BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034916
         (79 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q7VD75|SYP_PROMA Proline--tRNA ligase OS=Prochlorococcus marinus (strain SARG /
           CCMP1375 / SS120) GN=proS PE=3 SV=1
          Length = 603

 Score = 33.1 bits (74), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 18/97 (18%)

Query: 1   MNPQTDKIVRRTTMVATAV-----------ASYFLLTADYGPEPNALDPIKKAILSAESS 49
           MN   +KI +R  +   AV           +  F++TA+ G +   L P KK   + E +
Sbjct: 180 MNDAYEKIFKRCGLETVAVDADSGAIGGAESREFMVTAEAGEDLILLSPDKKYAANQEKA 239

Query: 50  VKEF---IFGSKKEP----REESQTAKLSSDNSKEHP 79
           + +F   IF  KKEP        +T K   DN   HP
Sbjct: 240 ISKFADPIFLDKKEPCIIQTNGQRTIKELCDNQGFHP 276


>sp|Q056Y0|RL9_BUCCC 50S ribosomal protein L9 OS=Buchnera aphidicola subsp. Cinara
          cedri (strain Cc) GN=rplI PE=3 SV=1
          Length = 149

 Score = 29.3 bits (64), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 24 LLTADYGPEPNALDPIKKAILSAESSVKEFIFGSKKEPREESQTAK 69
          L+T   G   N L P++KA+L+   ++K F    KK   EE Q AK
Sbjct: 18 LITVKNGYARNYLIPLEKALLATSENIKIF---EKKRLFEEQQEAK 60


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.123    0.330 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,044,281
Number of Sequences: 539616
Number of extensions: 718246
Number of successful extensions: 1438
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1438
Number of HSP's gapped (non-prelim): 2
length of query: 79
length of database: 191,569,459
effective HSP length: 50
effective length of query: 29
effective length of database: 164,588,659
effective search space: 4773071111
effective search space used: 4773071111
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)