Query 034916
Match_columns 79
No_of_seqs 12 out of 14
Neff 1.8
Searched_HMMs 13730
Date Mon Mar 25 12:26:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034916.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034916hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fiqa1 c.1.10.7 (A:1-420) Put 44.4 3.4 0.00025 31.0 1.0 34 21-54 80-114 (420)
2 d2iuba2 f.17.3.1 (A:286-349) M 41.8 14 0.0011 19.5 3.3 28 4-31 1-28 (64)
3 d1gvfa_ c.1.10.2 (A:) Tagatose 36.5 13 0.00095 25.5 3.1 29 32-60 249-282 (284)
4 d1scha_ a.93.1.1 (A:) Plant pe 24.6 46 0.0033 21.7 4.1 11 36-46 80-90 (294)
5 d2p7tc1 f.14.1.1 (C:86-119) Po 21.2 35 0.0026 17.7 2.4 20 7-27 4-23 (34)
6 d1qxoa_ d.258.1.1 (A:) Chorism 20.8 37 0.0027 24.6 3.2 24 28-53 365-388 (388)
7 d1mvha_ b.85.7.1 (A:) SET doma 20.4 13 0.00095 24.6 0.6 11 25-35 255-265 (269)
8 d1v54j_ f.23.4.1 (J:) Mitochon 20.1 41 0.003 18.9 2.7 24 5-28 27-54 (58)
9 d2ccaa1 a.93.1.3 (A:26-435) Ca 19.0 29 0.0021 25.5 2.3 37 2-38 362-404 (410)
10 d1vq3a_ d.284.1.1 (A:) PurS su 18.2 23 0.0017 20.3 1.3 19 30-48 15-33 (86)
No 1
>d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1 GatZ {Escherichia coli [TaxId: 562]}
Probab=44.37 E-value=3.4 Score=30.99 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=28.1
Q ss_pred HhhHhhccC-CCCCCCCchHHHHHhhhhhhhhhhh
Q 034916 21 SYFLLTADY-GPEPNALDPIKKAILSAESSVKEFI 54 (79)
Q Consensus 21 sYflLTaDY-gp~pn~ldPIkk~ilSa~~sVKefi 54 (79)
..++|..|+ ||.|=--+|-+.+|.+|..+|++|+
T Consensus 80 ~~iiLggDHlGP~~Wq~~~~~~AM~~a~~li~~~v 114 (420)
T d2fiqa1 80 ERIILGGDHLGPNCWQQENVDAAMEKSVELVKAYV 114 (420)
T ss_dssp GGEEEEEEEESSGGGTTSBHHHHHHHHHHHHHHHH
T ss_pred hhEEEecCCCCChhhcCCCHHHHHHHHHHHHHHHH
Confidence 467899998 5644466889999999999999987
No 2
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=41.80 E-value=14 Score=19.53 Aligned_cols=28 Identities=21% Similarity=0.422 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHhhHHHHHhhHhhccCCC
Q 034916 4 QTDKIVRRTTMVATAVASYFLLTADYGP 31 (79)
Q Consensus 4 ~tdk~Vrr~tmvat~~asYflLTaDYgp 31 (79)
|+.+++|+.|+++++.+---++|+=||=
T Consensus 1 r~N~~mk~lT~it~iflP~t~i~gifGM 28 (64)
T d2iuba2 1 KTNEVMKVLTIIATIFMPLTFIAGIYGM 28 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 5678999999999999888888998887
No 3
>d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]}
Probab=36.54 E-value=13 Score=25.48 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=22.2
Q ss_pred CCCCCch---HHHHHhhhhhhhhhhh--ccCCCC
Q 034916 32 EPNALDP---IKKAILSAESSVKEFI--FGSKKE 60 (79)
Q Consensus 32 ~pn~ldP---Ikk~ilSa~~sVKefi--fgskke 60 (79)
.|+..|| +++++.+.+..|+++| |||..+
T Consensus 249 n~~~~d~~~~~~~~~~a~~~~v~~~i~~fGs~gK 282 (284)
T d1gvfa_ 249 NPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANR 282 (284)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3567787 6778888888888887 998754
No 4
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]}
Probab=24.57 E-value=46 Score=21.72 Aligned_cols=11 Identities=36% Similarity=0.486 Sum_probs=8.6
Q ss_pred CchHHHHHhhh
Q 034916 36 LDPIKKAILSA 46 (79)
Q Consensus 36 ldPIkk~ilSa 46 (79)
+|+||.+++.+
T Consensus 80 id~iK~~~e~~ 90 (294)
T d1scha_ 80 IDTIKSQVESL 90 (294)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhhhh
Confidence 59999988753
No 5
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=21.18 E-value=35 Score=17.68 Aligned_cols=20 Identities=40% Similarity=0.391 Sum_probs=12.7
Q ss_pred HHHHHHHHhhHHHHHhhHhhc
Q 034916 7 KIVRRTTMVATAVASYFLLTA 27 (79)
Q Consensus 7 k~Vrr~tmvat~~asYflLTa 27 (79)
|-|....|||.++ ||-|.+|
T Consensus 4 rcvavvvmvagit-s~glv~a 23 (34)
T d2p7tc1 4 RCVAVVVMVAGIT-SFGLVTA 23 (34)
T ss_dssp HHHHHHHHHHHHH-HHHHHHH
T ss_pred eEEEEEEEEeccc-hhhhHHH
Confidence 4566677887765 5666554
No 6
>d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus pneumoniae [TaxId: 1313]}
Probab=20.76 E-value=37 Score=24.57 Aligned_cols=24 Identities=17% Similarity=0.466 Sum_probs=21.3
Q ss_pred cCCCCCCCCchHHHHHhhhhhhhhhh
Q 034916 28 DYGPEPNALDPIKKAILSAESSVKEF 53 (79)
Q Consensus 28 DYgp~pn~ldPIkk~ilSa~~sVKef 53 (79)
=+|. +-++-||+.+.+-...+|+|
T Consensus 365 k~g~--d~l~~~~~~~~~y~~~~~~~ 388 (388)
T d1qxoa_ 365 KFSS--DNLEELKEAVAKHRDYTKNY 388 (388)
T ss_dssp HSCC--SBHHHHHHHHHHHHHHHHTC
T ss_pred HhCC--CcHHHHHHHHHHHHHHHhcC
Confidence 4787 89999999999999999887
No 7
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=20.42 E-value=13 Score=24.62 Aligned_cols=11 Identities=36% Similarity=0.452 Sum_probs=9.0
Q ss_pred hhccCCCCCCC
Q 034916 25 LTADYGPEPNA 35 (79)
Q Consensus 25 LTaDYgp~pn~ 35 (79)
||-|||.++|.
T Consensus 255 Lt~DYG~~~d~ 265 (269)
T d1mvha_ 255 LTFDYAGAKDF 265 (269)
T ss_dssp CEECCCTTSSS
T ss_pred EEEecCCCcCC
Confidence 68899998775
No 8
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.12 E-value=41 Score=18.86 Aligned_cols=24 Identities=38% Similarity=0.342 Sum_probs=16.7
Q ss_pred hhHHHHHHHHhhH----HHHHhhHhhcc
Q 034916 5 TDKIVRRTTMVAT----AVASYFLLTAD 28 (79)
Q Consensus 5 tdk~Vrr~tmvat----~~asYflLTaD 28 (79)
.|++.=|+||+-| +-+.|.|..|-
T Consensus 27 ~D~~LYr~Tm~L~~~G~~~s~~~l~~a~ 54 (58)
T d1v54j_ 27 TDNILYRVTMTLCLGGTLYSLYCLGWAS 54 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999998654 44556666553
No 9
>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=19.02 E-value=29 Score=25.55 Aligned_cols=37 Identities=27% Similarity=0.532 Sum_probs=27.9
Q ss_pred CchhhHHHHHH-----HHhhHHHHHhhHhh-ccCCCCCCCCch
Q 034916 2 NPQTDKIVRRT-----TMVATAVASYFLLT-ADYGPEPNALDP 38 (79)
Q Consensus 2 ~P~tdk~Vrr~-----tmvat~~asYflLT-aDYgp~pn~ldP 38 (79)
||.-.+|++|- .++...+.+||=|| .|.||.-.|+-|
T Consensus 362 Dp~~r~iae~ya~d~d~F~~dFa~AW~KL~hrDmgp~~r~~g~ 404 (410)
T d2ccaa1 362 DPIYERITRRWLEHPEELADEFAKAWYKLIHRDMGPVARYLGP 404 (410)
T ss_dssp SHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCSGGGCBST
T ss_pred CHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcccCCchhhccCC
Confidence 67777777775 47778888888555 799998777755
No 10
>d1vq3a_ d.284.1.1 (A:) PurS subunit of FGAM synthetase {Thermotoga maritima [TaxId: 2336]}
Probab=18.22 E-value=23 Score=20.33 Aligned_cols=19 Identities=21% Similarity=0.127 Sum_probs=15.5
Q ss_pred CCCCCCCchHHHHHhhhhh
Q 034916 30 GPEPNALDPIKKAILSAES 48 (79)
Q Consensus 30 gp~pn~ldPIkk~ilSa~~ 48 (79)
+++|..+||--++|..|-.
T Consensus 15 ~~K~gVlDPqG~av~~aL~ 33 (86)
T d1vq3a_ 15 QYRSNVRDPRGETIERVLR 33 (86)
T ss_dssp EECTTSCCHHHHHHHHHHH
T ss_pred EECCCCcCcHHHHHHHHHH
Confidence 6799999998888877643
Done!