Query 034916
Match_columns 79
No_of_seqs 12 out of 14
Neff 1.8
Searched_HMMs 46136
Date Fri Mar 29 07:39:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5454 Predicted secreted pro 61.3 10 0.00022 26.0 2.8 27 1-27 45-72 (89)
2 PF11947 DUF3464: Protein of u 56.2 16 0.00035 26.3 3.3 31 5-35 58-97 (153)
3 TIGR00198 cat_per_HPI catalase 53.8 22 0.00047 31.3 4.2 36 1-36 366-407 (716)
4 PF07330 DUF1467: Protein of u 49.9 20 0.00043 23.5 2.7 29 2-30 46-74 (85)
5 PHA02337 putative high light i 48.8 35 0.00075 19.8 3.3 22 1-22 1-22 (35)
6 PF08013 Tagatose_6_P_K: Tagat 47.4 15 0.00033 30.5 2.2 35 21-55 83-118 (424)
7 COG1943 Transposase and inacti 44.4 15 0.00033 24.8 1.5 25 19-47 106-130 (136)
8 KOG0979 Structural maintenance 44.4 9.4 0.0002 35.2 0.6 27 1-28 996-1026(1072)
9 PF11297 DUF3098: Protein of u 41.1 24 0.00051 22.8 1.9 24 15-38 15-38 (69)
10 PRK15061 catalase/hydroperoxid 39.5 51 0.0011 29.2 4.3 54 1-54 372-459 (726)
11 KOG3894 SNARE protein Syntaxin 39.4 24 0.00053 28.5 2.2 24 9-32 293-316 (316)
12 PF01277 Oleosin: Oleosin; In 38.5 62 0.0013 22.6 3.8 32 22-53 79-110 (118)
13 PF11666 DUF2933: Protein of u 34.8 27 0.00058 21.5 1.4 16 14-29 2-17 (55)
14 KOG3449 60S acidic ribosomal p 34.4 35 0.00077 24.1 2.1 27 18-45 3-29 (112)
15 KOG2940 Predicted methyltransf 34.3 34 0.00075 27.9 2.3 46 6-53 257-317 (325)
16 PRK15396 murein lipoprotein; P 33.6 37 0.0008 22.1 2.0 17 11-27 4-20 (78)
17 KOG0673 Thymidylate synthase [ 28.5 43 0.00094 27.0 2.0 44 18-61 206-267 (293)
18 cd00649 catalase_peroxidase_1 27.6 77 0.0017 26.2 3.3 38 1-38 359-402 (409)
19 TIGR02764 spore_ybaN_pdaB poly 27.0 20 0.00044 23.9 -0.1 35 23-57 8-42 (191)
20 PF07077 DUF1345: Protein of u 26.4 81 0.0018 22.5 2.9 21 5-25 79-99 (180)
21 PF02238 COX7a: Cytochrome c o 26.3 96 0.0021 19.2 2.9 18 4-21 24-41 (56)
22 PRK15052 D-tagatose-1,6-bispho 24.6 43 0.00093 27.9 1.4 34 22-55 81-115 (421)
23 PF07516 SecA_SW: SecA Wing an 24.0 23 0.00049 24.8 -0.3 22 39-60 7-28 (214)
24 PRK09509 fieF ferrous iron eff 23.4 1E+02 0.0022 22.5 3.0 19 1-19 1-19 (299)
25 PF09047 MEF2_binding: MEF2 bi 23.2 46 0.001 19.5 1.0 11 39-49 17-27 (35)
26 TIGR02884 spore_pdaA delta-lac 22.9 25 0.00054 24.8 -0.2 24 23-46 39-62 (224)
27 PF02696 UPF0061: Uncharacteri 22.8 69 0.0015 26.5 2.2 7 25-31 265-271 (487)
28 TIGR00302 phosphoribosylformyl 22.3 58 0.0013 20.0 1.4 18 30-47 8-25 (80)
29 cd04411 Ribosomal_P1_P2_L12p R 22.2 69 0.0015 21.4 1.8 35 18-54 3-37 (105)
30 PF04142 Nuc_sug_transp: Nucle 22.2 1E+02 0.0022 22.5 2.8 26 1-26 41-66 (244)
31 PF07615 Ykof: YKOF-related Fa 21.8 39 0.00085 21.2 0.5 17 32-48 13-29 (81)
32 KOG3356 Predicted membrane pro 21.8 61 0.0013 23.9 1.6 17 12-28 30-46 (147)
33 COG5087 RTT109 Uncharacterized 20.0 69 0.0015 26.5 1.7 33 33-68 269-301 (349)
34 KOG4534 Uncharacterized conser 20.0 69 0.0015 26.5 1.7 33 33-68 269-301 (349)
35 cd05833 Ribosomal_P2 Ribosomal 20.0 88 0.0019 21.1 1.9 34 19-53 4-37 (109)
No 1
>COG5454 Predicted secreted protein [Function unknown]
Probab=61.29 E-value=10 Score=26.02 Aligned_cols=27 Identities=30% Similarity=0.440 Sum_probs=21.1
Q ss_pred CCchhhHHHHHHHHhhHHHHH-hhHhhc
Q 034916 1 MNPQTDKIVRRTTMVATAVAS-YFLLTA 27 (79)
Q Consensus 1 m~P~tdk~Vrr~tmvat~~as-YflLTa 27 (79)
|+|+.-|.|-|||++++++.. |++||-
T Consensus 45 ~~p~~~R~vl~TT~~savi~gl~y~lt~ 72 (89)
T COG5454 45 ANPHLLRAVLRTTVASAVIFGLFYGLTH 72 (89)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999887754 455554
No 2
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=56.17 E-value=16 Score=26.29 Aligned_cols=31 Identities=26% Similarity=0.420 Sum_probs=24.1
Q ss_pred hhHHHHHHHH---------hhHHHHHhhHhhccCCCCCCC
Q 034916 5 TDKIVRRTTM---------VATAVASYFLLTADYGPEPNA 35 (79)
Q Consensus 5 tdk~Vrr~tm---------vat~~asYflLTaDYgp~pn~ 35 (79)
++|++||..+ |++.+++|+|++.+...-|++
T Consensus 58 s~RM~rRm~~~~GiP~~lG~~~f~~~y~l~~~~~~dvP~~ 97 (153)
T PF11947_consen 58 SNRMLRRMAVFVGIPTALGVAVFVVFYYLKSRQIVDVPPW 97 (153)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHhccccccCch
Confidence 6889999765 567789999999876665654
No 3
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=53.81 E-value=22 Score=31.26 Aligned_cols=36 Identities=31% Similarity=0.547 Sum_probs=27.4
Q ss_pred CCchhhHHHHHH-----HHhhHHHHHhhHhh-ccCCCCCCCC
Q 034916 1 MNPQTDKIVRRT-----TMVATAVASYFLLT-ADYGPEPNAL 36 (79)
Q Consensus 1 m~P~tdk~Vrr~-----tmvat~~asYflLT-aDYgp~pn~l 36 (79)
+||++.++|+|. .+....+.|++=|+ .|-||.-.|+
T Consensus 366 ~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~~y~ 407 (716)
T TIGR00198 366 FDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKSRYI 407 (716)
T ss_pred cCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchhhhc
Confidence 478999999984 56777777887666 8999875444
No 4
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=49.91 E-value=20 Score=23.53 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=21.6
Q ss_pred CchhhHHHHHHHHhhHHHHHhhHhhccCC
Q 034916 2 NPQTDKIVRRTTMVATAVASYFLLTADYG 30 (79)
Q Consensus 2 ~P~tdk~Vrr~tmvat~~asYflLTaDYg 30 (79)
||+--|.+.+||++|+++-.-+++.--+|
T Consensus 46 ~~~l~rk~~~TTiiaavi~~~~~~~~~~g 74 (85)
T PF07330_consen 46 NPRLKRKALITTIIAAVIFAIIYLIIVSG 74 (85)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67788888999999998766665554444
No 5
>PHA02337 putative high light inducible protein
Probab=48.82 E-value=35 Score=19.76 Aligned_cols=22 Identities=18% Similarity=0.216 Sum_probs=18.1
Q ss_pred CCchhhHHHHHHHHhhHHHHHh
Q 034916 1 MNPQTDKIVRRTTMVATAVASY 22 (79)
Q Consensus 1 m~P~tdk~Vrr~tmvat~~asY 22 (79)
++|++|++=-|.+|++-+.+.-
T Consensus 1 ft~~aE~~NGRlAMiGfv~~~~ 22 (35)
T PHA02337 1 MTPEAEIFNGWLAMIGFVAAVG 22 (35)
T ss_pred CccHHHHHhhHHHHHHHHHHHH
Confidence 5889999999999998765543
No 6
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=47.42 E-value=15 Score=30.50 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=30.8
Q ss_pred HhhHhhccC-CCCCCCCchHHHHHhhhhhhhhhhhc
Q 034916 21 SYFLLTADY-GPEPNALDPIKKAILSAESSVKEFIF 55 (79)
Q Consensus 21 sYflLTaDY-gp~pn~ldPIkk~ilSa~~sVKefif 55 (79)
.-.+|..|+ ||.|.---|--.+|..|...|+.|+=
T Consensus 83 ~~iiLGGDHLGP~~w~~lpaeeAM~~A~~li~ayv~ 118 (424)
T PF08013_consen 83 DRIILGGDHLGPNPWQHLPAEEAMAKAKELIRAYVE 118 (424)
T ss_dssp GGEEEEEEEESSCCCTTSBHHHHHHHHHHHHHHHHC
T ss_pred hhEEecCCCCCcccccCCCHHHHHHHHHHHHHHHHH
Confidence 456888997 89999889999999999999999873
No 7
>COG1943 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=44.42 E-value=15 Score=24.85 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=20.6
Q ss_pred HHHhhHhhccCCCCCCCCchHHHHHhhhh
Q 034916 19 VASYFLLTADYGPEPNALDPIKKAILSAE 47 (79)
Q Consensus 19 ~asYflLTaDYgp~pn~ldPIkk~ilSa~ 47 (79)
.-+||.-|.+|.+ +||||+-|...+
T Consensus 106 ~~~yf~~tvg~v~----~~~vk~yi~~q~ 130 (136)
T COG1943 106 DRGYFVSTVGYVT----LEPVKEYIENQP 130 (136)
T ss_pred cchHHHHhcCCcc----HHHHHHHHHhCC
Confidence 4689999999976 799999887644
No 8
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=44.35 E-value=9.4 Score=35.17 Aligned_cols=27 Identities=37% Similarity=0.715 Sum_probs=22.1
Q ss_pred CCchhhHHHHHHHHhhHH----HHHhhHhhcc
Q 034916 1 MNPQTDKIVRRTTMVATA----VASYFLLTAD 28 (79)
Q Consensus 1 m~P~tdk~Vrr~tmvat~----~asYflLTaD 28 (79)
|||+.+|+|-+ .||+++ |-=|||+|.-
T Consensus 996 MDp~NER~Vh~-~mV~~ac~entsQyFliTPK 1026 (1072)
T KOG0979|consen 996 MDPRNERKVHD-IMVNMACKENTSQYFLITPK 1026 (1072)
T ss_pred CCchhHHHHHH-HHHHHhhcCCCcceEEecch
Confidence 99999999987 467776 6679999853
No 9
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=41.11 E-value=24 Score=22.80 Aligned_cols=24 Identities=21% Similarity=0.607 Sum_probs=20.2
Q ss_pred hhHHHHHhhHhhccCCCCCCCCch
Q 034916 15 VATAVASYFLLTADYGPEPNALDP 38 (79)
Q Consensus 15 vat~~asYflLTaDYgp~pn~ldP 38 (79)
++.++..|+|.+.+--.+||.-||
T Consensus 15 ~~vIilGfilMsg~~s~dp~~fn~ 38 (69)
T PF11297_consen 15 IAVIILGFILMSGGGSDDPNVFNP 38 (69)
T ss_pred HHHHHHHHHheeCCCCCCccccCc
Confidence 355678999999998889999887
No 10
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=39.45 E-value=51 Score=29.23 Aligned_cols=54 Identities=31% Similarity=0.549 Sum_probs=37.4
Q ss_pred CCchhhHHHHHHH-----HhhHHHHHhh-HhhccCCCCCCCCc----------------------------hHHHHHhhh
Q 034916 1 MNPQTDKIVRRTT-----MVATAVASYF-LLTADYGPEPNALD----------------------------PIKKAILSA 46 (79)
Q Consensus 1 m~P~tdk~Vrr~t-----mvat~~asYf-lLTaDYgp~pn~ld----------------------------PIkk~ilSa 46 (79)
+||.+.++|+|.. +-.....++| |+.-|-||.-.|+- -+|.+|+++
T Consensus 372 ~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~ry~g~~vp~e~~~wqdp~p~~~~~~~~~~di~~lk~~i~~~ 451 (726)
T PRK15061 372 FDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSRYLGPEVPKEDLIWQDPVPAVDHELIDDADIAALKAKILAS 451 (726)
T ss_pred cCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhhhcCCCCCcccccccCCCCCCCcccCCHHHHHHHHHHHHhc
Confidence 5899999999853 5555555555 55689997644432 257888888
Q ss_pred hhhhhhhh
Q 034916 47 ESSVKEFI 54 (79)
Q Consensus 47 ~~sVKefi 54 (79)
-.||-+++
T Consensus 452 gl~~~~LV 459 (726)
T PRK15061 452 GLSVSELV 459 (726)
T ss_pred CCcHHHHH
Confidence 88887765
No 11
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.39 E-value=24 Score=28.47 Aligned_cols=24 Identities=25% Similarity=0.186 Sum_probs=21.0
Q ss_pred HHHHHHhhHHHHHhhHhhccCCCC
Q 034916 9 VRRTTMVATAVASYFLLTADYGPE 32 (79)
Q Consensus 9 Vrr~tmvat~~asYflLTaDYgp~ 32 (79)
.|+.+...+++.|++||--||++.
T Consensus 293 ~r~~~lf~llvlsf~lLFldwy~~ 316 (316)
T KOG3894|consen 293 LRVFLLFFLLVLSFSLLFLDWYYK 316 (316)
T ss_pred chhHHHHHHHHHHHHHHHHhhcCC
Confidence 467888999999999999999973
No 12
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=38.49 E-value=62 Score=22.62 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=26.6
Q ss_pred hhHhhccCCCCCCCCchHHHHHhhhhhhhhhh
Q 034916 22 YFLLTADYGPEPNALDPIKKAILSAESSVKEF 53 (79)
Q Consensus 22 YflLTaDYgp~pn~ldPIkk~ilSa~~sVKef 53 (79)
|=.++.-+.+.||.+|.-|++|......|+|.
T Consensus 79 ~~y~rg~~~~~~~q~d~Ak~ri~d~a~~v~~k 110 (118)
T PF01277_consen 79 YNYFRGRHPPGPDQLDYAKRRIADTASYVGQK 110 (118)
T ss_pred HHHhccCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 44456677889999999999999998888874
No 13
>PF11666 DUF2933: Protein of unknown function (DUF2933); InterPro: IPR021682 This bacterial family of proteins has no known function.
Probab=34.75 E-value=27 Score=21.47 Aligned_cols=16 Identities=38% Similarity=0.550 Sum_probs=11.6
Q ss_pred HhhHHHHHhhHhhccC
Q 034916 14 MVATAVASYFLLTADY 29 (79)
Q Consensus 14 mvat~~asYflLTaDY 29 (79)
++..++|+|||++-.-
T Consensus 2 l~~~~~~a~~Ll~eh~ 17 (55)
T PF11666_consen 2 LGFLAIAAYFLLPEHR 17 (55)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4567788899987543
No 14
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=34.44 E-value=35 Score=24.10 Aligned_cols=27 Identities=41% Similarity=0.475 Sum_probs=21.1
Q ss_pred HHHHhhHhhccCCCCCCCCchHHHHHhh
Q 034916 18 AVASYFLLTADYGPEPNALDPIKKAILS 45 (79)
Q Consensus 18 ~~asYflLTaDYgp~pn~ldPIkk~ilS 45 (79)
.+|+|+|++-=+--.|++-| ||+.+.|
T Consensus 3 yvaAYLL~~lgGn~~psa~D-ikkIl~s 29 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASD-IKKILES 29 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHH-HHHHHHH
Confidence 47899999988888888866 7776654
No 15
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=34.29 E-value=34 Score=27.89 Aligned_cols=46 Identities=30% Similarity=0.465 Sum_probs=31.4
Q ss_pred hHHHHHHHHhhHHHHHhhHhhccCC---------------CCCCCCchHHHHHhhhhhhhhhh
Q 034916 6 DKIVRRTTMVATAVASYFLLTADYG---------------PEPNALDPIKKAILSAESSVKEF 53 (79)
Q Consensus 6 dk~Vrr~tmvat~~asYflLTaDYg---------------p~pn~ldPIkk~ilSa~~sVKef 53 (79)
.++.+|-||||++..---+...+.| |.||-+-|.++. ||.-|+||.
T Consensus 257 n~~l~Ret~vAaaAiY~smya~e~~~iPATfqiiy~iGWk~~~s~pq~~~RG--s~tVS~~dl 317 (325)
T KOG2940|consen 257 NAILNRETMVAAAAIYQSMYATEDGTIPATFQIIYMIGWKPHPSQPQAAERG--SATVSFKDL 317 (325)
T ss_pred CccccHHHHHHHHHHHHHHhcCCCCCcceeEEEEEEEccCcCCCCCChhhcC--CceEeHHHH
Confidence 3578999999987654344444444 567888887774 677777773
No 16
>PRK15396 murein lipoprotein; Provisional
Probab=33.61 E-value=37 Score=22.07 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=12.3
Q ss_pred HHHHhhHHHHHhhHhhc
Q 034916 11 RTTMVATAVASYFLLTA 27 (79)
Q Consensus 11 r~tmvat~~asYflLTa 27 (79)
...++++++.+.+||++
T Consensus 4 ~kl~l~av~ls~~LLaG 20 (78)
T PRK15396 4 TKLVLGAVILGSTLLAG 20 (78)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 35677888887777764
No 17
>KOG0673 consensus Thymidylate synthase [Nucleotide transport and metabolism]
Probab=28.54 E-value=43 Score=27.03 Aligned_cols=44 Identities=18% Similarity=0.346 Sum_probs=32.5
Q ss_pred HHHHhhHhhc------cCCCC------------CCCCchHHHHHhhhhhhhhhhhccCCCCc
Q 034916 18 AVASYFLLTA------DYGPE------------PNALDPIKKAILSAESSVKEFIFGSKKEP 61 (79)
Q Consensus 18 ~~asYflLTa------DYgp~------------pn~ldPIkk~ilSa~~sVKefifgskkes 61 (79)
-.|||-|||- |++|- -|-+||+|+++...+..+--..+-.+++.
T Consensus 206 nIASYsLLT~miAhv~gl~pgdfiH~lGdahvy~~Hv~al~~Ql~r~PrpFPkl~i~~~~k~ 267 (293)
T KOG0673|consen 206 NIASYSLLTCMIAHVCGLKPGDFIHVLGDAHVYKDHVDALQEQLQRPPRPFPKLKINPEVKD 267 (293)
T ss_pred hhHHHHHHHHHHHHHhCCCCCceEEecchhhhhHHHHHHHHHHHhcCCCCCCceeecccccc
Confidence 3689999983 55553 25689999999999988877666665544
No 18
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=27.61 E-value=77 Score=26.21 Aligned_cols=38 Identities=34% Similarity=0.638 Sum_probs=29.3
Q ss_pred CCchhhHHHHHH-----HHhhHHHHHhhHhh-ccCCCCCCCCch
Q 034916 1 MNPQTDKIVRRT-----TMVATAVASYFLLT-ADYGPEPNALDP 38 (79)
Q Consensus 1 m~P~tdk~Vrr~-----tmvat~~asYflLT-aDYgp~pn~ldP 38 (79)
+||.+.++|+|. .+-.....|++=|+ .|-||.-.|+-|
T Consensus 359 ~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g~ 402 (409)
T cd00649 359 FDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLGP 402 (409)
T ss_pred cCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcCC
Confidence 478899999985 46667777777665 999998777755
No 19
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=27.00 E-value=20 Score=23.86 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=21.2
Q ss_pred hHhhccCCCCCCCCchHHHHHhhhhhhhhhhhccC
Q 034916 23 FLLTADYGPEPNALDPIKKAILSAESSVKEFIFGS 57 (79)
Q Consensus 23 flLTaDYgp~pn~ldPIkk~ilSa~~sVKefifgs 57 (79)
..||-|.||.|++...+-..+....-..-=|+-|.
T Consensus 8 V~LTFDDgp~~~~t~~~l~~L~~~~ikaTfFv~g~ 42 (191)
T TIGR02764 8 IALTFDISWGNDYTEPILDTLKEYDVKATFFLSGS 42 (191)
T ss_pred EEEEEECCCCcccHHHHHHHHHHcCCCEEEEeccH
Confidence 45899999998877666655544432222244443
No 20
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=26.42 E-value=81 Score=22.49 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=14.7
Q ss_pred hhHHHHHHHHhhHHHHHhhHh
Q 034916 5 TDKIVRRTTMVATAVASYFLL 25 (79)
Q Consensus 5 tdk~Vrr~tmvat~~asYflL 25 (79)
..+...-..-++|++.|++++
T Consensus 79 ~~~~~~~~la~~tv~~sW~~i 99 (180)
T PF07077_consen 79 AAKALHIALALATVVLSWLLI 99 (180)
T ss_pred chhHHHHHHHHHHHHHHHHHH
Confidence 355556666678888888876
No 21
>PF02238 COX7a: Cytochrome c oxidase subunit VIIa; InterPro: IPR003177 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. This family is composed of the heart and liver isoforms of cytochrome c oxidase subunit VIIa. ; GO: 0004129 cytochrome-c oxidase activity, 0009055 electron carrier activity, 0005746 mitochondrial respiratory chain; PDB: 2DYS_J 3AG3_W 3AG1_J 1OCC_J 3ABL_J 3AG4_J 3ABM_J 2EIL_W 3AG2_W 2EIM_W ....
Probab=26.28 E-value=96 Score=19.18 Aligned_cols=18 Identities=33% Similarity=0.373 Sum_probs=13.4
Q ss_pred hhhHHHHHHHHhhHHHHH
Q 034916 4 QTDKIVRRTTMVATAVAS 21 (79)
Q Consensus 4 ~tdk~Vrr~tmvat~~as 21 (79)
-.|+++-|+||..|++++
T Consensus 24 ~~D~~Ly~~Tm~L~~~gt 41 (56)
T PF02238_consen 24 YMDDILYRVTMPLTVAGT 41 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHH
Confidence 467888899987776554
No 22
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=24.55 E-value=43 Score=27.91 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=28.9
Q ss_pred hhHhhccC-CCCCCCCchHHHHHhhhhhhhhhhhc
Q 034916 22 YFLLTADY-GPEPNALDPIKKAILSAESSVKEFIF 55 (79)
Q Consensus 22 YflLTaDY-gp~pn~ldPIkk~ilSa~~sVKefif 55 (79)
-++|..|+ ||.|=--+|...+|..|..+|..|+-
T Consensus 81 ~iiLggDHlGPn~Wq~~pa~eAM~~A~~li~ayV~ 115 (421)
T PRK15052 81 RIILGGDHLGPNCWQQEPADAAMEKSVELVKAYVR 115 (421)
T ss_pred cEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHH
Confidence 45788998 67777788999999999999999873
No 23
>PF07516 SecA_SW: SecA Wing and Scaffold domain; InterPro: IPR011116 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner. This domain is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.; GO: 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 2IPC_D 3JUX_A 3DIN_B ....
Probab=23.97 E-value=23 Score=24.80 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=19.4
Q ss_pred HHHHHhhhhhhhhhhhccCCCC
Q 034916 39 IKKAILSAESSVKEFIFGSKKE 60 (79)
Q Consensus 39 Ikk~ilSa~~sVKefifgskke 60 (79)
|.++|++||..|..+-|.++|.
T Consensus 7 i~~~Ie~aQkkvE~~nf~~Rk~ 28 (214)
T PF07516_consen 7 ISKSIEKAQKKVEGRNFDIRKN 28 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHH
Confidence 6899999999999999988774
No 24
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=23.35 E-value=1e+02 Score=22.48 Aligned_cols=19 Identities=37% Similarity=0.562 Sum_probs=14.6
Q ss_pred CCchhhHHHHHHHHhhHHH
Q 034916 1 MNPQTDKIVRRTTMVATAV 19 (79)
Q Consensus 1 m~P~tdk~Vrr~tmvat~~ 19 (79)
||+|-++.++|.+.++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (299)
T PRK09509 1 MNQSYARLVSRAAIAATAM 19 (299)
T ss_pred CCchHHHHHHHHHHHHHHH
Confidence 7887778888888777655
No 25
>PF09047 MEF2_binding: MEF2 binding; InterPro: IPR015134 The myocyte enhancer factor-2 (MEF2) binding domain, predominantly found in the calcineurin-binding protein CABIN 1, adopts an amphipathic alpha-helical structure, which allows it to bind a hydrophobic groove on the MEF2S domain, forming a triple-helical interaction. Interaction of this domain with MEF2 causes repression of transcription []. ; PDB: 1N6J_G.
Probab=23.22 E-value=46 Score=19.53 Aligned_cols=11 Identities=64% Similarity=0.791 Sum_probs=7.8
Q ss_pred HHHHHhhhhhh
Q 034916 39 IKKAILSAESS 49 (79)
Q Consensus 39 Ikk~ilSa~~s 49 (79)
+|.+|+|+|+-
T Consensus 17 lk~~ils~qsa 27 (35)
T PF09047_consen 17 LKSAILSAQSA 27 (35)
T ss_dssp HHHHHHTT-ST
T ss_pred HHHHHhhhHhh
Confidence 57889998874
No 26
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=22.94 E-value=25 Score=24.76 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=16.0
Q ss_pred hHhhccCCCCCCCCchHHHHHhhh
Q 034916 23 FLLTADYGPEPNALDPIKKAILSA 46 (79)
Q Consensus 23 flLTaDYgp~pn~ldPIkk~ilSa 46 (79)
+.||-|+||.+++..-|=..+...
T Consensus 39 VaLTFDDGp~~~~t~~lL~~L~~~ 62 (224)
T TIGR02884 39 IYLTFDNGYENGYTPKILDVLKEK 62 (224)
T ss_pred EEEEEECCCCccchHHHHHHHHHc
Confidence 468999999887765454444433
No 27
>PF02696 UPF0061: Uncharacterized ACR, YdiU/UPF0061 family; InterPro: IPR003846 The proteins in this entry are functionally uncharacterised.
Probab=22.83 E-value=69 Score=26.52 Aligned_cols=7 Identities=71% Similarity=1.217 Sum_probs=6.4
Q ss_pred hhccCCC
Q 034916 25 LTADYGP 31 (79)
Q Consensus 25 LTaDYgp 31 (79)
+|-||||
T Consensus 265 ~TiDYGP 271 (487)
T PF02696_consen 265 ETIDYGP 271 (487)
T ss_pred eEeccCc
Confidence 6899999
No 28
>TIGR00302 phosphoribosylformylglycinamidine synthase, purS protein. In species such as Bacillus subtilis in which FGAM synthetase is split into two ORFs purL and purQ, this small protein, previously called yexA, is required for FGAM synthetase activity. Although the article does not make it clear whether this is a subunit or an accessory protein, it is encoded as part of the operon, which suggests stochiometric amounts, = subunit.
Probab=22.30 E-value=58 Score=20.05 Aligned_cols=18 Identities=33% Similarity=0.263 Sum_probs=13.4
Q ss_pred CCCCCCCchHHHHHhhhh
Q 034916 30 GPEPNALDPIKKAILSAE 47 (79)
Q Consensus 30 gp~pn~ldPIkk~ilSa~ 47 (79)
+++|+.+||.=+++..+-
T Consensus 8 ~~k~gV~Dp~G~ti~~~l 25 (80)
T TIGR00302 8 RLKKGVLDPEGAAIQRAL 25 (80)
T ss_pred EECCCCcChHHHHHHHHH
Confidence 578999999766665543
No 29
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=22.23 E-value=69 Score=21.39 Aligned_cols=35 Identities=31% Similarity=0.377 Sum_probs=24.2
Q ss_pred HHHHhhHhhccCCCCCCCCchHHHHHhhhhhhhhhhh
Q 034916 18 AVASYFLLTADYGPEPNALDPIKKAILSAESSVKEFI 54 (79)
Q Consensus 18 ~~asYflLTaDYgp~pn~ldPIkk~ilSa~~sVKefi 54 (79)
.+++|+|| .|-|-+|+. |=|++.+.++--.|-++.
T Consensus 3 ~v~A~Lll-~~~g~~~ta-~~I~~IL~aaGveVe~~~ 37 (105)
T cd04411 3 YVAAYLLL-HKGGKELTE-DKIKELLSAAGAEIEPER 37 (105)
T ss_pred HHHHHHHH-HhcCCCCCH-HHHHHHHHHcCCCcCHHH
Confidence 35677665 566666776 559999988887777643
No 30
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=22.16 E-value=1e+02 Score=22.47 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=22.1
Q ss_pred CCchhhHHHHHHHHhhHHHHHhhHhh
Q 034916 1 MNPQTDKIVRRTTMVATAVASYFLLT 26 (79)
Q Consensus 1 m~P~tdk~Vrr~tmvat~~asYflLT 26 (79)
|||-+=.+.+-+-++.|+..++++|-
T Consensus 41 ld~~t~qvl~q~kIl~TAl~s~~~L~ 66 (244)
T PF04142_consen 41 LDPSTFQVLSQSKILFTALFSVLLLK 66 (244)
T ss_pred CCHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 57888888899999999999998874
No 31
>PF07615 Ykof: YKOF-related Family; InterPro: IPR011522 This entry represents YkoF-related proteins. YkoF is involved in the hydroxymethyl pyrimidine (HMP) salvage pathway []. The domain is found in pairs in these proteins.; PDB: 1S7H_A 1S99_A 1SBR_B.
Probab=21.85 E-value=39 Score=21.20 Aligned_cols=17 Identities=24% Similarity=0.196 Sum_probs=14.1
Q ss_pred CCCCCchHHHHHhhhhh
Q 034916 32 EPNALDPIKKAILSAES 48 (79)
Q Consensus 32 ~pn~ldPIkk~ilSa~~ 48 (79)
.+||.++|+.+|..+..
T Consensus 13 ~~dy~~~I~~~i~~~~~ 29 (81)
T PF07615_consen 13 TDDYMDVILGAIDRLDD 29 (81)
T ss_dssp STTHHHHHHHHHHHCHH
T ss_pred CccHHHHHHHHHHHHhh
Confidence 46889999999988763
No 32
>KOG3356 consensus Predicted membrane protein [Function unknown]
Probab=21.83 E-value=61 Score=23.87 Aligned_cols=17 Identities=47% Similarity=0.630 Sum_probs=13.9
Q ss_pred HHHhhHHHHHhhHhhcc
Q 034916 12 TTMVATAVASYFLLTAD 28 (79)
Q Consensus 12 ~tmvat~~asYflLTaD 28 (79)
.|+.+-++.||||.|.-
T Consensus 30 mtv~alivvsyflv~~g 46 (147)
T KOG3356|consen 30 MTVYALIVVSYFLVTGG 46 (147)
T ss_pred hHHHHHHHHHHHHhccc
Confidence 46778899999999863
No 33
>COG5087 RTT109 Uncharacterized conserved protein [Function unknown]
Probab=20.04 E-value=69 Score=26.46 Aligned_cols=33 Identities=30% Similarity=0.655 Sum_probs=26.1
Q ss_pred CCCCchHHHHHhhhhhhhhhhhccCCCCcchhhhhh
Q 034916 33 PNALDPIKKAILSAESSVKEFIFGSKKEPREESQTA 68 (79)
Q Consensus 33 pn~ldPIkk~ilSa~~sVKefifgskkeske~s~~~ 68 (79)
-.+.+|.+++++ ++++-|||||-.+.++..-+|
T Consensus 269 ~gvv~p~~R~~~---rtl~K~~fgs~sda~~saiea 301 (349)
T COG5087 269 IGVVDPMERAML---RTLDKYIFGSISDARRSAIEA 301 (349)
T ss_pred ccccchHHHHHH---HHHhhccccchhhhhhhHHHH
Confidence 367899998776 578899999999888775444
No 34
>KOG4534 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.04 E-value=69 Score=26.46 Aligned_cols=33 Identities=30% Similarity=0.655 Sum_probs=26.1
Q ss_pred CCCCchHHHHHhhhhhhhhhhhccCCCCcchhhhhh
Q 034916 33 PNALDPIKKAILSAESSVKEFIFGSKKEPREESQTA 68 (79)
Q Consensus 33 pn~ldPIkk~ilSa~~sVKefifgskkeske~s~~~ 68 (79)
-.+.+|.+++++ ++++-|||||-.+.++..-+|
T Consensus 269 ~gvv~p~~R~~~---rtl~K~~fgs~sda~~saiea 301 (349)
T KOG4534|consen 269 IGVVDPMERAML---RTLDKYIFGSISDARRSAIEA 301 (349)
T ss_pred ccccchHHHHHH---HHHhhccccchhhhhhhHHHH
Confidence 367899998776 578899999999888775444
No 35
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=20.03 E-value=88 Score=21.08 Aligned_cols=34 Identities=29% Similarity=0.351 Sum_probs=22.8
Q ss_pred HHHhhHhhccCCCCCCCCchHHHHHhhhhhhhhhh
Q 034916 19 VASYFLLTADYGPEPNALDPIKKAILSAESSVKEF 53 (79)
Q Consensus 19 ~asYflLTaDYgp~pn~ldPIkk~ilSa~~sVKef 53 (79)
+|+|.|+..=-..+|+. |=|++.|.++--.|-+|
T Consensus 4 vaAylL~~l~g~~~pTa-~dI~~IL~AaGveVe~~ 37 (109)
T cd05833 4 VAAYLLAVLGGNASPSA-ADVKKILGSVGVEVDDE 37 (109)
T ss_pred HHHHHHHHHcCCCCCCH-HHHHHHHHHcCCCccHH
Confidence 67888887654445554 55888888876666553
Done!