Query 034922
Match_columns 78
No_of_seqs 111 out of 721
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 12:32:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034922.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034922hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cjh_B Mitochondrial import in 100.0 1.2E-28 4.2E-33 142.4 7.1 64 15-78 1-64 (64)
2 3dxr_A Mitochondrial import in 100.0 2.3E-28 7.7E-33 149.4 8.5 74 4-78 7-80 (89)
3 2bsk_B Mitochondrial import in 99.9 3.5E-28 1.2E-32 148.7 4.6 70 8-77 2-72 (90)
4 2bsk_A Mitochondrial import in 99.9 3.1E-27 1.1E-31 144.4 6.2 70 1-77 1-70 (89)
5 3dxr_B Mitochondrial import in 99.9 1.7E-26 5.7E-31 142.7 8.4 67 12-78 19-86 (95)
6 3cjh_A Mitochondrial import in 99.9 1.7E-23 6E-28 120.9 5.8 54 20-77 1-54 (64)
7 1ter_A Tertiapin; toxin; NMR { 58.7 3.5 0.00012 18.8 0.8 9 33-41 12-20 (26)
8 2dqa_A Lysozyme; enzyme, subst 47.5 14 0.00046 23.1 2.5 17 52-68 63-79 (124)
9 1x91_A Invertase/pectin methyl 43.3 38 0.0013 20.2 4.2 28 49-76 65-92 (153)
10 1xg2_B Pectinesterase inhibito 42.5 40 0.0014 20.0 4.2 28 49-76 65-92 (153)
11 2plx_B Peptide inhibitor; heli 27.8 23 0.00077 16.0 0.9 7 53-59 18-24 (26)
12 3ayq_A Lysozyme; inhibitor, hy 32.3 14 0.00048 23.0 0.0 17 52-68 61-77 (122)
13 2cj4_A Invertase inhibitor; pr 24.3 92 0.0031 18.4 3.6 28 49-76 66-94 (150)
No 1
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.2e-28 Score=142.39 Aligned_cols=64 Identities=34% Similarity=0.711 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 034922 15 LNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSMQ 78 (78)
Q Consensus 15 l~~e~~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e~~ 78 (78)
|++|+++++++++||+|++.||+|||++||+++|+++|++||+|||+|||+++.+|++||++++
T Consensus 1 i~~E~~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~~~ 64 (64)
T 3cjh_B 1 LEGENSKQKVQMSIHQFTNICFKKCVESVNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGLQNTR 64 (64)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcCChhHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4678999999999999999999999998899999999999999999999999999999999863
No 2
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.3e-28 Score=149.37 Aligned_cols=74 Identities=20% Similarity=0.518 Sum_probs=61.5
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 034922 4 SALNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSMQ 78 (78)
Q Consensus 4 ~~~~~~e~~~~l~~e~~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e~~ 78 (78)
++.++++++++++ +.+++.+.++||+|++.||+|||++||+++|+++|++||+|||+|||+++.+|++||++++
T Consensus 7 ~~~~~~el~~~~~-e~q~k~~~~l~~~lte~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~ 80 (89)
T 3dxr_A 7 NSKEQQEFQKVVE-QKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSEKFLKHSERVGQRFQEQN 80 (89)
T ss_dssp -------CCHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788988886 5566677779999999999999998899999999999999999999999999999999864
No 3
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=99.94 E-value=3.5e-28 Score=148.65 Aligned_cols=70 Identities=29% Similarity=0.562 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 034922 8 SAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCIT-STPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSM 77 (78)
Q Consensus 8 ~~e~~~~l~~e~~~~~~~~~~~~lt~~Cf~kCv~-~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e~ 77 (78)
++++++++.++++++.++++||+|++.||+|||+ +||+++|+++|++||+|||+|||+++.+|++||+++
T Consensus 2 ~~e~~~~~~~e~q~~~~~~l~n~lte~Cf~KCv~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~ 72 (90)
T 2bsk_B 2 DPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTEL 72 (90)
T ss_dssp -----------CTTTTTHHHHHHHHHHHHHHHCCTTCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCcCcCChhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999995 689999999999999999999999999999999875
No 4
>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=99.94 E-value=3.1e-27 Score=144.36 Aligned_cols=70 Identities=29% Similarity=0.483 Sum_probs=54.4
Q ss_pred CCchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 034922 1 MDNSALNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSM 77 (78)
Q Consensus 1 m~~~~~~~~e~~~~l~~e~~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e~ 77 (78)
||++..+++++++ .+.++++||+|++.||+|||++||+++|+++|++||+|||+|||+++.+|++||+++
T Consensus 1 m~~~~~~~~q~~q-------~~~~~~l~n~lte~Cf~KCv~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~ 70 (89)
T 2bsk_A 1 MAAQIPESDQIKQ-------FKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEY 70 (89)
T ss_dssp ------------C-------CHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhcCHHHHHH-------HHHHHHHHHHHHHHHHHHHcccCCCCcCCchHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666665554 445899999999999999998889999999999999999999999999999999875
No 5
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.7e-26 Score=142.73 Aligned_cols=67 Identities=31% Similarity=0.640 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 034922 12 QQFLNQEKEKAMLNEMVAKLTNVCWDKCIT-STPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSMQ 78 (78)
Q Consensus 12 ~~~l~~e~~~~~~~~~~~~lt~~Cf~kCv~-~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e~~ 78 (78)
+.++++|++++.++++||+||+.||+|||+ +||+++|+++|++||+|||+|||+++.+|++||+++.
T Consensus 19 qk~~~aE~q~~~~~~l~nklte~Cf~KCV~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~~ 86 (95)
T 3dxr_B 19 QKIQAAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVGENMQKMG 86 (95)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999998 6799999999999999999999999999999999863
No 6
>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.7e-23 Score=120.95 Aligned_cols=54 Identities=30% Similarity=0.707 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 034922 20 EKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSM 77 (78)
Q Consensus 20 ~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e~ 77 (78)
++++++++|++|++.||+|||+ .| |+++|++||++||+|||+++++|++||+++
T Consensus 1 ~~a~~~~l~~~lt~~Cf~kCv~-~~---L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~ 54 (64)
T 3cjh_A 1 AVANATELVNKISENCFEKCLT-SP---YATRNDACIDQCLAKYMRSWNVISKAYISR 54 (64)
T ss_dssp ----CHHHHHHHHHHHHHHHCC-TT---CCSCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHHHCC-Cc---CChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999997 45 999999999999999999999999999875
No 7
>1ter_A Tertiapin; toxin; NMR {Apis mellifera} SCOP: j.20.1.1
Probab=58.68 E-value=3.5 Score=18.79 Aligned_cols=9 Identities=44% Similarity=1.453 Sum_probs=7.3
Q ss_pred HHHHHhhhc
Q 034922 33 NVCWDKCIT 41 (78)
Q Consensus 33 ~~Cf~kCv~ 41 (78)
..||+||-.
T Consensus 12 hmcwkkcgk 20 (26)
T 1ter_A 12 HMCWKKCGK 20 (26)
T ss_dssp HHHHHHHHC
T ss_pred hHHHHHhCc
Confidence 479999975
No 8
>2dqa_A Lysozyme; enzyme, substrate complex, hydrolase; HET: NAG BGC; 1.60A {Tapes japonica}
Probab=47.53 E-value=14 Score=23.12 Aligned_cols=17 Identities=24% Similarity=0.692 Sum_probs=13.6
Q ss_pred HhHHHHHHHHHHHHHHH
Q 034922 52 ESACLANCAQRYLDMSV 68 (78)
Q Consensus 52 E~~Ci~~Cv~ky~~~~~ 68 (78)
+-.|..+||..||.-+.
T Consensus 63 d~~Ca~~tV~~Ym~ry~ 79 (124)
T 2dqa_A 63 DINCSSKCVQQYMKRYA 79 (124)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhC
Confidence 56899999999987543
No 9
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=43.28 E-value=38 Score=20.23 Aligned_cols=28 Identities=11% Similarity=0.243 Sum_probs=24.2
Q ss_pred ChhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 034922 49 SSSESACLANCAQRYLDMSVIIMKRFQS 76 (78)
Q Consensus 49 ~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e 76 (78)
+..+..++..|.+-|-++-..+...+.+
T Consensus 65 ~~~~~~al~dC~e~y~~a~~~L~~a~~~ 92 (153)
T 1x91_A 65 DPRSKLAYRSCVDEYESAIGNLEEAFEH 92 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999998888877654
No 10
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=42.51 E-value=40 Score=20.03 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=24.1
Q ss_pred ChhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 034922 49 SSSESACLANCAQRYLDMSVIIMKRFQS 76 (78)
Q Consensus 49 ~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e 76 (78)
+..+..++..|.+-|-++-..+...+.+
T Consensus 65 ~~~~~~al~dC~e~y~~a~~~L~~a~~~ 92 (153)
T 1xg2_B 65 DPKLKGRYETCSENYADAIDSLGQAKQF 92 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999998888776654
No 11
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=27.78 E-value=23 Score=16.02 Aligned_cols=7 Identities=57% Similarity=1.412 Sum_probs=4.7
Q ss_pred hHHHHHH
Q 034922 53 SACLANC 59 (78)
Q Consensus 53 ~~Ci~~C 59 (78)
..|++||
T Consensus 18 rrcldnc 24 (26)
T 2plx_B 18 RRCLDNC 24 (26)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 3577777
No 12
>3ayq_A Lysozyme; inhibitor, hydrolase-hydrolase inhibitor CO; HET: NAG 4NN; 1.77A {Meretrix lusoria} PDB: 3ab6_A*
Probab=32.33 E-value=14 Score=23.03 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=13.0
Q ss_pred HhHHHHHHHHHHHHHHH
Q 034922 52 ESACLANCAQRYLDMSV 68 (78)
Q Consensus 52 E~~Ci~~Cv~ky~~~~~ 68 (78)
.-.|..+||..||.-+.
T Consensus 61 d~~CA~~tV~~Ym~rY~ 77 (122)
T 3ayq_A 61 SSYCASLCVQNYMKRYA 77 (122)
Confidence 56788999999987443
No 13
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Probab=24.35 E-value=92 Score=18.42 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=22.2
Q ss_pred ChhHhHHHHHHHHHHHHHH-HHHHHHHhh
Q 034922 49 SSSESACLANCAQRYLDMS-VIIMKRFQS 76 (78)
Q Consensus 49 ~~~E~~Ci~~Cv~ky~~~~-~~v~~~~~e 76 (78)
+..+..++..|.+.|-++- ..+...+.+
T Consensus 66 ~~~~~~al~dC~e~y~~a~~~~L~~a~~~ 94 (150)
T 2cj4_A 66 PAAWKGPLKNCAFSYKVILTASLPEAIEA 94 (150)
T ss_dssp CGGGHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999998887 577766554
Done!