BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034912
(79 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DG43|UBTD2_DANRE Ubiquitin domain-containing protein 2 OS=Danio rerio GN=ubtd2 PE=2
SV=1
Length = 240
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 56/79 (70%), Gaps = 4/79 (5%)
Query: 4 RDEFWDTAPHYGGRKEIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERG 59
RDEFWDTAP + GRKEIWDAL+AAA+A D LAQAI+D A + + LT CYDE G
Sbjct: 54 RDEFWDTAPAFEGRKEIWDALKAAAQAFESNDHELAQAIIDGASITLPHGALTECYDELG 113
Query: 60 AKYELPKYVLSEPTNLIRE 78
+Y+LP Y LS P N+I E
Sbjct: 114 NRYQLPVYCLSPPVNMIEE 132
>sp|Q4V8W7|UBTD1_DANRE Ubiquitin domain-containing protein 1 OS=Danio rerio GN=ubtd1 PE=2
SV=1
Length = 227
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 55/79 (69%), Gaps = 4/79 (5%)
Query: 4 RDEFWDTAPHYGGRKEIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERG 59
RDEFWDTAP + GRKEIWDAL+AAA A D LAQAIVD A + + LT CYDE G
Sbjct: 52 RDEFWDTAPAFEGRKEIWDALKAAAVALECSDHELAQAIVDGANITLPHGSLTECYDELG 111
Query: 60 AKYELPKYVLSEPTNLIRE 78
+Y+LP Y L+ P NLI E
Sbjct: 112 NRYQLPVYCLAPPVNLISE 130
>sp|Q6PGH0|UBTD2_MOUSE Ubiquitin domain-containing protein 2 OS=Mus musculus GN=Ubtd2 PE=2
SV=1
Length = 234
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 55/79 (69%), Gaps = 4/79 (5%)
Query: 4 RDEFWDTAPHYGGRKEIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERG 59
RDEFWDTAP + GRKEIWDAL+AAA A D LAQAI+D A + + LT CYDE G
Sbjct: 54 RDEFWDTAPAFEGRKEIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELG 113
Query: 60 AKYELPKYVLSEPTNLIRE 78
+Y+LP Y L+ P N+I E
Sbjct: 114 NRYQLPVYCLAPPINMIEE 132
>sp|Q8WUN7|UBTD2_HUMAN Ubiquitin domain-containing protein 2 OS=Homo sapiens GN=UBTD2 PE=1
SV=2
Length = 234
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 55/79 (69%), Gaps = 4/79 (5%)
Query: 4 RDEFWDTAPHYGGRKEIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERG 59
RDEFWDTAP + GRKEIWDAL+AAA A D LAQAI+D A + + LT CYDE G
Sbjct: 54 RDEFWDTAPAFEGRKEIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELG 113
Query: 60 AKYELPKYVLSEPTNLIRE 78
+Y+LP Y L+ P N+I E
Sbjct: 114 NRYQLPVYCLAPPINMIEE 132
>sp|Q5EAE3|UBTD2_BOVIN Ubiquitin domain-containing protein 2 OS=Bos taurus GN=UBTD2 PE=2
SV=1
Length = 234
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 55/79 (69%), Gaps = 4/79 (5%)
Query: 4 RDEFWDTAPHYGGRKEIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERG 59
RDEFWDTAP + GRKEIWDAL+AAA A D LAQAI+D A + + LT CYDE G
Sbjct: 54 RDEFWDTAPAFEGRKEIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELG 113
Query: 60 AKYELPKYVLSEPTNLIRE 78
+Y+LP Y L+ P N+I E
Sbjct: 114 NRYQLPVYCLAPPINMIEE 132
>sp|Q6GL38|UBTD1_XENTR Ubiquitin domain-containing protein 1 OS=Xenopus tropicalis
GN=ubtd1 PE=2 SV=1
Length = 240
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 55/79 (69%), Gaps = 4/79 (5%)
Query: 4 RDEFWDTAPHYGGRKEIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERG 59
RDEFWDTAP + GRKEIWDAL+AAA A D LAQAIVD A + + LT CYDE G
Sbjct: 55 RDEFWDTAPAFEGRKEIWDALKAAAFAVEANDHELAQAIVDGASITLPHGSLTECYDELG 114
Query: 60 AKYELPKYVLSEPTNLIRE 78
+Y+LP Y L+ P NLI E
Sbjct: 115 TRYQLPVYCLAPPVNLIME 133
>sp|Q640W6|UBTD1_XENLA Ubiquitin domain-containing protein 1 OS=Xenopus laevis GN=ubtd1
PE=2 SV=1
Length = 234
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 55/79 (69%), Gaps = 4/79 (5%)
Query: 4 RDEFWDTAPHYGGRKEIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERG 59
RDEFWDTAP + GRKEIWDAL+AAA A D LAQAI+D A + + LT CYDE G
Sbjct: 54 RDEFWDTAPAFEGRKEIWDALKAAAHAFESNDHELAQAIIDGASITLPHGALTECYDELG 113
Query: 60 AKYELPKYVLSEPTNLIRE 78
+Y+LP Y L+ P N+I E
Sbjct: 114 NRYQLPVYCLAPPINMIEE 132
>sp|Q9HAC8|UBTD1_HUMAN Ubiquitin domain-containing protein 1 OS=Homo sapiens GN=UBTD1 PE=1
SV=1
Length = 227
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 54/79 (68%), Gaps = 4/79 (5%)
Query: 4 RDEFWDTAPHYGGRKEIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERG 59
RDEFWDTAP + GRKEIWDAL+AAA A D LAQAI+D A + + L CYDE G
Sbjct: 51 RDEFWDTAPAFEGRKEIWDALKAAAYAAEANDHELAQAILDGASITLPHGTLCECYDELG 110
Query: 60 AKYELPKYVLSEPTNLIRE 78
+Y+LP Y LS P NL+ E
Sbjct: 111 NRYQLPIYCLSPPVNLLLE 129
>sp|Q91WB7|UBTD1_MOUSE Ubiquitin domain-containing protein 1 OS=Mus musculus GN=Ubtd1 PE=2
SV=1
Length = 227
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 54/79 (68%), Gaps = 4/79 (5%)
Query: 4 RDEFWDTAPHYGGRKEIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERG 59
RDEFWDTAP + GRKEIWDAL+AAA A D LAQAI+D A + + L CYDE G
Sbjct: 51 RDEFWDTAPAFEGRKEIWDALKAAAYAAEANDHELAQAILDGASITLPHGTLCECYDELG 110
Query: 60 AKYELPKYVLSEPTNLIRE 78
+Y+LP Y LS P NL+ E
Sbjct: 111 NRYQLPIYCLSPPVNLLLE 129
>sp|Q3ZBQ1|UBTD1_BOVIN Ubiquitin domain-containing protein 1 OS=Bos taurus GN=UBTD1 PE=2
SV=1
Length = 227
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 54/79 (68%), Gaps = 4/79 (5%)
Query: 4 RDEFWDTAPHYGGRKEIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERG 59
RDEFWDTAP + GRKEIWDAL+AAA A D LAQAI+D A + + L CYDE G
Sbjct: 51 RDEFWDTAPAFEGRKEIWDALKAAAYAAEANDHELAQAILDGASITLPHGTLCECYDELG 110
Query: 60 AKYELPKYVLSEPTNLIRE 78
+Y+LP Y LS P NL+ E
Sbjct: 111 NRYQLPIYCLSPPVNLLLE 129
>sp|Q68FV8|UBTD1_RAT Ubiquitin domain-containing protein 1 OS=Rattus norvegicus GN=Ubtd1
PE=2 SV=1
Length = 227
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 54/79 (68%), Gaps = 4/79 (5%)
Query: 4 RDEFWDTAPHYGGRKEIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERG 59
RDEFWDTAP + GRKEIWDAL+AAA A D LAQAI+D A + + L CYDE G
Sbjct: 51 RDEFWDTAPAFEGRKEIWDALKAAAYAAEANDHELAQAILDGASITLPHGTLCECYDELG 110
Query: 60 AKYELPKYVLSEPTNLIRE 78
+Y+LP Y LS P NL+ E
Sbjct: 111 NRYQLPIYCLSPPVNLLLE 129
>sp|Q9HDW4|YFW7_SCHPO Uncharacterized protein PB2B4.07 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAPB2B4.07 PE=1 SV=1
Length = 239
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 39/77 (50%), Gaps = 11/77 (14%)
Query: 4 RDEFWDTAPHYGGRKEIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTI--------CY 55
R+EFW+T YGG KEIWD L L + ++A + +ADLTI Y
Sbjct: 48 RNEFWETCWAYGGSKEIWDVLHKVVTL---LYEGNAEAATEMALAADLTIPENDISKGVY 104
Query: 56 DERGAKYELPKYVLSEP 72
D +G YE+PK V P
Sbjct: 105 DSKGTFYEIPKIVARIP 121
>sp|Q8TXA7|UPPS_METKA Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific) OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=uppS PE=3 SV=1
Length = 271
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 2 QLRDEFWDTAPHYGGRKEIWDALRAAA 28
+ +D F + A YGGR+EI DA+R A
Sbjct: 159 EYKDRFLNVAVAYGGRQEIIDAVREIA 185
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,630,634
Number of Sequences: 539616
Number of extensions: 850638
Number of successful extensions: 2541
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2515
Number of HSP's gapped (non-prelim): 14
length of query: 79
length of database: 191,569,459
effective HSP length: 50
effective length of query: 29
effective length of database: 164,588,659
effective search space: 4773071111
effective search space used: 4773071111
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)