Query 034916
Match_columns 79
No_of_seqs 12 out of 14
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 12:26:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034916.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034916hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vli_A Catalase-peroxidase 2; 49.6 13 0.00045 31.3 3.4 53 2-54 378-464 (737)
2 3n3r_A Catalase-peroxidase; E1 47.5 16 0.00055 30.9 3.7 53 2-54 395-481 (748)
3 3dte_A IRRE protein; radiotole 45.9 5.2 0.00018 29.5 0.4 26 21-46 16-41 (301)
4 3ut2_A Catalase-peroxidase 2; 45.2 22 0.00076 30.2 4.1 54 1-54 407-495 (764)
5 1yqw_Q Periplasmic [NIFE] hydr 40.0 42 0.0014 26.3 4.7 42 3-44 96-144 (549)
6 3iz5_v 60S acidic ribosomal pr 31.3 38 0.0013 22.2 2.8 27 19-46 4-30 (113)
7 1wui_L Periplasmic [NIFE] hydr 30.1 76 0.0026 24.6 4.7 42 3-44 87-135 (534)
8 1v54_J Cytochrome C oxidase po 28.4 57 0.0019 19.2 3.0 28 2-29 24-55 (59)
9 3a1y_A 50S ribosomal protein P 27.0 27 0.00091 20.2 1.3 33 19-53 4-36 (58)
10 1z23_A CRK-associated substrat 25.8 1.3E+02 0.0044 21.0 4.9 50 5-54 13-72 (163)
11 1ryl_A Hypothetical protein YF 25.2 64 0.0022 21.5 3.1 28 20-47 48-75 (167)
12 3izc_v 60S acidic ribosomal pr 24.6 48 0.0016 21.4 2.3 26 19-46 4-29 (106)
13 2la0_A Uncharacterized protein 22.7 22 0.00074 19.5 0.3 7 18-24 24-30 (30)
14 2lbf_B 60S acidic ribosomal pr 20.8 38 0.0013 20.5 1.2 34 19-53 5-38 (70)
15 1znp_A Hypothetical protein AT 20.4 5.6 0.00019 27.6 -3.0 12 17-28 39-50 (154)
No 1
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A*
Probab=49.58 E-value=13 Score=31.33 Aligned_cols=53 Identities=26% Similarity=0.525 Sum_probs=39.5
Q ss_pred CchhhHHHHHHH-----HhhHHHHHhhHhh-ccCCCCCCCC------------ch----------------HHHHHhhhh
Q 034916 2 NPQTDKIVRRTT-----MVATAVASYFLLT-ADYGPEPNAL------------DP----------------IKKAILSAE 47 (79)
Q Consensus 2 ~P~tdk~Vrr~t-----mvat~~asYflLT-aDYgp~pn~l------------dP----------------Ikk~ilSa~ 47 (79)
||++.++|+|-. +......++|=|+ -|.||.-.|+ || +|++|+.+-
T Consensus 378 Dp~t~~iv~~fa~d~~~F~~~FA~A~~KL~~rdmgp~~~~~g~~~p~~~~~wqdp~p~~~~~~~~~~~~~~lk~~~~~~g 457 (737)
T 3vli_A 378 DPDYREVMETFQENPMEFGMNFAKAWYKLTHLDMGPPERFLGPEVPDEEMIWQDPLPDADYDLIGDEEIAELKEEILDSD 457 (737)
T ss_dssp SHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCSGGGCBSTTCCSSCCGGGCCCCCCCSBCCCHHHHHHHHHHHHHSS
T ss_pred CccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcccCcccccCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHhCC
Confidence 789999999864 6666777777666 5998864433 33 688898888
Q ss_pred hhhhhhh
Q 034916 48 SSVKEFI 54 (79)
Q Consensus 48 ~sVKefi 54 (79)
.++-|++
T Consensus 458 ~~~~~lv 464 (737)
T 3vli_A 458 LSVSQLV 464 (737)
T ss_dssp CCHHHHH
T ss_pred CCHHHHH
Confidence 8888866
No 2
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A*
Probab=47.55 E-value=16 Score=30.86 Aligned_cols=53 Identities=32% Similarity=0.604 Sum_probs=38.6
Q ss_pred CchhhHHHHHHH-----HhhHHHHHhhHhh-ccCCCCCCCC------------ch----------------HHHHHhhhh
Q 034916 2 NPQTDKIVRRTT-----MVATAVASYFLLT-ADYGPEPNAL------------DP----------------IKKAILSAE 47 (79)
Q Consensus 2 ~P~tdk~Vrr~t-----mvat~~asYflLT-aDYgp~pn~l------------dP----------------Ikk~ilSa~ 47 (79)
||++.++|+|-. +......++|=|+ -|.||.-.|+ || +|++|+.+-
T Consensus 395 Dp~t~~iv~~fa~d~~~F~~~FA~Am~KL~~rdmgp~~~~~g~~~p~~~~~wqdp~p~~~~~~~~~~~~~~lk~~~~~~g 474 (748)
T 3n3r_A 395 DPAYEKISRRFHENPEQFADAFARAWFKLTHRDMGPRARYLGPEVPAEVLLWQDPIPAVDHPLIDAADAAELKAKVLASG 474 (748)
T ss_dssp SHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCSGGGCBSTTCCCSCCGGGCCCCCCCSCCCCHHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHhhCHHHHHHHHHHHHHHHhccCcCcccccCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 788999999864 6666677777666 5888753332 33 688898888
Q ss_pred hhhhhhh
Q 034916 48 SSVKEFI 54 (79)
Q Consensus 48 ~sVKefi 54 (79)
.++-|++
T Consensus 475 l~~~~lv 481 (748)
T 3n3r_A 475 LTVSQLV 481 (748)
T ss_dssp CCHHHHH
T ss_pred CCHHHHH
Confidence 8888865
No 3
>3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A
Probab=45.90 E-value=5.2 Score=29.54 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=12.1
Q ss_pred HhhHhhccCCCCCCCCchHHHHHhhh
Q 034916 21 SYFLLTADYGPEPNALDPIKKAILSA 46 (79)
Q Consensus 21 sYflLTaDYgp~pn~ldPIkk~ilSa 46 (79)
.||-+.+|-.|.|+.+..||+.+..-
T Consensus 16 ~~~~~~~~~~~~~~~~~~Ik~~V~~L 41 (301)
T 3dte_A 16 LYFQGMTDPAPPPTALAAAKARMREL 41 (301)
T ss_dssp ------------CCHHHHHHHHHHHH
T ss_pred eEEeecCCCCCcchHHHHHHHHHHHH
Confidence 59999999999999999999988654
No 4
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15}
Probab=45.23 E-value=22 Score=30.16 Aligned_cols=54 Identities=33% Similarity=0.491 Sum_probs=38.5
Q ss_pred CCchhhHHHHHHH-----HhhHHHHHhhHhh-ccCCCCCCCC------------ch----------------HHHHHhhh
Q 034916 1 MNPQTDKIVRRTT-----MVATAVASYFLLT-ADYGPEPNAL------------DP----------------IKKAILSA 46 (79)
Q Consensus 1 m~P~tdk~Vrr~t-----mvat~~asYflLT-aDYgp~pn~l------------dP----------------Ikk~ilSa 46 (79)
+||++.++|+|-. +......++|=|+ -|.||.-.|+ || +|++|+.+
T Consensus 407 ~Dp~t~~iv~~fa~d~~~F~~~FA~A~~KL~~rdmgp~~~~~g~~vp~~~~~wqdp~p~~~~~~~~~~~~~~lk~~~~~~ 486 (764)
T 3ut2_A 407 NDPEYLKISQRWLEHPEELADAFAKAWFKLLHRDLGPTTRYLGPEVPKESFIWQDPLPAREGDLIDDADVDKLKAAILST 486 (764)
T ss_dssp SSHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCSGGGCBSTTCCSSCCGGGCCCCCCCSBCCCHHHHHHHHHHHHTS
T ss_pred cCchHHHHHHHHhhCHHHHHHHHHHHHHHHhccccccccccCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 4789999999864 5666667777666 6888753333 33 68888888
Q ss_pred -hhhhhhhh
Q 034916 47 -ESSVKEFI 54 (79)
Q Consensus 47 -~~sVKefi 54 (79)
-.++-|++
T Consensus 487 ~gl~~~~lv 495 (764)
T 3ut2_A 487 DGLDVSKLA 495 (764)
T ss_dssp TTCCHHHHH
T ss_pred CCCCHHHHH
Confidence 67777766
No 5
>1yqw_Q Periplasmic [NIFE] hydrogenase large subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 1yrq_H 3h3x_Q 3cus_Q 3cur_H 1frf_L
Probab=40.05 E-value=42 Score=26.27 Aligned_cols=42 Identities=31% Similarity=0.460 Sum_probs=28.2
Q ss_pred chhhHHHHHHHHhhHHHHH-----hhHhhccCCCCCCCC--chHHHHHh
Q 034916 3 PQTDKIVRRTTMVATAVAS-----YFLLTADYGPEPNAL--DPIKKAIL 44 (79)
Q Consensus 3 P~tdk~Vrr~tmvat~~as-----YflLTaDYgp~pn~l--dPIkk~il 44 (79)
|..-+++|+...-+--+.| |+|...|++.-+++| ||-+..++
T Consensus 96 P~~A~~iR~L~~~~e~i~sHllhf~~l~~~D~~~~~~al~adp~~~~~~ 144 (549)
T 1yqw_Q 96 PANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKL 144 (549)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCTGGGGGSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhcCChHHHHHH
Confidence 4556777887766655544 555567998766654 77777777
No 6
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=31.27 E-value=38 Score=22.17 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=18.1
Q ss_pred HHHhhHhhccCCCCCCCCchHHHHHhhh
Q 034916 19 VASYFLLTADYGPEPNALDPIKKAILSA 46 (79)
Q Consensus 19 ~asYflLTaDYgp~pn~ldPIkk~ilSa 46 (79)
+++|+||...-...|+. |=|++.|.++
T Consensus 4 vaAylL~~l~G~~~pta-d~I~~ILkAa 30 (113)
T 3iz5_v 4 IAAYLLAYLSGNASPSA-EDLTSILESV 30 (113)
T ss_dssp HHHHHHHHHHTCCCCTT-TTHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCH-HHHHHHHHHc
Confidence 68899988776666755 3366665554
No 7
>1wui_L Periplasmic [NIFE] hydrogenase large subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.18.1.1 PDB: 1ubj_L 1ubh_L 1ubl_L 1ubm_L 1ubo_L 1ubr_L 1ubt_L 1ubu_L 1wuh_L* 1ubk_L* 1wuj_L 1wuk_L 1wul_L 1h2r_L 1h2a_L
Probab=30.15 E-value=76 Score=24.64 Aligned_cols=42 Identities=29% Similarity=0.417 Sum_probs=27.5
Q ss_pred chhhHHHHHHHHhhHHHHH-----hhHhhccCCCCCCCC--chHHHHHh
Q 034916 3 PQTDKIVRRTTMVATAVAS-----YFLLTADYGPEPNAL--DPIKKAIL 44 (79)
Q Consensus 3 P~tdk~Vrr~tmvat~~as-----YflLTaDYgp~pn~l--dPIkk~il 44 (79)
|..-+++|+...-+--+.| |+|...|++.-+.+| ||-+..++
T Consensus 87 P~~A~~iR~L~~~~~~i~sHllhf~~l~~~D~~~~~~al~adp~~~~~~ 135 (534)
T 1wui_L 87 PKNATYIRNLVLGAQYLHDHIVHFYHLHALDFVDVTAALKADPAKAAKV 135 (534)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCTGGGGGCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhcCChHHHHHH
Confidence 4556677877766654443 666568988765554 78777766
No 8
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=28.45 E-value=57 Score=19.21 Aligned_cols=28 Identities=36% Similarity=0.354 Sum_probs=20.0
Q ss_pred CchhhHHHHHHHH----hhHHHHHhhHhhccC
Q 034916 2 NPQTDKIVRRTTM----VATAVASYFLLTADY 29 (79)
Q Consensus 2 ~P~tdk~Vrr~tm----vat~~asYflLTaDY 29 (79)
.|+.|.++=|+|| ++|+.+.|+|..|-.
T Consensus 24 gg~sd~~Ly~~t~~l~~~g~~~~~y~l~~~~~ 55 (59)
T 1v54_J 24 GGATDNILYRVTMTLCLGGTLYSLYCLGWASF 55 (59)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cCcCceeHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3678888888775 456667788876643
No 9
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=26.96 E-value=27 Score=20.21 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=21.8
Q ss_pred HHHhhHhhccCCCCCCCCchHHHHHhhhhhhhhhh
Q 034916 19 VASYFLLTADYGPEPNALDPIKKAILSAESSVKEF 53 (79)
Q Consensus 19 ~asYflLTaDYgp~pn~ldPIkk~ilSa~~sVKef 53 (79)
+++|+|| +|-|-+|+. |=|++.+.++--.|.+|
T Consensus 4 ~yAallL-~~~g~~~t~-~~I~~il~aaGveve~~ 36 (58)
T 3a1y_A 4 VYAALLL-HSVGKEINE-ENLKAVLQAAGVEPEEA 36 (58)
T ss_dssp HHHHHHH-HHTTCCCCH-HHHHHHHHHTTCCCCHH
T ss_pred HHHHHHH-HhCCCCCCH-HHHHHHHHHcCCCccHH
Confidence 4455555 555666765 55888888887766664
No 10
>1z23_A CRK-associated substrate; four-helix bundle, cell adhesion; NMR {Rattus norvegicus}
Probab=25.75 E-value=1.3e+02 Score=21.02 Aligned_cols=50 Identities=20% Similarity=0.305 Sum_probs=37.9
Q ss_pred hhHHHHHHHHhhHHHHHhhHhhccCCC----------CCCCCchHHHHHhhhhhhhhhhh
Q 034916 5 TDKIVRRTTMVATAVASYFLLTADYGP----------EPNALDPIKKAILSAESSVKEFI 54 (79)
Q Consensus 5 tdk~Vrr~tmvat~~asYflLTaDYgp----------~pn~ldPIkk~ilSa~~sVKefi 54 (79)
.|+++|---.|.+.++.-+.+.+--|- -...++=||.+.+.-+.++.||+
T Consensus 13 ~E~L~rLQ~~v~~sVs~Ll~fv~s~~~~~~WR~~~~~le~~i~~i~~a~~~v~~Sl~efL 72 (163)
T 1z23_A 13 VETLARLQQGVSTTVAHLLDLVGSASGPGGWRSTSEPQEPPVQDLKAAVAAVHGAVHELL 72 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCSSSSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCcCccCcccccchhHHHHHHHHHHHHHHHHHHH
Confidence 477888888899999888888622211 22556779999999999999987
No 11
>1ryl_A Hypothetical protein YFBM; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Escherichia coli} SCOP: d.276.1.1
Probab=25.25 E-value=64 Score=21.47 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=23.6
Q ss_pred HHhhHhhccCCCCCCCCchHHHHHhhhh
Q 034916 20 ASYFLLTADYGPEPNALDPIKKAILSAE 47 (79)
Q Consensus 20 asYflLTaDYgp~pn~ldPIkk~ilSa~ 47 (79)
+..||||..-+.+|+--||+-.+|+..+
T Consensus 48 ~LhflLtG~~~~~~~~~~pls~ai~G~~ 75 (167)
T 1ryl_A 48 FLHFGLTGTSAFDPAKNDPLSRAVLGEH 75 (167)
T ss_dssp HHHHHHHSSCTTSCCTTCHHHHHHHCSE
T ss_pred HHHHHhcCCCcccCCCCCCceEEEECcc
Confidence 5689999987778999999999888754
No 12
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=24.64 E-value=48 Score=21.37 Aligned_cols=26 Identities=38% Similarity=0.585 Sum_probs=15.6
Q ss_pred HHHhhHhhccCCCCCCCCchHHHHHhhh
Q 034916 19 VASYFLLTADYGPEPNALDPIKKAILSA 46 (79)
Q Consensus 19 ~asYflLTaDYgp~pn~ldPIkk~ilSa 46 (79)
+++|+|| .+-|-+|+.-| |++.|.++
T Consensus 4 vaAyLL~-~~gG~e~tad~-I~~ilkAa 29 (106)
T 3izc_v 4 LAAYLLL-NAAGNTPDATK-IKAILESV 29 (106)
T ss_dssp HHHHHHH-HHHTCCCTTTT-HHHHHHHH
T ss_pred HHHHHHH-HhcCCCCCHHH-HHHHHHHc
Confidence 5778776 45566577643 55555554
No 13
>2la0_A Uncharacterized protein; thioether bridges, helical loops, crosslinked, post-translat modified, antimicrobial protein; HET: DTY; NMR {Bacillus cereus 95}
Probab=22.70 E-value=22 Score=19.48 Aligned_cols=7 Identities=86% Similarity=1.231 Sum_probs=5.3
Q ss_pred HHHHhhH
Q 034916 18 AVASYFL 24 (79)
Q Consensus 18 ~~asYfl 24 (79)
+.|||||
T Consensus 24 aaasyfl 30 (30)
T 2la0_A 24 AAASYFL 30 (30)
T ss_dssp HTHHHHC
T ss_pred hhhhhcC
Confidence 5678986
No 14
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=20.76 E-value=38 Score=20.49 Aligned_cols=34 Identities=32% Similarity=0.344 Sum_probs=22.2
Q ss_pred HHHhhHhhccCCCCCCCCchHHHHHhhhhhhhhhh
Q 034916 19 VASYFLLTADYGPEPNALDPIKKAILSAESSVKEF 53 (79)
Q Consensus 19 ~asYflLTaDYgp~pn~ldPIkk~ilSa~~sVKef 53 (79)
+++|+||.-|--.+|++ |=|++.+.++--.|.++
T Consensus 5 vyA~Lll~~~g~~~~ta-~~I~~il~aaGvevd~~ 38 (70)
T 2lbf_B 5 VASYLLAALGGNSSPSA-KDIKKILDSVGIEADDD 38 (70)
T ss_dssp HHHHHHHHHHTCSSCCH-HHHHHHHHTTTCCCCTT
T ss_pred HHHHHHHHhCCCCCCCH-HHHHHHHHHcCCCccHH
Confidence 56777766553337775 55888888876666553
No 15
>1znp_A Hypothetical protein ATU3615; NESG, ATR55, Q8U9W0, structural genomics, PSI, protein struc initiative; 2.50A {Agrobacterium tumefaciens str} SCOP: b.82.1.16
Probab=20.36 E-value=5.6 Score=27.56 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=9.1
Q ss_pred HHHHHhhHhhcc
Q 034916 17 TAVASYFLLTAD 28 (79)
Q Consensus 17 t~~asYflLTaD 28 (79)
+.|+.||||+++
T Consensus 39 ~~TaIYfLL~~g 50 (154)
T 1znp_A 39 HSTAIYYLLEKG 50 (154)
T ss_dssp SCEEEEEEEESS
T ss_pred ceeEEEEEecCC
Confidence 457889999853
Done!