034910 14 DLKAHLIKEVKSHEVAIAELNSLSSSRAVYQKNGNIFFRTTNQKATASEQKHLDVTKRKLEMLN 77 (79)
Q Consensus 14 ~kk~~L~kevr~heVai~ELnnLp~sRaVYQK~GNlFFrts~q~a~~seQKqLd~aka~l~kl~ 77 (79)
.....|..+++.+++++.||+.||+.|.||..=|++||..+..++...-.++.+..+.++.+|.
T Consensus 19 ~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~ 82 (106)
T PF01920_consen 19 QQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLE 82 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999999999999999999999999999999888888764
No 2
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=98.03 E-value=1.3e-05 Score=52.43 Aligned_cols=63 Identities=22% Similarity=0.390 Sum_probs=56.4
Q ss_pred hHHHHHHHHhhhhhhHHHhhCCCchhhhHhhhCceeeeechhhhhhhhhhhhhHHHHHhhhcc
Q 034910 15 LKAHLIKEVKSHEVAIAELNSLSSSRAVYQKNGNIFFRTTNQKATASEQKHLDVTKRKLEMLN 77 (79)
Q Consensus 15 kk~~L~kevr~heVai~ELnnLp~sRaVYQK~GNlFFrts~q~a~~seQKqLd~aka~l~kl~ 77 (79)
....|..+++.|+..+.||+.||+.+.||.-=|++|...++.++...-.+.++....+++.|.
T Consensus 25 q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~le 87 (110)
T TIGR02338 25 QKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQ 87 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678889999999999999999999999999999999999999988888888888777664
No 3
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=97.90 E-value=2.3e-05 Score=50.60 Aligned_cols=63 Identities=17% Similarity=0.390 Sum_probs=55.3
Q ss_pred hHHHHHHHHhhhhhhHHHhhCCCchhhhHhhhCceeeeechhhhhhhhhhhhhHHHHHhhhcc
Q 034910 15 LKAHLIKEVKSHEVAIAELNSLSSSRAVYQKNGNIFFRTTNQKATASEQKHLDVTKRKLEMLN 77 (79)
Q Consensus 15 kk~~L~kevr~heVai~ELnnLp~sRaVYQK~GNlFFrts~q~a~~seQKqLd~aka~l~kl~ 77 (79)
....|.-+++.|+-++.||..||+.+.||..=|++|+..+..+|...--++++....++..|.
T Consensus 21 ~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~ 83 (105)
T cd00632 21 QRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLE 83 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788999999999999999999999999999999999999888887777777776654
No 4
>PRK09343 prefoldin subunit beta; Provisional
Probab=97.56 E-value=0.00014 Score=48.91 Aligned_cols=63 Identities=17% Similarity=0.325 Sum_probs=56.4
Q ss_pred hhHHHHHHHHhhhhhhHHHhhCCCchhhhHhhhCceeeeechhhhhhhhhhhhhHHHHHhhhc
Q 034910 14 DLKAHLIKEVKSHEVAIAELNSLSSSRAVYQKNGNIFFRTTNQKATASEQKHLDVTKRKLEML 76 (79)
Q Consensus 14 ~kk~~L~kevr~heVai~ELnnLp~sRaVYQK~GNlFFrts~q~a~~seQKqLd~aka~l~kl 76 (79)
..+-.|.-+++..+.++.||+.||+.-.||.--|++|.+++..+|...--+.++....+++.|
T Consensus 28 ~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~l 90 (121)
T PRK09343 28 QQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTL 90 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778889999999999999999999999999999999999999888888888888766
No 5
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0042 Score=43.48 Aligned_cols=63 Identities=24% Similarity=0.388 Sum_probs=52.0
Q ss_pred hhHHHHHHHHhhhhhhHHHhhCCCchhhhHhhhCceeeeechhhhhhhhhhhhhHHHHHhhhc
Q 034910 14 DLKAHLIKEVKSHEVAIAELNSLSSSRAVYQKNGNIFFRTTNQKATASEQKHLDVTKRKLEML 76 (79)
Q Consensus 14 ~kk~~L~kevr~heVai~ELnnLp~sRaVYQK~GNlFFrts~q~a~~seQKqLd~aka~l~kl 76 (79)
-.|-.|.-+++.-+-++.||+-|+..=.||.+-||+||.++..+++..-.+.++.-.-|++-|
T Consensus 27 ~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tL 89 (119)
T COG1382 27 LQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTL 89 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888999999999999999999999999999999999887666666655555444
No 6
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=94.39 E-value=0.065 Score=33.98 Aligned_cols=61 Identities=20% Similarity=0.300 Sum_probs=50.9
Q ss_pred HHHHHHHhhhhhhHHHhhCCC-----------------------chhhhHhhhC-ceeeeechhhhhhhhhhhhhHHHHH
Q 034910 17 AHLIKEVKSHEVAIAELNSLS-----------------------SSRAVYQKNG-NIFFRTTNQKATASEQKHLDVTKRK 72 (79)
Q Consensus 17 ~~L~kevr~heVai~ELnnLp-----------------------~sRaVYQK~G-NlFFrts~q~a~~seQKqLd~aka~ 72 (79)
..|...+..++-++.+|++|+ +...||-.=| |+|...+...|...-.+.++..+.+
T Consensus 23 ~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve~~~~eA~~~l~~r~~~l~~~ 102 (129)
T cd00890 23 QKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVEKSLEEAIEFLKKRLETLEKQ 102 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEEecHHHHHHHHHHHHHHHHHH
Confidence 345556667888899999988 7888999999 9999999999999888888888877
Q ss_pred hhhcc
Q 034910 73 LEMLN 77 (79)
Q Consensus 73 l~kl~ 77 (79)
+.+|+
T Consensus 103 ~~~l~ 107 (129)
T cd00890 103 IEKLE 107 (129)
T ss_pred HHHHH
Confidence 77664
No 7
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=70.36 E-value=8.4 Score=24.95 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=47.1
Q ss_pred HHHHHHhhhhhhHHHhhCCCc------------------------hhhhHhhhCceeeeechhhhhhhhhhhhhHHHHHh
Q 034910 18 HLIKEVKSHEVAIAELNSLSS------------------------SRAVYQKNGNIFFRTTNQKATASEQKHLDVTKRKL 73 (79)
Q Consensus 18 ~L~kevr~heVai~ELnnLp~------------------------sRaVYQK~GNlFFrts~q~a~~seQKqLd~aka~l 73 (79)
.|...+..++-++..|+.|++ +|-+..=.+|+|--.+..+|...-++.++..+..+
T Consensus 24 ~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE~~~~eA~~~l~~r~~~l~~~~ 103 (129)
T cd00584 24 RLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVEKDLEEAIEFLDKKIEELTKQI 103 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHH
Confidence 466677789999999999986 55556667788888999999988888888887777
Q ss_pred hhc
Q 034910 74 EML 76 (79)
Q Consensus 74 ~kl 76 (79)
.+|
T Consensus 104 ~~l 106 (129)
T cd00584 104 EKL 106 (129)
T ss_pred HHH
Confidence 665
No 8
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=64.66 E-value=19 Score=23.80 Aligned_cols=61 Identities=16% Similarity=0.142 Sum_probs=45.7
Q ss_pred HHHHHHHHhhhhhhHHHhhCCCc-----------hhhhHh-------------hhCceeeeechhhhhhhhhhhhhHHHH
Q 034910 16 KAHLIKEVKSHEVAIAELNSLSS-----------SRAVYQ-------------KNGNIFFRTTNQKATASEQKHLDVTKR 71 (79)
Q Consensus 16 k~~L~kevr~heVai~ELnnLp~-----------sRaVYQ-------------K~GNlFFrts~q~a~~seQKqLd~aka 71 (79)
..+|...+..+.-++..|..|+. .+.+|- =.+|+|--.++.+|..--.+.++....
T Consensus 29 ~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g~~vE~~~~eA~~~l~~~~~~l~~ 108 (140)
T PRK03947 29 LEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAGYSAEKDLDEAIEILDKRKEELEK 108 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCCCEEEEecHHHHHHHHHHHHHHHHH
Confidence 44567777888899999999986 555554 334888888999998888887777776
Q ss_pred Hhhhc
Q 034910 72 KLEML 76 (79)
Q Consensus 72 ~l~kl 76 (79)
.+++|
T Consensus 109 ~~~~l 113 (140)
T PRK03947 109 ALEKL 113 (140)
T ss_pred HHHHH
Confidence 66655
No 9
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=62.76 E-value=4.1 Score=22.04 Aligned_cols=13 Identities=31% Similarity=0.715 Sum_probs=10.6
Q ss_pred hhCceeeeechhh
Q 034910 45 KNGNIFFRTTNQK 57 (79)
Q Consensus 45 K~GNlFFrts~q~ 57 (79)
.+|++|||+.+..
T Consensus 8 ~~G~v~~R~Gis~ 20 (32)
T PF06462_consen 8 SDGSVYFRTGISP 20 (32)
T ss_pred CCCCEEEECcCCC
Confidence 5799999997754
No 10
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=61.73 E-value=21 Score=26.18 Aligned_cols=47 Identities=19% Similarity=0.372 Sum_probs=40.3
Q ss_pred HHHHHHHhhhhhhHHHhhCCCchhhhHhhhCceeeeechhhhhhhhh
Q 034910 17 AHLIKEVKSHEVAIAELNSLSSSRAVYQKNGNIFFRTTNQKATASEQ 63 (79)
Q Consensus 17 ~~L~kevr~heVai~ELnnLp~sRaVYQK~GNlFFrts~q~a~~seQ 63 (79)
.+|.-++|.|-.-|.-|+.+.|+|+-|.-=|.+.--.|+++...--|
T Consensus 39 ~~LE~d~~EH~lVi~tlk~~dp~RKCfRmIgGvLVErTVkeVlP~L~ 85 (140)
T KOG4098|consen 39 TDLEMDLREHKLVIETLKDLDPTRKCFRMIGGVLVERTVKEVLPILQ 85 (140)
T ss_pred HHHHHhHHHHHHHHHHHHhcChhhHHHHHhccchhhhhHHHHhHHHH
Confidence 46777888999999999999999999999999999888888765433
No 11
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=54.98 E-value=9.9 Score=25.11 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=24.2
Q ss_pred ceeeeechhhhhhhhhhhhhHHHHHhhhc
Q 034910 48 NIFFRTTNQKATASEQKHLDVTKRKLEML 76 (79)
Q Consensus 48 NlFFrts~q~a~~seQKqLd~aka~l~kl 76 (79)
++|--.|..+|..+-|||.+.||+.|++-
T Consensus 59 ~v~tFnDcpeA~~eL~~eI~eAK~dLr~k 87 (91)
T PF08285_consen 59 GVATFNDCPEAAKELQKEIKEAKADLRKK 87 (91)
T ss_pred hhhccCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 45555678899999999999999999864
No 12
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=53.74 E-value=7.1 Score=20.39 Aligned_cols=9 Identities=56% Similarity=0.955 Sum_probs=7.4
Q ss_pred hhCceeeee
Q 034910 45 KNGNIFFRT 53 (79)
Q Consensus 45 K~GNlFFrt 53 (79)
++|+||||+
T Consensus 26 ~~g~i~~r~ 34 (35)
T smart00706 26 SDGNIYRRT 34 (35)
T ss_pred CCCCEEEEC
Confidence 588999986
No 13
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=51.91 E-value=24 Score=25.38 Aligned_cols=58 Identities=19% Similarity=0.400 Sum_probs=50.3
Q ss_pred HHHHHhhhhhhHHHhhCCCchhhhHhhhCceeeeechhhhhhhhhhhhhHHHHHhhhc
Q 034910 19 LIKEVKSHEVAIAELNSLSSSRAVYQKNGNIFFRTTNQKATASEQKHLDVTKRKLEML 76 (79)
Q Consensus 19 L~kevr~heVai~ELnnLp~sRaVYQK~GNlFFrts~q~a~~seQKqLd~aka~l~kl 76 (79)
|.-++..+..-..||+-|-+.-.||.--|++...-+-.+|.+.--|.||.--++|..+
T Consensus 31 le~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI~~Eikr~ 88 (120)
T KOG3478|consen 31 LETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFISKEIKRL 88 (120)
T ss_pred HHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4445567788899999999999999999999999999999999999999888777654
No 14
>COG4902 Uncharacterized protein conserved in archaea [Function unknown]
Probab=48.81 E-value=17 Score=27.76 Aligned_cols=40 Identities=35% Similarity=0.370 Sum_probs=28.7
Q ss_pred hhhhHhhhCceeeeechhhhhhhhhhhhhHHHHHhhhccC
Q 034910 39 SRAVYQKNGNIFFRTTNQKATASEQKHLDVTKRKLEMLNI 78 (79)
Q Consensus 39 sRaVYQK~GNlFFrts~q~a~~seQKqLd~aka~l~kl~~ 78 (79)
-|.||.+=-|=+=.---..+.+|||.+.|.-|.-|+|-|+
T Consensus 64 ARDVYL~LYnkw~l~IF~nIA~SEQ~HmDAVk~LlekYnv 103 (189)
T COG4902 64 ARDVYLYLYNKWNLPIFRNIAASEQEHMDAVKSLLEKYNV 103 (189)
T ss_pred HhhHHhhhhhccCcHHHHHHHHhHHHHHHHHHHHHHHcCC
Confidence 3677765544433333356889999999999999988764
No 15
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=47.66 E-value=8.2 Score=31.19 Aligned_cols=18 Identities=33% Similarity=0.541 Sum_probs=14.7
Q ss_pred hhHhhhCceeeeechhhh
Q 034910 41 AVYQKNGNIFFRTTNQKA 58 (79)
Q Consensus 41 aVYQK~GNlFFrts~q~a 58 (79)
..||.++||||+|-.--.
T Consensus 116 ~A~Q~~~~Ifyrt~r~I~ 133 (396)
T KOG2461|consen 116 LAFQIGENIFYRTIRDIR 133 (396)
T ss_pred HHHhccCceEEEecccCC
Confidence 579999999999876443
No 16
>PF03020 LEM: LEM domain; InterPro: IPR003887 The LEM domain is found in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin []. Defects in the emerin gene are a cause of Emery-Dreifuss muscular dystrophy, an X-linked disorder characterised by early contractures, muscle wasting, weakness and cardiomyopathy.; GO: 0005635 nuclear envelope; PDB: 2ODG_C 2ODC_I 1JEI_A 1H9F_A 1GJJ_A.
Probab=44.59 E-value=4.7 Score=23.91 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=17.1
Q ss_pred HHHHHHhhhhhhHHHhhCCCchhhhHhhh
Q 034910 18 HLIKEVKSHEVAIAELNSLSSSRAVYQKN 46 (79)
Q Consensus 18 ~L~kevr~heVai~ELnnLp~sRaVYQK~ 46 (79)
||..+++.+.+..+=+. ++.|.||.|.
T Consensus 10 ELr~~L~~~G~~~GPIt--~tTR~vY~kk 36 (43)
T PF03020_consen 10 ELREELREYGEPPGPIT--PTTRKVYEKK 36 (43)
T ss_dssp CCHHCCCCCT-S-------CCCHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCC--cccHHHHHHH
Confidence 57778888888777665 7899999874
No 17
>PF02797 Chal_sti_synt_C: Chalcone and stilbene synthases, C-terminal domain; InterPro: IPR012328 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyze the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group []. This domain of chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in the N-terminal domain. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 3OV2_A 3OV3_B 1Z1F_A 1Z1E_A 3ALE_C 3OIT_A 2H84_A 1TEE_D 1TED_A 2P0U_A ....
Probab=42.84 E-value=8.3 Score=26.84 Aligned_cols=15 Identities=40% Similarity=0.658 Sum_probs=11.6
Q ss_pred CCCchhhhHhhhCce
Q 034910 35 SLSSSRAVYQKNGNI 49 (79)
Q Consensus 35 nLp~sRaVYQK~GNl 49 (79)
.|-.||.||+..||+
T Consensus 86 ~l~~Sr~vLr~yGNm 100 (151)
T PF02797_consen 86 QLRASREVLREYGNM 100 (151)
T ss_dssp GGHHHHHHHHHH-B-
T ss_pred HHHHHHHHHHhcCCC
Confidence 567899999999997
No 18
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=41.66 E-value=17 Score=19.45 Aligned_cols=54 Identities=9% Similarity=0.063 Sum_probs=35.9
Q ss_pred hHHHHHHHHhhhhhhHHHhhCCCchhhhHhhhCceeeeechhhhhhhhhhhhhHHHHHhhhcc
Q 034910 15 LKAHLIKEVKSHEVAIAELNSLSSSRAVYQKNGNIFFRTTNQKATASEQKHLDVTKRKLEMLN 77 (79)
Q Consensus 15 kk~~L~kevr~heVai~ELnnLp~sRaVYQK~GNlFFrts~q~a~~seQKqLd~aka~l~kl~ 77 (79)
.=.++..-+..|++.|..++.-+.. ....+.++|+.... . .|++....+|++++
T Consensus 13 ~l~~i~~~l~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~-----~-~~~~~l~~~l~~~~ 66 (72)
T cd04878 13 VLNRISGLFARRGFNIESLTVGPTE---DPGISRITIVVEGD-----D-DVIEQIVKQLNKLV 66 (72)
T ss_pred HHHHHHHHHHhCCCCEEEEEeeecC---CCCeEEEEEEEECC-----H-HHHHHHHHHHhCCc
Confidence 3457788888999999888753211 13334577877652 2 67888888888764
No 19
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=37.17 E-value=14 Score=23.06 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=15.9
Q ss_pred hhhhhHHHhhCCCchhhhHhhhC
Q 034910 25 SHEVAIAELNSLSSSRAVYQKNG 47 (79)
Q Consensus 25 ~heVai~ELnnLp~sRaVYQK~G 47 (79)
.+.+.--.|+..+.+.++|+|.|
T Consensus 116 ~~g~~~i~l~~~~~N~~~y~k~G 138 (150)
T PLN02706 116 SAGCYKVILDCSEENKAFYEKCG 138 (150)
T ss_pred HcCCCEEEEEeccccHHHHHHCc
Confidence 33443445566788889999998
No 20
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=36.15 E-value=37 Score=20.39 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=25.7
Q ss_pred chhhhHhhhCceeeeechhhhhhhhhhhhhHHHHHhhhcc
Q 034910 38 SSRAVYQKNGNIFFRTTNQKATASEQKHLDVTKRKLEMLN 77 (79)
Q Consensus 38 ~sRaVYQK~GNlFFrts~q~a~~seQKqLd~aka~l~kl~ 77 (79)
+=..||+.+++. ...++.|.+|.....+|+.|.
T Consensus 30 nm~~~~~~~~~~-------~~~~~~~~~l~es~~ki~~Lr 62 (72)
T cd00089 30 NLLRLYSDEKKK-------KLLAEAEQMLRESKQKLELLK 62 (72)
T ss_pred HHHHHHhcCCCc-------cCHHHHHHHHHHHHHHHHHHH
Confidence 446789988877 567778888888888888775
No 21
>PRK00736 hypothetical protein; Provisional
Probab=36.14 E-value=96 Score=19.14 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=27.7
Q ss_pred hHHHHHHHHhhhhhhHHHhhCCCchhhhHhhhCceeeeechhhhhhhhhhhhhHHHHHhhhc
Q 034910 15 LKAHLIKEVKSHEVAIAELNSLSSSRAVYQKNGNIFFRTTNQKATASEQKHLDVTKRKLEML 76 (79)
Q Consensus 15 kk~~L~kevr~heVai~ELnnLp~sRaVYQK~GNlFFrts~q~a~~seQKqLd~aka~l~kl 76 (79)
+=.+|.-+|--+|-.|.+||. +++.-|+++|.-+.+|+.|
T Consensus 6 Ri~~LE~klafqe~tie~Ln~----------------------~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSD----------------------QLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHH
Confidence 345666777778888888873 4555677777777666655
No 22
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=35.50 E-value=35 Score=22.81 Aligned_cols=39 Identities=31% Similarity=0.310 Sum_probs=27.9
Q ss_pred hhhHhhhCcee-eeechhhhhhhhhhhhhHHHHHhhhccC
Q 034910 40 RAVYQKNGNIF-FRTTNQKATASEQKHLDVTKRKLEMLNI 78 (79)
Q Consensus 40 RaVYQK~GNlF-Frts~q~a~~seQKqLd~aka~l~kl~~ 78 (79)
|.||..-.+.| -...-.....+||.+.+.-+.-+++.++
T Consensus 16 ~~~Y~~~~~k~~~~~~F~~la~~E~~H~~~l~~L~~~~~~ 55 (135)
T cd01048 16 RDVYLALYEKFGGLRPFSNIAESEQRHMDALKTLLERYGL 55 (135)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55666555555 4555567889999999988888877654
No 23
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=32.34 E-value=32 Score=17.11 Aligned_cols=10 Identities=30% Similarity=0.657 Sum_probs=8.4
Q ss_pred hhCceeeeec
Q 034910 45 KNGNIFFRTT 54 (79)
Q Consensus 45 K~GNlFFrts 54 (79)
++|||++.|.
T Consensus 14 ~~G~lWigT~ 23 (24)
T PF07494_consen 14 SDGNLWIGTY 23 (24)
T ss_dssp TTSCEEEEET
T ss_pred CCcCEEEEeC
Confidence 7899999874
No 24
>PF14837 INTS5_N: Integrator complex subunit 5 N-terminus
Probab=31.79 E-value=14 Score=28.00 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=28.1
Q ss_pred hhHHHhhCCCchh-hhHhhhCceeeeechhhhhhhh
Q 034910 28 VAIAELNSLSSSR-AVYQKNGNIFFRTTNQKATASE 62 (79)
Q Consensus 28 Vai~ELnnLp~sR-aVYQK~GNlFFrts~q~a~~se 62 (79)
-+|.=|.++|+.| +||+--|++|...-.......|
T Consensus 30 ~al~lL~~lPaaR~AVley~~~vf~eaV~~~~~~~E 65 (213)
T PF14837_consen 30 CALSLLRSLPAARDAVLEYFGLVFDEAVHLYLSPKE 65 (213)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5888999999999 7999999999876654444444
No 25
>COG3797 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.40 E-value=35 Score=25.72 Aligned_cols=45 Identities=20% Similarity=0.454 Sum_probs=25.1
Q ss_pred HHHHHHhhhhhhHHHhhCCCchhhhHhhhCceeeeechhhhhhhhhhhhhHH
Q 034910 18 HLIKEVKSHEVAIAELNSLSSSRAVYQKNGNIFFRTTNQKATASEQKHLDVT 69 (79)
Q Consensus 18 ~L~kevr~heVai~ELnnLp~sRaVYQK~GNlFFrts~q~a~~seQKqLd~a 69 (79)
=.|.++|+- ..| -++..-|. |--.|||+|.+.-+ ++.-|+ +|+.+
T Consensus 19 V~MAdLka~---~~d-lGf~~v~T-~iaSGNlvf~s~~~-~~el~~-klE~a 63 (178)
T COG3797 19 VVMADLKAA---LTD-LGFANVRT-YIASGNLVFESEAG-AAELEA-KLEAA 63 (178)
T ss_pred EeHHHHHHH---HHH-cCcchhhH-hhhcCCEEEEcCCC-hHHHHH-HHHHH
Confidence 346666631 122 23444444 66689999999988 443333 34443
No 26
>PF02071 NSF: Aromatic-di-Alanine (AdAR) repeat ; InterPro: IPR000744 Regulated exocytosis of neurotransmitters and hormones, as well as intracellular traffic, requires fusion of two lipid bilayers. SNARE proteins are thought to form a protein bridge, the SNARE complex, between an incoming vesicle and the acceptor compartment. SNARE proteins contribute to the specificity of membrane fusion, implying that the mechanisms by which SNAREs are targeted to subcellular compartments are important for specific docking and fusion of vesicles. This mechanism involves a family of conserved proteins, members of which appear to function at all sites of constitutive and regulated secretion in eukaryotes []. Among them are 2 types of cytosolic protein, NSF (N-ethyl-maleimide-sensitive protein) and the SNAPs (alpha-, beta- and gamma-soluble NSF attachment proteins). The yeast vesicular fusion protein, sec17, a cytoplasmic peripheral membrane protein involved in vesicular transport between the endoplasmic reticulum and the golgi apparatus, shows a high degree of sequence similarity to the alpha-SNAP family. SNAP-25 and its non-neuronal homologue Syndet/SNAP-23 are synthesized as soluble proteins in the cytosol. Both SNAP-25 and Syndet/SNAP-23 are palmitoylated at cysteine residues clustered in a loop between two N- and C-terminal coils and palmitoylation is essential for membrane binding and plasma membrane targeting. The C-terminal and the N-terminal helices of SNAP-25, are each targeted to the plasma membrane by two distinct cysteine-rich domains and appear to regulate the availability of SNAP to form complexes with SNARE [].; GO: 0006886 intracellular protein transport
Probab=29.98 E-value=17 Score=16.65 Aligned_cols=9 Identities=22% Similarity=0.660 Sum_probs=6.9
Q ss_pred hHhhhCcee
Q 034910 42 VYQKNGNIF 50 (79)
Q Consensus 42 VYQK~GNlF 50 (79)
-|++-||+|
T Consensus 4 ~y~~Aa~~y 12 (12)
T PF02071_consen 4 CYEKAAECY 12 (12)
T ss_pred HHHHHHhhC
Confidence 578888876
No 27
>PF06970 RepA_N: Replication initiator protein A (RepA) N-terminus; InterPro: IPR010724 This entry represents the N terminus (approximately 80 residues) of replication initiator protein A (RepA), a DNA replication initiator in plasmids []. Most proteins in this entry are bacterial, but archaeal and eukaryotic members are also included.
Probab=28.18 E-value=47 Score=20.98 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=17.6
Q ss_pred hhhhHhhhCceeeeechhhhhh
Q 034910 39 SRAVYQKNGNIFFRTTNQKATA 60 (79)
Q Consensus 39 sRaVYQK~GNlFFrts~q~a~~ 60 (79)
....+-++||+||.=++++...
T Consensus 39 kn~wiDe~G~vYi~~s~eel~~ 60 (76)
T PF06970_consen 39 KNGWIDENGNVYIIFSIEELME 60 (76)
T ss_pred hcCcCCCCCCEEEEeeHHHHHH
Confidence 4457788999999999987653
No 28
>PRK02119 hypothetical protein; Provisional
Probab=27.66 E-value=1.6e+02 Score=18.46 Aligned_cols=40 Identities=25% Similarity=0.236 Sum_probs=27.6
Q ss_pred hHHHHHHHHhhhhhhHHHhhCCCchhhhHhhhCceeeeechhhhhhhhhhhhhHHHHHhhhc
Q 034910 15 LKAHLIKEVKSHEVAIAELNSLSSSRAVYQKNGNIFFRTTNQKATASEQKHLDVTKRKLEML 76 (79)
Q Consensus 15 kk~~L~kevr~heVai~ELnnLp~sRaVYQK~GNlFFrts~q~a~~seQKqLd~aka~l~kl 76 (79)
+=.+|.-++--.|-.|.+||. +++.-|+++|.-++.|..|
T Consensus 10 Ri~~LE~rla~QE~tie~LN~----------------------~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQ----------------------ALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHH
Confidence 445666677778888888873 4556677777777766655
No 29
>PF08020 DUF1706: Protein of unknown function (DUF1706) ; InterPro: IPR012550 This family contains many hypothetical proteins from bacteria and yeast.
Probab=27.34 E-value=87 Score=22.37 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=21.5
Q ss_pred HHHHHHHHh-hhhhhHHHhhCCCchhh
Q 034910 16 KAHLIKEVK-SHEVAIAELNSLSSSRA 41 (79)
Q Consensus 16 k~~L~kevr-~heVai~ELnnLp~sRa 41 (79)
|-||+.+|. ..+-=+.|++++|..+.
T Consensus 7 K~eLl~ai~~~~~kL~~~~~~ipee~~ 33 (166)
T PF08020_consen 7 KAELLEAIEKNYEKLISEIDSIPEEQK 33 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHh
Confidence 889999987 56777889999998763
No 30
>PRK04406 hypothetical protein; Provisional
Probab=27.02 E-value=1.7e+02 Score=18.50 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=26.6
Q ss_pred hHHHHHHHHhhhhhhHHHhhCCCchhhhHhhhCceeeeechhhhhhhhhhhhhHHHHHhhhc
Q 034910 15 LKAHLIKEVKSHEVAIAELNSLSSSRAVYQKNGNIFFRTTNQKATASEQKHLDVTKRKLEML 76 (79)
Q Consensus 15 kk~~L~kevr~heVai~ELnnLp~sRaVYQK~GNlFFrts~q~a~~seQKqLd~aka~l~kl 76 (79)
+=.+|.-+|--.|-.|.+||. +++.-|+++|.-+++|+.|
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~----------------------~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELND----------------------ALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHH
Confidence 345666667777888888873 4555667777666666554
No 31
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.77 E-value=57 Score=17.62 Aligned_cols=55 Identities=13% Similarity=0.213 Sum_probs=34.7
Q ss_pred hHHHHHHHHhhhhhhHHHhhCCCchhhhHhhhCceeeeechhhhhhhhhhhhhHHHHHhhhcc
Q 034910 15 LKAHLIKEVKSHEVAIAELNSLSSSRAVYQKNGNIFFRTTNQKATASEQKHLDVTKRKLEMLN 77 (79)
Q Consensus 15 kk~~L~kevr~heVai~ELnnLp~sRaVYQK~GNlFFrts~q~a~~seQKqLd~aka~l~kl~ 77 (79)
--.++..-+..+++.|..++.-+.. ......+.|.+... ...||+..-.+|++++
T Consensus 13 ~l~~i~~~l~~~~i~I~~~~~~~~~---~~~~~~~~i~~~~~-----~~~~l~~~i~~L~~~~ 67 (79)
T cd04881 13 VLAKITGILAEHGISIESVIQKEAD---GGETAPVVIVTHET-----SEAALNAALAEIEALD 67 (79)
T ss_pred HHHHHHHHHHHcCCCeEEEEEcccC---CCCceeEEEEEccC-----CHHHHHHHHHHHHcCc
Confidence 3457788888899999887653322 11333455555433 3677888888888764
No 32
>PRK13668 hypothetical protein; Provisional
Probab=26.37 E-value=37 Score=26.58 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=27.1
Q ss_pred HHHHHHhhhhhhHHHhhCCCchhhhHhhhCceeeee
Q 034910 18 HLIKEVKSHEVAIAELNSLSSSRAVYQKNGNIFFRT 53 (79)
Q Consensus 18 ~L~kevr~heVai~ELnnLp~sRaVYQK~GNlFFrt 53 (79)
.+..+ ..||.|+.-|..|+....-.+-.||.||.-
T Consensus 139 git~e-~l~e~Al~NLr~l~~~~k~d~v~Gn~~y~~ 173 (267)
T PRK13668 139 GLTEE-QIREMALFNLRSLPTPVKQDEVAGNTFYFL 173 (267)
T ss_pred CCCHH-HHHHHHHHHHHhcccccccceecCceEEEE
Confidence 33444 689999999999999887777779876654
No 33
>PF06412 TraD: Conjugal transfer protein TraD; InterPro: IPR009444 This family consists of a group of TraD conjugal transfer proteins found primarily, though not exclusively, in the alphaproteobacteria [].; GO: 0000746 conjugation
Probab=25.86 E-value=27 Score=21.42 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=17.7
Q ss_pred hHHHhhCCCch-hhhHhhhCceeeee
Q 034910 29 AIAELNSLSSS-RAVYQKNGNIFFRT 53 (79)
Q Consensus 29 ai~ELnnLp~s-RaVYQK~GNlFFrt 53 (79)
.+.|+..=++. +.-|.+.|.-||..
T Consensus 39 ~~~~~~~~~~~~~~~wk~~G~~~f~~ 64 (65)
T PF06412_consen 39 EAAELLDDDPKYRERWKKRGKAFFEA 64 (65)
T ss_pred HHHHhcccChHHHHHHHHHHHHHHcc
Confidence 34555555555 67899999999964
No 34
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=25.47 E-value=32 Score=22.92 Aligned_cols=50 Identities=18% Similarity=0.325 Sum_probs=36.1
Q ss_pred HHHHHHhhhhhhHHHhhCCCc-------hhhhHhhhCceeeeechhhhhhhhhhhhhH
Q 034910 18 HLIKEVKSHEVAIAELNSLSS-------SRAVYQKNGNIFFRTTNQKATASEQKHLDV 68 (79)
Q Consensus 18 ~L~kevr~heVai~ELnnLp~-------sRaVYQK~GNlFFrts~q~a~~seQKqLd~ 68 (79)
++..=++.---+|.+|.+.|+ +...|..+.+=|| ++.+.+...--+|..+
T Consensus 14 ~I~~lL~~A~~ai~~Ls~~~~~~~~~~~~k~~f~~~~~~f~-~~L~~V~~~Lr~qI~~ 70 (117)
T PF10280_consen 14 KIVSLLQHAGQAIQELSNPKSPDQDPESSKEAFESATSEFF-STLSSVEVELRRQIKY 70 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---TGGGHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 344455566678999998777 7899999999888 6677766665555443
No 35
>PF09968 DUF2202: Uncharacterized protein domain (DUF2202); InterPro: IPR019243 This domain, found in various hypothetical archaeal proteins, has no known function.; PDB: 3Q4O_A 3Q4Q_A 3Q4R_A 3Q4N_A.
Probab=24.77 E-value=43 Score=24.45 Aligned_cols=34 Identities=32% Similarity=0.469 Sum_probs=23.2
Q ss_pred hhHhhhCceeeeechhhhhhhhhhhhhHHHHHhhhccC
Q 034910 41 AVYQKNGNIFFRTTNQKATASEQKHLDVTKRKLEMLNI 78 (79)
Q Consensus 41 aVYQK~GNlFFrts~q~a~~seQKqLd~aka~l~kl~~ 78 (79)
.+|.+-| ..--..+..|||.+.|.-+.-|++-++
T Consensus 21 ~l~~~~g----~~~F~NIa~SEq~Hmdav~~Ll~kY~l 54 (162)
T PF09968_consen 21 TLYEKWG----LPIFNNIARSEQRHMDAVKALLEKYGL 54 (162)
T ss_dssp HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHcC----ChHhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455555 344456778999999999998887654
No 36
>PRK00295 hypothetical protein; Provisional
Probab=24.74 E-value=1.8e+02 Score=17.93 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=25.7
Q ss_pred HHHHHHHHhhhhhhHHHhhCCCchhhhHhhhCceeeeechhhhhhhhhhhhhHHHHHhhhc
Q 034910 16 KAHLIKEVKSHEVAIAELNSLSSSRAVYQKNGNIFFRTTNQKATASEQKHLDVTKRKLEML 76 (79)
Q Consensus 16 k~~L~kevr~heVai~ELnnLp~sRaVYQK~GNlFFrts~q~a~~seQKqLd~aka~l~kl 76 (79)
=.+|.-++--.|=.|.+||. +++.-|+++|.-+..|+.|
T Consensus 7 i~~LE~kla~qE~tie~Ln~----------------------~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 7 VTELESRQAFQDDTIQALND----------------------VLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHH
Confidence 34566666677777888873 4555677777777666655
No 37
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=24.46 E-value=1.1e+02 Score=21.94 Aligned_cols=43 Identities=21% Similarity=0.383 Sum_probs=27.9
Q ss_pred hhHHHHHHHHhhhhhhHHHhh--------------CCCchhhhHhhhCceeeeechh
Q 034910 14 DLKAHLIKEVKSHEVAIAELN--------------SLSSSRAVYQKNGNIFFRTTNQ 56 (79)
Q Consensus 14 ~kk~~L~kevr~heVai~ELn--------------nLp~sRaVYQK~GNlFFrts~q 56 (79)
+|-+|--.+||--+|+|.-+| -+-.-.+||.-=||+|..++..
T Consensus 10 ~K~~dtqq~~~~~~vQi~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk~ 66 (114)
T KOG3501|consen 10 EKAVDTQQQLRTIMVQIAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMFMLSDKA 66 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcHH
Confidence 344454555665666555443 3444559999999999988754
No 38
>PRK02793 phi X174 lysis protein; Provisional
Probab=24.34 E-value=1.9e+02 Score=18.03 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=27.0
Q ss_pred hhHHHHHHHHhhhhhhHHHhhCCCchhhhHhhhCceeeeechhhhhhhhhhhhhHHHHHhhhc
Q 034910 14 DLKAHLIKEVKSHEVAIAELNSLSSSRAVYQKNGNIFFRTTNQKATASEQKHLDVTKRKLEML 76 (79)
Q Consensus 14 ~kk~~L~kevr~heVai~ELnnLp~sRaVYQK~GNlFFrts~q~a~~seQKqLd~aka~l~kl 76 (79)
++=.+|.-+|--.|-.|.+||. +++.-|+++|.-++.|+.|
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~----------------------~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNV----------------------TVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHH
Confidence 3445677777778888888873 4555566666666665554
No 39
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=23.95 E-value=43 Score=19.74 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=17.7
Q ss_pred HHHHHHHhhhhhhHHHhhCCCchhhhHhhh
Q 034910 17 AHLIKEVKSHEVAIAELNSLSSSRAVYQKN 46 (79)
Q Consensus 17 ~~L~kevr~heVai~ELnnLp~sRaVYQK~ 46 (79)
.+|..+++.+....+=+ .++.|.||.|.
T Consensus 9 ~eL~~~L~~~G~~~gPI--t~sTR~vy~kk 36 (44)
T smart00540 9 AELRAELKQYGLPPGPI--TDTTRKLYEKK 36 (44)
T ss_pred HHHHHHHHHcCCCCCCc--CcchHHHHHHH
Confidence 35666666665544433 36899999873
No 40
>PTZ00330 acetyltransferase; Provisional
Probab=23.67 E-value=32 Score=21.02 Aligned_cols=13 Identities=31% Similarity=0.378 Sum_probs=10.6
Q ss_pred CCCchhhhHhhhC
Q 034910 35 SLSSSRAVYQKNG 47 (79)
Q Consensus 35 nLp~sRaVYQK~G 47 (79)
.-++++++|+|.|
T Consensus 123 ~n~~a~~~y~k~G 135 (147)
T PTZ00330 123 CTEDMVAFYKKLG 135 (147)
T ss_pred cChHHHHHHHHCC
Confidence 3367899999998
No 41
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=23.26 E-value=62 Score=22.18 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=15.7
Q ss_pred hhhhhhhhhhhhhHHHHHh
Q 034910 55 NQKATASEQKHLDVTKRKL 73 (79)
Q Consensus 55 ~q~a~~seQKqLd~aka~l 73 (79)
+++.+++-+|||+.|..+|
T Consensus 80 V~~Ni~tleKql~~aE~kl 98 (99)
T PF13758_consen 80 VQQNIETLEKQLEAAENKL 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5677888899999988876
No 42
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=22.98 E-value=42 Score=26.17 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=17.9
Q ss_pred HhhCCCchh--hhHhhhCceeeeechhhh
Q 034910 32 ELNSLSSSR--AVYQKNGNIFFRTTNQKA 58 (79)
Q Consensus 32 ELnnLp~sR--aVYQK~GNlFFrts~q~a 58 (79)
=.+|-...| +-|||+|+||..|--+..
T Consensus 40 vI~nnnk~~~i~nnqKngDI~vkti~ldt 68 (220)
T PF10858_consen 40 VINNNNKDRQIKNNQKNGDIFVKTIGLDT 68 (220)
T ss_pred HHHccchhHHHHhhccccceeeeeccccc
Confidence 344444433 569999999987755544
No 43
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification]
Probab=22.95 E-value=56 Score=28.28 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=33.4
Q ss_pred hhhhHHHHHHHHhhhhhhHHHhhCCCchhhhHhhhCceeee
Q 034910 12 ASDLKAHLIKEVKSHEVAIAELNSLSSSRAVYQKNGNIFFR 52 (79)
Q Consensus 12 ~s~kk~~L~kevr~heVai~ELnnLp~sRaVYQK~GNlFFr 52 (79)
.|-+++-|+.-+|+|++.-.=..|--+-|++|+|+ +.|||
T Consensus 318 ~STq~vIl~EfvRa~~I~~di~~n~~~w~~lFek~-DFF~R 357 (552)
T COG5186 318 NSTQHVILMEFVRAHKILSDIERNALDWRRLFEKS-DFFSR 357 (552)
T ss_pred chhhhhHHHHHHHHHHhhhhHhhccccHHHHHHhh-hHHHH
Confidence 56789999999999999888777777889999997 45555
No 44
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ. RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.
Probab=22.12 E-value=33 Score=21.11 Aligned_cols=18 Identities=17% Similarity=0.360 Sum_probs=12.8
Q ss_pred HHhhCCCchhhhHhhhCceeeeec
Q 034910 31 AELNSLSSSRAVYQKNGNIFFRTT 54 (79)
Q Consensus 31 ~ELnnLp~sRaVYQK~GNlFFrts 54 (79)
+|++|++. +.|.+||.-.
T Consensus 5 GeVs~~~~------~~GHvyfsLk 22 (73)
T cd04487 5 GEVVQIKQ------TSGPTIFTLR 22 (73)
T ss_pred EEEecccc------CCCCEEEEEE
Confidence 46777762 7789999753
No 45
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=20.81 E-value=32 Score=22.34 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=12.0
Q ss_pred hhhhHhhhCceeeeech
Q 034910 39 SRAVYQKNGNIFFRTTN 55 (79)
Q Consensus 39 sRaVYQK~GNlFFrts~ 55 (79)
.|-+=+.+|||+|..-.
T Consensus 52 r~~~~~~~G~L~fs~v~ 68 (96)
T cd05727 52 RRFVSQTNGNLYIAKVE 68 (96)
T ss_pred CeEEeCCCCcEEEeecC
Confidence 34455679999998643
No 46
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.59 E-value=84 Score=24.05 Aligned_cols=42 Identities=26% Similarity=0.371 Sum_probs=29.6
Q ss_pred hhhHHHHHH--HHhhhhhhHHHhhCCCchhhhHhhhCceeeeechhhhhhhhhhh
Q 034910 13 SDLKAHLIK--EVKSHEVAIAELNSLSSSRAVYQKNGNIFFRTTNQKATASEQKH 65 (79)
Q Consensus 13 s~kk~~L~k--evr~heVai~ELnnLp~sRaVYQK~GNlFFrts~q~a~~seQKq 65 (79)
++.|.||.. +|-.+|+. ..+...|=+||-||-+++..-++==
T Consensus 116 vGNK~DL~~~R~V~~~ea~-----------~yAe~~gll~~ETSAKTg~Nv~~if 159 (200)
T KOG0092|consen 116 VGNKADLLERREVEFEEAQ-----------AYAESQGLLFFETSAKTGENVNEIF 159 (200)
T ss_pred ecchhhhhhcccccHHHHH-----------HHHHhcCCEEEEEecccccCHHHHH
Confidence 477888877 34444442 3566689999999999988776533
No 47
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=20.58 E-value=59 Score=15.08 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=25.0
Q ss_pred HHHHHHHHhhhhhhHHHhhCCCchhhhHhhhCceeeeechh
Q 034910 16 KAHLIKEVKSHEVAIAELNSLSSSRAVYQKNGNIFFRTTNQ 56 (79)
Q Consensus 16 k~~L~kevr~heVai~ELnnLp~sRaVYQK~GNlFFrts~q 56 (79)
=.++..-+..+.+.|..++..+... ...+.++|.....
T Consensus 12 l~~i~~~l~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~ 49 (60)
T cd02116 12 LAKVLSVLAEAGINITSIEQRTSGD---GGEADIFIVVDGD 49 (60)
T ss_pred HHHHHHHHHHCCCcEEEEEeEEcCC---CCeEEEEEEEech
Confidence 3467777888888888887544322 3456677776654
No 48
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=20.48 E-value=53 Score=28.02 Aligned_cols=20 Identities=45% Similarity=0.579 Sum_probs=15.5
Q ss_pred hHhhhC-ceeeeechhhhhhh
Q 034910 42 VYQKNG-NIFFRTTNQKATAS 61 (79)
Q Consensus 42 VYQK~G-NlFFrts~q~a~~s 61 (79)
|.|-+| ||||.|+++++...
T Consensus 58 v~~crgknlffstdiekai~e 78 (481)
T KOG2666|consen 58 VKQCRGKNLFFSTDIEKAIKE 78 (481)
T ss_pred HHHhcCCceeeecchHHHhhh
Confidence 555444 99999999998753
Done!