BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034926
(78 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5R|A Chain A, Structure Determination Of The Small Ubiquitin-Related
Modifier Sumo-1, Nmr, 10 Structures
Length = 103
Score = 61.6 bits (148), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 1 MSGVTNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELN 60
MS P ED + +I LKV GQD +E+ F++K +T LKKL +YC RQ V +N
Sbjct: 3 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 62
Query: 61 SIAFLY 66
S+ FL+
Sbjct: 63 SLRFLF 68
>pdb|3KYD|D Chain D, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 115
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 1 MSGVTNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELN 60
MS P ED + +I LKV GQD +E+ F++K +T LKKL +YC RQ V +N
Sbjct: 20 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 79
Query: 61 SIAFLY 66
S+ FL+
Sbjct: 80 SLRFLF 85
>pdb|2KQS|A Chain A, Phosphorylation Of Sumo-Interacting Motif By Ck2
Enhances Daxx Sumo Binding Activity
Length = 99
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 1 MSGVTNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELN 60
MS P ED + +I LKV GQD +E+ F++K +T LKKL +YC RQ V +N
Sbjct: 3 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 62
Query: 61 SIAFLY 66
S+ FL+
Sbjct: 63 SLRFLF 68
>pdb|1Y8R|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|F Chain F, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1WYW|B Chain B, Crystal Structure Of Sumo1-Conjugated Thymine Dna
Glycosylase
pdb|2PE6|B Chain B, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
pdb|2ASQ|A Chain A, Solution Structure Of Sumo-1 In Complex With A
Sumo-Binding Motif (Sbm)
Length = 97
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 1 MSGVTNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELN 60
MS P ED + +I LKV GQD +E+ F++K +T LKKL +YC RQ V +N
Sbjct: 1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 60
Query: 61 SIAFLY 66
S+ FL+
Sbjct: 61 SLRFLF 66
>pdb|3KYC|D Chain D, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 97
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 1 MSGVTNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELN 60
MS P ED + +I LKV GQD +E+ F++K +T LKKL +YC RQ V +N
Sbjct: 1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 60
Query: 61 SIAFLY 66
S+ FL+
Sbjct: 61 SLRFLF 66
>pdb|1WZ0|A Chain A, Solution Structure Of Human Sumo-2 (Smt3b), A Ubiquitin-
Like Protein
Length = 104
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 5/60 (8%)
Query: 12 DKKP-----NDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
D+KP + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F +
Sbjct: 10 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 69
>pdb|2AWT|A Chain A, Solution Structure Of Human Small Ubiquitin-Like
Modifier Protein Isoform 2 (Sumo-2)
Length = 95
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 5/60 (8%)
Query: 12 DKKP-----NDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
D+KP + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F +
Sbjct: 3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 62
>pdb|2D07|B Chain B, Crystal Structure Of Sumo-3-Modified Thymine-Dna
Glycosylase
pdb|2RPQ|A Chain A, Solution Structure Of A Sumo-Interacting Motif Of Mbd1-
Containing Chromatin-Associated Factor 1 Bound To
Sumo-3
Length = 93
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 5/60 (8%)
Query: 12 DKKP-----NDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
D+KP + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F +
Sbjct: 3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 62
>pdb|2IO1|B Chain B, Crystal Structure Of Human Senp2 In Complex With
Presumo-3
pdb|2IO1|D Chain D, Crystal Structure Of Human Senp2 In Complex With
Presumo-3
pdb|2IO1|F Chain F, Crystal Structure Of Human Senp2 In Complex With
Presumo-3
Length = 94
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F +
Sbjct: 7 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 52
>pdb|2IO3|B Chain B, Crystal Structure Of Human Senp2 In Complex With
Rangap1- Sumo-2
Length = 81
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F +
Sbjct: 5 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 50
>pdb|1WM3|A Chain A, Crystal Structure Of Human Sumo-2 Protein
Length = 72
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F +
Sbjct: 1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 46
>pdb|2IO0|B Chain B, Crystal Structure Of Human Senp2 In Complex With
Presumo-2
Length = 91
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F +
Sbjct: 5 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 50
>pdb|2CKH|B Chain B, Senp1-sumo2 Complex
Length = 79
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F +
Sbjct: 3 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 48
>pdb|3UIN|B Chain B, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
pdb|3UIO|B Chain B, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 80
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F +
Sbjct: 4 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 49
>pdb|2IYD|B Chain B, Senp1 Covalent Complex With Sumo-2
Length = 81
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F +
Sbjct: 3 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 48
>pdb|1WM2|A Chain A, Crystal Structure Of Human Sumo-2 Protein
Length = 78
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F +
Sbjct: 6 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 51
>pdb|2K1F|A Chain A, Sumo-3 From Drosophila Melanogaster (Dsmt3)
Length = 88
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 37/55 (67%)
Query: 12 DKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
D+K ++ HINLKV GQD V F+IK+ T L+KLMNAYCDR + + + F +
Sbjct: 3 DEKKGGETEHINLKVLGQDNAVVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRF 57
>pdb|3RZW|C Chain C, Crystal Structure Of The Monobody Ysmb-9 Bound To Human
Sumo1
pdb|3RZW|D Chain D, Crystal Structure Of The Monobody Ysmb-9 Bound To Human
Sumo1
Length = 99
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 1 MSGVTNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELN 60
MS P ED + +I LKV GQD +E+ F++K +T LKKL +Y RQ V +N
Sbjct: 3 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYAQRQGVPMN 62
Query: 61 SIAFLY 66
S+ FL+
Sbjct: 63 SLRFLF 68
>pdb|1Z5S|B Chain B, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2IO2|B Chain B, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
Length = 82
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 35/49 (71%)
Query: 18 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
+ +I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FL+
Sbjct: 3 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 51
>pdb|1TGZ|B Chain B, Structure Of Human Senp2 In Complex With Sumo-1
pdb|3UIP|B Chain B, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 80
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 35/49 (71%)
Query: 18 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
+ +I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FL+
Sbjct: 1 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 49
>pdb|2IY0|B Chain B, Senp1 (Mutant) Sumo1 Rangap
Length = 82
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
+I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FL+
Sbjct: 2 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 47
>pdb|2IY1|B Chain B, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|D Chain D, Senp1 (Mutant) Full Length Sumo1
Length = 83
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
+I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FL+
Sbjct: 2 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 47
>pdb|2UYZ|B Chain B, Non-Covalent Complex Between Ubc9 And Sumo1
pdb|2VRR|B Chain B, Structure Of Sumo Modified Ubc9
Length = 79
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
+I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FL+
Sbjct: 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 48
>pdb|2G4D|B Chain B, Crystal Structure Of Human Senp1 Mutant (C603s) In
Complex With Sumo-1
pdb|2G4D|D Chain D, Crystal Structure Of Human Senp1 Mutant (C603s) In
Complex With Sumo-1
pdb|2LAS|A Chain A, Molecular Determinants Of Paralogue-Specific Sumo-Sim
Recognition
Length = 78
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
+I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FL+
Sbjct: 2 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 47
>pdb|2BF8|B Chain B, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 77
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
+I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FL+
Sbjct: 1 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 46
>pdb|1U4A|A Chain A, Solution Structure Of Human Sumo-3 C47s
Length = 87
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 32/46 (69%)
Query: 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
HINLKV GQDG+ V F+IKR T L KLM AY +RQ + + I F +
Sbjct: 3 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYSERQGLSMRQIRFRF 48
>pdb|2K8H|A Chain A, Solution Structure Of Sumo From Trypanosoma Brucei
Length = 110
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 17 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
+++A + +KV DG E+FFRIK T LKKL++ YC +Q + NS+ FL+
Sbjct: 22 EETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF 71
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 3/50 (6%)
Query: 21 HINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHI 69
HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FLY I
Sbjct: 21 HINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 54.3 bits (129), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 3/50 (6%)
Query: 21 HINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHI 69
HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FLY I
Sbjct: 21 HINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 54.3 bits (129), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 3/50 (6%)
Query: 21 HINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHI 69
HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FLY I
Sbjct: 21 HINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 54.3 bits (129), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 3/50 (6%)
Query: 21 HINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHI 69
HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FLY I
Sbjct: 21 HINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 3/50 (6%)
Query: 21 HINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHI 69
HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FLY I
Sbjct: 21 HINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68
>pdb|3PGE|A Chain A, Structure Of Sumoylated Pcna
Length = 200
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 37/51 (72%), Gaps = 3/51 (5%)
Query: 20 AHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHI 69
HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FLY I
Sbjct: 28 THINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 76
>pdb|2EKE|C Chain C, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|D Chain D, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 106
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 37/51 (72%), Gaps = 3/51 (5%)
Query: 20 AHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHI 69
HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FLY I
Sbjct: 30 THINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 78
>pdb|3QHT|A Chain A, Crystal Structure Of The Monobody Ysmb-1 Bound To Yeast
Sumo
pdb|3QHT|B Chain B, Crystal Structure Of The Monobody Ysmb-1 Bound To Yeast
Sumo
Length = 98
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 37/51 (72%), Gaps = 3/51 (5%)
Query: 20 AHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHI 69
HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FLY I
Sbjct: 22 THINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 70
>pdb|3TIX|A Chain A, Crystal Structure Of The Chp1-Tas3 Complex Core
pdb|3TIX|C Chain C, Crystal Structure Of The Chp1-Tas3 Complex Core
Length = 207
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 36/48 (75%), Gaps = 3/48 (6%)
Query: 20 AHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FLY
Sbjct: 56 THINLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLY 101
>pdb|1L2N|A Chain A, Smt3 Solution Structure
Length = 101
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 37/51 (72%), Gaps = 3/51 (5%)
Query: 20 AHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHI 69
HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FLY I
Sbjct: 22 THINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 70
>pdb|1EUV|B Chain B, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain
In Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 86
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 36/49 (73%), Gaps = 3/49 (6%)
Query: 19 SAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FLY
Sbjct: 9 ETHINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY 55
>pdb|3V60|A Chain A, Structure Of S. Cerevisiae Pcna Conjugated To Sumo On
Lysine 164
pdb|3V61|A Chain A, Structure Of S. Cerevisiae Pcna Conjugated To Sumo On
Lysine 164
Length = 84
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 36/48 (75%), Gaps = 3/48 (6%)
Query: 20 AHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FLY
Sbjct: 8 THINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY 53
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 36/47 (76%), Gaps = 3/47 (6%)
Query: 21 HINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FLY
Sbjct: 30 HINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY 74
>pdb|3V7O|A Chain A, Crystal Structure Of The C-Terminal Domain Of Ebola
Virus Vp30 (Strain Reston-89)
pdb|3V7O|B Chain B, Crystal Structure Of The C-Terminal Domain Of Ebola
Virus Vp30 (Strain Reston-89)
Length = 227
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 36/47 (76%), Gaps = 3/47 (6%)
Query: 21 HINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FLY
Sbjct: 21 HINLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY 65
>pdb|3IX6|A Chain A, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
pdb|3IX6|B Chain B, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
Length = 360
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 36/48 (75%), Gaps = 3/48 (6%)
Query: 20 AHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FLY
Sbjct: 20 THINLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY 65
>pdb|3V62|A Chain A, Structure Of The S. Cerevisiae Srs2 C-Terminal Domain In
Complex With Pcna Conjugated To Sumo On Lysine 164
pdb|3V62|D Chain D, Structure Of The S. Cerevisiae Srs2 C-Terminal Domain In
Complex With Pcna Conjugated To Sumo On Lysine 164
Length = 84
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 20 AHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66
HINL V DG+ E+FF I +T L++LM A+ RQ E++S+ FLY
Sbjct: 8 THINLXVS--DGSSEIFFXIXXTTPLRRLMEAFAXRQGXEMDSLRFLY 53
>pdb|1I3C|A Chain A, Response Regulator For Cyanobacterial Phytochrome, Rcp1
pdb|1I3C|B Chain B, Response Regulator For Cyanobacterial Phytochrome, Rcp1
Length = 149
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 10 EEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHI 69
E + P ++L + +DG EV IK++ LK++ E + IA +H+
Sbjct: 55 EYENSPRPNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHV 114
Query: 70 SAFLA 74
+ +L
Sbjct: 115 NCYLT 119
>pdb|1JLK|A Chain A, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
pdb|1JLK|B Chain B, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
Length = 147
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 10 EEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHI 69
E + P ++L + +DG EV IK++ LK++ E + IA +H+
Sbjct: 55 EYENSPRPNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHV 114
Query: 70 SAFLA 74
+ +L
Sbjct: 115 NCYLT 119
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
pdb|1K66|B Chain B, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
Length = 149
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 12 DKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKL 47
D P ++L + G DG EV IK+ LKK+
Sbjct: 58 DIAPRPAVILLDLNLPGTDGREVLQEIKQDEVLKKI 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,143,589
Number of Sequences: 62578
Number of extensions: 63841
Number of successful extensions: 160
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108
Number of HSP's gapped (non-prelim): 52
length of query: 78
length of database: 14,973,337
effective HSP length: 47
effective length of query: 31
effective length of database: 12,032,171
effective search space: 372997301
effective search space used: 372997301
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)