Query 034922
Match_columns 78
No_of_seqs 111 out of 721
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:42:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034922.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034922hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3489 Mitochondrial import i 100.0 7.8E-28 1.7E-32 145.9 9.3 72 5-77 8-79 (86)
2 PF02953 zf-Tim10_DDP: Tim10/D 99.9 1.1E-26 2.4E-31 134.9 8.3 65 13-77 2-66 (66)
3 KOG1733 Mitochondrial import i 99.9 2.9E-23 6.2E-28 127.7 9.6 69 6-75 17-85 (97)
4 KOG3480 Mitochondrial import i 99.9 6E-21 1.3E-25 116.4 8.6 62 16-77 16-78 (90)
5 KOG3479 Mitochondrial import i 99.8 4.5E-21 9.7E-26 115.9 7.0 61 18-78 5-65 (83)
6 KOG3377 Uncharacterized conser 94.8 0.2 4.3E-06 33.3 6.5 59 18-76 75-137 (143)
7 PF05811 DUF842: Eukaryotic pr 94.5 0.27 5.7E-06 31.9 6.6 59 18-76 67-129 (131)
8 PF05892 Tricho_coat: Trichovi 83.4 5 0.00011 28.0 5.7 61 9-70 111-178 (194)
9 KOG3377 Uncharacterized conser 75.0 22 0.00047 23.7 6.6 25 52-76 56-80 (143)
10 PF05497 Destabilase: Destabil 43.1 28 0.0006 22.4 2.5 15 52-66 62-76 (119)
11 smart00856 PMEI Plant invertas 42.0 75 0.0016 19.6 4.4 29 48-76 65-93 (148)
12 PF09889 DUF2116: Uncharacteri 40.0 52 0.0011 18.6 3.1 27 45-71 10-36 (59)
13 TIGR01614 PME_inhib pectineste 34.7 83 0.0018 20.2 3.9 28 49-76 91-118 (178)
14 KOG0869 CCAAT-binding factor, 32.0 64 0.0014 22.0 3.0 24 43-66 47-70 (168)
15 smart00777 Mad3_BUB1_I Mad3/BU 30.4 66 0.0014 20.6 2.8 25 42-66 35-59 (125)
16 PF04043 PMEI: Plant invertase 29.4 1.4E+02 0.003 18.3 4.2 30 47-76 66-95 (152)
17 PF05811 DUF842: Eukaryotic pr 24.2 2E+02 0.0044 18.3 7.0 41 34-76 32-72 (131)
18 KOG3196 NADH:ubiquinone oxidor 23.9 54 0.0012 23.3 1.6 32 30-61 131-166 (233)
19 PF03617 IBV_3A: IBV 3A protei 22.3 70 0.0015 17.9 1.5 14 28-41 16-29 (57)
20 PLN02416 probable pectinestera 22.1 1.8E+02 0.004 23.1 4.4 32 46-77 99-130 (541)
21 PLN02484 probable pectinestera 21.3 1.8E+02 0.004 23.4 4.3 32 46-77 132-163 (587)
22 KOG1733 Mitochondrial import i 20.8 2.3E+02 0.0049 17.7 8.1 70 7-77 22-91 (97)
23 PF06644 ATP11: ATP11 protein; 20.7 2.1E+02 0.0047 20.7 4.2 20 45-64 212-231 (266)
No 1
>KOG3489 consensus Mitochondrial import inner membrane translocase, subunit TIM8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.8e-28 Score=145.92 Aligned_cols=72 Identities=47% Similarity=0.943 Sum_probs=69.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 034922 5 ALNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSM 77 (78)
Q Consensus 5 ~~~~~e~~~~l~~e~~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e~ 77 (78)
+++++|+++||+.|++++.+++++|.+|+.||+|||. .|+++||+.|++|+.|||+||||++.+|.+||+.+
T Consensus 8 ~~~~~el~~fl~~E~qk~k~~~~VHqft~~CWdKCi~-~~~sklds~~e~ClsnCV~RfiDts~~I~~r~~~~ 79 (86)
T KOG3489|consen 8 DANDPELQQFLEAETQKQKFQEQVHQFTEICWDKCIE-KPGSKLDSSEETCLSNCVNRFIDTSLFIVKRLAQM 79 (86)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999996 77899999999999999999999999999999875
No 2
>PF02953 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterPro: IPR004217 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc binding domain with four conserved cysteine residues. Members of this family include subunits 8, 9, 10 and 13 of the mitochondrial inner membrane translocase complex, which are involved in mitochondrial protein import [, ]. Defects in TIM8 are the cause of 2 human syndromes: Mohr-Tranebjaerg syndrome (MTS) [MIM:304700]; also known as dystonia-deafness syndrome (DDS) or X-linked progressive deafness type 1 (DFN-1). It is a recessive neurodegenerative syndrome characterised by postlingual progressive sensorineural deafness as the first presenting symptom in early childhood, followed by progressive dystonia, spasticity, dysphagia, mental deterioration, paranoia and cortical blindness. Jensen syndrome [MIM:311150]; also known as opticoacoustic nerve atrophy with dementia. This X-linked disease is characterised by deafness, blindness and muscle weakness. The small alpha helical proteins Tim8 and Tim13 assemble into a hexameric complex which can bind Tim23 as its substrate and chaperone the hydrophobic Tim23 across the aqueous membrane space []. More information on zinc fingers can be found at Protein of the Month: Zinc Fingers [].; GO: 0006626 protein targeting to mitochondrion, 0045039 protein import into mitochondrial inner membrane, 0042719 mitochondrial intermembrane space protein transporter complex; PDB: 2BSK_B 3CJH_A 3DXR_A.
Probab=99.94 E-value=1.1e-26 Score=134.92 Aligned_cols=65 Identities=43% Similarity=0.798 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 034922 13 QFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSM 77 (78)
Q Consensus 13 ~~l~~e~~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e~ 77 (78)
++++++++++.++++++++++.||+|||+++|+++|+++|.+||+||++||++++.+|+++|+++
T Consensus 2 ~~~~~~~q~~~~~~~~~~~t~~Cf~kCv~~~~~~~L~~~E~~Ci~~C~~ky~~~~~~v~~~~~~~ 66 (66)
T PF02953_consen 2 QQLMQEQQMKDFQELFNKLTERCFDKCVTKFPSSSLSSKEESCIDNCVDKYIDTNQFVSKRFQQM 66 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHS-TTSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 57889999999999999999999999999889999999999999999999999999999999875
No 3
>KOG1733 consensus Mitochondrial import inner membrane translocase, subunit TIM13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.9e-23 Score=127.72 Aligned_cols=69 Identities=33% Similarity=0.695 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHh
Q 034922 6 LNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQ 75 (78)
Q Consensus 6 ~~~~e~~~~l~~e~~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~ 75 (78)
....++..++.++.+.++.++++++|+++||+|||+ .|+++|++.|.+||++|++|||++|+.|++.+.
T Consensus 17 ~~~~~~m~qVkqqlAvAnAqeLv~kisekCf~KCit-~PGssl~~~e~~Cis~CmdRyMdawniVSrty~ 85 (97)
T KOG1733|consen 17 TTEGELMNQVKQQLAVANAQELVSKISEKCFDKCIT-KPGSSLDSSEKSCISRCMDRYMDAWNIVSRTYI 85 (97)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444489999999999999999999999999999997 999999999999999999999999999987654
No 4
>KOG3480 consensus Mitochondrial import inner membrane translocase, subunits TIM10/TIM12 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=6e-21 Score=116.36 Aligned_cols=62 Identities=34% Similarity=0.680 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 034922 16 NQEKEKAMLNEMVAKLTNVCWDKCIT-STPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSM 77 (78)
Q Consensus 16 ~~e~~~~~~~~~~~~lt~~Cf~kCv~-~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e~ 77 (78)
+++++.+.+.++||+|+..|++|||+ .|..+.|+++|..||||||.||++++..|+++++.+
T Consensus 16 ~Ae~E~emm~d~fNrl~~tC~~KCI~~~y~EaeLtKGE~~CiDRCVaKy~~~n~~vG~~lq~~ 78 (90)
T KOG3480|consen 16 MAELEVEMMSDMFNRLTNTCHKKCIPPRYKEAELTKGESVCIDRCVAKYLDVNEKVGKKLQAM 78 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccCchhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999999 689999999999999999999999999999999875
No 5
>KOG3479 consensus Mitochondrial import inner membrane translocase, subunit TIM9 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.5e-21 Score=115.94 Aligned_cols=61 Identities=28% Similarity=0.614 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 034922 18 EKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSMQ 78 (78)
Q Consensus 18 e~~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e~~ 78 (78)
..++..|-.+||++|+.||..||++|+.++|++.|+.|+.+|++||+..+++|++||+|++
T Consensus 5 ~k~lkDFl~~YN~ltE~CF~dCV~dft~r~l~~~Ee~C~~~C~~Kflk~nqRv~qrf~e~~ 65 (83)
T KOG3479|consen 5 IKQLKDFLTLYNKLTELCFSDCVDDFTTRDLSGKEETCVMRCAEKFLKMNQRVSQRFQELQ 65 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566668999999999999999999999999999999999999999999999999864
No 6
>KOG3377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.78 E-value=0.2 Score=33.34 Aligned_cols=59 Identities=19% Similarity=0.331 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCC----CCChhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 034922 18 EKEKAMLNEMVAKLTNVCWDKCITSTPGS----KFSSSESACLANCAQRYLDMSVIIMKRFQS 76 (78)
Q Consensus 18 e~~~~~~~~~~~~lt~~Cf~kCv~~~~~~----~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e 76 (78)
+.++..|++-+++-+-.|-+|=-...+.+ +.-....+|+.+||++++.+---+.+++.+
T Consensus 75 ~~El~~FQ~RL~Rc~m~C~Dk~~~~~~~~~~~~~~~~~~e~Cvn~cvd~~v~liP~m~k~MK~ 137 (143)
T KOG3377|consen 75 QSELGKFQDRLNRCLMVCNDKFEASKLQGSKRLKAVQQFESCVNKCVDDHVGLIPTMVKRMKE 137 (143)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45677788888888888887754333333 355567789999999999998888888754
No 7
>PF05811 DUF842: Eukaryotic protein of unknown function (DUF842); InterPro: IPR008560 This family consists of a number of conserved eukaryotic proteins of unknown function. The sequences carry three sets of CxxxC motifs, which might suggest a type of zinc-finger formation.
Probab=94.47 E-value=0.27 Score=31.88 Aligned_cols=59 Identities=14% Similarity=0.300 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCC-CC---CCChhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 034922 18 EKEKAMLNEMVAKLTNVCWDKCITSTP-GS---KFSSSESACLANCAQRYLDMSVIIMKRFQS 76 (78)
Q Consensus 18 e~~~~~~~~~~~~lt~~Cf~kCv~~~~-~~---~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e 76 (78)
+.++..|++-+++-+-.|.++=-..++ ++ .....=..|+..||++|+..--.|.+||.+
T Consensus 67 q~El~~FQ~rlqrC~~~C~dk~~d~~~~~~~~~~~~~~~e~C~~~Cvd~hi~llP~l~~r~k~ 129 (131)
T PF05811_consen 67 QNELEQFQNRLQRCVMHCQDKAKDKMDPNPNESDAEKQLESCVNKCVDDHIKLLPSLTKRMKK 129 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 456777888888888888888654322 11 112233589999999999999999998864
No 8
>PF05892 Tricho_coat: Trichovirus coat protein; InterPro: IPR008879 This family consists of several coat proteins which are specific to the ssRNA positive-strand, no DNA stage viruses such as the Trichoviruses and Vitiviruses.; GO: 0019028 viral capsid
Probab=83.45 E-value=5 Score=27.98 Aligned_cols=61 Identities=13% Similarity=0.126 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------CCCCCCCChhHhHHHHHHHHHHHHHHHHH
Q 034922 9 AQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCIT-------STPGSKFSSSESACLANCAQRYLDMSVII 70 (78)
Q Consensus 9 ~e~~~~l~~e~~~~~~~~~~~~lt~~Cf~kCv~-------~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v 70 (78)
++...+|......-.+..+|.+++..|++ +.. +-+-..|++.|.++|.++-.|.+.+-..-
T Consensus 111 ~eA~~~L~~l~~~g~~TnL~~Kmp~~g~k-~PqV~FDFn~GL~l~~L~~~e~~vIq~ln~RLfrtE~aK 178 (194)
T PF05892_consen 111 PEAYNFLVKLASMGVYTNLYKKMPKLGGK-EPQVMFDFNSGLDLSRLTKEEAKVIQNLNQRLFRTEGAK 178 (194)
T ss_pred HHHHHHHHHHHhcchHhHHHHhhHhhcCC-CCeEeeecccCcchhhcCHHHHHHHHHHHHHHHHHHHhh
Confidence 45566777777777888899999999984 322 34567899999999999999999886543
No 9
>KOG3377 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.00 E-value=22 Score=23.71 Aligned_cols=25 Identities=8% Similarity=0.304 Sum_probs=19.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhh
Q 034922 52 ESACLANCAQRYLDMSVIIMKRFQS 76 (78)
Q Consensus 52 E~~Ci~~Cv~ky~~~~~~v~~~~~e 76 (78)
-..||..|+....++..+|..-|.+
T Consensus 56 v~~ci~~c~~pl~~aQ~~~~~El~~ 80 (143)
T KOG3377|consen 56 VNCCIECCVPPLTKAQQYVQSELGK 80 (143)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4689999999888887777665543
No 10
>PF05497 Destabilase: Destabilase; InterPro: IPR008597 Destabilase (3.5.1.44 from EC) is an endo-epsilon(gamma-Glu)-Lys isopeptidase, which cleaves isopeptide bonds formed by transglutaminase (Factor XIIIa) between glutamine gamma-carboxamide and the epsilon-amino group of lysine [].; GO: 0003796 lysozyme activity; PDB: 2DQA_B 3AB6_A 3AYQ_A.
Probab=43.12 E-value=28 Score=22.36 Aligned_cols=15 Identities=20% Similarity=0.505 Sum_probs=12.6
Q ss_pred HhHHHHHHHHHHHHH
Q 034922 52 ESACLANCAQRYLDM 66 (78)
Q Consensus 52 E~~Ci~~Cv~ky~~~ 66 (78)
+-.|..++|..||.-
T Consensus 62 d~~Ca~~tV~~Ym~r 76 (119)
T PF05497_consen 62 DPYCAERTVQNYMAR 76 (119)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 668999999999863
No 11
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor. This domain inhibits pectin methylesterases (PMEs) and invertases through formation of a non-covalent 1:1 complex PUBMED:8521860. It has been implicated in the regulation of fruit development, carbohydrate metabolism and cell wall extension. It may also be involved in inhibiting microbial pathogen PMEs. It has been observed that it is often expressed as a large inactive preprotein PUBMED:8521860. It is also found at the N-termini of PMEs predicted from DNA sequences, suggesting that both PMEs and their inhibitors are expressed as a single polyprotein and subsequently processed. It has two disulphide bridges and is mainly alpha-helical PUBMED:10880981.
Probab=41.97 E-value=75 Score=19.58 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=24.1
Q ss_pred CChhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 034922 48 FSSSESACLANCAQRYLDMSVIIMKRFQS 76 (78)
Q Consensus 48 L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e 76 (78)
.+..+..++..|.+-|-++...+...+..
T Consensus 65 ~~~~~~~al~~C~~~y~~a~~~L~~a~~~ 93 (148)
T smart00856 65 KDPRLKAALKDCLELYDDAVDSLEKALEE 93 (148)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999998887766543
No 12
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=40.04 E-value=52 Score=18.59 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=22.9
Q ss_pred CCCCChhHhHHHHHHHHHHHHHHHHHH
Q 034922 45 GSKFSSSESACLANCAQRYLDMSVIIM 71 (78)
Q Consensus 45 ~~~L~~~E~~Ci~~Cv~ky~~~~~~v~ 71 (78)
|..+..++.-|-+.|-+.|..-..+..
T Consensus 10 G~~Ip~~~~fCS~~C~~~~~k~qk~~~ 36 (59)
T PF09889_consen 10 GKPIPPDESFCSPKCREEYRKRQKRMR 36 (59)
T ss_pred CCcCCcchhhhCHHHHHHHHHHHHHHH
Confidence 566677899999999999999877765
No 13
>TIGR01614 PME_inhib pectinesterase inhibitor domain. This model describes a plant domain of about 200 amino acids, characterized by four conserved Cys residues, shown in a pectinesterase inhibitor from Kiwi to form two disulfide bonds: first to second and third to fourth. Roughly half the members of this family have the region described by this model followed immediately by a pectinesterase domain, pfam01095. This suggests that the pairing of the enzymatic domain and its inhibitor reflects a conserved regulatory mechanism for this enzyme family.
Probab=34.69 E-value=83 Score=20.21 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=23.2
Q ss_pred ChhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 034922 49 SSSESACLANCAQRYLDMSVIIMKRFQS 76 (78)
Q Consensus 49 ~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e 76 (78)
+..+..++..|.+-|-++...+...+..
T Consensus 91 ~~~~~~al~~C~~~y~~a~~~L~~a~~~ 118 (178)
T TIGR01614 91 DPRDKSALEDCVELYSDAVDALDKALAS 118 (178)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999998887765543
No 14
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=32.01 E-value=64 Score=22.02 Aligned_cols=24 Identities=13% Similarity=0.462 Sum_probs=21.2
Q ss_pred CCCCCCChhHhHHHHHHHHHHHHH
Q 034922 43 TPGSKFSSSESACLANCAQRYLDM 66 (78)
Q Consensus 43 ~~~~~L~~~E~~Ci~~Cv~ky~~~ 66 (78)
.+..++++.-..|+.-||.-||-+
T Consensus 47 P~naKIsKDAKE~vQECVSEfISF 70 (168)
T KOG0869|consen 47 PANAKISKDAKETVQECVSEFISF 70 (168)
T ss_pred CcccccchHHHHHHHHHHHHHHHH
Confidence 368889999999999999999964
No 15
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=30.38 E-value=66 Score=20.61 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=19.1
Q ss_pred CCCCCCCChhHhHHHHHHHHHHHHH
Q 034922 42 STPGSKFSSSESACLANCAQRYLDM 66 (78)
Q Consensus 42 ~~~~~~L~~~E~~Ci~~Cv~ky~~~ 66 (78)
++|++.-.++=..-+.+|+.+|.+.
T Consensus 35 ~~p~g~~~s~L~~lLerc~~~f~~~ 59 (125)
T smart00777 35 NYPQGGKESGLLTLLERCIRYFEDD 59 (125)
T ss_pred hCCCCCchhhHHHHHHHHHHHhhhh
Confidence 5777655566678999999988764
No 16
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues. This domain inhibits pectinesterase/pectin methylesterases (PMEs) and invertases through formation of a non-covalent 1:1 complex []. It has been implicated in the regulation of fruit development, carbohydrate metabolism and cell wall extension. It may also be involved in inhibiting microbial pathogen PMEs. It has been observed that it is often expressed as a large inactive preprotein []. This domain is also found at the N-termini of PMEs predicted from DNA sequences, suggesting that both PMEs and their inhibitors are expressed as a single polyprotein and subsequently processed. It has two disulphide bridges and is mainly alpha-helical in structure [].; GO: 0004857 enzyme inhibitor activity, 0030599 pectinesterase activity; PDB: 1X90_A 1X8Z_C 1X91_A 1XG2_B 1RJ4_D 2CJ4_B 2XQR_F 2CJ7_A 2CJ8_A 2CJ6_A ....
Probab=29.44 E-value=1.4e+02 Score=18.26 Aligned_cols=30 Identities=13% Similarity=0.297 Sum_probs=24.5
Q ss_pred CCChhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 034922 47 KFSSSESACLANCAQRYLDMSVIIMKRFQS 76 (78)
Q Consensus 47 ~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e 76 (78)
..+.....|+..|.+-|-++...+...+..
T Consensus 66 ~~~~~~~~~l~~C~~~y~~a~~~l~~a~~~ 95 (152)
T PF04043_consen 66 SKDPNAKQALQDCQELYDDAVDSLQRALEA 95 (152)
T ss_dssp S-THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888999999999999998888766554
No 17
>PF05811 DUF842: Eukaryotic protein of unknown function (DUF842); InterPro: IPR008560 This family consists of a number of conserved eukaryotic proteins of unknown function. The sequences carry three sets of CxxxC motifs, which might suggest a type of zinc-finger formation.
Probab=24.16 E-value=2e+02 Score=18.34 Aligned_cols=41 Identities=15% Similarity=0.420 Sum_probs=26.0
Q ss_pred HHHHhhhcCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 034922 34 VCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQS 76 (78)
Q Consensus 34 ~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e 76 (78)
.|=.+|..+ ++++. ..=..||.+|..--..+...|..-|+.
T Consensus 32 ~C~a~Ccdd-~~~s~-e~V~~Cve~C~~pl~~aq~~vq~El~~ 72 (131)
T PF05811_consen 32 KCAAKCCDD-SSASM-EQVQRCVERCQQPLQQAQNYVQNELEQ 72 (131)
T ss_pred HHHHHHhhC-CCCCH-HHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 455566632 23222 234589999998888887777765554
No 18
>KOG3196 consensus NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit [Energy production and conversion]
Probab=23.92 E-value=54 Score=23.32 Aligned_cols=32 Identities=22% Similarity=0.474 Sum_probs=26.9
Q ss_pred HHHHHHHHhhhc----CCCCCCCChhHhHHHHHHHH
Q 034922 30 KLTNVCWDKCIT----STPGSKFSSSESACLANCAQ 61 (78)
Q Consensus 30 ~lt~~Cf~kCv~----~~~~~~L~~~E~~Ci~~Cv~ 61 (78)
.+.+.|=++|-. ..+...++-.|..|+-+||.
T Consensus 131 ~i~ea~~k~lgi~~Gett~d~~Ftl~e~eClGaCvn 166 (233)
T KOG3196|consen 131 DILEACKKQLGIKVGETTKDGLFTLEEVECLGACVN 166 (233)
T ss_pred HHHHHHHHHhCccccccccccceeeecchhhhhhcc
Confidence 688889999976 35778889999999999984
No 19
>PF03617 IBV_3A: IBV 3A protein ; InterPro: IPR005214 The gene product of gene 3 from Infectious bronchitis virus (strain CL190). Currently, the function of this protein remains unknown.
Probab=22.29 E-value=70 Score=17.89 Aligned_cols=14 Identities=29% Similarity=0.740 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhhhc
Q 034922 28 VAKLTNVCWDKCIT 41 (78)
Q Consensus 28 ~~~lt~~Cf~kCv~ 41 (78)
--++.=.||..||-
T Consensus 16 wcklvlscf~ecvi 29 (57)
T PF03617_consen 16 WCKLVLSCFRECVI 29 (57)
T ss_pred HHHHHHHHHHHHHH
Confidence 35777788888874
No 20
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=22.12 E-value=1.8e+02 Score=23.14 Aligned_cols=32 Identities=6% Similarity=0.147 Sum_probs=27.2
Q ss_pred CCCChhHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 034922 46 SKFSSSESACLANCAQRYLDMSVIIMKRFQSM 77 (78)
Q Consensus 46 ~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e~ 77 (78)
..++..+..++..|++.|-++-..+...+.++
T Consensus 99 ~~~~~~~k~AL~DC~El~~dAvD~L~~Sl~~L 130 (541)
T PLN02416 99 SNIIEKQRGTIQDCKELHQITVSSLKRSVSRI 130 (541)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999988888777664
No 21
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=21.32 E-value=1.8e+02 Score=23.38 Aligned_cols=32 Identities=9% Similarity=0.176 Sum_probs=27.2
Q ss_pred CCCChhHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 034922 46 SKFSSSESACLANCAQRYLDMSVIIMKRFQSM 77 (78)
Q Consensus 46 ~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e~ 77 (78)
..++..+..+++.|.+-|-++-..+...+.++
T Consensus 132 ~~~~~r~k~AL~DClELlddAid~L~~Sl~~l 163 (587)
T PLN02484 132 VQMPPRVRSAYDSCLELLDDSVDALSRALSSV 163 (587)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999988888776553
No 22
>KOG1733 consensus Mitochondrial import inner membrane translocase, subunit TIM13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.82 E-value=2.3e+02 Score=17.68 Aligned_cols=70 Identities=20% Similarity=0.201 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 034922 7 NSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSM 77 (78)
Q Consensus 7 ~~~e~~~~l~~e~~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e~ 77 (78)
--..+.+++..-.+.+.+..+-.+..++|-.+=-.++.++ =.+-=.-|++|=++-|=-++..+..|+|.-
T Consensus 22 ~m~qVkqqlAvAnAqeLv~kisekCf~KCit~PGssl~~~-e~~Cis~CmdRyMdawniVSrty~sRlQre 91 (97)
T KOG1733|consen 22 LMNQVKQQLAVANAQELVSKISEKCFDKCITKPGSSLDSS-EKSCISRCMDRYMDAWNIVSRTYISRLQRE 91 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888899999999999998865544333 367778999999999999999999999863
No 23
>PF06644 ATP11: ATP11 protein; InterPro: IPR010591 This family consists of several eukaryotic ATP11 proteins. The expression of functional F1-ATPase requires two proteins which are encoded by the ATP11 and ATP12 genes []. Atp11p is a molecular chaperone of the mitochondrial matrix that participates in the biogenesis pathway to form F1, which is the catalytic unit of ATP synthase. It binds to the free beta subunits of F1, which prevents the beta subunit from associating with itself in non-productive complex. It also allows for the formation of a (alpha beta)3 hexamer []. ; GO: 0006461 protein complex assembly, 0005739 mitochondrion; PDB: 2P4F_A.
Probab=20.70 E-value=2.1e+02 Score=20.68 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=16.1
Q ss_pred CCCCChhHhHHHHHHHHHHH
Q 034922 45 GSKFSSSESACLANCAQRYL 64 (78)
Q Consensus 45 ~~~L~~~E~~Ci~~Cv~ky~ 64 (78)
...|+..|..|+-+|+.+|.
T Consensus 212 ~~~ls~~eAq~L~~~lQ~FY 231 (266)
T PF06644_consen 212 DSGLSKQEAQLLVNQLQRFY 231 (266)
T ss_dssp TSS--HHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 44499999999999999999
Done!