Query 034912
Match_columns 79
No_of_seqs 89 out of 109
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 07:36:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0013 Uncharacterized conser 100.0 2.4E-34 5.2E-39 215.6 3.8 77 2-78 46-126 (231)
2 KOG0013 Uncharacterized conser 99.7 8.4E-18 1.8E-22 126.6 3.5 76 2-78 154-229 (231)
3 PF15051 FAM198: FAM198 protei 73.8 5.5 0.00012 32.1 4.0 36 5-47 285-323 (326)
4 TIGR03836 termin_org_HMW1 cyta 73.2 2.3 5E-05 28.1 1.5 30 40-74 23-53 (82)
5 PF04298 Zn_peptidase_2: Putat 68.9 6.7 0.00014 29.8 3.3 40 31-70 39-83 (222)
6 PF08004 DUF1699: Protein of u 64.2 5.7 0.00012 28.3 2.1 38 33-70 58-95 (131)
7 COG3571 Predicted hydrolase of 60.2 2.2 4.9E-05 32.4 -0.6 35 42-76 139-173 (213)
8 PF13605 DUF4141: Domain of un 59.1 3.1 6.7E-05 25.6 -0.0 12 66-77 21-32 (55)
9 PF05424 Duffy_binding: Duffy 59.0 5.7 0.00012 27.9 1.3 24 2-30 120-143 (182)
10 PF10414 CysG_dimeriser: Siroh 58.3 6.1 0.00013 23.2 1.2 33 2-41 25-57 (60)
11 cd07233 Glyoxalase_I Glyoxalas 55.3 26 0.00057 21.0 3.7 33 31-63 80-119 (121)
12 PF07011 DUF1313: Protein of u 54.1 21 0.00045 23.9 3.3 23 15-41 2-24 (87)
13 PF13467 RHH_4: Ribbon-helix-h 47.9 29 0.00062 21.8 3.1 22 17-38 19-41 (67)
14 COG2738 Predicted Zn-dependent 45.5 19 0.00041 27.8 2.3 36 31-66 42-82 (226)
15 PF01126 Heme_oxygenase: Heme 45.1 46 0.001 23.0 4.1 36 7-43 155-193 (205)
16 cd08344 MhqB_like_N N-terminal 43.5 46 0.001 20.2 3.5 20 30-49 66-85 (112)
17 PRK14839 undecaprenyl pyrophos 43.4 16 0.00035 27.9 1.7 17 13-29 136-152 (239)
18 PF09498 DUF2388: Protein of u 42.4 18 0.00038 23.5 1.5 10 31-40 62-71 (72)
19 PF03993 DUF349: Domain of Unk 39.7 41 0.00089 19.8 2.8 32 19-50 2-51 (77)
20 PF14908 DUF4496: Domain of un 38.7 36 0.00079 22.7 2.7 48 18-71 2-55 (140)
21 cd08351 ChaP_like ChaP, an enz 37.8 66 0.0014 19.9 3.6 33 31-63 70-117 (123)
22 PRK14837 undecaprenyl pyrophos 36.5 59 0.0013 24.6 3.8 18 13-30 133-150 (230)
23 cd07261 Glo_EDI_BRP_like_11 Th 36.1 73 0.0016 19.0 3.6 19 31-49 72-90 (114)
24 COG2445 Uncharacterized conser 35.6 43 0.00093 23.4 2.7 43 5-50 25-67 (138)
25 TIGR01643 YD_repeat_2x YD repe 34.9 33 0.00072 18.0 1.7 21 43-63 9-30 (42)
26 COG1447 CelC Phosphotransferas 34.9 42 0.00091 23.0 2.5 30 15-44 18-47 (105)
27 PF07559 FlaE: Flagellar basal 34.2 19 0.00041 23.2 0.7 18 53-70 16-33 (130)
28 TIGR00055 uppS undecaprenyl di 33.8 76 0.0016 23.9 4.0 17 13-29 126-142 (226)
29 cd08193 HVD 5-hydroxyvalerate 33.8 38 0.00083 26.1 2.4 32 44-75 129-174 (376)
30 PF02519 Auxin_inducible: Auxi 33.3 19 0.00042 23.8 0.6 30 44-73 34-63 (100)
31 PF01687 Flavokinase: Riboflav 32.8 51 0.0011 22.4 2.7 19 22-40 107-125 (125)
32 PF06849 DUF1246: Protein of u 32.3 9.4 0.0002 26.9 -1.0 36 32-67 56-93 (124)
33 PLN02587 L-galactose dehydroge 31.4 21 0.00046 26.5 0.7 14 6-19 46-60 (314)
34 cd07252 BphC1-RGP6_N_like N-te 31.3 94 0.002 19.1 3.6 33 31-63 70-113 (120)
35 COG0152 PurC Phosphoribosylami 31.3 1.5E+02 0.0032 23.0 5.2 44 18-61 145-188 (247)
36 TIGR01293 Kv_beta voltage-depe 31.1 19 0.00041 26.8 0.4 14 7-20 45-59 (317)
37 cd07242 Glo_EDI_BRP_like_6 Thi 30.9 86 0.0019 19.0 3.3 34 30-63 80-124 (128)
38 TIGR02448 conserverd hypotheti 30.8 49 0.0011 22.7 2.3 10 31-40 91-100 (101)
39 PF04198 Sugar-bind: Putative 30.7 57 0.0012 24.1 2.9 20 21-40 228-255 (255)
40 PRK10625 tas putative aldo-ket 30.6 21 0.00045 27.0 0.5 21 6-28 45-73 (346)
41 PF04439 Adenyl_transf: Strept 30.4 84 0.0018 24.0 3.8 36 14-49 233-268 (282)
42 cd07247 SgaA_N_like N-terminal 29.7 99 0.0021 18.4 3.4 34 31-64 71-112 (114)
43 PF05593 RHS_repeat: RHS Repea 29.5 48 0.0011 17.7 1.8 20 44-63 10-30 (38)
44 cd08189 Fe-ADH5 Iron-containin 29.3 89 0.0019 24.1 3.8 33 44-76 130-177 (374)
45 PF04402 SIMPL: Protein of unk 29.2 74 0.0016 21.5 3.0 25 22-46 128-152 (210)
46 COG0667 Tas Predicted oxidored 28.7 28 0.00061 26.6 0.9 15 6-20 48-63 (316)
47 PLN03090 auxin-responsive fami 28.2 23 0.0005 24.1 0.4 30 44-73 38-67 (104)
48 TIGR00081 purC phosphoribosyla 28.0 1.9E+02 0.0041 21.9 5.3 44 18-61 147-190 (237)
49 PF12645 HTH_16: Helix-turn-he 27.7 23 0.00049 21.7 0.3 41 23-63 3-43 (65)
50 cd08345 Fosfomycin_RP Fosfomyc 27.6 95 0.0021 18.3 3.0 33 31-63 67-107 (113)
51 PF01832 Glucosaminidase: Mann 27.6 92 0.002 20.1 3.1 23 21-43 2-29 (136)
52 cd00475 CIS_IPPS Cis (Z)-Isopr 27.5 1E+02 0.0023 22.9 3.8 17 13-29 127-143 (221)
53 PRK09591 celC cellobiose phosp 27.5 60 0.0013 21.7 2.3 30 15-44 19-48 (104)
54 PRK15418 transcriptional regul 27.4 67 0.0015 24.7 2.8 28 15-42 282-317 (318)
55 PF13276 HTH_21: HTH-like doma 26.9 83 0.0018 17.9 2.6 40 7-47 14-55 (60)
56 TIGR00823 EIIA-LAC phosphotran 26.7 58 0.0013 21.5 2.1 32 15-46 16-47 (99)
57 cd00232 HemeO Heme oxygenase c 26.2 1.2E+02 0.0027 20.8 3.8 29 15-43 158-189 (203)
58 PF01255 Prenyltransf: Putativ 26.0 53 0.0011 24.0 1.9 37 13-52 123-170 (223)
59 cd00215 PTS_IIA_lac PTS_IIA, P 25.9 63 0.0014 21.2 2.1 32 15-46 14-45 (97)
60 PLN03085 nucleobase:cation sym 25.7 1.5E+02 0.0032 22.9 4.3 43 5-49 163-205 (221)
61 PTZ00176 erythrocyte membrane 25.6 28 0.0006 32.7 0.5 23 2-29 623-645 (1317)
62 PF10875 DUF2670: Protein of u 25.2 46 0.001 23.9 1.5 26 31-56 60-87 (139)
63 COG2968 Uncharacterized conser 25.1 88 0.0019 24.2 3.1 27 20-46 163-189 (243)
64 cd07265 2_3_CTD_N N-terminal d 25.1 1.1E+02 0.0024 18.5 3.1 33 31-63 74-115 (122)
65 PRK14836 undecaprenyl pyrophos 25.0 1.3E+02 0.0028 22.9 4.0 17 13-29 141-157 (253)
66 cd09013 BphC-JF8_N_like N-term 24.7 1.1E+02 0.0024 18.6 3.0 18 30-47 74-91 (121)
67 cd07235 MRD Mitomycin C resist 24.6 1.1E+02 0.0023 18.5 2.9 17 31-47 79-95 (122)
68 PRK14832 undecaprenyl pyrophos 24.6 1.3E+02 0.0028 23.1 3.9 17 13-29 145-161 (253)
69 PHA00435 capsid assembly prote 24.6 74 0.0016 25.6 2.6 16 31-46 228-243 (306)
70 PRK14840 undecaprenyl pyrophos 24.5 1.3E+02 0.0028 23.0 3.9 17 13-29 149-165 (250)
71 cd07885 RHD-n_RelA N-terminal 24.3 61 0.0013 23.9 2.0 18 55-73 148-165 (169)
72 PRK14831 undecaprenyl pyrophos 24.2 1.3E+02 0.0029 22.8 3.9 17 13-29 147-163 (249)
73 cd08510 PBP2_Lactococcal_OppA_ 24.1 1.1E+02 0.0025 23.9 3.6 34 31-65 342-375 (516)
74 cd07238 Glo_EDI_BRP_like_5 Thi 23.9 1.6E+02 0.0036 17.4 3.6 18 31-48 67-84 (112)
75 PRK14827 undecaprenyl pyrophos 23.9 1.4E+02 0.003 23.5 4.0 17 13-29 194-210 (296)
76 cd01612 APG12_C Ubiquitin-like 23.7 14 0.00029 23.9 -1.4 14 50-63 65-78 (87)
77 COG0020 UppS Undecaprenyl pyro 23.4 1.3E+02 0.0028 23.0 3.7 38 13-52 143-191 (245)
78 PF12714 TILa: TILa domain 23.3 44 0.00095 19.7 0.9 19 53-71 1-19 (56)
79 PLN03086 PRLI-interacting fact 23.2 72 0.0016 27.3 2.5 35 36-71 68-103 (567)
80 cd08490 PBP2_NikA_DppA_OppA_li 23.1 87 0.0019 23.8 2.7 32 31-65 293-324 (470)
81 PRK12302 bssR biofilm formatio 23.0 1.3E+02 0.0028 21.3 3.3 19 16-35 64-82 (127)
82 PRK04101 fosfomycin resistance 23.0 53 0.0011 21.0 1.3 47 30-76 74-128 (139)
83 cd08520 PBP2_NikA_DppA_OppA_li 22.9 89 0.0019 24.0 2.7 20 31-50 303-322 (468)
84 PF09039 HTH_Tnp_Mu_2: Mu DNA 22.6 1.5E+02 0.0033 19.8 3.5 34 15-48 30-71 (108)
85 PRK10240 undecaprenyl pyrophos 22.5 1.7E+02 0.0036 22.1 4.1 17 13-29 120-136 (229)
86 PRK12607 phosphoribosylaminoim 22.5 2.4E+02 0.0051 22.5 5.1 43 18-60 168-210 (313)
87 PF12949 HeH: HeH/LEM domain; 22.5 55 0.0012 18.2 1.2 17 34-50 8-24 (35)
88 PF07554 FIVAR: Uncharacterise 22.5 1.3E+02 0.0029 16.3 2.8 22 17-42 17-38 (51)
89 PRK13277 5-formaminoimidazole- 22.4 56 0.0012 26.5 1.6 36 32-67 76-113 (366)
90 PRK10376 putative oxidoreducta 22.2 38 0.00082 25.0 0.6 14 6-19 55-69 (290)
91 PRK10454 PTS system N,N'-diace 22.1 1E+02 0.0023 21.0 2.7 31 15-45 30-60 (115)
92 PRK09912 L-glyceraldehyde 3-ph 22.0 30 0.00065 26.3 0.0 15 6-20 58-75 (346)
93 cd08350 BLMT_like BLMT, a bleo 21.7 1.5E+02 0.0032 18.0 3.2 34 31-64 68-116 (120)
94 PF00039 fn1: Fibronectin type 21.6 44 0.00096 18.7 0.7 12 54-65 1-13 (39)
95 cd01414 SAICAR_synt_Sc non-met 21.5 2.8E+02 0.0061 21.4 5.2 44 18-61 162-205 (279)
96 PF08350 DUF1724: Domain of un 21.4 98 0.0021 18.8 2.2 27 43-71 15-42 (64)
97 cd07266 HPCD_N_class_II N-term 21.3 1.4E+02 0.0031 17.9 3.0 35 30-64 72-115 (121)
98 cd08357 Glo_EDI_BRP_like_18 Th 21.3 1.7E+02 0.0037 17.4 3.3 35 30-64 76-122 (125)
99 PF03793 PASTA: PASTA domain; 21.1 1.1E+02 0.0024 17.2 2.3 17 31-47 10-26 (63)
100 PRK11087 oxidative stress defe 20.9 1.2E+02 0.0027 22.1 3.0 33 23-57 153-186 (231)
101 COG2390 DeoR Transcriptional r 20.9 1E+02 0.0022 24.3 2.7 27 16-42 286-320 (321)
102 cd08518 PBP2_NikA_DppA_OppA_li 20.8 1.1E+02 0.0024 23.5 2.9 30 31-63 298-327 (464)
103 KOG1404 Alanine-glyoxylate ami 20.3 74 0.0016 26.8 1.9 21 42-62 32-52 (442)
104 PF14134 DUF4301: Domain of un 20.2 54 0.0012 28.0 1.1 35 34-68 419-453 (513)
105 PRK14829 undecaprenyl pyrophos 20.0 1.8E+02 0.004 21.9 3.9 17 13-29 141-157 (243)
No 1
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.4e-34 Score=215.58 Aligned_cols=77 Identities=57% Similarity=0.953 Sum_probs=73.1
Q ss_pred hhhhhhhccCCCCCCcHHHHHHHHHHHHh----cHHHHHHHHHHcCceeecCCeeeeeccCCCccccCceeeeCCCCccc
Q 034912 2 QLRDEFWDTAPHYGGRKEIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIR 77 (79)
Q Consensus 2 ~~R~EFwdT~p~~~Gr~EIW~aLraA~e~----d~~tAq~ildaA~itlp~g~L~~~YDe~G~~Y~lP~~vis~P~N~~~ 77 (79)
.||+|||||+|+|+||+|||||||+|.-+ |.+.||+|+|+|+||+|+|+|+.|||++|+.|.+|.||++-|.|++.
T Consensus 46 skRdEFWdTapAf~GrKEIWDaL~aa~ta~e~~d~e~Aqai~dgA~~tiP~g~l~ecydelg~~y~~p~ycls~p~n~~~ 125 (231)
T KOG0013|consen 46 SKRDEFWDTAPAFGGRKEIWDALHAAVTAAEEGDAEAAQAILDGADLTIPEGDLSECYDELGGTYYEPIYCLSRPPNAFA 125 (231)
T ss_pred hhhhhhhhcccccCCcHHHHHHHHHHHHHHhcccHHHHHHHHhccccccCCcchHHHHHhhCCeEeecceeeccCchHHH
Confidence 48999999999999999999999998753 99999999999999999999999999999999999999999999875
Q ss_pred C
Q 034912 78 E 78 (79)
Q Consensus 78 ~ 78 (79)
+
T Consensus 126 E 126 (231)
T KOG0013|consen 126 E 126 (231)
T ss_pred h
Confidence 3
No 2
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=8.4e-18 Score=126.58 Aligned_cols=76 Identities=47% Similarity=0.700 Sum_probs=73.4
Q ss_pred hhhhhhhccCCCCCCcHHHHHHHHHHHHhcHHHHHHHHHHcCceeecCCeeeeeccCCCccccCceeeeCCCCcccC
Q 034912 2 QLRDEFWDTAPHYGGRKEIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 78 (79)
Q Consensus 2 ~~R~EFwdT~p~~~Gr~EIW~aLraA~e~d~~tAq~ildaA~itlp~g~L~~~YDe~G~~Y~lP~~vis~P~N~~~~ 78 (79)
+.|++||+|.|+++|..|||.+||+|.+.| ..+|.|+.++++.+-+-+|+.|||+.|.+|.||.+|+++|.|+...
T Consensus 154 tT~~d~~lta~~~Dtv~eik~~L~Aaeg~D-~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqviVlq~~~Nl~~q 229 (231)
T KOG0013|consen 154 TTREDFWLTAPHYDTVGEIKRALRAAEGVD-PLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVIVLQEPKNLSPQ 229 (231)
T ss_pred hhhhheeecccCcCcHHHHHHHHHHhhccc-hhhheeeccCCceeccccceeeeecCCCEEEEEEEeccCCCCCCCC
Confidence 579999999999999999999999999899 9999999999999999999999999999999999999999999864
No 3
>PF15051 FAM198: FAM198 protein
Probab=73.85 E-value=5.5 Score=32.12 Aligned_cols=36 Identities=28% Similarity=0.565 Sum_probs=26.5
Q ss_pred hhhhccCCCCCCcHHHHHHHHHHHHhcHHHHHH---HHHHcCceee
Q 034912 5 DEFWDTAPHYGGRKEIWDALRAAAEADLSLAQA---IVDSAGVIVQ 47 (79)
Q Consensus 5 ~EFwdT~p~~~Gr~EIW~aLraA~e~d~~tAq~---ildaA~itlp 47 (79)
.+|||++ ||++-|...|... | .-||. -|++.|++|-
T Consensus 285 ~~~WeSq---GG~~Gi~~li~~i-e---~R~kiLl~yi~~h~~~~~ 323 (326)
T PF15051_consen 285 QVFWESQ---GGRQGIEKLIDVI-E---RRAKILLTYINAHGLKVL 323 (326)
T ss_pred hhHhhhc---CchhhHHHHHHHH-H---HHHHHHHHHHHHcCCeec
Confidence 5899999 9999999888765 2 23333 3578888874
No 4
>TIGR03836 termin_org_HMW1 cytadherence high molecular weight protein 1 N-terminal region. This model describes the N-terminal region of the Mycoplasma cytadherence protein HMW1, up to but not including the first EAGR box domain. The apparent orthologs in different Mycoplasma species differ profoundly in archictecture C-terminally to the region described here.
Probab=73.21 E-value=2.3 Score=28.11 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=22.5
Q ss_pred HHcCceee-cCCeeeeeccCCCccccCceeeeCCCC
Q 034912 40 DSAGVIVQ-SADLTICYDERGAKYELPKYVLSEPTN 74 (79)
Q Consensus 40 daA~itlp-~g~L~~~YDe~G~~Y~lP~~vis~P~N 74 (79)
|++ .+|| .|++.++||..||-|- +.-+|.+
T Consensus 23 DGk-~tv~eDg~ikvAyDaDgNgYY----Iafn~Et 53 (82)
T TIGR03836 23 DGK-GTVPEDGSIKVAYDADGNGYY----IAFNPET 53 (82)
T ss_pred cCc-cccCCCCcEEEEEecCCCEEE----EEecCCC
Confidence 444 4777 8999999999999985 4445544
No 5
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=68.88 E-value=6.7 Score=29.83 Aligned_cols=40 Identities=28% Similarity=0.364 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHcCce-----eecCCeeeeeccCCCccccCceeee
Q 034912 31 DLSLAQAIVDSAGVI-----VQSADLTICYDERGAKYELPKYVLS 70 (79)
Q Consensus 31 d~~tAq~ildaA~it-----lp~g~L~~~YDe~G~~Y~lP~~vis 70 (79)
--+.|+.|||..||. ...|.|+..||-.-+--+|-+-+.+
T Consensus 39 Gae~Ar~iL~~~gl~~V~Ve~~~G~LtDHYdP~~k~vrLS~~vy~ 83 (222)
T PF04298_consen 39 GAEVARHILDRNGLSDVRVERVPGELTDHYDPRNKVVRLSEDVYN 83 (222)
T ss_pred HHHHHHHHHHHCCCCCeeEEEeCCCCCCCcCCCCCEEEeCCccCC
Confidence 368899999999983 3359999999998887776655544
No 6
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=64.17 E-value=5.7 Score=28.35 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCceeecCCeeeeeccCCCccccCceeee
Q 034912 33 SLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLS 70 (79)
Q Consensus 33 ~tAq~ildaA~itlp~g~L~~~YDe~G~~Y~lP~~vis 70 (79)
..+|..|+-.||.|-.||.+|---..-.+|.+|..++.
T Consensus 58 ksi~mfL~mqgI~LleGDVwGHRKDinEYy~i~~~vi~ 95 (131)
T PF08004_consen 58 KSIKMFLEMQGIELLEGDVWGHRKDINEYYEIPESVIE 95 (131)
T ss_pred HHHHHHHHhcCceeeccccccccCCCcccccCCHHHHH
Confidence 45788999999999999998765557788888877654
No 7
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=60.24 E-value=2.2 Score=32.36 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=31.6
Q ss_pred cCceeecCCeeeeeccCCCccccCceeeeCCCCcc
Q 034912 42 AGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI 76 (79)
Q Consensus 42 A~itlp~g~L~~~YDe~G~~Y~lP~~vis~P~N~~ 76 (79)
+||..|+=-.++.-|+.|++=++-.|.+|+|+.++
T Consensus 139 ~gl~tPtli~qGtrD~fGtr~~Va~y~ls~~iev~ 173 (213)
T COG3571 139 TGLKTPTLITQGTRDEFGTRDEVAGYALSDPIEVV 173 (213)
T ss_pred cCCCCCeEEeecccccccCHHHHHhhhcCCceEEE
Confidence 58888887677999999999999999999999886
No 8
>PF13605 DUF4141: Domain of unknown function (DUF4141)
Probab=59.07 E-value=3.1 Score=25.61 Aligned_cols=12 Identities=33% Similarity=0.833 Sum_probs=10.0
Q ss_pred ceeeeCCCCccc
Q 034912 66 KYVLSEPTNLIR 77 (79)
Q Consensus 66 ~~vis~P~N~~~ 77 (79)
.|++.||.|+.+
T Consensus 21 QWvV~DP~NlAQ 32 (55)
T PF13605_consen 21 QWVVTDPGNLAQ 32 (55)
T ss_pred EEEEeCchHHHH
Confidence 589999999864
No 9
>PF05424 Duffy_binding: Duffy binding domain; InterPro: IPR008602 This family contains several Plasmodium Duffy binding proteins. Plasmodium vivax and Plasmodium knowlesi merozoites invade Homo sapiens erythrocytes that express Duffy blood group surface determinants. The Duffy receptor family is localised in micronemes, an organelle found in all organisms of the phylum Apicomplexa [].; GO: 0004872 receptor activity, 0009405 pathogenesis, 0016021 integral to membrane; PDB: 2WAU_B 3CML_A 3CPZ_A 3BQL_A 3BQK_A 3BQI_A 3RRC_B 2XU0_A 2YK0_A 2C6J_A ....
Probab=59.03 E-value=5.7 Score=27.92 Aligned_cols=24 Identities=38% Similarity=0.901 Sum_probs=20.3
Q ss_pred hhhhhhhccCCCCCCcHHHHHHHHHHHHh
Q 034912 2 QLRDEFWDTAPHYGGRKEIWDALRAAAEA 30 (79)
Q Consensus 2 ~~R~EFwdT~p~~~Gr~EIW~aLraA~e~ 30 (79)
+.|++||+.- ++.||.|+--|+..
T Consensus 120 ~~Re~WW~~n-----r~~IWkaM~C~l~~ 143 (182)
T PF05424_consen 120 KLREDWWEEN-----RKHIWKAMICALTY 143 (182)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHh-----HHHhhcceecCCCC
Confidence 4699999976 88999999988764
No 10
>PF10414 CysG_dimeriser: Sirohaem synthase dimerisation region; InterPro: IPR019478 Bacterial sulphur metabolism depends on the iron-containing porphinoid sirohaem. CysG is a multi-functional enzyme with S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase, dehydrogenase and ferrochelatase activities. CysG synthesizes sirohaem from uroporphyrinogen III via reactions which encompass two branchpoint intermediates in tetrapyrrole biosynthesis, diverting flux first from protoporphyrin IX biosynthesis and then from cobalamin (vitamin B12) biosynthesis. CysG is a dimer. Its dimerisation region is 74 residues long, and acts to hold the two structurally similar protomers held together asymmetrically through a number of salt-bridges across complementary residues within the dimerisation region []. CysG dimerisation produces a series of active sites, accounting for CysG's multi-functionality, catalysing four diverse reactions: Two SAM-dependent methylations NAD+-dependent tetrapyrrole dehydrogenation Metal chelation ; GO: 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1PJT_A 1PJS_A 1PJQ_A.
Probab=58.34 E-value=6.1 Score=23.18 Aligned_cols=33 Identities=21% Similarity=0.467 Sum_probs=19.5
Q ss_pred hhhhhhhccCCCCCCcHHHHHHHHHHHHhcHHHHHHHHHH
Q 034912 2 QLRDEFWDTAPHYGGRKEIWDALRAAAEADLSLAQAIVDS 41 (79)
Q Consensus 2 ~~R~EFwdT~p~~~Gr~EIW~aLraA~e~d~~tAq~ilda 41 (79)
.+|..||++- +.| .+-+ .....+.+.|+.+|+.
T Consensus 25 ~~RR~FWe~~--~~g--~~~~---~~~~g~~~~A~~~l~~ 57 (60)
T PF10414_consen 25 AERRRFWERF--FDG--PFAE---LVLAGDEEEAEALLEQ 57 (60)
T ss_dssp HHHHHHHHHH--T-H--HHHH---HHHTT-HHHHHHHHHH
T ss_pred hHHHHHHHHH--HcC--HHHH---HHHCCCHHHHHHHHHH
Confidence 4677888888 644 3333 3334577777777764
No 11
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=55.26 E-value=26 Score=20.96 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHcCceeecC-------CeeeeeccCCCccc
Q 034912 31 DLSLAQAIVDSAGVIVQSA-------DLTICYDERGAKYE 63 (79)
Q Consensus 31 d~~tAq~ildaA~itlp~g-------~L~~~YDe~G~~Y~ 63 (79)
|++.+..-|.++|+++-.+ .+.-.+|-.|++.+
T Consensus 80 did~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DpdG~~iE 119 (121)
T cd07233 80 DVYAACERLEEMGVEVTKPPGDGGMKGIAFIKDPDGYWIE 119 (121)
T ss_pred CHHHHHHHHHHCCCEEeeCCccCCCceEEEEECCCCCEEE
Confidence 7888888888999987643 22234555555544
No 12
>PF07011 DUF1313: Protein of unknown function (DUF1313); InterPro: IPR009741 This family consists of several hypothetical plant proteins of around 100 residues in length. The function of this family is unknown.
Probab=54.12 E-value=21 Score=23.92 Aligned_cols=23 Identities=22% Similarity=0.615 Sum_probs=17.2
Q ss_pred CCcHHHHHHHHHHHHhcHHHHHHHHHH
Q 034912 15 GGRKEIWDALRAAAEADLSLAQAIVDS 41 (79)
Q Consensus 15 ~Gr~EIW~aLraA~e~d~~tAq~ilda 41 (79)
+|..++|+++..- +..+|.|||-
T Consensus 2 ~~d~~~~~tf~~s----F~qVQ~iLDq 24 (87)
T PF07011_consen 2 QGDGKVWQTFQKS----FVQVQSILDQ 24 (87)
T ss_pred CccHHHHHHHHHH----HHHHHHHHHH
Confidence 5788999999765 5666777764
No 13
>PF13467 RHH_4: Ribbon-helix-helix domain; PDB: 3KK4_C.
Probab=47.92 E-value=29 Score=21.78 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=14.6
Q ss_pred cHHHHHHHHHHHHh-cHHHHHHH
Q 034912 17 RKEIWDALRAAAEA-DLSLAQAI 38 (79)
Q Consensus 17 r~EIW~aLraA~e~-d~~tAq~i 38 (79)
.++.|++|+..++. .+.+++-|
T Consensus 19 E~~FW~~L~eiA~~~g~s~~~li 41 (67)
T PF13467_consen 19 EPAFWDALEEIAAREGLSLNALI 41 (67)
T ss_dssp EHHHHHHHHHHHHHTT--HHHHH
T ss_pred hHHHHHHHHHHHHHcCCCHHHHH
Confidence 47899999998875 45444433
No 14
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=45.53 E-value=19 Score=27.79 Aligned_cols=36 Identities=28% Similarity=0.368 Sum_probs=28.2
Q ss_pred cHHHHHHHHHHcCce-----eecCCeeeeeccCCCccccCc
Q 034912 31 DLSLAQAIVDSAGVI-----VQSADLTICYDERGAKYELPK 66 (79)
Q Consensus 31 d~~tAq~ildaA~it-----lp~g~L~~~YDe~G~~Y~lP~ 66 (79)
--+.|+.|||..|+. ...|+|+.-||..-.--+|-+
T Consensus 42 GaevAr~iLd~nGl~dV~Ve~v~G~LTDHYDP~~kvvrLSe 82 (226)
T COG2738 42 GAEVARMILDENGLYDVPVEEVPGTLTDHYDPRRKVVRLSE 82 (226)
T ss_pred HHHHHHHHHhhcCCccceeeeecCCcccccChhhheeeccc
Confidence 578999999999984 335999999998766655543
No 15
>PF01126 Heme_oxygenase: Heme oxygenase; InterPro: IPR016053 Haem oxygenase (1.14.99.3 from EC) (HO) [] is the microsomal enzyme that, in animals, carries out the oxidation of haem, it cleaves the haem ring at the alpha-methene bridge to form biliverdin and carbon monoxide []. Biliverdin is subsequently converted to bilirubin by biliverdin reductase. In mammals there are three isozymes of haem oxygenase: HO-1 to HO-3. The first two isozymes differ in their tissue expression and their inducibility: HO-1 is highly inducible by its substrate haem and by various non-haem substances, while HO-2 is non-inducible. It has been suggested [] that HO-2 could be implicated in the production of carbon monoxide in the brain where it is said to act as a neurotransmitter. In the genome of the chloroplast of red algae as well as in cyanobacteria, there is a haem oxygenase (gene pbsA) that is the key enzyme in the synthesis of the chromophoric part of the photosynthetic antennae []. A haem oxygenase is also present in the bacteria Corynebacterium diphtheriae (gene hmuO), where it is involved in the acquisition of iron from the host haem []. There is, in the central section of these enzymes, a well-conserved region centred on a histidine residue.; GO: 0004392 heme oxygenase (decyclizing) activity, 0006788 heme oxidation, 0055114 oxidation-reduction process; PDB: 1J77_A 1P3U_A 1P3V_A 1P3T_A 1WNW_B 1WNX_B 1IW1_B 1WNV_C 1V8X_A 1WZG_B ....
Probab=45.11 E-value=46 Score=23.01 Aligned_cols=36 Identities=25% Similarity=0.425 Sum_probs=25.2
Q ss_pred hhccCCCCCCcHHHHHHHHHHHHh---cHHHHHHHHHHcC
Q 034912 7 FWDTAPHYGGRKEIWDALRAAAEA---DLSLAQAIVDSAG 43 (79)
Q Consensus 7 FwdT~p~~~Gr~EIW~aLraA~e~---d~~tAq~ildaA~ 43 (79)
||.-.. +.++...|...++++++ +.+.-+.||++|.
T Consensus 155 f~~~~~-~~~~~~~w~~f~~~l~~~~l~~~~~~~ii~~A~ 193 (205)
T PF01126_consen 155 FFSFGG-IEDTGALWRAFRAALDAAALTEEERDEIIEEAK 193 (205)
T ss_dssp GGH-TT-SSSHHHHHHHHHHHHHHS---HHHHHHHHHHHH
T ss_pred ccCCCC-cccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 555441 34899999999999875 5566778887764
No 16
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=43.49 E-value=46 Score=20.20 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=16.4
Q ss_pred hcHHHHHHHHHHcCceeecC
Q 034912 30 ADLSLAQAIVDSAGVIVQSA 49 (79)
Q Consensus 30 ~d~~tAq~ildaA~itlp~g 49 (79)
.|++.+..-|.++||++..+
T Consensus 66 ~d~~~~~~~l~~~Gi~~~~~ 85 (112)
T cd08344 66 DDFAAFARHLEAAGVALAAA 85 (112)
T ss_pred hhHHHHHHHHHHcCCceecC
Confidence 47888999999999987544
No 17
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=43.35 E-value=16 Score=27.86 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHHHH
Q 034912 13 HYGGRKEIWDALRAAAE 29 (79)
Q Consensus 13 ~~~Gr~EIW~aLraA~e 29 (79)
+|+||.||-+|.+..+.
T Consensus 136 ~Yggr~EI~~A~k~~~~ 152 (239)
T PRK14839 136 DYSARDAILAAAAKALG 152 (239)
T ss_pred cCCCHHHHHHHHHHhcC
Confidence 59999999999998753
No 18
>PF09498 DUF2388: Protein of unknown function (DUF2388); InterPro: IPR012661 This family consists of small hypothetical proteins, about 100 amino acids in length. The family includes five members (three in tandem) in Pseudomonas aeruginosa PAO1, and also in Pseudomonas putida (strain KT2440), four in Pseudomonas syringae pv. tomato str. DC3000, and single members in several other Proteobacteria. The function is unknown.
Probab=42.35 E-value=18 Score=23.45 Aligned_cols=10 Identities=70% Similarity=0.863 Sum_probs=9.0
Q ss_pred cHHHHHHHHH
Q 034912 31 DLSLAQAIVD 40 (79)
Q Consensus 31 d~~tAq~ild 40 (79)
|+++||+||-
T Consensus 62 D~~LA~AILa 71 (72)
T PF09498_consen 62 DLQLAQAILA 71 (72)
T ss_pred HHHHHHHHHc
Confidence 9999999983
No 19
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=39.68 E-value=41 Score=19.76 Aligned_cols=32 Identities=34% Similarity=0.704 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHh------------------cHHHHHHHHHHcCceeecCC
Q 034912 19 EIWDALRAAAEA------------------DLSLAQAIVDSAGVIVQSAD 50 (79)
Q Consensus 19 EIW~aLraA~e~------------------d~~tAq~ildaA~itlp~g~ 50 (79)
++|...++||+. .++.-++||+.+.=.+.+.+
T Consensus 2 ~Lw~~F~~a~~~~~~~~~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d 51 (77)
T PF03993_consen 2 ELWKRFRAACDAFFDRRKEFFEEQDAEREENLEKKEALIEEAEALAESED 51 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 578888888862 47777788877765555554
No 20
>PF14908 DUF4496: Domain of unknown function (DUF4496)
Probab=38.72 E-value=36 Score=22.67 Aligned_cols=48 Identities=27% Similarity=0.448 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHcCceeec-CCee--eeeccCCC---ccccCceeeeC
Q 034912 18 KEIWDALRAAAEADLSLAQAIVDSAGVIVQS-ADLT--ICYDERGA---KYELPKYVLSE 71 (79)
Q Consensus 18 ~EIW~aLraA~e~d~~tAq~ildaA~itlp~-g~L~--~~YDe~G~---~Y~lP~~vis~ 71 (79)
..||+++..=++. .+....|+.+|+ |.++ ..=+..|+ .-+-|.|++++
T Consensus 2 ~~vW~a~~~~i~~------qL~~~kgV~Ip~fGtFtf~~~~~~~~~~~~~~~rPvF~l~~ 55 (140)
T PF14908_consen 2 ERVWNALSEYIER------QLSLGKGVSIPGFGTFTFSRQKVDSGGNKNQIRRPVFVLSE 55 (140)
T ss_pred HHHHHHHHHHHHH------HHhcCCCEEeCCCcEEEEEEEeeccCCccccccceEEEECH
Confidence 3689999887654 455667999987 6666 23333333 66778888765
No 21
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=37.75 E-value=66 Score=19.86 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHcCcee---ecC-----------Ce-eeeeccCCCccc
Q 034912 31 DLSLAQAIVDSAGVIV---QSA-----------DL-TICYDERGAKYE 63 (79)
Q Consensus 31 d~~tAq~ildaA~itl---p~g-----------~L-~~~YDe~G~~Y~ 63 (79)
|++.+..-|.++|+++ |.. -- .-++|-.||..+
T Consensus 70 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iE 117 (123)
T cd08351 70 EFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLE 117 (123)
T ss_pred HHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEE
Confidence 6888888889999986 221 11 257788887776
No 22
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=36.50 E-value=59 Score=24.61 Aligned_cols=18 Identities=39% Similarity=0.680 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 034912 13 HYGGRKEIWDALRAAAEA 30 (79)
Q Consensus 13 ~~~Gr~EIW~aLraA~e~ 30 (79)
+|+||.||=+|.|..+..
T Consensus 133 ~Yggr~EI~~A~~~~~~~ 150 (230)
T PRK14837 133 NYGGRNEIVRAVKKFLSS 150 (230)
T ss_pred cCCCHHHHHHHHHHHHhc
Confidence 599999999999988753
No 23
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=36.10 E-value=73 Score=19.01 Aligned_cols=19 Identities=16% Similarity=0.106 Sum_probs=13.8
Q ss_pred cHHHHHHHHHHcCceeecC
Q 034912 31 DLSLAQAIVDSAGVIVQSA 49 (79)
Q Consensus 31 d~~tAq~ildaA~itlp~g 49 (79)
+++.+.+=+.++|+++..+
T Consensus 72 ~~~~~~~~~~~~g~~v~~~ 90 (114)
T cd07261 72 AVDALYAEWQAKGVKIIQE 90 (114)
T ss_pred HHHHHHHHHHHCCCeEecC
Confidence 5667777777899887653
No 24
>COG2445 Uncharacterized conserved protein [Function unknown]
Probab=35.65 E-value=43 Score=23.41 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=33.6
Q ss_pred hhhhccCCCCCCcHHHHHHHHHHHHhcHHHHHHHHHHcCceeecCC
Q 034912 5 DEFWDTAPHYGGRKEIWDALRAAAEADLSLAQAIVDSAGVIVQSAD 50 (79)
Q Consensus 5 ~EFwdT~p~~~Gr~EIW~aLraA~e~d~~tAq~ildaA~itlp~g~ 50 (79)
.|||+|- ..+--+=-+|..|+|+-++.+..+++..|...|...
T Consensus 25 ~e~~~~~---~~~~av~~~lq~~ies~~Di~~~li~~~~~~~p~~y 67 (138)
T COG2445 25 VEFLKSK---HERYAVERILQVAIESLIDIGNMLISKFGLRDPGTY 67 (138)
T ss_pred HHhhccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCH
Confidence 3778876 555556667777888899999999999999887654
No 25
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=34.93 E-value=33 Score=18.03 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=15.7
Q ss_pred CceeecCCee-eeeccCCCccc
Q 034912 43 GVIVQSADLT-ICYDERGAKYE 63 (79)
Q Consensus 43 ~itlp~g~L~-~~YDe~G~~Y~ 63 (79)
.++-|.|.-. -.||..|+.-.
T Consensus 9 ~~~~p~G~~~~~~YD~~Grl~~ 30 (42)
T TIGR01643 9 GSTDADGTTTRYTYDAAGRLVE 30 (42)
T ss_pred EEECCCCCEEEEEECCCCCEEE
Confidence 3677888664 89999998743
No 26
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=34.85 E-value=42 Score=22.95 Aligned_cols=30 Identities=30% Similarity=0.508 Sum_probs=25.0
Q ss_pred CCcHHHHHHHHHHHHhcHHHHHHHHHHcCc
Q 034912 15 GGRKEIWDALRAAAEADLSLAQAIVDSAGV 44 (79)
Q Consensus 15 ~Gr~EIW~aLraA~e~d~~tAq~ildaA~i 44 (79)
..|..+-.||++|-+.+++.|+..|..|+=
T Consensus 18 ~ArS~~~eAl~~Ak~g~f~~A~~~i~eA~~ 47 (105)
T COG1447 18 NARSKAYEALKAAKEGDFEEAEELIQEAND 47 (105)
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 457899999999999899998888877653
No 27
>PF07559 FlaE: Flagellar basal body protein FlaE; InterPro: IPR011491 This domain is found in several bacterial FlaE flagellar proteins. These proteins are part of the flagellar basal body rod complex.; GO: 0030694 bacterial-type flagellum basal body, rod; PDB: 2BGY_A 1WLG_B 2BGZ_A 3A69_A.
Probab=34.17 E-value=19 Score=23.16 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=12.7
Q ss_pred eeeccCCCccccCceeee
Q 034912 53 ICYDERGAKYELPKYVLS 70 (79)
Q Consensus 53 ~~YDe~G~~Y~lP~~vis 70 (79)
.+||.+|+...|-.+...
T Consensus 16 ~vYDSlG~~h~lt~~f~k 33 (130)
T PF07559_consen 16 TVYDSLGNAHTLTVYFTK 33 (130)
T ss_dssp EEE-TT--EEEEEEEEEE
T ss_pred EEECCCCCEEEEEEEEEE
Confidence 699999999999887765
No 28
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=33.83 E-value=76 Score=23.90 Aligned_cols=17 Identities=53% Similarity=0.919 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHHHH
Q 034912 13 HYGGRKEIWDALRAAAE 29 (79)
Q Consensus 13 ~~~Gr~EIW~aLraA~e 29 (79)
+|+||.||=+|.|..++
T Consensus 126 ~Yggr~EI~~A~~~~~~ 142 (226)
T TIGR00055 126 NYGGRNEILHAVKQIAE 142 (226)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 59999999999998874
No 29
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=33.83 E-value=38 Score=26.06 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=23.5
Q ss_pred ceeecCC--------eeeeeccCCCcccc------CceeeeCCCCc
Q 034912 44 VIVQSAD--------LTICYDERGAKYEL------PKYVLSEPTNL 75 (79)
Q Consensus 44 itlp~g~--------L~~~YDe~G~~Y~l------P~~vis~P~N~ 75 (79)
|.+||-. ++++||+.|.|+.+ |..++-||.=+
T Consensus 129 i~IPTTagtgSe~t~~avi~~~~~~K~~~~~~~~~P~~ai~Dp~l~ 174 (376)
T cd08193 129 ILVPTTAGTGSEVTPIAIVTTPETLKVGVVSPHLLPDLAILDPELT 174 (376)
T ss_pred EEeCCCCcchHhhCCeEEEEcCCCceEEeeCccccCCEEEEChHHH
Confidence 5678764 77889887877544 88888888643
No 30
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=33.28 E-value=19 Score=23.78 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=26.6
Q ss_pred ceeecCCeeeeeccCCCccccCceeeeCCC
Q 034912 44 VIVQSADLTICYDERGAKYELPKYVLSEPT 73 (79)
Q Consensus 44 itlp~g~L~~~YDe~G~~Y~lP~~vis~P~ 73 (79)
..+|.|-+.+.--+...+|.||.-+++.|.
T Consensus 34 ~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~ 63 (100)
T PF02519_consen 34 SDVPKGHFAVYVGEERRRFVVPVSYLNHPL 63 (100)
T ss_pred CCCCCCeEEEEeCccceEEEechHHcCchh
Confidence 778999999877778889999999999985
No 31
>PF01687 Flavokinase: Riboflavin kinase; InterPro: IPR015865 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents the riboflavin kinase domains from bacteria and eukaryotes.; GO: 0008531 riboflavin kinase activity, 0009231 riboflavin biosynthetic process; PDB: 1Q9S_A 1NB9_A 1P4M_A 1NB0_A 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A ....
Probab=32.80 E-value=51 Score=22.43 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=16.5
Q ss_pred HHHHHHHHhcHHHHHHHHH
Q 034912 22 DALRAAAEADLSLAQAIVD 40 (79)
Q Consensus 22 ~aLraA~e~d~~tAq~ild 40 (79)
++|+++++.|.+.|+.++.
T Consensus 107 e~L~~qI~~D~~~a~~~lq 125 (125)
T PF01687_consen 107 EELKEQIKKDIEQARKYLQ 125 (125)
T ss_dssp HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 6899999999999999874
No 32
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=32.26 E-value=9.4 Score=26.88 Aligned_cols=36 Identities=11% Similarity=0.400 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCceeecCCee--eeeccCCCccccCce
Q 034912 32 LSLAQAIVDSAGVIVQSADLT--ICYDERGAKYELPKY 67 (79)
Q Consensus 32 ~~tAq~ildaA~itlp~g~L~--~~YDe~G~~Y~lP~~ 67 (79)
....+.+++.-.|.+|+|++. .-||..=+...+|.|
T Consensus 56 ~~~q~~L~~~N~I~VPhgSfv~Y~G~d~ie~~~~vP~F 93 (124)
T PF06849_consen 56 EEVQEKLREMNAIFVPHGSFVAYVGYDRIENEFKVPIF 93 (124)
T ss_dssp HHHHHHHHHTTEEE--BTTHHHHH-HHHHHHT-SS-EE
T ss_pred HHHHHHHHHCCeEEecCCCeeEeecHHHHhhcCCCCee
Confidence 467778889999999999997 677766666666654
No 33
>PLN02587 L-galactose dehydrogenase
Probab=31.38 E-value=21 Score=26.49 Aligned_cols=14 Identities=50% Similarity=0.952 Sum_probs=9.4
Q ss_pred hhhccCCCCC-CcHH
Q 034912 6 EFWDTAPHYG-GRKE 19 (79)
Q Consensus 6 EFwdT~p~~~-Gr~E 19 (79)
.||||++.|+ |..|
T Consensus 46 n~~DTA~~Yg~g~sE 60 (314)
T PLN02587 46 NFFDTSPYYGGTLSE 60 (314)
T ss_pred CEEECcCccCCCchH
Confidence 4788888886 4334
No 34
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=31.33 E-value=94 Score=19.11 Aligned_cols=33 Identities=30% Similarity=0.345 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHcCceeecC-----------CeeeeeccCCCccc
Q 034912 31 DLSLAQAIVDSAGVIVQSA-----------DLTICYDERGAKYE 63 (79)
Q Consensus 31 d~~tAq~ildaA~itlp~g-----------~L~~~YDe~G~~Y~ 63 (79)
|++....-|.++|+.+-.+ ...-++|-.||...
T Consensus 70 dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE 113 (120)
T cd07252 70 ALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHE 113 (120)
T ss_pred HHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEE
Confidence 7888889999999977532 12367888888776
No 35
>COG0152 PurC Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase [Nucleotide transport and metabolism]
Probab=31.25 E-value=1.5e+02 Score=22.97 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHcCceeecCCeeeeeccCCCc
Q 034912 18 KEIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAK 61 (79)
Q Consensus 18 ~EIW~aLraA~e~d~~tAq~ildaA~itlp~g~L~~~YDe~G~~ 61 (79)
+|=|+.|+..+-.=-+.++.+...+||++...-|---+|+.|+.
T Consensus 145 ~ee~~~i~~~alkin~~l~~~~~~~GiilvD~KlEFG~d~~g~i 188 (247)
T COG0152 145 PEEIEEIKELALKINEVLKDLFAKRGIILVDFKLEFGLDEDGEI 188 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeeEEeeEcCCCCE
Confidence 67888888887666778899999999999999998888887765
No 36
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=31.08 E-value=19 Score=26.85 Aligned_cols=14 Identities=43% Similarity=0.871 Sum_probs=10.0
Q ss_pred hhccCCCCC-CcHHH
Q 034912 7 FWDTAPHYG-GRKEI 20 (79)
Q Consensus 7 FwdT~p~~~-Gr~EI 20 (79)
||||++.|+ |+.|-
T Consensus 45 ~~DTA~~Yg~g~sE~ 59 (317)
T TIGR01293 45 LFDTAEVYAAGKAEV 59 (317)
T ss_pred eEECccccCCCccHH
Confidence 788888887 55553
No 37
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=30.95 E-value=86 Score=19.04 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=23.7
Q ss_pred hcHHHHHHHHHHcCceeecCCe-----------eeeeccCCCccc
Q 034912 30 ADLSLAQAIVDSAGVIVQSADL-----------TICYDERGAKYE 63 (79)
Q Consensus 30 ~d~~tAq~ildaA~itlp~g~L-----------~~~YDe~G~~Y~ 63 (79)
+|++.+..-|.++|+++...-- .-.+|-.|+.+.
T Consensus 80 ~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie 124 (128)
T cd07242 80 EAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLE 124 (128)
T ss_pred HHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEE
Confidence 3688888888999998764321 145777777765
No 38
>TIGR02448 conserverd hypothetical protein. This family consists of small hypothetical proteins, about 100 amino acids in length. The family includes five members (three in tandem) in Pseudomonas aeruginosa PAO1, and also in Pseudomonas putida KT2440, four in Pseudomonas syringae DC3000, and single members in several other Proteobacteria. The function is unknown.
Probab=30.78 E-value=49 Score=22.69 Aligned_cols=10 Identities=60% Similarity=0.823 Sum_probs=8.9
Q ss_pred cHHHHHHHHH
Q 034912 31 DLSLAQAIVD 40 (79)
Q Consensus 31 d~~tAq~ild 40 (79)
|+++||+||-
T Consensus 91 D~eLA~AILa 100 (101)
T TIGR02448 91 DMELAQAILA 100 (101)
T ss_pred HHHHHHHHHc
Confidence 9999999983
No 39
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=30.74 E-value=57 Score=24.10 Aligned_cols=20 Identities=35% Similarity=0.385 Sum_probs=16.3
Q ss_pred HHHHHHHHHh--------cHHHHHHHHH
Q 034912 21 WDALRAAAEA--------DLSLAQAIVD 40 (79)
Q Consensus 21 W~aLraA~e~--------d~~tAq~ild 40 (79)
=+|+++|+.. |..||++||.
T Consensus 228 ~~aI~aALr~g~i~~LItDe~tA~~lL~ 255 (255)
T PF04198_consen 228 AEAILAALRGGYINVLITDESTARALLE 255 (255)
T ss_dssp HHHHHHHHHTTSTSEEEEEHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEECHHHHHHHhC
Confidence 3678888874 9999999984
No 40
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=30.60 E-value=21 Score=26.97 Aligned_cols=21 Identities=24% Similarity=0.233 Sum_probs=14.5
Q ss_pred hhhccCCCCC--------CcHHHHHHHHHHH
Q 034912 6 EFWDTAPHYG--------GRKEIWDALRAAA 28 (79)
Q Consensus 6 EFwdT~p~~~--------Gr~EIW~aLraA~ 28 (79)
-||||++.|+ |+.|. .|..|+
T Consensus 45 ~~~DTA~~Yg~~~~~~~~g~sE~--~iG~aL 73 (346)
T PRK10625 45 NLIDVAEMYPVPPRPETQGLTET--YIGNWL 73 (346)
T ss_pred CEEECccccCCCcCCCCCCchHH--HHHHHH
Confidence 3899999996 77764 344443
No 41
>PF04439 Adenyl_transf: Streptomycin adenylyltransferase; InterPro: IPR007530 Also known as aminoglycoside 6-adenylyltransferase (2.7.7 from EC), this protein confers resistance to aminoglycoside antibiotics.; PDB: 2PBE_A.
Probab=30.36 E-value=84 Score=24.05 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=26.0
Q ss_pred CCCcHHHHHHHHHHHHhcHHHHHHHHHHcCceeecC
Q 034912 14 YGGRKEIWDALRAAAEADLSLAQAIVDSAGVIVQSA 49 (79)
Q Consensus 14 ~~Gr~EIW~aLraA~e~d~~tAq~ildaA~itlp~g 49 (79)
...-.+||+||.++|+-=.++|+.+-...|.+-|..
T Consensus 233 ~~~~~~iw~aL~~~~~LF~~~A~evA~~~~f~Ype~ 268 (282)
T PF04439_consen 233 DSDYEDIWQALFAMCDLFRELAKEVAEKLGFEYPEE 268 (282)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHT----SH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 456789999999999987788888888888877743
No 42
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=29.68 E-value=99 Score=18.36 Aligned_cols=34 Identities=32% Similarity=0.418 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHcCceeecC--------CeeeeeccCCCcccc
Q 034912 31 DLSLAQAIVDSAGVIVQSA--------DLTICYDERGAKYEL 64 (79)
Q Consensus 31 d~~tAq~ildaA~itlp~g--------~L~~~YDe~G~~Y~l 64 (79)
|++.+..-|.++|+++..+ ....++|-.|+...|
T Consensus 71 di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DPdG~~~~l 112 (114)
T cd07247 71 DVDAAAARVEAAGGKVLVPPTDIPGVGRFAVFADPEGAVFGL 112 (114)
T ss_pred CHHHHHHHHHHCCCEEEeCCcccCCcEEEEEEECCCCCEEEe
Confidence 7788888888899876422 112466666665543
No 43
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=29.47 E-value=48 Score=17.68 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=15.4
Q ss_pred ceeecCCee-eeeccCCCccc
Q 034912 44 VIVQSADLT-ICYDERGAKYE 63 (79)
Q Consensus 44 itlp~g~L~-~~YDe~G~~Y~ 63 (79)
++-|.|..+ -.||+.|+.-.
T Consensus 10 ~~d~~G~~~~y~YD~~g~l~~ 30 (38)
T PF05593_consen 10 VTDPDGRTTRYTYDAAGRLTS 30 (38)
T ss_pred EEcCCCCEEEEEECCCCCEEE
Confidence 556888886 79999998644
No 44
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=29.33 E-value=89 Score=24.09 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=23.5
Q ss_pred ceeecC--------CeeeeeccC-CCcc------ccCceeeeCCCCcc
Q 034912 44 VIVQSA--------DLTICYDER-GAKY------ELPKYVLSEPTNLI 76 (79)
Q Consensus 44 itlp~g--------~L~~~YDe~-G~~Y------~lP~~vis~P~N~~ 76 (79)
|.+||- ..++.||+. |.|+ ..|.++|-||.-+.
T Consensus 130 i~VPTtagTGsE~t~~avi~d~~~~~K~~~~~~~~~P~~~i~Dp~l~~ 177 (374)
T cd08189 130 FAIPTTAGTGSEVTIAAVISDPETHEKYAISDPRLLPKAAALDPRLTL 177 (374)
T ss_pred EEEECCCccccccCCeEEEEecCCCeeEEEeCCCccCCEEEEChHhhc
Confidence 788886 466888864 5565 45999999986543
No 45
>PF04402 SIMPL: Protein of unknown function (DUF541); InterPro: IPR007497 Members of this family have so far been found in bacteria and mouse UniProtKB/Swiss-Prot or UniProtKB/TrEMBL entries. However possible family members have also been identified in translated rat (GenBank:AW144450) and human (GenBank:AI478629) ESTs. A mouse family member has been named SIMPL (signalling molecule that associates with mouse pelle-like kinase). SIMPL appears to facilitate and/or regulate complex formation between IRAK/mPLK (IL-1 receptor-associated kinase) and IKK (inhibitor of kappa-B kinase) containing complexes, and thus regulate NF-kappa-B activity []. Separate experiments demonstrate that a mouse family member (named LaXp180) binds the Listeria monocytogenes surface protein ActA, which is a virulence factor that induces actin polymerisation. It may also bind stathmin, a protein involved in signal transduction and in the regulation of microtubule dynamics []. In bacteria its function is unknown, but it is thought to be located in the periplasm or outer membrane.
Probab=29.15 E-value=74 Score=21.55 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.5
Q ss_pred HHHHHHHHhcHHHHHHHHHHcCcee
Q 034912 22 DALRAAAEADLSLAQAIVDSAGVIV 46 (79)
Q Consensus 22 ~aLraA~e~d~~tAq~ildaA~itl 46 (79)
++++.|.+...+.|+.|..+.|.+|
T Consensus 128 e~~~~A~~~A~~kA~~lA~~~g~kl 152 (210)
T PF04402_consen 128 EALKEAIKDAKEKAEALAKALGVKL 152 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 4677788888999999999999886
No 46
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=28.65 E-value=28 Score=26.61 Aligned_cols=15 Identities=53% Similarity=0.857 Sum_probs=10.9
Q ss_pred hhhccCCCCCC-cHHH
Q 034912 6 EFWDTAPHYGG-RKEI 20 (79)
Q Consensus 6 EFwdT~p~~~G-r~EI 20 (79)
-||||++.|+. +.|-
T Consensus 48 n~~DTA~~Yg~g~sE~ 63 (316)
T COG0667 48 NFFDTADVYGDGRSEE 63 (316)
T ss_pred CEEECccccCCCchHH
Confidence 48999998885 5543
No 47
>PLN03090 auxin-responsive family protein; Provisional
Probab=28.16 E-value=23 Score=24.11 Aligned_cols=30 Identities=20% Similarity=0.408 Sum_probs=25.0
Q ss_pred ceeecCCeeeeeccCCCccccCceeeeCCC
Q 034912 44 VIVQSADLTICYDERGAKYELPKYVLSEPT 73 (79)
Q Consensus 44 itlp~g~L~~~YDe~G~~Y~lP~~vis~P~ 73 (79)
..+|.|-+.+.--+...+|.||.-+++.|.
T Consensus 38 ~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~ 67 (104)
T PLN03090 38 LDVPKGHFPVYVGENRSRYIVPISFLTHPE 67 (104)
T ss_pred CCCCCCcEEEEECCCCEEEEEEHHHcCCHH
Confidence 467999998766666789999999999986
No 48
>TIGR00081 purC phosphoribosylaminoimidazole-succinocarboxamide synthase. Check length. Longer versions may be multifunctional enzymes.
Probab=28.01 E-value=1.9e+02 Score=21.92 Aligned_cols=44 Identities=20% Similarity=0.270 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHcCceeecCCeeeeeccCCCc
Q 034912 18 KEIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAK 61 (79)
Q Consensus 18 ~EIW~aLraA~e~d~~tAq~ildaA~itlp~g~L~~~YDe~G~~ 61 (79)
++-++.|+..+-.=.+..+.+...+||+|...-|--.+|+.|..
T Consensus 147 ~~e~~~i~~~a~~v~~~l~~~~~~~gl~LvD~K~EFG~~~~g~i 190 (237)
T TIGR00081 147 EEELERIKELALKVNEVLKKYFDEKGIILVDFKLEFGLDEEGNL 190 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeEEeeEcCCCCE
Confidence 45578888877777788889999999999999998557888853
No 49
>PF12645 HTH_16: Helix-turn-helix domain; InterPro: IPR024760 This domain appears to be a helix-turn-helix domain, suggesting a transcriptional regulatory protein. Some proteins with this domain are annotated as conjugative transposon proteins.
Probab=27.74 E-value=23 Score=21.66 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=26.3
Q ss_pred HHHHHHHhcHHHHHHHHHHcCceeecCCeeeeeccCCCccc
Q 034912 23 ALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYE 63 (79)
Q Consensus 23 aLraA~e~d~~tAq~ildaA~itlp~g~L~~~YDe~G~~Y~ 63 (79)
.|.+|.++|.+.=+.||.--.=-+-.-++...||+.|+.|-
T Consensus 3 vI~~A~~GD~~A~~~IL~~y~~yI~kls~r~~~d~~g~~~~ 43 (65)
T PF12645_consen 3 VIKAAKQGDPEAMEEILKHYEPYISKLSTRTLYDEYGNVYG 43 (65)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHhhcccccCCcCc
Confidence 56777777777777777655433333344567888887664
No 50
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=27.57 E-value=95 Score=18.34 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHcCceeecC--------CeeeeeccCCCccc
Q 034912 31 DLSLAQAIVDSAGVIVQSA--------DLTICYDERGAKYE 63 (79)
Q Consensus 31 d~~tAq~ildaA~itlp~g--------~L~~~YDe~G~~Y~ 63 (79)
|++.+..-|.++|+++-.. .-..++|-.|+.+.
T Consensus 67 d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iE 107 (113)
T cd08345 67 EFDEYTERLKALGVEMKPERPRVQGEGRSIYFYDPDGHLLE 107 (113)
T ss_pred HHHHHHHHHHHcCCccCCCccccCCCceEEEEECCCCCEEE
Confidence 7888888888999886321 11246676776665
No 51
>PF01832 Glucosaminidase: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; InterPro: IPR002901 This domain is found in many different proteins including mannosyl-glycoprotein endo-beta-N-acetylglucosamidase (3.2.1.96 from EC).It is also found in flagellar protein J (P75942 from SWISSPROT), which has been shown to hydrolyse peptidoglycan [].; GO: 0004040 amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3FI7_A 2ZYC_A 3K3T_A.
Probab=27.57 E-value=92 Score=20.11 Aligned_cols=23 Identities=43% Similarity=0.341 Sum_probs=15.8
Q ss_pred HHHHHHHHH-----hcHHHHHHHHHHcC
Q 034912 21 WDALRAAAE-----ADLSLAQAIVDSAG 43 (79)
Q Consensus 21 W~aLraA~e-----~d~~tAq~ildaA~ 43 (79)
.++...+++ ..+..||+||++.-
T Consensus 2 ~~~~~~~~~~~gI~~~~~laQa~lESg~ 29 (136)
T PF01832_consen 2 AKAAIEAAKKYGIPPSLILAQAILESGW 29 (136)
T ss_dssp HHHHHHHHHHCTS-HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhcC
Confidence 344444544 37999999999853
No 52
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=27.54 E-value=1e+02 Score=22.91 Aligned_cols=17 Identities=59% Similarity=0.954 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHHHH
Q 034912 13 HYGGRKEIWDALRAAAE 29 (79)
Q Consensus 13 ~~~Gr~EIW~aLraA~e 29 (79)
+|+||.||=+|.|..++
T Consensus 127 ~Y~gr~eI~~a~~~~~~ 143 (221)
T cd00475 127 NYGGRQEIIHAVREIAE 143 (221)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 59999999999998875
No 53
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=27.51 E-value=60 Score=21.66 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=24.4
Q ss_pred CCcHHHHHHHHHHHHhcHHHHHHHHHHcCc
Q 034912 15 GGRKEIWDALRAAAEADLSLAQAIVDSAGV 44 (79)
Q Consensus 15 ~Gr~EIW~aLraA~e~d~~tAq~ildaA~i 44 (79)
..|..+=.||++|-+.|++.|+..|..|.=
T Consensus 19 ~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~ 48 (104)
T PRK09591 19 NARTEVHEAFAAMREGNFDLAEQKLNQSNE 48 (104)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356778889999999999999888887754
No 54
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=27.37 E-value=67 Score=24.74 Aligned_cols=28 Identities=32% Similarity=0.302 Sum_probs=21.2
Q ss_pred CCcHHHHHHHHHHHHh--------cHHHHHHHHHHc
Q 034912 15 GGRKEIWDALRAAAEA--------DLSLAQAIVDSA 42 (79)
Q Consensus 15 ~Gr~EIW~aLraA~e~--------d~~tAq~ildaA 42 (79)
-|-.+==.||++|+.. |..||+.||+.+
T Consensus 282 A~G~~K~~Ai~aALrgg~i~~LITDe~tA~~lL~~~ 317 (318)
T PRK15418 282 AGGEEKAEAIIAALKGGYINALVTDEKTARAILALL 317 (318)
T ss_pred ecCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHhh
Confidence 3444555789999884 999999999753
No 55
>PF13276 HTH_21: HTH-like domain
Probab=26.89 E-value=83 Score=17.92 Aligned_cols=40 Identities=20% Similarity=0.428 Sum_probs=30.3
Q ss_pred hhccCCCCCCcHHHHHHHHHHH--HhcHHHHHHHHHHcCceee
Q 034912 7 FWDTAPHYGGRKEIWDALRAAA--EADLSLAQAIVDSAGVIVQ 47 (79)
Q Consensus 7 FwdT~p~~~Gr~EIW~aLraA~--e~d~~tAq~ildaA~itlp 47 (79)
|=++.+ .=|.+-||..|+.-- .....+.+.|+...||..+
T Consensus 14 ~~~~~~-~yG~rri~~~L~~~~~~~v~~krV~RlM~~~gL~~~ 55 (60)
T PF13276_consen 14 FKESKP-TYGYRRIWAELRREGGIRVSRKRVRRLMREMGLRSK 55 (60)
T ss_pred HHHcCC-CeehhHHHHHHhccCcccccHHHHHHHHHHcCCccc
Confidence 334445 458889999999862 3478899999999999765
No 56
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=26.74 E-value=58 Score=21.48 Aligned_cols=32 Identities=34% Similarity=0.565 Sum_probs=25.5
Q ss_pred CCcHHHHHHHHHHHHhcHHHHHHHHHHcCcee
Q 034912 15 GGRKEIWDALRAAAEADLSLAQAIVDSAGVIV 46 (79)
Q Consensus 15 ~Gr~EIW~aLraA~e~d~~tAq~ildaA~itl 46 (79)
..|..+=.||+.|-+.|++.|+..|..|.=.+
T Consensus 16 ~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~~l 47 (99)
T TIGR00823 16 DARSKALEALKAAKAGDFAKARALVEQAGMCL 47 (99)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34677888999999999999998888876443
No 57
>cd00232 HemeO Heme oxygenase catalyzes the rate limiting step in the degradation of heme to bilirubin, it is essential for recycling of iron from heme. Heme is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide. This family includes bacterial HO, as well as the mammalian isoforms HO-1, and HO-2. Heme oxygenases play key roles in heme homeostasis, oxidative stress response, photosynthetic pigment formation in cyanobacteria, cellular signaling in mammals, and iron acquisition from host heme by bacterial pathogens.
Probab=26.18 E-value=1.2e+02 Score=20.80 Aligned_cols=29 Identities=28% Similarity=0.234 Sum_probs=23.3
Q ss_pred CCcHHHHHHHHHHHHh---cHHHHHHHHHHcC
Q 034912 15 GGRKEIWDALRAAAEA---DLSLAQAIVDSAG 43 (79)
Q Consensus 15 ~Gr~EIW~aLraA~e~---d~~tAq~ildaA~ 43 (79)
.+..+.|...+.++++ +.+..+.|+++|-
T Consensus 158 ~~~~~~w~~f~~~l~~~~~~~~~~~~~i~~A~ 189 (203)
T cd00232 158 ADRGLFKREFREALDALPLDEEERQRVVAEAR 189 (203)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 5788999999999986 6666777777764
No 58
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=25.97 E-value=53 Score=24.04 Aligned_cols=37 Identities=41% Similarity=0.559 Sum_probs=24.5
Q ss_pred CCCCcHHHHHHHHHHHHh-----------cHHHHHHHHHHcCceeecCCee
Q 034912 13 HYGGRKEIWDALRAAAEA-----------DLSLAQAIVDSAGVIVQSADLT 52 (79)
Q Consensus 13 ~~~Gr~EIW~aLraA~e~-----------d~~tAq~ildaA~itlp~g~L~ 52 (79)
.|+||.||=+|.+..++. +.++-..-|..+++ | .||-
T Consensus 123 ~Yggr~eI~~a~~~~~~~~~~~~~~~~~i~~~~i~~~L~~~~~--P-pDLl 170 (223)
T PF01255_consen 123 NYGGRDEIVDAARKLAEEVQSGKLSPEDIDEELISSHLYTPDL--P-PDLL 170 (223)
T ss_dssp CE-HHHHHHHHHHHHHHHHHTTSSGGGG-SHHHHHHTSTTTTS-----SEE
T ss_pred cCCcHHHHHHHHHHhhhhhccCccccccCCHHHHHhhccccCC--C-CCEE
Confidence 599999999999999862 34555555555666 6 6774
No 59
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=25.88 E-value=63 Score=21.25 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=25.3
Q ss_pred CCcHHHHHHHHHHHHhcHHHHHHHHHHcCcee
Q 034912 15 GGRKEIWDALRAAAEADLSLAQAIVDSAGVIV 46 (79)
Q Consensus 15 ~Gr~EIW~aLraA~e~d~~tAq~ildaA~itl 46 (79)
..|..+=.||+.|-+.|++.|+..|..|+=.+
T Consensus 14 ~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~~l 45 (97)
T cd00215 14 NARSKALEALKAAKEGDFAEAEELLEEANDSL 45 (97)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34667788999998889999999888776443
No 60
>PLN03085 nucleobase:cation symporter-1; Provisional
Probab=25.71 E-value=1.5e+02 Score=22.91 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=36.3
Q ss_pred hhhhccCCCCCCcHHHHHHHHHHHHhcHHHHHHHHHHcCceeecC
Q 034912 5 DEFWDTAPHYGGRKEIWDALRAAAEADLSLAQAIVDSAGVIVQSA 49 (79)
Q Consensus 5 ~EFwdT~p~~~Gr~EIW~aLraA~e~d~~tAq~ildaA~itlp~g 49 (79)
.+.|-++ ...+.+.|.......++++..-...|+.-++.+|.+
T Consensus 163 r~~w~~~--s~~~~~~W~~~~~~~qe~Ir~LNkkIdkYNLIVPl~ 205 (221)
T PLN03085 163 KKAWANR--CEGDDSQWIEDSRLLQEQLRQINNKVFRYNLIVPFG 205 (221)
T ss_pred HHHhccc--CchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence 4558886 567888999988888889999999999999999954
No 61
>PTZ00176 erythrocyte membrane protein 1 (PfEMP1); Provisional
Probab=25.58 E-value=28 Score=32.74 Aligned_cols=23 Identities=22% Similarity=0.666 Sum_probs=19.3
Q ss_pred hhhhhhhccCCCCCCcHHHHHHHHHHHH
Q 034912 2 QLRDEFWDTAPHYGGRKEIWDALRAAAE 29 (79)
Q Consensus 2 ~~R~EFwdT~p~~~Gr~EIW~aLraA~e 29 (79)
+.|++||++- +++||.|+--++.
T Consensus 623 k~RkdWWe~N-----kk~IWeAMLCgLk 645 (1317)
T PTZ00176 623 VDRKTWWDDN-----KNVVWNAMLCGYK 645 (1317)
T ss_pred HhHHHHHHHh-----hhhhhhhceeccc
Confidence 5699999988 8899999877663
No 62
>PF10875 DUF2670: Protein of unknown function (DUF2670); InterPro: IPR022714 This bacterial family of proteins has no known function and appears to be restricted to Rickettsiaceae.
Probab=25.21 E-value=46 Score=23.95 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=16.0
Q ss_pred cHHHHHHHHHHcCceee--cCCeeeeec
Q 034912 31 DLSLAQAIVDSAGVIVQ--SADLTICYD 56 (79)
Q Consensus 31 d~~tAq~ildaA~itlp--~g~L~~~YD 56 (79)
-|.++++|-.-+-..|- .|.|..-++
T Consensus 60 iL~~sKAvAqnCt~kL~p~~~~lv~fW~ 87 (139)
T PF10875_consen 60 ILDTSKAVAQNCTSKLGPNWGHLVSFWN 87 (139)
T ss_pred HHHHHHHHHHhcccccCCccchHHHHHH
Confidence 37788888776666665 555543333
No 63
>COG2968 Uncharacterized conserved protein [Function unknown]
Probab=25.11 E-value=88 Score=24.22 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHcCcee
Q 034912 20 IWDALRAAAEADLSLAQAIVDSAGVIV 46 (79)
Q Consensus 20 IW~aLraA~e~d~~tAq~ildaA~itl 46 (79)
+=+|+++|.+.....||++.++.|+.|
T Consensus 163 ~~~Ar~~Av~dA~~kA~~lA~a~gv~l 189 (243)
T COG2968 163 VQQARKAAVADAIAKAQALASALGVKL 189 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 346788888888999999999999987
No 64
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=25.11 E-value=1.1e+02 Score=18.55 Aligned_cols=33 Identities=24% Similarity=0.205 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHcCcee---ec------CCeeeeeccCCCccc
Q 034912 31 DLSLAQAIVDSAGVIV---QS------ADLTICYDERGAKYE 63 (79)
Q Consensus 31 d~~tAq~ildaA~itl---p~------g~L~~~YDe~G~~Y~ 63 (79)
|++.+.+-|.++|+.+ |. |...-++|-.||..+
T Consensus 74 dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE 115 (122)
T cd07265 74 DLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTME 115 (122)
T ss_pred HHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEE
Confidence 7888888899999875 32 122356788887765
No 65
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=25.04 E-value=1.3e+02 Score=22.93 Aligned_cols=17 Identities=53% Similarity=0.706 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHHHH
Q 034912 13 HYGGRKEIWDALRAAAE 29 (79)
Q Consensus 13 ~~~Gr~EIW~aLraA~e 29 (79)
+|+||.||=+|.|..++
T Consensus 141 ~YggR~EI~~A~k~l~~ 157 (253)
T PRK14836 141 SYGGRWDIVTAARALAR 157 (253)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 59999999999998874
No 66
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=24.68 E-value=1.1e+02 Score=18.59 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=14.8
Q ss_pred hcHHHHHHHHHHcCceee
Q 034912 30 ADLSLAQAIVDSAGVIVQ 47 (79)
Q Consensus 30 ~d~~tAq~ildaA~itlp 47 (79)
+|++.+..-|.++|+.+.
T Consensus 74 ~~v~~~~~~l~~~G~~~~ 91 (121)
T cd09013 74 EALERRVAALEASGLGIG 91 (121)
T ss_pred HHHHHHHHHHHHcCCccc
Confidence 378888889999999863
No 67
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=24.63 E-value=1.1e+02 Score=18.50 Aligned_cols=17 Identities=18% Similarity=0.063 Sum_probs=13.8
Q ss_pred cHHHHHHHHHHcCceee
Q 034912 31 DLSLAQAIVDSAGVIVQ 47 (79)
Q Consensus 31 d~~tAq~ildaA~itlp 47 (79)
|++.+..-|.++|+++.
T Consensus 79 dvd~~~~~l~~~G~~~~ 95 (122)
T cd07235 79 EVDALYAELVGAGYPGH 95 (122)
T ss_pred HHHHHHHHHHHCCCCcC
Confidence 78888888889998754
No 68
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.62 E-value=1.3e+02 Score=23.10 Aligned_cols=17 Identities=53% Similarity=0.722 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHHHH
Q 034912 13 HYGGRKEIWDALRAAAE 29 (79)
Q Consensus 13 ~~~Gr~EIW~aLraA~e 29 (79)
+|+||.||=+|.|..++
T Consensus 145 ~Yggr~EI~~A~k~~~~ 161 (253)
T PRK14832 145 NYGSRNEITRACRQVAE 161 (253)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 59999999999998764
No 69
>PHA00435 capsid assembly protein
Probab=24.56 E-value=74 Score=25.61 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=14.4
Q ss_pred cHHHHHHHHHHcCcee
Q 034912 31 DLSLAQAIVDSAGVIV 46 (79)
Q Consensus 31 d~~tAq~ildaA~itl 46 (79)
|+.|+++||+.+|-+.
T Consensus 228 dl~t~K~ivnl~~~sy 243 (306)
T PHA00435 228 DLATVKAIINLAGASR 243 (306)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998765
No 70
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.49 E-value=1.3e+02 Score=23.04 Aligned_cols=17 Identities=29% Similarity=0.692 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHHHH
Q 034912 13 HYGGRKEIWDALRAAAE 29 (79)
Q Consensus 13 ~~~Gr~EIW~aLraA~e 29 (79)
+|+||.||=+|.+..++
T Consensus 149 ~Yggr~EI~~A~~~~~~ 165 (250)
T PRK14840 149 NYGGKDELVRAFKKLHQ 165 (250)
T ss_pred cCCcHHHHHHHHHHHHH
Confidence 59999999999998875
No 71
>cd07885 RHD-n_RelA N-terminal sub-domain of the Rel homology domain (RHD) of RelA. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD domain of the RelA family of transcription factors, categorized as a class II member of the NF-kappa B family. In class II NF-kappa Bs, the RHD domain co-occurs with a C-terminal transactivation domain (TAD). NF-kappa B proteins are part of a protein complex that acts as a transcription factor, which is responsible for regulating a host of cellular responses to a variety of stimuli. This complex tightly regulates the expression of a large number of genes, and is involved in processes such as adaptive and innate immunity, stress response, inflammation, cell adhesion, proliferation and apoptosis. The cytosolic NF-kappa B complex is activated via phosphorylation of the ankyrin-repeat containing inhibitory protein I-kappa B, which
Probab=24.34 E-value=61 Score=23.95 Aligned_cols=18 Identities=44% Similarity=0.600 Sum_probs=15.3
Q ss_pred eccCCCccccCceeeeCCC
Q 034912 55 YDERGAKYELPKYVLSEPT 73 (79)
Q Consensus 55 YDe~G~~Y~lP~~vis~P~ 73 (79)
.|+.|....|| -|+|+|+
T Consensus 148 ~d~~G~~~~l~-PVvS~pI 165 (169)
T cd07885 148 RDPSGRLLPLP-PVLSQPI 165 (169)
T ss_pred ECCCCCEEeCC-Ceecccc
Confidence 39999998886 7999996
No 72
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.24 E-value=1.3e+02 Score=22.81 Aligned_cols=17 Identities=59% Similarity=0.900 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHHHH
Q 034912 13 HYGGRKEIWDALRAAAE 29 (79)
Q Consensus 13 ~~~Gr~EIW~aLraA~e 29 (79)
+|+||.||=+|.+..++
T Consensus 147 ~Yggr~EIv~A~~~l~~ 163 (249)
T PRK14831 147 NYGGRQEIVQAARAIAQ 163 (249)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 59999999999998875
No 73
>cd08510 PBP2_Lactococcal_OppA_like The substrate binding component of an ABC-type lactococcal OppA-like transport system contains. This family represents the substrate binding domain of an ATP-binding cassette (ABC)-type oligopeptide import system from Lactococcus lactis and other gram-positive bacteria, as well as its closet homologs from gram-negative bacteria. Oligopeptide-binding protein (OppA) from Lactococcus lactis can bind peptides of length from 4 to at least 35 residues without sequence preference. The oligopeptide import system OppABCDEF is consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in sev
Probab=24.10 E-value=1.1e+02 Score=23.92 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHcCceeecCCeeeeeccCCCccccC
Q 034912 31 DLSLAQAIVDSAGVIVQSADLTICYDERGAKYELP 65 (79)
Q Consensus 31 d~~tAq~ildaA~itlp~g~L~~~YDe~G~~Y~lP 65 (79)
|++.|+++|+.||.+...|| .......|....|.
T Consensus 342 d~~~Ak~lL~eaG~~~~~~d-g~~~~~~G~~l~i~ 375 (516)
T cd08510 342 DPEKAKKLLDEAGYKDVDGD-GFREDPDGKPLTIN 375 (516)
T ss_pred CHHHHHHHHHHcCCEEcCCC-eeEECCCCcEEEEE
Confidence 68899999999999876553 12233345444443
No 74
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=23.94 E-value=1.6e+02 Score=17.44 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=15.2
Q ss_pred cHHHHHHHHHHcCceeec
Q 034912 31 DLSLAQAIVDSAGVIVQS 48 (79)
Q Consensus 31 d~~tAq~ildaA~itlp~ 48 (79)
|++.+..-|.++|+++..
T Consensus 67 d~~~~~~~l~~~G~~~~~ 84 (112)
T cd07238 67 DVDAALARAVAAGFAIVY 84 (112)
T ss_pred CHHHHHHHHHhcCCeEec
Confidence 788888889999998755
No 75
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.90 E-value=1.4e+02 Score=23.50 Aligned_cols=17 Identities=53% Similarity=0.816 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHHHH
Q 034912 13 HYGGRKEIWDALRAAAE 29 (79)
Q Consensus 13 ~~~Gr~EIW~aLraA~e 29 (79)
.|+||.||=+|.+..++
T Consensus 194 ~YgGR~EI~~A~~~i~~ 210 (296)
T PRK14827 194 NYGGRTEITEATREIAR 210 (296)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 59999999999998875
No 76
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=23.67 E-value=14 Score=23.90 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=10.8
Q ss_pred CeeeeeccCCCccc
Q 034912 50 DLTICYDERGAKYE 63 (79)
Q Consensus 50 ~L~~~YDe~G~~Y~ 63 (79)
+|..|||+.|..|-
T Consensus 65 ~LY~~~~~dGfLyi 78 (87)
T cd01612 65 NLYRCFGTNGELIV 78 (87)
T ss_pred HHHHhcCCCCEEEE
Confidence 45578999998874
No 77
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=23.43 E-value=1.3e+02 Score=22.96 Aligned_cols=38 Identities=42% Similarity=0.640 Sum_probs=27.7
Q ss_pred CCCCcHHHHHHHHHHHHh-----------cHHHHHHHHHHcCceeecCCee
Q 034912 13 HYGGRKEIWDALRAAAEA-----------DLSLAQAIVDSAGVIVQSADLT 52 (79)
Q Consensus 13 ~~~Gr~EIW~aLraA~e~-----------d~~tAq~ildaA~itlp~g~L~ 52 (79)
.||||.||=+|.|.-++. +.++-.+-|..++ +|..||-
T Consensus 143 nYGGR~eI~~avr~ia~~v~~g~l~~~~I~e~~i~~~L~~~~--~pdpDLl 191 (245)
T COG0020 143 NYGGRDEIVDAVRKIAEDVAAGKLSPEDIDEELISSHLYTSG--LPDPDLL 191 (245)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCChHHcCHHHHHHhhcccC--CCCCCEE
Confidence 499999999999998762 5666666666644 3566664
No 78
>PF12714 TILa: TILa domain
Probab=23.33 E-value=44 Score=19.66 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=15.0
Q ss_pred eeeccCCCccccCceeeeC
Q 034912 53 ICYDERGAKYELPKYVLSE 71 (79)
Q Consensus 53 ~~YDe~G~~Y~lP~~vis~ 71 (79)
||.|..|++|.+=+..+++
T Consensus 1 GC~d~~G~yy~~Ge~~~~~ 19 (56)
T PF12714_consen 1 GCTDYNGRYYPPGESWWTD 19 (56)
T ss_pred CCcCcCCEEECCCCEEeCC
Confidence 5788899999988876654
No 79
>PLN03086 PRLI-interacting factor K; Provisional
Probab=23.15 E-value=72 Score=27.35 Aligned_cols=35 Identities=17% Similarity=0.475 Sum_probs=25.6
Q ss_pred HHHHHHcCceeecCCe-eeeeccCCCccccCceeeeC
Q 034912 36 QAIVDSAGVIVQSADL-TICYDERGAKYELPKYVLSE 71 (79)
Q Consensus 36 q~ildaA~itlp~g~L-~~~YDe~G~~Y~lP~~vis~ 71 (79)
..++..-||+.- -.| ..-||..|.|--||.-++..
T Consensus 68 ~~~~~~~g~~~~-~~~~~~~~~~~GdKI~LPpSaL~~ 103 (567)
T PLN03086 68 ESLQAGRGIVFS-RIFEAVSFQGNGDKIKLPPSCFTE 103 (567)
T ss_pred HHHHcCCCeEEE-EEeeccccCCCCCeEEcCHHHHHH
Confidence 334456677774 445 48999999999999988763
No 80
>cd08490 PBP2_NikA_DppA_OppA_like_3 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=23.08 E-value=87 Score=23.80 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHcCceeecCCeeeeeccCCCccccC
Q 034912 31 DLSLAQAIVDSAGVIVQSADLTICYDERGAKYELP 65 (79)
Q Consensus 31 d~~tAq~ildaA~itlp~g~L~~~YDe~G~~Y~lP 65 (79)
|++.|+.+|+.||.+.-.++. ++..|....|-
T Consensus 293 d~~~A~~lL~~aG~~~~~~~~---~~~~G~~~~l~ 324 (470)
T cd08490 293 DPEKAKELLAEAGWTDGDGDG---IEKDGEPLELT 324 (470)
T ss_pred CHHHHHHHHHHcCCCCCCCcc---cccCCceEEEE
Confidence 688999999999987654433 35567655443
No 81
>PRK12302 bssR biofilm formation regulatory protein BssR; Reviewed
Probab=23.00 E-value=1.3e+02 Score=21.35 Aligned_cols=19 Identities=47% Similarity=0.608 Sum_probs=13.3
Q ss_pred CcHHHHHHHHHHHHhcHHHH
Q 034912 16 GRKEIWDALRAAAEADLSLA 35 (79)
Q Consensus 16 Gr~EIW~aLraA~e~d~~tA 35 (79)
=++|=|.|||.|.+ .+++|
T Consensus 64 ~d~eE~~aL~~A~~-aLa~A 82 (127)
T PRK12302 64 LDQEEWSALRHAEE-ALATA 82 (127)
T ss_pred CCHHHHHHHHHHHH-HHHHH
Confidence 36899999999844 34443
No 82
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=22.96 E-value=53 Score=21.03 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=32.1
Q ss_pred hcHHHHHHHHHHcCceeecC--------CeeeeeccCCCccccCceeeeCCCCcc
Q 034912 30 ADLSLAQAIVDSAGVIVQSA--------DLTICYDERGAKYELPKYVLSEPTNLI 76 (79)
Q Consensus 30 ~d~~tAq~ildaA~itlp~g--------~L~~~YDe~G~~Y~lP~~vis~P~N~~ 76 (79)
.|++.+.+-|.++|+++-.+ .-.-+.|-.|+...|=..-++|-.|++
T Consensus 74 ~dv~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~~~~~~~~~~~ 128 (139)
T PRK04101 74 EDFDHWYQRLKENDVNILPGRERDERDKKSIYFTDPDGHKFEFHTGTLQDRLNYY 128 (139)
T ss_pred HHHHHHHHHHHHCCceEcCCccccCCCceEEEEECCCCCEEEEEeCCHHHHHHHH
Confidence 48999999999999986321 122577888888876655555544443
No 83
>cd08520 PBP2_NikA_DppA_OppA_like_21 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=22.86 E-value=89 Score=23.99 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=16.3
Q ss_pred cHHHHHHHHHHcCceeecCC
Q 034912 31 DLSLAQAIVDSAGVIVQSAD 50 (79)
Q Consensus 31 d~~tAq~ildaA~itlp~g~ 50 (79)
|++.|+++|+.||.+...|+
T Consensus 303 d~~kAk~lL~eaG~~~~~~~ 322 (468)
T cd08520 303 DPEKAKELLKGLGYTDNGGD 322 (468)
T ss_pred CHHHHHHHHHHcCCcccCCC
Confidence 89999999999998764443
No 84
>PF09039 HTH_Tnp_Mu_2: Mu DNA binding, I gamma subdomain; InterPro: IPR015126 This domain is responsible for binding the DNA attachment sites at each end of the Mu genome. They adopt a secondary structure comprising a four helix bundle tightly packed around a hydrophobic core consisting of aliphatic and aromatic amino acid residues. Helices 1 and 2 are oriented antiparallel to each other. Helix 3 crosses helices 1 and 2 at angles of 60 and 120 degrees, respectively. Excluding the C-terminal helix 4, the fold of the I-gamma subdomain is remarkably similar to that of the homeodomain family of helix-turn-helix DNA-binding proteins, although their amino acid sequences are completely unrelated []. ; PDB: 2EZL_A 2EZH_A 2EZI_A 2EZK_A.
Probab=22.65 E-value=1.5e+02 Score=19.80 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=17.9
Q ss_pred CCcHHHHHHHHHHH--------HhcHHHHHHHHHHcCceeec
Q 034912 15 GGRKEIWDALRAAA--------EADLSLAQAIVDSAGVIVQS 48 (79)
Q Consensus 15 ~Gr~EIW~aLraA~--------e~d~~tAq~ildaA~itlp~ 48 (79)
.=.+|+|+.++.-- .+=+.-.+.+....|..+|+
T Consensus 30 ~~~~eaw~~fksdYLr~e~Ps~~~cyrr~~~~a~~~Gw~iPS 71 (108)
T PF09039_consen 30 EIDEEAWEFFKSDYLRPEKPSFSACYRRLKRAAKENGWPIPS 71 (108)
T ss_dssp -S-HHHHHHHHHHHTSTT---HHHHHHHHHHHHHHHT-----
T ss_pred cCCHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHcCCCCCC
Confidence 34689999999852 22345555666666887774
No 85
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.53 E-value=1.7e+02 Score=22.06 Aligned_cols=17 Identities=47% Similarity=0.784 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHHHH
Q 034912 13 HYGGRKEIWDALRAAAE 29 (79)
Q Consensus 13 ~~~Gr~EIW~aLraA~e 29 (79)
+|+||.||=+|+|..++
T Consensus 120 ~Yggr~EI~~A~~~~~~ 136 (229)
T PRK10240 120 NYGGRWDIVQGVRQLAE 136 (229)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 59999999999998874
No 86
>PRK12607 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional
Probab=22.52 E-value=2.4e+02 Score=22.47 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHcCceeecCCeeeeeccCCC
Q 034912 18 KEIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERGA 60 (79)
Q Consensus 18 ~EIW~aLraA~e~d~~tAq~ildaA~itlp~g~L~~~YDe~G~ 60 (79)
++.|+.|+..+-.=.+.++.+....||+|...-+---.|..|.
T Consensus 168 ~~~~~~i~~~al~i~~~~~~~~~~~GiiLvD~K~EFG~d~~G~ 210 (313)
T PRK12607 168 PEDWDELSKYALALFARGQEMAAERGLILVDTKYEFGKDADGR 210 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeEeeeecCCCc
Confidence 4678888888777788899999999999999888744677774
No 87
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=22.51 E-value=55 Score=18.18 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=10.5
Q ss_pred HHHHHHHHcCceeecCC
Q 034912 34 LAQAIVDSAGVIVQSAD 50 (79)
Q Consensus 34 tAq~ildaA~itlp~g~ 50 (79)
.=+.||.+.||..|.+.
T Consensus 8 ~Lk~iL~~~~I~~ps~A 24 (35)
T PF12949_consen 8 QLKRILDEHGIEFPSNA 24 (35)
T ss_dssp HHHHHHHHHT---SSS-
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 44789999999998763
No 88
>PF07554 FIVAR: Uncharacterised Sugar-binding Domain; InterPro: IPR011490 This domain is found in a wide variety of contexts, but mostly occurring in cell wall associated proteins. A lack of conserved catalytic residues suggests that it is a binding domain. From context, possible substrates are hyaluronate or fibronectin. This is further evidenced by []. Possibly the exact substrate is N-acetyl glucosamine. Finding it in the same protein as IPR007781 from INTERPRO further supports this proposal. It is found in the C-terminal part of O82833 from SWISSPROT, which is removed during maturation []. The name FIVAR derives from Found In Various Architectures.; PDB: 1XVH_B 2OZN_B 2JNK_A 2DGJ_A.
Probab=22.48 E-value=1.3e+02 Score=16.32 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=14.9
Q ss_pred cHHHHHHHHHHHHhcHHHHHHHHHHc
Q 034912 17 RKEIWDALRAAAEADLSLAQAIVDSA 42 (79)
Q Consensus 17 r~EIW~aLraA~e~d~~tAq~ildaA 42 (79)
.++.|.++..| +..|+.||+..
T Consensus 17 ~~~~~~~y~~A----l~~A~~vl~~~ 38 (51)
T PF07554_consen 17 TPESKAAYDNA----LNAAKAVLNNT 38 (51)
T ss_dssp -HHHHHHHHHH----HHHHHHHHCCT
T ss_pred CHHHHHHHHHH----HHHHHHHHcCC
Confidence 35777777766 56788888753
No 89
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=22.40 E-value=56 Score=26.52 Aligned_cols=36 Identities=11% Similarity=0.412 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCceeecCCee--eeeccCCCccccCce
Q 034912 32 LSLAQAIVDSAGVIVQSADLT--ICYDERGAKYELPKY 67 (79)
Q Consensus 32 ~~tAq~ildaA~itlp~g~L~--~~YDe~G~~Y~lP~~ 67 (79)
.+..+.+.+.-.|.+|+|++. .-||..=+...+|.|
T Consensus 76 ~~~~~~l~~~n~i~iPh~sf~~y~g~~~ie~~~~vp~f 113 (366)
T PRK13277 76 EKVQDELREENAIFVPNRSFAVYVGYDAIENEFKVPIF 113 (366)
T ss_pred HHHHHHHHHCCeEEecCCCeEEEecHHHHhhcCCCCcc
Confidence 356677777799999999997 778887777777743
No 90
>PRK10376 putative oxidoreductase; Provisional
Probab=22.21 E-value=38 Score=25.00 Aligned_cols=14 Identities=29% Similarity=0.442 Sum_probs=10.9
Q ss_pred hhhccCCCCC-CcHH
Q 034912 6 EFWDTAPHYG-GRKE 19 (79)
Q Consensus 6 EFwdT~p~~~-Gr~E 19 (79)
-||||++.|+ |..|
T Consensus 55 n~~DTA~~Yg~~~sE 69 (290)
T PRK10376 55 NHIDTSDFYGPHVTN 69 (290)
T ss_pred CeEEChhhcCCCcHH
Confidence 3899999998 5555
No 91
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=22.07 E-value=1e+02 Score=21.01 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=24.8
Q ss_pred CCcHHHHHHHHHHHHhcHHHHHHHHHHcCce
Q 034912 15 GGRKEIWDALRAAAEADLSLAQAIVDSAGVI 45 (79)
Q Consensus 15 ~Gr~EIW~aLraA~e~d~~tAq~ildaA~it 45 (79)
.+|...=.||++|-+.|++.|+..|..|.=.
T Consensus 30 ~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e~ 60 (115)
T PRK10454 30 QARSLAYAALKQAKQGDFAAAKAMMDQSRMA 60 (115)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3567788899999999999999888877543
No 92
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=22.04 E-value=30 Score=26.31 Aligned_cols=15 Identities=40% Similarity=0.685 Sum_probs=11.3
Q ss_pred hhhccCCCCC---CcHHH
Q 034912 6 EFWDTAPHYG---GRKEI 20 (79)
Q Consensus 6 EFwdT~p~~~---Gr~EI 20 (79)
-||||++.|+ |+.|-
T Consensus 58 n~~DTA~~YG~~~g~sE~ 75 (346)
T PRK09912 58 THFDLANNYGPPPGSAEE 75 (346)
T ss_pred CEEEChhhhCCCCCCcHH
Confidence 3788988887 67664
No 93
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=21.65 E-value=1.5e+02 Score=18.05 Aligned_cols=34 Identities=18% Similarity=0.100 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHcCcee----------e----cCCe-eeeeccCCCcccc
Q 034912 31 DLSLAQAIVDSAGVIV----------Q----SADL-TICYDERGAKYEL 64 (79)
Q Consensus 31 d~~tAq~ildaA~itl----------p----~g~L-~~~YDe~G~~Y~l 64 (79)
|++.+..-|.++|+++ | .|.. ..+.|-.||+..|
T Consensus 68 dvd~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~~DPdG~~ie~ 116 (120)
T cd08350 68 DVAALHAEFRAAGLPETGSGIPRITPPEDQPWGMREFALVDPDGNLLRF 116 (120)
T ss_pred CHHHHHHHHHHhCccccccCCCcccCCcCCCCceeEEEEECCCCCEEEe
Confidence 8999999999999973 1 2222 2677777777654
No 94
>PF00039 fn1: Fibronectin type I domain; InterPro: IPR000083 Fibronectin type I repeats are one of the three repeats found in the fibronectin protein. Fibronectin is a plasma protein that binds cell surfaces and various compounds including collagen, fibrin, heparin, DNA, and actin. Type I domain (FN1) is approximately 40 residues in length. Four conserved cysteines are involved in disulphide bonds. The 3D structure of the FN1 domain has been determined [, , ]. It consists of two antiparallel beta-sheets, first a double-stranded one, that is linked by a disulphide bond to a triple-stranded beta-sheet. The second conserved disulphide bridge links the C-terminal adjacent strands of the domain. In human tissue plasminogen activator chain A the FN1 domain together with the following epidermal growth factor (EGF)-like domain are involved in fibrin-binding []. It has been suggested that these two modules form a single structural and functional unit []. The two domains keep their specific tertiary structure, but interact intimately to bury a hydrophobic core; the inter-module linker makes up the third strand of the EGF-module's major beta-sheet.; GO: 0005576 extracellular region; PDB: 2RKY_A 1FBR_A 2RL0_D 3M7P_A 3MQL_A 3ZRZ_A 2RKZ_F 2CKU_A 2CG6_A 3CAL_C ....
Probab=21.57 E-value=44 Score=18.66 Aligned_cols=12 Identities=33% Similarity=1.016 Sum_probs=9.5
Q ss_pred eec-cCCCccccC
Q 034912 54 CYD-ERGAKYELP 65 (79)
Q Consensus 54 ~YD-e~G~~Y~lP 65 (79)
||| +.|..|++=
T Consensus 1 C~d~~t~~~Y~vg 13 (39)
T PF00039_consen 1 CFDPDTGQFYQVG 13 (39)
T ss_dssp EEETTTTEEEETT
T ss_pred CCcCCCccEEeCC
Confidence 789 669999864
No 95
>cd01414 SAICAR_synt_Sc non-metazoan 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. Eukaryotic, bacterial, and archaeal group of SAICAR synthetases represented by the Saccharomyces cerevisiae (Sc) enzyme, mostly absent in metazoans. SAICAR synthetase catalyzes the seventh step of the de novo biosynthesis of purine nucleotides (also reported as eighth step). It converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=21.45 E-value=2.8e+02 Score=21.43 Aligned_cols=44 Identities=27% Similarity=0.312 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHcCceeecCCeeeeeccCCCc
Q 034912 18 KEIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAK 61 (79)
Q Consensus 18 ~EIW~aLraA~e~d~~tAq~ildaA~itlp~g~L~~~YDe~G~~ 61 (79)
++-++.|+..+-.=.+.+..+...+||+|...-|--.+|+.|..
T Consensus 162 ~~~~~~i~~~al~i~~~l~~~~~~~GiiLvD~K~EFG~~~~g~i 205 (279)
T cd01414 162 AELADELRELALALYERAAEYAAKRGLILADTKFEFGLDENGEI 205 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeeeEeeEcCCCcE
Confidence 35567777766666788899999999999999988666766643
No 96
>PF08350 DUF1724: Domain of unknown function (DUF1724); InterPro: IPR013561 This domain of unknown function has so far only been found at the C terminus of archaean proteins, including several transcriptional regulators of the ArsR family (see IPR001845 from INTERPRO).
Probab=21.35 E-value=98 Score=18.75 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=19.0
Q ss_pred CceeecCCee-eeeccCCCccccCceeeeC
Q 034912 43 GVIVQSADLT-ICYDERGAKYELPKYVLSE 71 (79)
Q Consensus 43 ~itlp~g~L~-~~YDe~G~~Y~lP~~vis~ 71 (79)
.++|-..-|. +.|+..|. |+- ..++|.
T Consensus 15 ~l~VTD~f~~l~Lf~~~G~-yD~-~~lis~ 42 (64)
T PF08350_consen 15 ALTVTDKFMSLSLFNKDGR-YDH-QDLISF 42 (64)
T ss_pred EEEEEcCeEEEEEEcCCCc-CcC-eeEEEC
Confidence 4455555566 89999999 777 777764
No 97
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=21.35 E-value=1.4e+02 Score=17.88 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=23.3
Q ss_pred hcHHHHHHHHHHcCceeecC---------CeeeeeccCCCcccc
Q 034912 30 ADLSLAQAIVDSAGVIVQSA---------DLTICYDERGAKYEL 64 (79)
Q Consensus 30 ~d~~tAq~ildaA~itlp~g---------~L~~~YDe~G~~Y~l 64 (79)
.|++.+...|.++|+.+-.+ .-..+.|-.|+..++
T Consensus 72 ~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~ 115 (121)
T cd07266 72 EDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEF 115 (121)
T ss_pred HHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEE
Confidence 37888888888899876321 222567777777663
No 98
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=21.32 E-value=1.7e+02 Score=17.40 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=23.4
Q ss_pred hcHHHHHHHHHHcCceeecCC------------eeeeeccCCCcccc
Q 034912 30 ADLSLAQAIVDSAGVIVQSAD------------LTICYDERGAKYEL 64 (79)
Q Consensus 30 ~d~~tAq~ildaA~itlp~g~------------L~~~YDe~G~~Y~l 64 (79)
.|++.+..-|.++|+++-.+. -.-+.|-.||.-+|
T Consensus 76 ~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~ 122 (125)
T cd08357 76 EEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEF 122 (125)
T ss_pred HHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEE
Confidence 588889999999999764321 12466666665543
No 99
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=21.08 E-value=1.1e+02 Score=17.21 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=13.3
Q ss_pred cHHHHHHHHHHcCceee
Q 034912 31 DLSLAQAIVDSAGVIVQ 47 (79)
Q Consensus 31 d~~tAq~ildaA~itlp 47 (79)
.++.|+.+|.++|+++.
T Consensus 10 ~~~~a~~~l~~~g~~~~ 26 (63)
T PF03793_consen 10 TYDEAKSILEAAGLTVN 26 (63)
T ss_dssp BHHHHHHHHHHTT-EEE
T ss_pred cHHHHHHHHHHCCCEEE
Confidence 57899999999999543
No 100
>PRK11087 oxidative stress defense protein; Provisional
Probab=20.94 E-value=1.2e+02 Score=22.06 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=26.2
Q ss_pred HHHHHHHhcHHHHHHHHHHcCceeecCCee-eeecc
Q 034912 23 ALRAAAEADLSLAQAIVDSAGVIVQSADLT-ICYDE 57 (79)
Q Consensus 23 aLraA~e~d~~tAq~ildaA~itlp~g~L~-~~YDe 57 (79)
+|+.|++..-+.|+.+-.++|.+| |.+- ..++.
T Consensus 153 al~~Av~dAr~kA~~~A~~~G~~l--g~v~~I~~~~ 186 (231)
T PRK11087 153 ARKAAIKDAIQQAQSLAKGFGEKL--GPVYSIRYHV 186 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCc--ccEEEEEcCC
Confidence 677777888999999999999998 6664 55543
No 101
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=20.88 E-value=1e+02 Score=24.34 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=20.6
Q ss_pred CcHHHHHHHHHHHHh--------cHHHHHHHHHHc
Q 034912 16 GRKEIWDALRAAAEA--------DLSLAQAIVDSA 42 (79)
Q Consensus 16 Gr~EIW~aLraA~e~--------d~~tAq~ildaA 42 (79)
|-.+==+||++|+.+ |..||+.||...
T Consensus 286 gG~~K~~AI~aaL~gg~~n~LITDe~tA~~lL~~~ 320 (321)
T COG2390 286 GGESKAEAILAALRGGYINVLITDEATAEALLEAD 320 (321)
T ss_pred CCcccHHHHHHHHhCCCCCEEEeCHHHHHHHHhcc
Confidence 334445789999884 999999999754
No 102
>cd08518 PBP2_NikA_DppA_OppA_like_19 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=20.79 E-value=1.1e+02 Score=23.51 Aligned_cols=30 Identities=27% Similarity=0.244 Sum_probs=20.4
Q ss_pred cHHHHHHHHHHcCceeecCCeeeeeccCCCccc
Q 034912 31 DLSLAQAIVDSAGVIVQSADLTICYDERGAKYE 63 (79)
Q Consensus 31 d~~tAq~ildaA~itlp~g~L~~~YDe~G~~Y~ 63 (79)
|++.|+++|+.||.+.-.+.. ++..|....
T Consensus 298 d~~~Ak~lL~eaG~~~~~~g~---~~~~g~~l~ 327 (464)
T cd08518 298 DPEKAKKILEEAGWKDGDDGG---REKDGQKAE 327 (464)
T ss_pred CHHHHHHHHHHcCCCcCCCCe---eccCCcEEE
Confidence 799999999999987543332 344454433
No 103
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=20.25 E-value=74 Score=26.80 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=18.2
Q ss_pred cCceeecCCeeeeeccCCCcc
Q 034912 42 AGVIVQSADLTICYDERGAKY 62 (79)
Q Consensus 42 A~itlp~g~L~~~YDe~G~~Y 62 (79)
.-+.+..+-++=+|||.|++|
T Consensus 32 ~Pl~Iv~~~~~ylyDe~G~ry 52 (442)
T KOG1404|consen 32 KPLVIVRGEGQYLYDEEGRRY 52 (442)
T ss_pred CCceEEecceEEEEcCCCcee
Confidence 456778889999999999999
No 104
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=20.16 E-value=54 Score=28.02 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=25.2
Q ss_pred HHHHHHHHcCceeecCCeeeeeccCCCccccCcee
Q 034912 34 LAQAIVDSAGVIVQSADLTICYDERGAKYELPKYV 68 (79)
Q Consensus 34 tAq~ildaA~itlp~g~L~~~YDe~G~~Y~lP~~v 68 (79)
..+.|+..+==-=|-.=.|++-|=.|++|+||.||
T Consensus 419 ~q~~if~~~THFNPVDLVCgvkdykG~kFdL~~fv 453 (513)
T PF14134_consen 419 EQKEIFKNSTHFNPVDLVCGVKDYKGEKFDLPDFV 453 (513)
T ss_pred HHHHHHHcCCCCCccceEeeccCCCCCcCCchhcc
Confidence 34456655544445444589999999999999997
No 105
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.02 E-value=1.8e+02 Score=21.94 Aligned_cols=17 Identities=59% Similarity=0.788 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHHHH
Q 034912 13 HYGGRKEIWDALRAAAE 29 (79)
Q Consensus 13 ~~~Gr~EIW~aLraA~e 29 (79)
+|+||.||=+|.+..++
T Consensus 141 ~Y~gr~EI~~A~~~~~~ 157 (243)
T PRK14829 141 NYGGRAEIADAAAAIAR 157 (243)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 59999999999988764
Done!