Query 034926
Match_columns 78
No_of_seqs 107 out of 304
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 12:35:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034926.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034926hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l76_A Nfatc2-interacting prot 99.9 3.3E-24 1.1E-28 136.0 8.4 57 18-75 18-74 (95)
2 3kyd_D Small ubiquitin-related 99.9 2E-24 6.8E-29 140.7 7.6 74 1-74 20-93 (115)
3 2jxx_A Nfatc2-interacting prot 99.9 6.3E-22 2.2E-26 125.4 8.0 58 18-75 22-80 (97)
4 3pge_A SUMO-modified prolifera 99.9 6.4E-22 2.2E-26 138.8 7.6 68 7-75 14-82 (200)
5 3tix_A Ubiquitin-like protein 99.9 7E-22 2.4E-26 139.1 6.2 68 7-75 42-110 (207)
6 2k8h_A Small ubiquitin protein 99.8 6.3E-21 2.2E-25 122.9 8.1 63 12-74 17-79 (110)
7 2d07_B Ubiquitin-like protein 99.8 7.9E-21 2.7E-25 118.5 7.8 58 18-75 14-71 (93)
8 2eke_C Ubiquitin-like protein 99.8 2.2E-20 7.4E-25 119.8 8.9 64 11-75 20-84 (106)
9 1wm3_A Ubiquitin-like protein 99.8 1.6E-20 5.5E-25 111.7 6.7 55 21-75 1-55 (72)
10 1wz0_A Ubiquitin-like protein 99.8 2.1E-20 7E-25 119.2 7.3 58 18-75 21-78 (104)
11 3uf8_A Ubiquitin-like protein 99.8 1.4E-20 4.7E-25 131.3 6.9 64 12-76 11-75 (209)
12 2io0_B Small ubiquitin-related 99.8 3.9E-20 1.3E-24 115.4 7.6 57 19-75 3-59 (91)
13 3a4r_A Nfatc2-interacting prot 99.8 5.3E-20 1.8E-24 111.5 7.7 57 19-75 5-62 (79)
14 3v7o_A Minor nucleoprotein VP3 99.8 2.1E-21 7.2E-26 138.2 0.0 63 12-75 11-74 (227)
15 2io1_B Small ubiquitin-related 99.8 2.4E-19 8E-24 112.1 7.3 58 18-75 4-61 (94)
16 4da1_A Protein phosphatase 1K, 99.7 4.4E-19 1.5E-23 131.5 0.0 66 9-75 17-83 (389)
17 3ix6_A TS, tsase, thymidylate 99.7 1.3E-18 4.3E-23 130.7 0.0 58 17-75 17-74 (360)
18 3goe_A DNA repair protein RAD6 99.5 1.1E-14 3.7E-19 89.9 6.5 55 21-75 9-64 (82)
19 1wyw_B Ubiquitin-like protein 99.5 1.9E-13 6.5E-18 84.5 7.5 74 1-74 1-74 (97)
20 2uyz_B Small ubiquitin-related 99.1 2.2E-10 7.5E-15 67.3 7.4 55 20-74 2-56 (79)
21 3dbh_I NEDD8; cell cycle, acti 98.3 5.8E-06 2E-10 48.6 7.5 56 18-73 9-64 (88)
22 4hcn_B Polyubiquitin, ubiquiti 98.2 5E-06 1.7E-10 50.7 6.1 58 17-74 18-75 (98)
23 1ttn_A DC-UBP, dendritic cell- 98.2 8.3E-06 2.8E-10 50.5 7.0 55 18-72 20-74 (106)
24 3n3k_B Ubiquitin; hydrolase, p 98.2 6.2E-06 2.1E-10 48.1 6.0 54 21-74 3-56 (85)
25 1wh3_A 59 kDa 2'-5'-oligoadeny 98.1 1.7E-05 5.7E-10 46.7 7.6 54 20-73 6-59 (87)
26 3mtn_B UBA80, ubcep1, ubiquiti 98.1 1.3E-05 4.4E-10 46.6 7.0 55 20-74 2-56 (85)
27 3v6c_B Ubiquitin; structural g 98.1 1.9E-05 6.5E-10 47.3 7.8 57 18-74 14-70 (91)
28 1ndd_A NEDD8, protein (ubiquit 98.1 1.7E-05 5.7E-10 45.0 6.7 52 22-73 1-52 (76)
29 3phx_B Ubiquitin-like protein 98.1 2.9E-05 1E-09 44.9 7.6 54 21-74 4-57 (79)
30 3vdz_A Ubiquitin-40S ribosomal 98.0 2.9E-05 1E-09 48.5 7.9 55 20-74 34-88 (111)
31 1j8c_A Ubiquitin-like protein 98.0 9.5E-05 3.3E-09 47.4 10.4 53 19-72 30-82 (125)
32 4dwf_A HLA-B-associated transc 98.0 4.4E-05 1.5E-09 45.3 8.1 54 20-73 4-57 (90)
33 3a9j_A Ubiquitin; protein comp 98.0 2.5E-05 8.6E-10 44.2 6.6 51 23-73 2-52 (76)
34 2dzi_A Ubiquitin-like protein 98.0 5.5E-05 1.9E-09 43.6 7.4 54 20-73 6-59 (81)
35 2hj8_A Interferon-induced 17 k 97.9 4.6E-05 1.6E-09 45.4 6.7 52 21-72 4-55 (88)
36 3k9o_B Ubiquitin, UBB+1; E2-25 97.9 4.5E-05 1.5E-09 45.6 6.7 53 22-74 2-54 (96)
37 2bwf_A Ubiquitin-like protein 97.9 6.8E-05 2.3E-09 42.8 6.8 51 22-73 5-55 (77)
38 2ojr_A Ubiquitin; lanthide-bin 97.9 7.3E-05 2.5E-09 46.5 7.4 54 20-73 34-87 (111)
39 1yx5_B Ubiquitin; proteasome, 97.8 7.5E-05 2.6E-09 45.1 6.7 51 23-73 2-52 (98)
40 1wx8_A Riken cDNA 4931431F19; 97.8 0.00017 5.8E-09 43.3 7.9 53 19-72 15-67 (96)
41 4eew_A Large proline-rich prot 97.8 0.00017 5.9E-09 42.5 7.8 55 19-73 15-69 (88)
42 1wx7_A Ubiquilin 3; ubiquitin- 97.7 0.00027 9.3E-09 43.4 8.4 54 18-72 14-67 (106)
43 2faz_A Ubiquitin-like containi 97.7 0.00016 5.5E-09 41.5 6.8 53 21-73 2-56 (78)
44 3u30_A Ubiquitin, linear DI-ub 97.7 0.00013 4.6E-09 48.0 7.2 60 15-74 14-73 (172)
45 1wy8_A NP95-like ring finger p 97.7 0.00037 1.3E-08 41.0 8.1 54 20-73 6-61 (89)
46 1sif_A Ubiquitin; hydrophobic 97.6 0.00015 5.2E-09 43.2 6.0 53 21-73 9-61 (88)
47 3b08_A Polyubiquitin-C, ubiqui 97.6 0.00031 1.1E-08 44.4 7.4 53 21-73 76-128 (152)
48 2l7r_A Ubiquitin-like protein 97.6 0.00017 5.7E-09 43.6 5.8 52 20-73 18-69 (93)
49 1yqb_A Ubiquilin 3; structural 97.6 0.0004 1.4E-08 42.6 7.6 53 19-72 20-72 (100)
50 2klc_A Ubiquilin-1; ubiquitin- 97.6 0.0005 1.7E-08 42.1 7.7 54 19-73 23-76 (101)
51 2daf_A FLJ35834 protein; hypot 97.5 0.00093 3.2E-08 43.3 9.1 55 20-74 14-69 (118)
52 2al3_A TUG long isoform; TUG U 97.5 0.00021 7.1E-09 44.5 5.6 54 22-75 10-63 (90)
53 4fbj_B NEDD8; effector-HOST ta 97.5 0.00029 9.9E-09 42.0 6.1 53 22-74 1-53 (88)
54 2wyq_A HHR23A, UV excision rep 97.5 0.00075 2.6E-08 39.1 7.7 52 21-72 5-59 (85)
55 1uel_A HHR23B, UV excision rep 97.4 0.00087 3E-08 40.3 6.9 50 23-72 2-54 (95)
56 3plu_A Ubiquitin-like modifier 97.4 0.0012 4E-08 41.1 7.5 54 20-73 20-73 (93)
57 3rt3_B Ubiquitin-like protein 97.4 0.0012 4.2E-08 42.5 7.9 55 19-73 79-133 (159)
58 3m62_B UV excision repair prot 97.3 0.00046 1.6E-08 42.6 5.2 52 22-73 2-53 (106)
59 1uh6_A Ubiquitin-like 5; beta- 97.3 0.0024 8.1E-08 40.0 8.2 53 20-72 27-79 (100)
60 2kk8_A Uncharacterized protein 97.3 0.0018 6.3E-08 38.4 7.4 53 20-72 9-62 (84)
61 3b08_A Polyubiquitin-C, ubiqui 97.3 0.001 3.5E-08 42.0 6.6 51 23-73 2-52 (152)
62 3b1l_X E3 ubiquitin-protein li 96.3 5E-05 1.7E-09 43.5 0.0 51 23-73 2-52 (76)
63 2kan_A Uncharacterized protein 97.2 0.0032 1.1E-07 38.0 8.2 53 19-72 13-65 (94)
64 1wia_A Hypothetical ubiquitin- 97.1 0.0016 5.3E-08 39.0 6.1 51 20-73 6-56 (95)
65 2kdi_A Ubiquitin, vacuolar pro 97.0 0.0029 1E-07 39.5 6.7 51 22-72 10-60 (114)
66 3l0w_B Monoubiquitinated proli 97.0 0.0025 8.6E-08 42.5 6.7 51 23-73 2-52 (169)
67 3m63_B Ubiquitin domain-contai 97.0 0.00035 1.2E-08 43.0 2.2 54 19-73 26-79 (101)
68 1we7_A SF3A1 protein; structur 96.9 0.0053 1.8E-07 38.1 7.2 53 20-72 24-86 (115)
69 3q3f_A Ribonuclease/ubiquitin 96.8 0.0036 1.2E-07 42.9 6.3 53 22-74 106-158 (189)
70 1v86_A DNA segment, CHR 7, way 96.7 0.0028 9.5E-08 38.3 4.8 56 15-71 11-66 (95)
71 4a20_A Ubiquitin-like protein 96.6 0.011 3.7E-07 36.4 7.1 55 19-73 17-74 (98)
72 1wgd_A Homocysteine-responsive 96.6 0.0081 2.8E-07 35.7 6.3 53 20-72 6-62 (93)
73 2lxa_A Ubiquitin-like protein 96.6 0.0057 1.9E-07 36.9 5.5 52 22-73 2-56 (87)
74 1wxv_A BAG-family molecular ch 96.5 0.019 6.6E-07 33.9 7.5 53 20-73 6-63 (92)
75 1we6_A Splicing factor, putati 96.5 0.0056 1.9E-07 37.7 5.0 53 20-72 26-82 (111)
76 3u5e_m 60S ribosomal protein L 96.4 0.00053 1.8E-08 43.6 0.0 51 23-73 2-52 (128)
77 1wju_A NEDD8 ultimate buster-1 96.2 0.011 3.7E-07 36.9 5.4 53 21-73 17-71 (100)
78 1x1m_A Ubiquitin-like protein 96.2 0.014 4.8E-07 35.8 5.8 53 21-73 12-79 (107)
79 1wgh_A Ubiquitin-like 3, HCG-1 96.2 0.04 1.4E-06 35.0 8.0 55 19-73 14-76 (116)
80 1v5o_A 1700011N24RIK protein; 96.1 0.032 1.1E-06 33.8 7.0 52 21-72 7-62 (102)
81 1v2y_A 3300001G02RIK protein; 96.1 0.011 3.9E-07 36.9 4.9 54 19-72 5-73 (105)
82 3u30_A Ubiquitin, linear DI-ub 96.0 0.02 6.8E-07 37.4 6.3 53 21-73 96-148 (172)
83 1wgg_A Ubiquitin carboxyl-term 96.0 0.02 6.7E-07 34.6 5.6 52 20-72 6-58 (96)
84 3u5c_f 40S ribosomal protein S 96.0 0.0012 4E-08 43.8 0.0 52 23-74 2-53 (152)
85 3rt3_B Ubiquitin-like protein 95.9 0.023 8E-07 36.4 6.1 52 22-73 3-56 (159)
86 2gow_A HCG-1 protein, ubiquiti 95.8 0.036 1.2E-06 35.6 6.7 55 19-73 15-77 (125)
87 2kd0_A LRR repeats and ubiquit 95.8 0.034 1.2E-06 32.7 6.1 51 22-73 13-63 (85)
88 1v5t_A 8430435I17RIK protein; 95.7 0.021 7.2E-07 33.9 4.9 51 21-72 7-61 (90)
89 2kjr_A CG11242; UBL, ubiquitin 95.4 0.12 4E-06 31.4 7.7 52 19-70 13-68 (95)
90 1se9_A Ubiquitin family; ubiqu 95.4 0.083 2.8E-06 34.1 7.1 54 20-73 15-76 (126)
91 3ai5_A Yeast enhanced green fl 95.3 0.069 2.4E-06 39.0 7.3 54 19-72 231-284 (307)
92 2kdb_A Homocysteine-responsive 95.1 0.074 2.5E-06 32.6 6.1 54 20-73 22-79 (99)
93 2fnj_B Transcription elongatio 95.0 0.11 3.8E-06 33.2 6.9 50 22-72 3-52 (118)
94 2kj6_A Tubulin folding cofacto 94.4 0.18 6.2E-06 30.7 6.5 51 19-69 12-64 (97)
95 1oqy_A HHR23A, UV excision rep 94.1 0.059 2E-06 40.1 4.5 53 20-72 6-61 (368)
96 1t0y_A Tubulin folding cofacto 94.1 0.21 7.1E-06 31.2 6.4 49 20-68 5-54 (122)
97 4dbg_A Ranbp-type and C3HC4-ty 94.1 0.24 8.2E-06 31.0 6.6 51 21-71 24-76 (105)
98 2kzr_A Ubiquitin thioesterase 94.0 0.029 9.9E-07 32.9 2.2 48 23-71 2-52 (86)
99 1wf9_A NPL4 family protein; be 93.9 0.059 2E-06 33.0 3.5 49 20-69 6-55 (107)
100 2xzm_9 RPS31E; ribosome, trans 93.0 0.018 6E-07 39.7 0.0 51 23-73 2-52 (189)
101 1v6e_A Cytoskeleton-associated 92.9 0.18 6.1E-06 30.0 4.4 48 21-68 7-55 (95)
102 4ajy_B Transcription elongatio 92.8 0.54 1.8E-05 30.1 6.8 51 22-73 3-53 (118)
103 4efo_A Serine/threonine-protei 92.6 0.38 1.3E-05 29.6 5.7 52 23-74 14-66 (94)
104 2kvr_A Ubiquitin carboxyl-term 92.5 0.13 4.3E-06 33.2 3.5 33 34-66 58-90 (130)
105 2cr5_A Reproduction 8; UBX dom 92.2 1 3.4E-05 27.7 7.4 46 19-65 21-66 (109)
106 2daj_A KIAA0977 protein, COBL- 92.2 0.58 2E-05 28.9 6.1 54 15-68 4-57 (91)
107 2dzj_A Synaptic glycoprotein S 90.6 0.25 8.7E-06 29.3 3.3 52 20-71 9-66 (88)
108 1oey_A P67-PHOX, neutrophil cy 90.4 0.95 3.2E-05 27.3 5.7 44 21-66 5-48 (83)
109 1vd2_A Protein kinase C, IOTA 90.3 1.9 6.7E-05 26.1 7.8 56 19-75 4-63 (89)
110 1wjn_A Tubulin-folding protein 90.0 1.1 3.6E-05 26.5 5.8 50 19-68 7-59 (97)
111 2ylm_A Ubiquitin carboxyl-term 85.8 1 3.5E-05 34.6 4.6 33 34-66 38-70 (530)
112 3qij_A Protein 4.1; cytoskelet 85.5 1.4 4.7E-05 31.0 4.9 48 19-66 15-63 (296)
113 3shq_A UBLCP1; phosphatase, hy 85.5 1 3.4E-05 32.7 4.2 52 20-72 4-58 (320)
114 3ivf_A Talin-1; FERM domain, c 83.9 2.8 9.6E-05 30.1 6.0 47 20-66 84-131 (371)
115 1h4r_A Merlin; FERM, neurofibr 82.6 3.2 0.00011 28.9 5.8 51 19-70 20-73 (314)
116 3qx1_A FAS-associated factor 1 82.2 5.3 0.00018 23.0 7.1 44 21-65 7-50 (84)
117 1ef1_A Moesin; membrane, FERM 82.2 2.5 8.4E-05 29.2 5.0 45 21-66 1-46 (294)
118 2dzk_A UBX domain-containing p 81.3 7.1 0.00024 23.8 7.2 46 20-65 12-57 (109)
119 1wj4_A KIAA0794 protein; UBX d 78.7 9.7 0.00033 23.8 7.2 46 19-65 41-86 (124)
120 2i1j_A Moesin; FERM, coiled-co 76.3 8.6 0.00029 29.8 6.8 46 20-66 3-49 (575)
121 4b6w_A Tubulin-specific chaper 74.0 11 0.00037 22.0 6.2 45 22-66 3-49 (86)
122 3au4_A Myosin-X; protein-prote 71.1 20 0.00068 27.1 7.6 48 19-66 214-263 (555)
123 2kc2_A Talin-1, F1; FERM, adhe 70.9 9.7 0.00033 24.4 5.1 40 21-60 11-50 (128)
124 2dzm_A FAS-associated factor 1 70.1 13 0.00045 22.4 5.3 45 21-66 9-53 (100)
125 2pjh_A Protein NPL4, nuclear p 67.5 1.4 4.6E-05 25.7 0.4 41 21-62 4-44 (80)
126 2dhz_A RAP guanine nucleotide 66.0 12 0.00039 23.9 4.6 55 19-73 7-70 (120)
127 3pvl_A Myosin VIIA isoform 1; 65.8 14 0.00047 29.1 5.9 48 19-66 261-309 (655)
128 1wgy_A RAP guanine nucleotide 62.4 8.8 0.0003 23.9 3.5 55 19-73 7-64 (104)
129 3u7z_A Putative metal binding 60.9 16 0.00055 22.4 4.5 23 18-40 5-27 (101)
130 2bkf_A Zinc-finger protein NBR 60.2 26 0.00088 21.2 6.3 52 21-75 6-62 (87)
131 2k9i_A Plasmid PRN1, complete 57.8 4.3 0.00015 21.1 1.2 29 33-61 9-37 (55)
132 3jyu_A Ubiquitin carboxyl-term 56.5 22 0.00075 24.2 5.0 46 21-66 139-187 (231)
133 2ylm_A Ubiquitin carboxyl-term 52.3 34 0.0012 26.1 5.9 45 21-65 239-286 (530)
134 1wj6_A KIAA0049 protein, RSGI 47.5 46 0.0016 20.6 4.9 52 21-75 14-70 (101)
135 4a3p_A Ubiquitin carboxyl-term 47.0 39 0.0013 22.6 5.0 46 21-66 127-175 (217)
136 3c12_A FLGD, flagellar protein 46.3 45 0.0015 20.7 4.9 36 19-70 38-74 (138)
137 2gw6_A TRNA-splicing endonucle 45.6 27 0.00093 21.9 3.8 21 19-39 102-122 (123)
138 3fcg_A F1 capsule-anchoring pr 44.9 29 0.00098 20.8 3.6 26 15-40 55-80 (90)
139 3ebr_A Uncharacterized RMLC-li 43.7 32 0.0011 22.0 4.0 35 26-62 120-154 (159)
140 1q1o_A Cell division control p 42.9 37 0.0013 20.8 4.0 47 20-66 4-62 (98)
141 2kel_A SVTR protein, uncharact 41.7 23 0.00077 19.3 2.6 32 30-61 10-41 (56)
142 3osv_A Flagellar basal-BODY RO 41.4 51 0.0017 20.4 4.6 35 20-70 37-72 (138)
143 4hti_A Receptor-type tyrosine- 41.0 25 0.00086 21.7 3.0 22 19-43 42-63 (99)
144 1s3s_G P47 protein; AAA ATPase 40.5 64 0.0022 19.9 5.8 46 20-65 51-97 (127)
145 1d8w_A L-rhamnose isomerase; b 40.3 18 0.0006 27.7 2.6 21 40-60 387-407 (426)
146 2jvf_A De novo protein M7; tet 40.2 31 0.0011 20.7 3.2 31 21-52 7-43 (96)
147 3hwu_A Putative DNA-binding pr 39.7 65 0.0022 20.3 5.0 33 30-62 11-43 (147)
148 2l32_A Small archaeal modifier 39.6 32 0.0011 19.4 3.2 49 21-75 2-50 (74)
149 3p14_A L-rhamnose isomerase; T 39.5 16 0.00054 27.9 2.2 21 40-60 385-405 (424)
150 1k3e_A CEST; chaperone, secret 38.2 40 0.0014 22.2 3.8 29 41-69 2-36 (156)
151 2zjd_A Microtubule-associated 36.2 82 0.0028 19.9 5.1 54 20-73 34-95 (130)
152 2bps_A YUKD protein; ubiquitin 35.5 67 0.0023 18.7 5.6 41 19-59 2-44 (81)
153 1wz3_A Autophagy 12B, ATG12B, 34.9 63 0.0022 19.4 4.1 50 19-71 11-64 (96)
154 2cpg_A REPA protein, transcrip 34.5 14 0.00047 18.3 0.9 26 35-60 4-29 (45)
155 3abf_A 4-oxalocrotonate tautom 34.4 48 0.0016 17.0 3.2 26 43-68 20-45 (64)
156 1p94_A Plasmid partition prote 33.6 11 0.00039 21.9 0.5 32 30-61 31-62 (76)
157 1ryj_A Unknown; beta/alpha pro 32.3 64 0.0022 17.6 5.5 50 21-75 4-53 (70)
158 2kmm_A Guanosine-3',5'-BIS(dip 32.2 61 0.0021 17.2 4.1 49 24-76 3-51 (73)
159 1y8x_B Ubiquitin-activating en 29.8 50 0.0017 20.0 3.0 39 34-72 7-49 (98)
160 2al6_A Focal adhesion kinase 1 29.3 62 0.0021 23.2 3.9 36 23-58 9-48 (375)
161 2qt7_A Receptor-type tyrosine- 28.8 54 0.0018 19.9 3.0 21 19-42 35-55 (91)
162 2lkz_A RNA-binding protein 5; 28.5 30 0.001 19.9 1.8 36 35-76 57-92 (95)
163 3m20_A 4-oxalocrotonate tautom 28.1 44 0.0015 17.6 2.3 25 44-68 19-43 (62)
164 1m1s_A WR4; structural genomic 27.8 67 0.0023 19.9 3.4 25 19-43 24-48 (116)
165 2gmq_A Hypothetical protein EF 27.7 77 0.0026 19.8 3.6 55 20-74 21-76 (118)
166 1ois_A DNA topoisomerase I; DN 27.7 20 0.00067 25.2 1.0 17 59-75 23-39 (223)
167 3nrx_A Protein regulator of cy 26.9 46 0.0016 21.2 2.6 25 43-72 69-93 (130)
168 4gmv_A RAS-associated and plec 25.8 1.8E+02 0.006 20.5 6.6 41 18-58 28-68 (281)
169 1msp_A MSP, major sperm protei 25.7 84 0.0029 19.2 3.6 25 19-43 26-50 (126)
170 3hvz_A Uncharacterized protein 25.6 1E+02 0.0034 17.6 4.7 50 23-76 7-56 (78)
171 1z9l_A Vesicle-associated memb 25.6 56 0.0019 19.9 2.8 24 21-44 30-53 (128)
172 3lxf_A Ferredoxin; iron, iron- 25.6 1.1E+02 0.0036 17.9 4.2 27 23-49 2-28 (104)
173 2bti_A Carbon storage regulato 25.4 82 0.0028 17.7 3.2 22 19-40 17-38 (63)
174 1wgr_A Growth factor receptor- 24.2 1.3E+02 0.0043 18.3 5.9 40 19-58 7-46 (100)
175 1bm4_A Protein (moloney murine 24.0 37 0.0013 16.9 1.4 13 40-52 15-27 (32)
176 2hc5_A ORF 99, hypothetical pr 24.0 61 0.0021 20.1 2.7 38 19-57 66-103 (117)
177 1v0a_A Endoglucanase H; carboh 23.5 60 0.0021 21.7 2.8 21 20-40 69-91 (178)
178 1row_A SSP-19, MSP-domain prot 23.3 58 0.002 19.7 2.5 23 21-43 18-40 (109)
179 2ba3_A NIKA; dimer, bacterial 23.3 84 0.0029 15.9 3.0 27 34-60 16-42 (51)
180 3htn_A Putative DNA binding pr 23.1 1.5E+02 0.005 18.6 4.7 33 29-61 13-45 (149)
181 2jpp_A Translational repressor 22.9 1E+02 0.0035 17.8 3.3 22 19-40 15-36 (70)
182 3o6q_A Stage II sporulation pr 22.7 40 0.0014 22.4 1.7 24 42-65 50-73 (157)
183 3qoq_A Alginate and motility r 22.5 70 0.0024 18.2 2.6 27 35-61 21-47 (69)
184 1914_A Signal recognition part 22.2 1.4E+02 0.0046 20.9 4.4 30 19-49 181-210 (232)
185 2npt_A Dual specificity mitoge 22.2 1.5E+02 0.0051 18.3 6.2 56 19-75 12-72 (106)
186 1wic_A Hypothetical protein ri 21.5 71 0.0024 20.3 2.7 24 21-44 38-61 (152)
187 2cri_A Vesicle-associated memb 21.1 1.2E+02 0.004 18.9 3.7 24 21-44 34-57 (147)
188 1wfy_A Regulator of G-protein 20.8 53 0.0018 20.4 1.9 46 20-65 15-61 (104)
189 1t1h_A Gspef-atpub14, armadill 20.8 52 0.0018 17.7 1.7 21 38-58 58-78 (78)
190 2h6l_A Hypothetical protein; N 20.4 1.6E+02 0.0054 18.3 4.2 33 29-61 7-39 (146)
191 2opa_A Probable tautomerase YW 20.1 86 0.0029 15.8 2.5 24 44-67 20-43 (61)
192 3mb2_A 4-oxalocrotonate tautom 20.1 90 0.0031 16.7 2.7 24 44-67 21-44 (72)
No 1
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=99.91 E-value=3.3e-24 Score=135.99 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=53.5
Q ss_pred CCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeeccee
Q 034926 18 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLAW 75 (78)
Q Consensus 18 ~~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~~ 75 (78)
.+.+|+|||++ +|++++||||++|||+|||+|||+|+|++++++||+|||.||.++.
T Consensus 18 ~~~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~ 74 (95)
T 2l76_A 18 TPRLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTA 74 (95)
T ss_dssp CCCCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTS
T ss_pred CCCeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCC
Confidence 46789999995 8999999999999999999999999999999999999999998763
No 2
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.91 E-value=2e-24 Score=140.72 Aligned_cols=74 Identities=39% Similarity=0.600 Sum_probs=53.7
Q ss_pred CCCCCCCCCCcCCCCCCCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecce
Q 034926 1 MSGVTNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLA 74 (78)
Q Consensus 1 m~~~~~~~~~~~~kp~~~~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~ 74 (78)
||+++..++.++..+..++.+|+|+|++++|.+|+|+|+++|+|+|||++||++.|++++++||+|||+||.+.
T Consensus 20 ~~~~~~~~~~~~~~~k~~~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~ 93 (115)
T 3kyd_D 20 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADN 93 (115)
T ss_dssp -------------------CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTT
T ss_pred cccccccCccccccCCCCCCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCC
Confidence 45444333333333444578999999999999999999999999999999999999999999999999999875
No 3
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=99.86 E-value=6.3e-22 Score=125.42 Aligned_cols=58 Identities=19% Similarity=0.324 Sum_probs=54.4
Q ss_pred CCCcEEEEEEccCCC-EEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeeccee
Q 034926 18 QSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLAW 75 (78)
Q Consensus 18 ~~~~I~lkV~~qdg~-~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~~ 75 (78)
++++|+|+|++++|+ +++|+||++|+|+|||+|||+++|++++++||+|||.||.+..
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~ 80 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRE 80 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCS
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCC
Confidence 467999999999995 8999999999999999999999999999999999999998753
No 4
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.86 E-value=6.4e-22 Score=138.78 Aligned_cols=68 Identities=38% Similarity=0.656 Sum_probs=54.5
Q ss_pred CCCCcCCCCC-CCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeeccee
Q 034926 7 TPQEEDKKPN-DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLAW 75 (78)
Q Consensus 7 ~~~~~~~kp~-~~~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~~ 75 (78)
+..++++||. +++.+|+|||++ +|.+++|+|+++|+|+|||++||+|+|++++++||+|||+||....
T Consensus 14 ~~~~~~~kp~~~~~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~ 82 (200)
T 3pge_A 14 QEAKPEVKPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQ 82 (200)
T ss_dssp -----------CCCCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTC
T ss_pred cccccccCCCCCCCCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCC
Confidence 4455678886 578999999974 9999999999999999999999999999999999999999998753
No 5
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=99.85 E-value=7e-22 Score=139.09 Aligned_cols=68 Identities=38% Similarity=0.668 Sum_probs=53.3
Q ss_pred CCCCcCCCCC-CCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeeccee
Q 034926 7 TPQEEDKKPN-DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLAW 75 (78)
Q Consensus 7 ~~~~~~~kp~-~~~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~~ 75 (78)
..+++|+||+ +++++|+|||. ++|++|+|+||++|+|+|||++||+++|++++++||+|||+||.+..
T Consensus 42 ~~~~~d~KP~~dp~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~dd 110 (207)
T 3tix_A 42 QEAKPEVKPEVKPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQ 110 (207)
T ss_dssp -------------CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSC
T ss_pred CCCCCCCCCCCCCCCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCC
Confidence 3466688887 57899999997 59999999999999999999999999999999999999999998753
No 6
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.84 E-value=6.3e-21 Score=122.89 Aligned_cols=63 Identities=37% Similarity=0.627 Sum_probs=57.9
Q ss_pred CCCCCCCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecce
Q 034926 12 DKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLA 74 (78)
Q Consensus 12 ~~kp~~~~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~ 74 (78)
..++++++.+|+|+|++++|.+++|+|+++|+|++||++||++.|++++++||+|||.||.+.
T Consensus 17 ~~~~~~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~ 79 (110)
T 2k8h_A 17 EGTCKEETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDET 79 (110)
T ss_dssp CCCCCCCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSS
T ss_pred cCCCCCCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCC
Confidence 334556678999999999999999999999999999999999999999999999999999875
No 7
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.84 E-value=7.9e-21 Score=118.45 Aligned_cols=58 Identities=47% Similarity=0.687 Sum_probs=54.6
Q ss_pred CCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeeccee
Q 034926 18 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLAW 75 (78)
Q Consensus 18 ~~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~~ 75 (78)
++.+|+|+|++++|++++|+|+++|+|++||++||++.|++++++||+|||.||.+..
T Consensus 14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~ 71 (93)
T 2d07_B 14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETD 71 (93)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTC
T ss_pred CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCC
Confidence 4679999999999999999999999999999999999999999999999999998753
No 8
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.83 E-value=2.2e-20 Score=119.80 Aligned_cols=64 Identities=41% Similarity=0.698 Sum_probs=57.3
Q ss_pred cCCCCC-CCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeeccee
Q 034926 11 EDKKPN-DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLAW 75 (78)
Q Consensus 11 ~~~kp~-~~~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~~ 75 (78)
++.+|. +++.+|+|+|++ +|.+++|+|+++|+|+|||++||++.|++++++||+|||.||....
T Consensus 20 ~~~~~~~~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~ 84 (106)
T 2eke_C 20 SEVKPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQ 84 (106)
T ss_dssp CCCCCCCCCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTC
T ss_pred cccCCCCCCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCC
Confidence 344443 467899999999 9999999999999999999999999999999999999999998753
No 9
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.82 E-value=1.6e-20 Score=111.70 Aligned_cols=55 Identities=49% Similarity=0.716 Sum_probs=52.8
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeeccee
Q 034926 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLAW 75 (78)
Q Consensus 21 ~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~~ 75 (78)
||+|+|++++|.+++|+|+++|+|++||++||++.|++++++||+|||.||.+..
T Consensus 1 ~i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~ 55 (72)
T 1wm3_A 1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETD 55 (72)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTC
T ss_pred CEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCC
Confidence 6999999999999999999999999999999999999999999999999998753
No 10
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.82 E-value=2.1e-20 Score=119.22 Aligned_cols=58 Identities=47% Similarity=0.687 Sum_probs=55.0
Q ss_pred CCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeeccee
Q 034926 18 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLAW 75 (78)
Q Consensus 18 ~~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~~ 75 (78)
++.+|+|+|++++|.+++|+|+++|+|++||++||++.|++++++||+|||.||.+..
T Consensus 21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~ 78 (104)
T 1wz0_A 21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETD 78 (104)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTS
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCC
Confidence 4679999999999999999999999999999999999999999999999999998753
No 11
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=99.82 E-value=1.4e-20 Score=131.26 Aligned_cols=64 Identities=41% Similarity=0.700 Sum_probs=55.0
Q ss_pred CCCCC-CCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecceee
Q 034926 12 DKKPN-DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLAWA 76 (78)
Q Consensus 12 ~~kp~-~~~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~~~ 76 (78)
++||+ .++++|+|||++ +|++++|+||++|+|+|||++||+++|++++++||+|||++|.+++.
T Consensus 11 ~~~~~~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~T 75 (209)
T 3uf8_A 11 EVKPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQT 75 (209)
T ss_dssp -------CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCC
T ss_pred cccceeCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCC
Confidence 35565 357899999998 88999999999999999999999999999999999999999998753
No 12
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.82 E-value=3.9e-20 Score=115.36 Aligned_cols=57 Identities=47% Similarity=0.695 Sum_probs=53.8
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeeccee
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLAW 75 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~~ 75 (78)
+++|+|+|++++|++++|+|+++|+|++||++||++.|++++++||+|||.||.+..
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~ 59 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETD 59 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCC
Confidence 468999999999999999999999999999999999999999999999999998753
No 13
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.81 E-value=5.3e-20 Score=111.51 Aligned_cols=57 Identities=18% Similarity=0.281 Sum_probs=53.8
Q ss_pred CCcEEEEEEccCCC-EEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeeccee
Q 034926 19 SAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLAW 75 (78)
Q Consensus 19 ~~~I~lkV~~qdg~-~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~~ 75 (78)
+++|+|+|++++|+ +++|+|+++|+|++||++||++.|++++++||+|||.||.+..
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~ 62 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKE 62 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCC
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCC
Confidence 56899999999996 8999999999999999999999999999999999999998753
No 14
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=99.80 E-value=2.1e-21 Score=138.15 Aligned_cols=63 Identities=41% Similarity=0.714 Sum_probs=0.0
Q ss_pred CCCCC-CCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeeccee
Q 034926 12 DKKPN-DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLAW 75 (78)
Q Consensus 12 ~~kp~-~~~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~~ 75 (78)
++||+ +++++|+||| +++|++++|+||++|||+|||++||+++|++++++||+|||+||.+..
T Consensus 11 ~~~~~~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~ddd 74 (227)
T 3v7o_A 11 EVKPEVKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQ 74 (227)
T ss_dssp -----------------------------------------------------------------
T ss_pred ccCCCCCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCC
Confidence 35564 4578999999 889999999999999999999999999999999999999999998753
No 15
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=2.4e-19 Score=112.14 Aligned_cols=58 Identities=47% Similarity=0.677 Sum_probs=53.8
Q ss_pred CCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeeccee
Q 034926 18 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLAW 75 (78)
Q Consensus 18 ~~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~~ 75 (78)
.+++|+|+|++++|++++|+|+++|+|++||++||++.|++++++||+|||+||.+..
T Consensus 4 ~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~ 61 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETD 61 (94)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTC
T ss_pred CCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCC
Confidence 3579999999999999999999999999999999999999999999999999998753
No 16
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=99.72 E-value=4.4e-19 Score=131.46 Aligned_cols=66 Identities=39% Similarity=0.679 Sum_probs=0.0
Q ss_pred CCcCCCCC-CCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeeccee
Q 034926 9 QEEDKKPN-DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLAW 75 (78)
Q Consensus 9 ~~~~~kp~-~~~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~~ 75 (78)
.+++.+|+ +++++|+|||++ +|.+++|+||++|||+|||++||+++|++++++||+|||+||.+..
T Consensus 17 ~~~~~~~~~~~~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~ 83 (389)
T 4da1_A 17 AKPEVKPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQ 83 (389)
T ss_dssp --------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCC
Confidence 33445565 356899999998 8899999999999999999999999999999999999999998653
No 17
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=99.70 E-value=1.3e-18 Score=130.69 Aligned_cols=58 Identities=41% Similarity=0.696 Sum_probs=0.0
Q ss_pred CCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeeccee
Q 034926 17 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLAW 75 (78)
Q Consensus 17 ~~~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~~ 75 (78)
+++++|+|||++ +|++++|+||++|+|+|||+|||++.|++++++||+|||+||.+..
T Consensus 17 ~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~ 74 (360)
T 3ix6_A 17 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQ 74 (360)
T ss_dssp -----------------------------------------------------------
T ss_pred CCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCC
Confidence 357899999998 6899999999999999999999999999999999999999998653
No 18
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=99.55 E-value=1.1e-14 Score=89.85 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=51.3
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCC-eEEEEECCEeeccee
Q 034926 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELN-SIAFLYVHISAFLAW 75 (78)
Q Consensus 21 ~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~-s~rFlfdG~rI~~~~ 75 (78)
-|++-+++.....++|+|++++++.+||+|||.++|++++ ++||+|||.||.+..
T Consensus 9 ~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~ 64 (82)
T 3goe_A 9 LITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPND 64 (82)
T ss_dssp EEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTS
T ss_pred HHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccC
Confidence 5888888888888999999999999999999999999999 999999999998864
No 19
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.47 E-value=1.9e-13 Score=84.54 Aligned_cols=74 Identities=39% Similarity=0.600 Sum_probs=53.3
Q ss_pred CCCCCCCCCCcCCCCCCCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecce
Q 034926 1 MSGVTNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLA 74 (78)
Q Consensus 1 m~~~~~~~~~~~~kp~~~~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~ 74 (78)
||++++.+..++.++.+++..|+|+|+..+|..+.|+|.+++++..|+++||++.|++++..||+|+|++|...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~ 74 (97)
T 1wyw_B 1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADN 74 (97)
T ss_dssp ------------------CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTT
T ss_pred CCccccCccccccCCCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCC
Confidence 78766544444444445678999999999999999999999999999999999999999999999999998643
No 20
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.14 E-value=2.2e-10 Score=67.26 Aligned_cols=55 Identities=44% Similarity=0.683 Sum_probs=51.8
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecce
Q 034926 20 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLA 74 (78)
Q Consensus 20 ~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~ 74 (78)
++|+|+|++.+|..+.|+|.+++++..|+++||++.|++++..||+|+|++|...
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~ 56 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADN 56 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTT
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCC
Confidence 3699999999999999999999999999999999999999999999999998654
No 21
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=98.25 E-value=5.8e-06 Score=48.60 Aligned_cols=56 Identities=13% Similarity=0.231 Sum_probs=52.0
Q ss_pred CCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 18 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 18 ~~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
+...++|.|+..+|..+.+.|.+++....|....+++.|++++..|++|+|+.+.-
T Consensus 9 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d 64 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMND 64 (88)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCT
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCC
Confidence 35679999999999999999999999999999999999999999999999998864
No 22
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=98.18 E-value=5e-06 Score=50.74 Aligned_cols=58 Identities=10% Similarity=0.175 Sum_probs=50.7
Q ss_pred CCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecce
Q 034926 17 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLA 74 (78)
Q Consensus 17 ~~~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~ 74 (78)
..+..++|.|+..+|..+.+.|..++....|....+++.|++++..|++|+|+.+.-.
T Consensus 18 ~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~ 75 (98)
T 4hcn_B 18 FQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDG 75 (98)
T ss_dssp ----CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCC
Confidence 3456799999999999999999999999999999999999999999999999988643
No 23
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.16 E-value=8.3e-06 Score=50.53 Aligned_cols=55 Identities=9% Similarity=0.177 Sum_probs=50.7
Q ss_pred CCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeec
Q 034926 18 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAF 72 (78)
Q Consensus 18 ~~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~ 72 (78)
++..+.|.|+..+|..+.+.|..++....|....+++.|++.+..|++|.|+.+.
T Consensus 20 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~ 74 (106)
T 1ttn_A 20 SGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLT 74 (106)
T ss_dssp -CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECC
T ss_pred CCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECC
Confidence 4567999999888999999999999999999999999999999999999999874
No 24
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.15 E-value=6.2e-06 Score=48.07 Aligned_cols=54 Identities=11% Similarity=0.242 Sum_probs=49.7
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecce
Q 034926 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLA 74 (78)
Q Consensus 21 ~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~ 74 (78)
.++|.|+..+|..+.+.|.+++....|....+++.+++++..|++|+|+.+...
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~ 56 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 56 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTT
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCC
Confidence 588999999999999999999999999999999999999999999999988654
No 25
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.13 E-value=1.7e-05 Score=46.69 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=50.1
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 20 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 20 ~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
..++|.|+..+|..+.+.|.+++....|....+++.|++++..|++|+|+.+..
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d 59 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQD 59 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCS
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccC
Confidence 469999999889999999999999999999999999999999999999998853
No 26
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=98.12 E-value=1.3e-05 Score=46.60 Aligned_cols=55 Identities=11% Similarity=0.239 Sum_probs=50.5
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecce
Q 034926 20 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLA 74 (78)
Q Consensus 20 ~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~ 74 (78)
..++|.|+..+|..+.+.|.+++....|....+++.+++++..|++|+|+.+...
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~ 56 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 56 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCC
Confidence 3589999999999999999999999999999999999999999999999988643
No 27
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=98.12 E-value=1.9e-05 Score=47.25 Aligned_cols=57 Identities=7% Similarity=0.176 Sum_probs=52.3
Q ss_pred CCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecce
Q 034926 18 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLA 74 (78)
Q Consensus 18 ~~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~ 74 (78)
+...++|.|+..+|..+.+.|..++....|....+++.|++.+..|++|+|+.+.-.
T Consensus 14 ~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~ 70 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 70 (91)
T ss_dssp CCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCc
Confidence 356799999999999999999999999999999999999999999999999987643
No 28
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=98.08 E-value=1.7e-05 Score=45.00 Aligned_cols=52 Identities=13% Similarity=0.243 Sum_probs=47.8
Q ss_pred EEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 22 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 22 I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
++|.|+..+|..+.+.+.+++....|....+++.|++++..|++|+|+.+..
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d 52 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMND 52 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCC
Confidence 3678888889999999999999999999999999999999999999998854
No 29
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=98.06 E-value=2.9e-05 Score=44.94 Aligned_cols=54 Identities=7% Similarity=0.124 Sum_probs=50.4
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecce
Q 034926 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLA 74 (78)
Q Consensus 21 ~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~ 74 (78)
.+.|.|+..+|..+.+.|.+++....|....+++.|++++..|++|+|+.+.-.
T Consensus 4 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~ 57 (79)
T 3phx_B 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ 57 (79)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT
T ss_pred CEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCC
Confidence 589999999999999999999999999999999999999999999999987643
No 30
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=98.05 E-value=2.9e-05 Score=48.53 Aligned_cols=55 Identities=9% Similarity=0.184 Sum_probs=51.4
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecce
Q 034926 20 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLA 74 (78)
Q Consensus 20 ~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~ 74 (78)
..++|.|+..+|..+.+.|.+++....|....+++.|+++...|++|+|+.+.-.
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~ 88 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 88 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCC
Confidence 4799999999999999999999999999999999999999999999999988643
No 31
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.03 E-value=9.5e-05 Score=47.37 Aligned_cols=53 Identities=11% Similarity=0.207 Sum_probs=49.1
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeec
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAF 72 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~ 72 (78)
...++|.|+.. |..+.+.|..++....|....+++.|++.+..|++|+|+.|.
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~ 82 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILK 82 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEES
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcC
Confidence 35799999988 888999999999999999999999999999999999999884
No 32
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=98.03 E-value=4.4e-05 Score=45.28 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=50.7
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 20 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 20 ~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
..++|.|+..+|..+.+.|..++....|....+++.|++++..|++|+|+.+.-
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d 57 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQD 57 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCT
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCC
Confidence 479999999999999999999999999999999999999999999999998754
No 33
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=98.01 E-value=2.5e-05 Score=44.24 Aligned_cols=51 Identities=10% Similarity=0.191 Sum_probs=47.0
Q ss_pred EEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 23 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 23 ~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
.|.|+..+|..+.+.+.+++....|....+++.|++++..|++|+|+.+..
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d 52 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 52 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCC
Confidence 577888889999999999999999999999999999999999999998854
No 34
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.95 E-value=5.5e-05 Score=43.57 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=49.7
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 20 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 20 ~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
..++|.|+..+|..+.+.+..++....|....+++.|++++..|++|+|+.+..
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d 59 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALAD 59 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCT
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCC
Confidence 468899998889988999999999999999999999999999999999998853
No 35
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=97.91 E-value=4.6e-05 Score=45.44 Aligned_cols=52 Identities=8% Similarity=0.155 Sum_probs=48.8
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeec
Q 034926 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAF 72 (78)
Q Consensus 21 ~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~ 72 (78)
.++|.|+..+|..+.+.|.+++....|....+++.|++++..|++|+|+.+.
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~ 55 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE 55 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCC
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECC
Confidence 5889999888999999999999999999999999999999999999998874
No 36
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=97.91 E-value=4.5e-05 Score=45.62 Aligned_cols=53 Identities=9% Similarity=0.203 Sum_probs=48.4
Q ss_pred EEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecce
Q 034926 22 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLA 74 (78)
Q Consensus 22 I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~ 74 (78)
++|.|+..+|..+.+.|..++....|....+++.|++++..|++|+|+.+...
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~ 54 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 54 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCC
Confidence 56788888899999999999999999999999999999999999999988643
No 37
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=97.87 E-value=6.8e-05 Score=42.78 Aligned_cols=51 Identities=8% Similarity=0.136 Sum_probs=47.0
Q ss_pred EEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 22 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 22 I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
++|.|+. +|....+.+..++....|....+++.|++++..|++|+|+.+.-
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d 55 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKD 55 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCC
Confidence 7888888 88888999999999999999999999999999999999998753
No 38
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=97.87 E-value=7.3e-05 Score=46.54 Aligned_cols=54 Identities=9% Similarity=0.184 Sum_probs=50.5
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 20 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 20 ~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
..++|+|+..+|..+.+.|..++....|....+++.|++++..|++|+|+.+.-
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D 87 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 87 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCS
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCC
Confidence 479999999899999999999999999999999999999999999999998854
No 39
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=97.82 E-value=7.5e-05 Score=45.15 Aligned_cols=51 Identities=10% Similarity=0.191 Sum_probs=46.9
Q ss_pred EEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 23 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 23 ~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
+|+|+..+|..+.+.|..++....|....+++.|++++..|++|+|+.+..
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D 52 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 52 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCT
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCC
Confidence 577888889989999999999999999999999999999999999998854
No 40
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.79 E-value=0.00017 Score=43.31 Aligned_cols=53 Identities=9% Similarity=0.143 Sum_probs=49.2
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeec
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAF 72 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~ 72 (78)
...|+|.|+.. |..+.+.|..++....|.+..+++.|++++..|++|.|+.+.
T Consensus 15 ~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~ 67 (96)
T 1wx8_A 15 SRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILR 67 (96)
T ss_dssp SCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECC
T ss_pred CCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECC
Confidence 35799999987 889999999999999999999999999999999999999874
No 41
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=97.79 E-value=0.00017 Score=42.46 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=50.9
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
...++|.|+..+|....+.|.+++....|....+++.|++++..|++|.|+.+.-
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D 69 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQD 69 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCT
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCC
Confidence 3579999999999999999999999999999999999999999999999998754
No 42
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.74 E-value=0.00027 Score=43.40 Aligned_cols=54 Identities=11% Similarity=0.198 Sum_probs=48.7
Q ss_pred CCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeec
Q 034926 18 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAF 72 (78)
Q Consensus 18 ~~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~ 72 (78)
....++|+|+...|. ..+.|..++....|....+++.|++.+..|++|+|+.|.
T Consensus 14 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~ 67 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILK 67 (106)
T ss_dssp CSSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECC
T ss_pred CCceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC
Confidence 356799999988775 689999999999999999999999999999999999874
No 43
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=97.72 E-value=0.00016 Score=41.54 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=47.8
Q ss_pred cEEEEEEccCCCEE-EEE-EeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 21 HINLKVKGQDGNEV-FFR-IKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 21 ~I~lkV~~qdg~~v-~Fk-IK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
.+.|.|+..+|..+ .+. |.+++....|....+++.|++++..|++|+|+.+..
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d 56 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMED 56 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCC
Confidence 47788888888886 788 999999999999999999999999999999998853
No 44
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=97.72 E-value=0.00013 Score=47.97 Aligned_cols=60 Identities=10% Similarity=0.201 Sum_probs=51.3
Q ss_pred CCCCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecce
Q 034926 15 PNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLA 74 (78)
Q Consensus 15 p~~~~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~ 74 (78)
|..+...+.|.|+..+|..+.+.|..++....|....+++.|++++..|++|+|+.+...
T Consensus 14 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~ 73 (172)
T 3u30_A 14 LVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 73 (172)
T ss_dssp -----CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT
T ss_pred CCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCcccccc
Confidence 333456799999999999999999999999999999999999999999999999887653
No 45
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.68 E-value=0.00037 Score=41.01 Aligned_cols=54 Identities=13% Similarity=0.154 Sum_probs=48.9
Q ss_pred CcEEEEEEccCC-CEEEE-EEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 20 AHINLKVKGQDG-NEVFF-RIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 20 ~~I~lkV~~qdg-~~v~F-kIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
..+.|.|+..+| ..+.+ .|.+++....|....+++.|++++..|++|+|+.+..
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d 61 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLEN 61 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCS
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCC
Confidence 468999998888 68899 5999999999999999999999999999999998853
No 46
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=97.64 E-value=0.00015 Score=43.20 Aligned_cols=53 Identities=11% Similarity=0.178 Sum_probs=48.2
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 21 ~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
-+.|.|+..+|..+.+.+.+++....|.+..+++.|++++..|++|+|+.+..
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D 61 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLED 61 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCT
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCC
Confidence 36778888899999999999999999999999999999999999999998853
No 47
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=97.60 E-value=0.00031 Score=44.44 Aligned_cols=53 Identities=9% Similarity=0.191 Sum_probs=48.6
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 21 ~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
.+.|.|...+|....+.+.+++....|.+..+++.|++++..|+.|+|+.+..
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d 128 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCC
Confidence 47788888889999999999999999999999999999999999999998743
No 48
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=97.60 E-value=0.00017 Score=43.58 Aligned_cols=52 Identities=8% Similarity=0.067 Sum_probs=46.2
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 20 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 20 ~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
..++|.|+. |..+.+.|.+++....|....+++.|++++..|++|+|+.+..
T Consensus 18 ~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D 69 (93)
T 2l7r_A 18 GSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLED 69 (93)
T ss_dssp --CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCT
T ss_pred CcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCC
Confidence 358888887 7888999999999999999999999999999999999998853
No 49
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=97.60 E-value=0.0004 Score=42.57 Aligned_cols=53 Identities=11% Similarity=0.196 Sum_probs=48.3
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeec
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAF 72 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~ 72 (78)
...++|.|+...|. ..+.|..++....|.+..+++.|++++..|++|+|+.+.
T Consensus 20 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~ 72 (100)
T 1yqb_A 20 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILK 72 (100)
T ss_dssp TTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC
T ss_pred CCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC
Confidence 45799999988875 689999999999999999999999999999999999874
No 50
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=97.56 E-value=0.0005 Score=42.13 Aligned_cols=54 Identities=7% Similarity=0.146 Sum_probs=48.9
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
...++|.|+.. |..+.+.|..++....|....+++.|++++..|++|.|+.+.-
T Consensus 23 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D 76 (101)
T 2klc_A 23 PKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKD 76 (101)
T ss_dssp CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECT
T ss_pred CCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCC
Confidence 35688999887 8888999999999999999999999999999999999998843
No 51
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=0.00093 Score=43.30 Aligned_cols=55 Identities=18% Similarity=0.138 Sum_probs=49.5
Q ss_pred CcEEEEEE-ccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecce
Q 034926 20 AHINLKVK-GQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLA 74 (78)
Q Consensus 20 ~~I~lkV~-~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~ 74 (78)
..|+++|+ ..+|..+.+.+..++.++.|.+..+.+.+++.+.+|+.|+|+-+.-.
T Consensus 14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~ 69 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNN 69 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSS
T ss_pred ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCc
Confidence 45889987 66788899999999999999999999999999999999999988643
No 52
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.53 E-value=0.00021 Score=44.47 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=50.8
Q ss_pred EEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeeccee
Q 034926 22 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLAW 75 (78)
Q Consensus 22 I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~~ 75 (78)
..+.|...+|+...+||.+++.|..+.+.-|+++|++.+...+.|+++.|.+|-
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSl 63 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSL 63 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSC
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccc
Confidence 478889999999999999999999999999999999999999999999998874
No 53
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=97.53 E-value=0.00029 Score=41.95 Aligned_cols=53 Identities=13% Similarity=0.238 Sum_probs=47.8
Q ss_pred EEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecce
Q 034926 22 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLA 74 (78)
Q Consensus 22 I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~ 74 (78)
+.|.|+..+|..+.+.|.+++....|....+++.|++++..|++|+|+.+.-.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~ 53 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE 53 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCC
Confidence 35777878899999999999999999999999999999999999999988643
No 54
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=97.51 E-value=0.00075 Score=39.13 Aligned_cols=52 Identities=10% Similarity=0.141 Sum_probs=48.0
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhh---cCCCCCeEEEEECCEeec
Q 034926 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDR---QSVELNSIAFLYVHISAF 72 (78)
Q Consensus 21 ~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r---~gl~~~s~rFlfdG~rI~ 72 (78)
.++|.|+..+|..+.+.|..++....|....+++ .|++++..|++|.|+.+.
T Consensus 5 ~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~ 59 (85)
T 2wyq_A 5 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILS 59 (85)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECC
T ss_pred eEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECc
Confidence 5888998888999999999999999999999998 789999999999999874
No 55
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.37 E-value=0.00087 Score=40.34 Aligned_cols=50 Identities=10% Similarity=0.108 Sum_probs=45.5
Q ss_pred EEEEEccCCCEEEEEEeCCchHHHHHHHHHhh---cCCCCCeEEEEECCEeec
Q 034926 23 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDR---QSVELNSIAFLYVHISAF 72 (78)
Q Consensus 23 ~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r---~gl~~~s~rFlfdG~rI~ 72 (78)
+|.|+..+|..+.+.|..++....|....+++ .|++++..|++|+|+.+.
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~ 54 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILN 54 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECC
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECC
Confidence 57777778999999999999999999999998 789999999999999874
No 56
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=97.36 E-value=0.0012 Score=41.10 Aligned_cols=54 Identities=11% Similarity=0.009 Sum_probs=50.6
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 20 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 20 ~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
.-|.|.|.+..|..+.+++.++.....|.+.-+++.|++++..|+.|.|+.+.-
T Consensus 20 ~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD 73 (93)
T 3plu_A 20 HMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKD 73 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCT
T ss_pred ceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccC
Confidence 479999999999999999999999999999999999999999999999987653
No 57
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=97.35 E-value=0.0012 Score=42.50 Aligned_cols=55 Identities=7% Similarity=0.126 Sum_probs=50.3
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
...+.|.|...+|..+.+.|.+++....|....+++.|++++..|+.|+|+.+.-
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d 133 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLED 133 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCT
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCC
Confidence 3458888999999999999999999999999999999999999999999988764
No 58
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.00046 Score=42.63 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=46.9
Q ss_pred EEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 22 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 22 I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
++|.|+..+|..+.+.|..++....|....+++.|++++..|++|.|+.+.-
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D 53 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQD 53 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCT
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCC
Confidence 4677888889999999999999999999999999999999999999998754
No 59
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.27 E-value=0.0024 Score=39.97 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=49.9
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeec
Q 034926 20 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAF 72 (78)
Q Consensus 20 ~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~ 72 (78)
.-|+|.|+...|..+.+.|.++.....|.+.-+++.|++++..|+.|.|+.+.
T Consensus 27 ~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~ 79 (100)
T 1uh6_A 27 TMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFK 79 (100)
T ss_dssp CEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECC
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECC
Confidence 45999999988999999999999999999999999999999999999999885
No 60
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=97.26 E-value=0.0018 Score=38.39 Aligned_cols=53 Identities=11% Similarity=0.160 Sum_probs=49.3
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEe-ec
Q 034926 20 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHIS-AF 72 (78)
Q Consensus 20 ~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~r-I~ 72 (78)
.+.+|.|..-.|....+.|.+++....|....+++.|++++..|++|.|+. +.
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~ 62 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILR 62 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecC
Confidence 478899999899999999999999999999999999999999999999987 63
No 61
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=97.25 E-value=0.001 Score=41.97 Aligned_cols=51 Identities=10% Similarity=0.191 Sum_probs=46.4
Q ss_pred EEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 23 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 23 ~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
.|.|+..+|..+.+.|.+++....|....+++.|++++..|++|.|+.+..
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d 52 (152)
T 3b08_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 52 (152)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcC
Confidence 567777788899999999999999999999999999999999999998753
No 62
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=96.30 E-value=5e-05 Score=43.46 Aligned_cols=51 Identities=10% Similarity=0.086 Sum_probs=45.7
Q ss_pred EEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 23 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 23 ~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
.|.|+..+|..+.+.+.+++....|....+++.|++++..|++|+|+.+..
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d 52 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPN 52 (76)
Confidence 466777788888899999999999999999999999999999999988743
No 63
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=97.20 E-value=0.0032 Score=38.04 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=47.9
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeec
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAF 72 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~ 72 (78)
...++|.|+...| ...+.|.+++....|...-+++.|++++..|++|.|+.+.
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~ 65 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELA 65 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEEC
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECC
Confidence 3468999998777 7789999999999999999999999999999999998874
No 64
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.12 E-value=0.0016 Score=38.97 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=45.8
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 20 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 20 ~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
..|+|.|+..+|..+.+.|.+++....|....+++. ++..|++|.|+.|.-
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D 56 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQD 56 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccC
Confidence 469999998889888999999999999999999887 889999999998853
No 65
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.0029 Score=39.52 Aligned_cols=51 Identities=8% Similarity=0.204 Sum_probs=46.8
Q ss_pred EEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeec
Q 034926 22 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAF 72 (78)
Q Consensus 22 I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~ 72 (78)
..|.|...+|..+.+.|.+++....|....+++.|++++..|++|+|+.+.
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~ 60 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLE 60 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECC
Confidence 566777778999999999999999999999999999999999999999874
No 66
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=96.99 E-value=0.0025 Score=42.47 Aligned_cols=51 Identities=10% Similarity=0.199 Sum_probs=47.3
Q ss_pred EEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 23 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 23 ~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
.|.|+..+|..+.+.|.+++....|....+++.|++++..|++|.|+.+.-
T Consensus 2 qI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D 52 (169)
T 3l0w_B 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLED 52 (169)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCT
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccC
Confidence 577888899999999999999999999999999999999999999998754
No 67
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.00035 Score=42.97 Aligned_cols=54 Identities=7% Similarity=0.130 Sum_probs=46.9
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
+-.|+|+|+. .|..+.+.|..++....|....+++.|++++..|++|.|+.+.-
T Consensus 26 ~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D 79 (101)
T 3m63_B 26 AMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKD 79 (101)
T ss_dssp ---CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCT
T ss_pred CcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCC
Confidence 4568888887 78888899999999999999999999999999999999998754
No 68
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=96.88 E-value=0.0053 Score=38.11 Aligned_cols=53 Identities=13% Similarity=0.203 Sum_probs=46.4
Q ss_pred CcEEEEEEccC----------CCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeec
Q 034926 20 AHINLKVKGQD----------GNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAF 72 (78)
Q Consensus 20 ~~I~lkV~~qd----------g~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~ 72 (78)
..|+|.|..++ |..+.+.|..++....|....+++.|++++..|++|.|+.+.
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~ 86 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIK 86 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEEC
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECC
Confidence 46777777653 567889999999999999999999999999999999998874
No 69
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=96.79 E-value=0.0036 Score=42.90 Aligned_cols=53 Identities=9% Similarity=0.159 Sum_probs=49.9
Q ss_pred EEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecce
Q 034926 22 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLA 74 (78)
Q Consensus 22 I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~ 74 (78)
+.|.|+..+|..+.+.|.+++....|....+++.|++++..|++|.|+.+.-.
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~ 158 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 158 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTT
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCC
Confidence 89999999999999999999999999999999999999999999999988643
No 70
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.73 E-value=0.0028 Score=38.34 Aligned_cols=56 Identities=7% Similarity=0.032 Sum_probs=48.4
Q ss_pred CCCCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEee
Q 034926 15 PNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISA 71 (78)
Q Consensus 15 p~~~~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI 71 (78)
+......|+|+|+. .|..+.+.|..++.+..|...-+++.|++++..|++|.|+.+
T Consensus 11 ~~~~~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L 66 (95)
T 1v86_A 11 GGVGKELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP 66 (95)
T ss_dssp CCCCCCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC
T ss_pred CCCCCceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC
Confidence 33345679999984 577788999999999999999999999999999999999876
No 71
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=96.63 E-value=0.011 Score=36.40 Aligned_cols=55 Identities=11% Similarity=0.158 Sum_probs=45.7
Q ss_pred CCcEEEEEEccCCCEEEE--EEeCCchHHHHHHHH-HhhcCCCCCeEEEEECCEeecc
Q 034926 19 SAHINLKVKGQDGNEVFF--RIKRSTQLKKLMNAY-CDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~F--kIK~~t~l~KLm~aY-c~r~gl~~~s~rFlfdG~rI~~ 73 (78)
...++|.|+...|....+ .+.++.....|.... +++.|++++..|++|.|+.+.-
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D 74 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHD 74 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECT
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcC
Confidence 346888888888886555 555999999999998 7788999999999999998754
No 72
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.61 E-value=0.0081 Score=35.69 Aligned_cols=53 Identities=11% Similarity=0.093 Sum_probs=45.3
Q ss_pred CcEEEEEEccCCC--EEEEEEeCCchHHHHHHHHHhhc--CCCCCeEEEEECCEeec
Q 034926 20 AHINLKVKGQDGN--EVFFRIKRSTQLKKLMNAYCDRQ--SVELNSIAFLYVHISAF 72 (78)
Q Consensus 20 ~~I~lkV~~qdg~--~v~FkIK~~t~l~KLm~aYc~r~--gl~~~s~rFlfdG~rI~ 72 (78)
..|+|.|+..+|. .+.+.+..++....|...-+++. |++++..|++|.|+.+.
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~ 62 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLL 62 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECC
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECc
Confidence 3588888887777 55666669999999999999988 99999999999999874
No 73
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.0057 Score=36.89 Aligned_cols=52 Identities=10% Similarity=0.137 Sum_probs=45.6
Q ss_pred EEEEEEccCCCEEEEEEe--CCchHHHHHHHH-HhhcCCCCCeEEEEECCEeecc
Q 034926 22 INLKVKGQDGNEVFFRIK--RSTQLKKLMNAY-CDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 22 I~lkV~~qdg~~v~FkIK--~~t~l~KLm~aY-c~r~gl~~~s~rFlfdG~rI~~ 73 (78)
+.|.|+...|....+.|. +++....|...- +++.|++++..|++|.|+.+.-
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D 56 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHD 56 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCT
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcC
Confidence 567888888887777766 999999999998 9999999999999999998754
No 74
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.52 E-value=0.019 Score=33.86 Aligned_cols=53 Identities=8% Similarity=0.050 Sum_probs=46.5
Q ss_pred CcEEEEEEccCCCEEEEEEeCC-----chHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 20 AHINLKVKGQDGNEVFFRIKRS-----TQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 20 ~~I~lkV~~qdg~~v~FkIK~~-----t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
..|+|.|+. .|....+.+..+ +....|...-+++.|++++..|++|.|+.+.-
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D 63 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKE 63 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECC
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCC
Confidence 368999987 477778899985 99999999999999999999999999998753
No 75
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=96.46 E-value=0.0056 Score=37.71 Aligned_cols=53 Identities=11% Similarity=0.051 Sum_probs=48.2
Q ss_pred CcEEEEEEcc---CCCEEEEEEeC-CchHHHHHHHHHhhcCCCCCeEEEEECCEeec
Q 034926 20 AHINLKVKGQ---DGNEVFFRIKR-STQLKKLMNAYCDRQSVELNSIAFLYVHISAF 72 (78)
Q Consensus 20 ~~I~lkV~~q---dg~~v~FkIK~-~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~ 72 (78)
..|+|.|+.. +|..+.+.|.+ ++....|....++..|++++..|++|.|..+.
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~ 82 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLK 82 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCC
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECC
Confidence 4699999987 78888999998 99999999999999999999999999998664
No 76
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=96.39 E-value=0.00053 Score=43.58 Aligned_cols=51 Identities=10% Similarity=0.199 Sum_probs=0.0
Q ss_pred EEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 23 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 23 ~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
.|.|...+|..+.+.|.+++....|....+++.|++++..|++|+|..+.-
T Consensus 2 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D 52 (128)
T 3u5e_m 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLED 52 (128)
T ss_dssp ---------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCC
Confidence 567777788888999999999999999999999999999999999988754
No 77
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.25 E-value=0.011 Score=36.94 Aligned_cols=53 Identities=9% Similarity=0.068 Sum_probs=45.5
Q ss_pred cEEEEEEccC--CCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 21 HINLKVKGQD--GNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 21 ~I~lkV~~qd--g~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
.|+|++.+.. +..+.+.|.++.....|...-+++.|++++..|+.|.|+.+.-
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D 71 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQL 71 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCT
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCC
Confidence 4666665533 6788999999999999999999999999999999999998753
No 78
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.20 E-value=0.014 Score=35.81 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=42.2
Q ss_pred cEEEEEEccCC---CEEEEEE--------eC-CchHHHHHHHHHhhc--CCCCCe-EEEEECCEeecc
Q 034926 21 HINLKVKGQDG---NEVFFRI--------KR-STQLKKLMNAYCDRQ--SVELNS-IAFLYVHISAFL 73 (78)
Q Consensus 21 ~I~lkV~~qdg---~~v~FkI--------K~-~t~l~KLm~aYc~r~--gl~~~s-~rFlfdG~rI~~ 73 (78)
.|+|.|+..++ ....+.| .+ ++....|....+++. |++++. .|++|.|+.+.-
T Consensus 12 ~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D 79 (107)
T 1x1m_A 12 DWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKD 79 (107)
T ss_dssp SCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCT
T ss_pred ceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCC
Confidence 36666666566 5666774 44 499999999999999 999999 999999998753
No 79
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.17 E-value=0.04 Score=34.98 Aligned_cols=55 Identities=15% Similarity=0.138 Sum_probs=47.8
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHh------hcCC--CCCeEEEEECCEeecc
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCD------RQSV--ELNSIAFLYVHISAFL 73 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~------r~gl--~~~s~rFlfdG~rI~~ 73 (78)
...|+|+|+.-.|..+.|.|..++....|...-++ +-|. +++..|++|.|+.|.-
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD 76 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECS
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCC
Confidence 45799999988899999999999999999999998 4454 6899999999998753
No 80
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.11 E-value=0.032 Score=33.83 Aligned_cols=52 Identities=8% Similarity=0.011 Sum_probs=44.0
Q ss_pred cEEEEEEccCC----CEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeec
Q 034926 21 HINLKVKGQDG----NEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAF 72 (78)
Q Consensus 21 ~I~lkV~~qdg----~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~ 72 (78)
.+.|.|....+ ..+.+.|..++....|...-+++.|++++..|++|.|+.+.
T Consensus 7 ~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~ 62 (102)
T 1v5o_A 7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLT 62 (102)
T ss_dssp CEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEEC
T ss_pred eEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECC
Confidence 46666665433 57789999999999999999999999999999999998874
No 81
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.07 E-value=0.011 Score=36.95 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=47.5
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCC---------------CeEEEEECCEeec
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEL---------------NSIAFLYVHISAF 72 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~---------------~s~rFlfdG~rI~ 72 (78)
+..++|.|+.-+|..+.+.|.+++....|..+-.++.++++ ..+|+.|+|+.|.
T Consensus 5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~ 73 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLT 73 (105)
T ss_dssp CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEEC
T ss_pred CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCcc
Confidence 34699999989999999999999999999999999888765 5789999999884
No 82
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=96.05 E-value=0.02 Score=37.38 Aligned_cols=53 Identities=9% Similarity=0.191 Sum_probs=47.7
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 21 ~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
.+.|.|...+|..+.+.|.++.....|...-+++.|++++..|+.|+|+.+..
T Consensus 96 g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D 148 (172)
T 3u30_A 96 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 148 (172)
T ss_dssp CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCT
T ss_pred cccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCC
Confidence 46667777889999999999999999999999999999999999999998754
No 83
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.98 E-value=0.02 Score=34.65 Aligned_cols=52 Identities=6% Similarity=-0.077 Sum_probs=45.9
Q ss_pred CcEEEEEEccCCCEE-EEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeec
Q 034926 20 AHINLKVKGQDGNEV-FFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAF 72 (78)
Q Consensus 20 ~~I~lkV~~qdg~~v-~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~ 72 (78)
..|+|+|+. .|... .+.|..++.+..|...-+++.|++++..|++|.|+.+.
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~ 58 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLK 58 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECC
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCC
Confidence 468888885 56676 49999999999999999999999999999999998775
No 84
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=95.97 E-value=0.0012 Score=43.80 Aligned_cols=52 Identities=10% Similarity=0.199 Sum_probs=0.0
Q ss_pred EEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecce
Q 034926 23 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLA 74 (78)
Q Consensus 23 ~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~ 74 (78)
.|.|...+|..+.+.|.+++....|....+++.|++++..|++|+|..|.-.
T Consensus 2 qI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~ 53 (152)
T 3u5c_f 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDG 53 (152)
T ss_dssp ----------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEcccc
Confidence 5667777888889999999999999999999999999999999999987543
No 85
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=95.91 E-value=0.023 Score=36.35 Aligned_cols=52 Identities=17% Similarity=0.114 Sum_probs=46.9
Q ss_pred EEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEE-E-CCEeecc
Q 034926 22 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFL-Y-VHISAFL 73 (78)
Q Consensus 22 I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFl-f-dG~rI~~ 73 (78)
++|.|+..+|..+.+.|.+++....|...-+++.|+++..-|+. | +|..+.-
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d 56 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQD 56 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCT
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCC
Confidence 56778877899999999999999999999999999999999999 9 6987754
No 86
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=95.84 E-value=0.036 Score=35.58 Aligned_cols=55 Identities=15% Similarity=0.138 Sum_probs=48.1
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHh------hcCC--CCCeEEEEECCEeecc
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCD------RQSV--ELNSIAFLYVHISAFL 73 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~------r~gl--~~~s~rFlfdG~rI~~ 73 (78)
...|+|+|+..+|....|.|.+++....|...-++ +-|. +++..|++|.|+.+.-
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD 77 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 77 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEES
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCC
Confidence 45699999988999999999999999999999998 5566 4899999999998753
No 87
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=95.82 E-value=0.034 Score=32.68 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=43.1
Q ss_pred EEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 22 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 22 I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
+.+.+. -.|....+.+..++....|....+++.|++++..|++|+|+.+.-
T Consensus 13 ~~~~~~-~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D 63 (85)
T 2kd0_A 13 IKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVE 63 (85)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCT
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCC
Confidence 444333 367788899999999999999999999999999999999998743
No 88
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=95.73 E-value=0.021 Score=33.90 Aligned_cols=51 Identities=16% Similarity=0.045 Sum_probs=44.3
Q ss_pred cEEEEEEccCCCEEEE-EEeCCchHHHHHHHHHhhcCCCCCeEEEE---ECCEeec
Q 034926 21 HINLKVKGQDGNEVFF-RIKRSTQLKKLMNAYCDRQSVELNSIAFL---YVHISAF 72 (78)
Q Consensus 21 ~I~lkV~~qdg~~v~F-kIK~~t~l~KLm~aYc~r~gl~~~s~rFl---fdG~rI~ 72 (78)
.|+|+|+. .|..+.+ .|..++....|...-+++.|++++..|++ |.|..+.
T Consensus 7 ~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~ 61 (90)
T 1v5t_A 7 GLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAE 61 (90)
T ss_dssp SCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECC
T ss_pred eEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcC
Confidence 46777775 5777778 88999999999999999999999999999 9998765
No 89
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=95.45 E-value=0.12 Score=31.36 Aligned_cols=52 Identities=8% Similarity=0.070 Sum_probs=44.8
Q ss_pred CCcEEEEEEccCCC--EEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEEC--CEe
Q 034926 19 SAHINLKVKGQDGN--EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYV--HIS 70 (78)
Q Consensus 19 ~~~I~lkV~~qdg~--~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfd--G~r 70 (78)
...|+|.|....+. .+.++|.++.....|...-.++.|++++..|+.|. |..
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~ 68 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTC 68 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcc
Confidence 45788888876554 67899999999999999999999999999999996 553
No 90
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=95.36 E-value=0.083 Score=34.14 Aligned_cols=54 Identities=9% Similarity=0.142 Sum_probs=45.4
Q ss_pred CcEEEEEEccCCCEE-EEEEeCCchHHHHHHHHH-----hhcCCCC--CeEEEEECCEeecc
Q 034926 20 AHINLKVKGQDGNEV-FFRIKRSTQLKKLMNAYC-----DRQSVEL--NSIAFLYVHISAFL 73 (78)
Q Consensus 20 ~~I~lkV~~qdg~~v-~FkIK~~t~l~KLm~aYc-----~r~gl~~--~s~rFlfdG~rI~~ 73 (78)
+.+.|+|+..+|..+ .+.+.+++....|...-. ++-|.++ +..|+.|.|+.+.-
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD 76 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 76 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCT
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcC
Confidence 589999999999998 699999999988888884 4556665 79999999998753
No 91
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=95.29 E-value=0.069 Score=39.03 Aligned_cols=54 Identities=9% Similarity=0.232 Sum_probs=49.7
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeec
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAF 72 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~ 72 (78)
...++|.|+..+|..+.+.|..++....|...-+++.|++++..|++|.|+.|.
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~ 284 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 284 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecC
Confidence 356889999888999999999999999999999999999999999999999874
No 92
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=95.15 E-value=0.074 Score=32.57 Aligned_cols=54 Identities=11% Similarity=0.007 Sum_probs=44.6
Q ss_pred CcEEEEEEccCCC--EEEEEEeCCchHHHHHHHHHhhc-CCC-CCeEEEEECCEeecc
Q 034926 20 AHINLKVKGQDGN--EVFFRIKRSTQLKKLMNAYCDRQ-SVE-LNSIAFLYVHISAFL 73 (78)
Q Consensus 20 ~~I~lkV~~qdg~--~v~FkIK~~t~l~KLm~aYc~r~-gl~-~~s~rFlfdG~rI~~ 73 (78)
..|+|+|+..+|. .+.+.+.+++....|...-+++. |.+ ++..|+.|.|+.+.-
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D 79 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPD 79 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECT
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCC
Confidence 4699999988877 67888899999999999998864 555 599999999998753
No 93
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=95.03 E-value=0.11 Score=33.20 Aligned_cols=50 Identities=10% Similarity=-0.004 Sum_probs=43.5
Q ss_pred EEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeec
Q 034926 22 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAF 72 (78)
Q Consensus 22 I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~ 72 (78)
|.|+|+... ..+.+.|..+.....|...-+++.|++++.-|++|+|+.+.
T Consensus 3 mfl~ir~~k-tti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~Le 52 (118)
T 2fnj_B 3 VFLMIRRHK-TTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLD 52 (118)
T ss_dssp EEEEEEEBT-EEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECC
T ss_pred EEEEEecCC-EEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECC
Confidence 667777633 45788999999999999999999999999999999999775
No 94
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=94.40 E-value=0.18 Score=30.72 Aligned_cols=51 Identities=10% Similarity=0.098 Sum_probs=43.9
Q ss_pred CCcEEEEEEccCC--CEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCE
Q 034926 19 SAHINLKVKGQDG--NEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHI 69 (78)
Q Consensus 19 ~~~I~lkV~~qdg--~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~ 69 (78)
...|+|.|..... ..+.++|.++.....|...=.++.|++++..|+.|.|.
T Consensus 12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~ 64 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDD 64 (97)
T ss_dssp CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECS
T ss_pred CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecC
Confidence 4578888886444 36789999999999999999999999999999999874
No 95
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=94.13 E-value=0.059 Score=40.13 Aligned_cols=53 Identities=11% Similarity=0.172 Sum_probs=46.1
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHh---hcCCCCCeEEEEECCEeec
Q 034926 20 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCD---RQSVELNSIAFLYVHISAF 72 (78)
Q Consensus 20 ~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~---r~gl~~~s~rFlfdG~rI~ 72 (78)
..+.|.|+...|..+.+.|..++....|...-++ +.|++.+..|++|.|+.|.
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~ 61 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILS 61 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEEC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecC
Confidence 3477777777888889999999999999999998 5679999999999999874
No 96
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=94.09 E-value=0.21 Score=31.22 Aligned_cols=49 Identities=8% Similarity=0.064 Sum_probs=42.7
Q ss_pred CcEEEEEEccCCC-EEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECC
Q 034926 20 AHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVH 68 (78)
Q Consensus 20 ~~I~lkV~~qdg~-~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG 68 (78)
..|+|.|....+. ...++|.++.....|...-+++.|++++..|+.|.|
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g 54 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFD 54 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEEC
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEec
Confidence 3688888875553 468899999999999999999999999999999976
No 97
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=94.06 E-value=0.24 Score=30.97 Aligned_cols=51 Identities=6% Similarity=0.029 Sum_probs=42.9
Q ss_pred cEEEEEEccCC--CEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEee
Q 034926 21 HINLKVKGQDG--NEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISA 71 (78)
Q Consensus 21 ~I~lkV~~qdg--~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI 71 (78)
.+.+.|.|..+ ..+.+.|.+++....|.+...++.|+++..-|+.|.|+-+
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll 76 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLA 76 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEE
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEc
Confidence 45566666654 5789999999999999999999999999999988877743
No 98
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=94.05 E-value=0.029 Score=32.93 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=39.7
Q ss_pred EEEEEccCCCEEEEE-EeCCchHHHHHHHHHhhcCCCCCeEEEEECC--Eee
Q 034926 23 NLKVKGQDGNEVFFR-IKRSTQLKKLMNAYCDRQSVELNSIAFLYVH--ISA 71 (78)
Q Consensus 23 ~lkV~~qdg~~v~Fk-IK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG--~rI 71 (78)
.|+|+..+|..+ +. +..++.+..|....+++.|++++..|++|.+ +.+
T Consensus 2 ~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l 52 (86)
T 2kzr_A 2 RVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECL 52 (86)
T ss_dssp CEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCC
T ss_pred EEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCccc
Confidence 578888888664 67 8899999999999999999998888888753 444
No 99
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=93.93 E-value=0.059 Score=33.04 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=44.2
Q ss_pred CcEEEEEEccCCCEEEEEEe-CCchHHHHHHHHHhhcCCCCCeEEEEECCE
Q 034926 20 AHINLKVKGQDGNEVFFRIK-RSTQLKKLMNAYCDRQSVELNSIAFLYVHI 69 (78)
Q Consensus 20 ~~I~lkV~~qdg~~v~FkIK-~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~ 69 (78)
..+.|+|+..+|.. .+.|. ++..+..|...-+++.|+++...|+.|+|.
T Consensus 6 ~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~ 55 (107)
T 1wf9_A 6 SGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRN 55 (107)
T ss_dssp CCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGG
T ss_pred CeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCc
Confidence 34889999999976 78899 999999999999999999999999988887
No 100
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=93.02 E-value=0.018 Score=39.69 Aligned_cols=51 Identities=14% Similarity=0.248 Sum_probs=0.0
Q ss_pred EEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 23 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 23 ~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
.|.|...+|..+.+.|.+++....|...-+++.|++++..|++|+|+.|.-
T Consensus 2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD 52 (189)
T 2xzm_9 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPN 52 (189)
T ss_dssp ---------------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCC
Confidence 455666678888899999999999999999999999999999999988754
No 101
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=92.90 E-value=0.18 Score=30.01 Aligned_cols=48 Identities=6% Similarity=-0.064 Sum_probs=41.8
Q ss_pred cEEEEEEccCCC-EEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECC
Q 034926 21 HINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVH 68 (78)
Q Consensus 21 ~I~lkV~~qdg~-~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG 68 (78)
.|+|.|...... ...+++.++.....|...-+++.|++++..|+.|.|
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~ 55 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYG 55 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEEC
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeC
Confidence 488888875443 468899999999999999999999999999999976
No 102
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=92.78 E-value=0.54 Score=30.06 Aligned_cols=51 Identities=10% Similarity=-0.037 Sum_probs=43.2
Q ss_pred EEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecc
Q 034926 22 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFL 73 (78)
Q Consensus 22 I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~ 73 (78)
+=|+|+. ....+.+.++++.....|...-.++.|++++.-|++|+|+.+.-
T Consensus 3 vFl~Ikr-~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD 53 (118)
T 4ajy_B 3 VFLMIRR-HKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDD 53 (118)
T ss_dssp EEEEEEE-BTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCT
T ss_pred eEEEEec-CCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCC
Confidence 3455554 44578889999999999999999999999999999999988753
No 103
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=92.59 E-value=0.38 Score=29.62 Aligned_cols=52 Identities=8% Similarity=0.005 Sum_probs=43.1
Q ss_pred EEEEEcc-CCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecce
Q 034926 23 NLKVKGQ-DGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLA 74 (78)
Q Consensus 23 ~lkV~~q-dg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~ 74 (78)
-|.|-+- .+..+.+-|.++..+..+.++-+++.|+++..-+++|.|+.+.+.
T Consensus 14 vvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~ 66 (94)
T 4efo_A 14 VIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLE 66 (94)
T ss_dssp EEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCC
T ss_pred eEEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccC
Confidence 3444443 456668999999999999999999999999999999999887643
No 104
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=92.48 E-value=0.13 Score=33.18 Aligned_cols=33 Identities=9% Similarity=0.289 Sum_probs=31.4
Q ss_pred EEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEE
Q 034926 34 VFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66 (78)
Q Consensus 34 v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlf 66 (78)
..|||.+++++..|....++..|++.+.+||+.
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 479999999999999999999999999999986
No 105
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=92.25 E-value=1 Score=27.68 Aligned_cols=46 Identities=9% Similarity=0.116 Sum_probs=35.5
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEE
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFL 65 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFl 65 (78)
...++|.|+-.||..+.-+...+.+++.|++ |++..+.....+++.
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~-fv~~~~~~~~~f~L~ 66 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLD-WMMKVGYHKSLYRLS 66 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHH-HHHHHTCCTTTEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHH-HHHhcCCCCCCeEEE
Confidence 3578999999999999888999999998887 554555555556654
No 106
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.18 E-value=0.58 Score=28.89 Aligned_cols=54 Identities=9% Similarity=0.165 Sum_probs=43.3
Q ss_pred CCCCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECC
Q 034926 15 PNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVH 68 (78)
Q Consensus 15 p~~~~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG 68 (78)
|..+..++.|-|--.-...-..+|.+..+|+.|+-+-|++..+++..+.|+=|-
T Consensus 4 ~~~PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~ 57 (91)
T 2daj_A 4 GSSGEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDY 57 (91)
T ss_dssp CSCCCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCS
T ss_pred CCCCccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCC
Confidence 333345677777655555568899999999999999999999999999988653
No 107
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.61 E-value=0.25 Score=29.29 Aligned_cols=52 Identities=10% Similarity=0.166 Sum_probs=43.4
Q ss_pred CcEEEEEEccCCCEE--EE-EEeCCchHHHHHHHHHh-hcCCCCCeEEEEEC--CEee
Q 034926 20 AHINLKVKGQDGNEV--FF-RIKRSTQLKKLMNAYCD-RQSVELNSIAFLYV--HISA 71 (78)
Q Consensus 20 ~~I~lkV~~qdg~~v--~F-kIK~~t~l~KLm~aYc~-r~gl~~~s~rFlfd--G~rI 71 (78)
..+.|.|....|.+. .+ .|.+++....|.+..++ +.|++++..|+.|. |..+
T Consensus 9 ~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L 66 (88)
T 2dzj_A 9 KHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSL 66 (88)
T ss_dssp CCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCC
T ss_pred EEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCc
Confidence 358889988877664 46 89999999999999999 47899999999876 7766
No 108
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=90.41 E-value=0.95 Score=27.27 Aligned_cols=44 Identities=14% Similarity=0.233 Sum_probs=40.2
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEE
Q 034926 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66 (78)
Q Consensus 21 ~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlf 66 (78)
.++|||.-+ ..|-.+|.++.++.-|.+.-|+|.+++.+.+.+.|
T Consensus 5 ~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsY 48 (83)
T 1oey_A 5 AYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSY 48 (83)
T ss_dssp CEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEE
T ss_pred cEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEe
Confidence 489999987 58899999999999999999999999888888887
No 109
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=90.33 E-value=1.9 Score=26.10 Aligned_cols=56 Identities=13% Similarity=0.126 Sum_probs=45.7
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCe-EEEEE---CCEeeccee
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNS-IAFLY---VHISAFLAW 75 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s-~rFlf---dG~rI~~~~ 75 (78)
++.|+||+.- .|.-+.|++..+..+..|.+.-+++.++..+. +...| +|..+..|+
T Consensus 4 ~~~vkvK~~~-~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisS 63 (89)
T 1vd2_A 4 GSQVRVKAYY-RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSS 63 (89)
T ss_dssp SSCEEEEEES-SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCS
T ss_pred CCeEEEEEEe-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccC
Confidence 4568999986 46788999999999999999999999987544 77777 477777665
No 110
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=90.03 E-value=1.1 Score=26.54 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=42.9
Q ss_pred CCcEEEEEEc---cCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECC
Q 034926 19 SAHINLKVKG---QDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVH 68 (78)
Q Consensus 19 ~~~I~lkV~~---qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG 68 (78)
...|+|.|.. .+|..+..++-.++...+|...=+...|++....|+.|.+
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~ 59 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYES 59 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEEC
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEc
Confidence 3468888864 3677888999999999999999999999999999998863
No 111
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=85.84 E-value=1 Score=34.65 Aligned_cols=33 Identities=9% Similarity=0.289 Sum_probs=31.2
Q ss_pred EEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEE
Q 034926 34 VFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66 (78)
Q Consensus 34 v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlf 66 (78)
..|||.+++++..|.+.-++..|++.+.+||+.
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~ 70 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 70 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEE
Confidence 479999999999999999999999999999985
No 112
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=85.45 E-value=1.4 Score=31.01 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=39.4
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCC-CeEEEEE
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEL-NSIAFLY 66 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~-~s~rFlf 66 (78)
...|.++|.-.||....|.|..+|.-+.|++.-|++.|+.. ..+-+.|
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~ 63 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAI 63 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEE
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEE
Confidence 45799999999999999999999999999999999999753 3344433
No 113
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=85.45 E-value=1 Score=32.67 Aligned_cols=52 Identities=17% Similarity=0.184 Sum_probs=46.2
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEE---ECCEeec
Q 034926 20 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFL---YVHISAF 72 (78)
Q Consensus 20 ~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFl---fdG~rI~ 72 (78)
+.|+|+|+. .|....+.|..++....|...-++..|+++..-|++ |.|..+.
T Consensus 4 ~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~ 58 (320)
T 3shq_A 4 KEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAA 58 (320)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCC
T ss_pred ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccC
Confidence 468889986 678888999999999999999999999999999999 8887654
No 114
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=83.88 E-value=2.8 Score=30.06 Aligned_cols=47 Identities=15% Similarity=0.301 Sum_probs=40.6
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCC-CCeEEEEE
Q 034926 20 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVE-LNSIAFLY 66 (78)
Q Consensus 20 ~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~-~~s~rFlf 66 (78)
.++.++|.-.||....|.|..+|.-+.|++.-|++.|+. ...+.+.+
T Consensus 84 ~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~ 131 (371)
T 3ivf_A 84 KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVR 131 (371)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEEC
T ss_pred ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEE
Confidence 479999999999999999999999999999999999975 44455554
No 115
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=82.57 E-value=3.2 Score=28.95 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=40.4
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCC-CCeEEEEE--CCEe
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVE-LNSIAFLY--VHIS 70 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~-~~s~rFlf--dG~r 70 (78)
...+.++|.-.|| ++.|.|..+|.-+.|++.-|++.|+. ...+-+.| +|..
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~ 73 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTV 73 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcC
Confidence 5679999999999 78999999999999999999999975 33344433 5543
No 116
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=82.23 E-value=5.3 Score=22.96 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=35.4
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEE
Q 034926 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFL 65 (78)
Q Consensus 21 ~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFl 65 (78)
..+|.|+-.||..+.-+...+.+++.|++ |.+..+.+...+++.
T Consensus 7 ~~~i~iRlpdG~r~~~~F~~~~tl~~v~~-fv~~~~~~~~~f~L~ 50 (84)
T 3qx1_A 7 VSKLRIRTPSGEFLERRFLASNKLQIVFD-FVASKGFPWDEYKLL 50 (84)
T ss_dssp EEEEEEECTTSCEEEEEEETTSBHHHHHH-HHHHTTCCTTTEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCCCHHHHHH-HHHHcCCCCCCeEEE
Confidence 57788888999999889999999998887 444466677777776
No 117
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=82.16 E-value=2.5 Score=29.16 Aligned_cols=45 Identities=22% Similarity=0.297 Sum_probs=37.0
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCC-CeEEEEE
Q 034926 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEL-NSIAFLY 66 (78)
Q Consensus 21 ~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~-~s~rFlf 66 (78)
.|+++|.-.|| ++.|.|..+|.-+.|++.-|++.|+.. ..+-+.|
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~ 46 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQY 46 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEE
Confidence 37888888888 688999999999999999999999753 3345444
No 118
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=81.30 E-value=7.1 Score=23.81 Aligned_cols=46 Identities=7% Similarity=0.089 Sum_probs=35.6
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEE
Q 034926 20 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFL 65 (78)
Q Consensus 20 ~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFl 65 (78)
...+|.|+-.||..+.-+...+.+++.|++.-....+.+...+.|.
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~ 57 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLA 57 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEE
Confidence 4688888889999999999999999999987655555554555554
No 119
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=78.69 E-value=9.7 Score=23.82 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=36.3
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEE
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFL 65 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFl 65 (78)
....+|.|+-.||..+.-+...+.+|..|++.-... +.+...+.|.
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~ 86 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELL 86 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEe
Confidence 457999999999999999999999999998855333 6555666665
No 120
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=76.32 E-value=8.6 Score=29.81 Aligned_cols=46 Identities=22% Similarity=0.353 Sum_probs=38.3
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCC-CCeEEEEE
Q 034926 20 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVE-LNSIAFLY 66 (78)
Q Consensus 20 ~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~-~~s~rFlf 66 (78)
..|.++|.-.|| .+.|.|..+|.-+.|++.-|++.|+. ...|-+.|
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~ 49 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQY 49 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEE
Confidence 469999999998 68899999999999999999999974 33455444
No 121
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=73.95 E-value=11 Score=21.96 Aligned_cols=45 Identities=2% Similarity=-0.026 Sum_probs=37.0
Q ss_pred EEEEEEcc--CCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEE
Q 034926 22 INLKVKGQ--DGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66 (78)
Q Consensus 22 I~lkV~~q--dg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlf 66 (78)
|+|.|... .......++.++.....|...-.++.|.+++..|+.|
T Consensus 3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~ 49 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQL 49 (86)
T ss_dssp EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEE
T ss_pred EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 55555532 3444578999999999999999999999999999987
No 122
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=71.15 E-value=20 Score=27.05 Aligned_cols=48 Identities=15% Similarity=0.163 Sum_probs=41.7
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCC--CCeEEEEE
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVE--LNSIAFLY 66 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~--~~s~rFlf 66 (78)
...+.++|.-.||..+.|.|..+|.-+.|++.-|++.|+. .+.+.+.+
T Consensus 214 ~~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 214 RQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred CCCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 4579999999999999999999999999999999999986 35666655
No 123
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=70.93 E-value=9.7 Score=24.38 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=36.2
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCC
Q 034926 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELN 60 (78)
Q Consensus 21 ~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~ 60 (78)
|=.|+|+=.||....+.|-.+.+...++..=|++.|+...
T Consensus 11 ~r~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~ 50 (128)
T 2kc2_A 11 MRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNH 50 (128)
T ss_dssp EEEEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCC
T ss_pred CccEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCc
Confidence 5578888899999999999999999999999999998744
No 124
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.08 E-value=13 Score=22.43 Aligned_cols=45 Identities=4% Similarity=0.118 Sum_probs=38.9
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEE
Q 034926 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLY 66 (78)
Q Consensus 21 ~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlf 66 (78)
-+.++|.- .|..+.+.|..++....|...=+++.|+++..-|++|
T Consensus 9 m~~~~vk~-~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~ 53 (100)
T 2dzm_A 9 MLDFRVEY-RDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKG 53 (100)
T ss_dssp EEEEEEEC-SSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEEC
T ss_pred eEEEEEEe-CCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEc
Confidence 46667765 6778889999999999999999999999999988876
No 125
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=67.50 E-value=1.4 Score=25.71 Aligned_cols=41 Identities=12% Similarity=0.221 Sum_probs=33.8
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeE
Q 034926 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSI 62 (78)
Q Consensus 21 ~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~ 62 (78)
.+.|||++.+|.. .+.+-.++.+..|.+.-++..+++....
T Consensus 4 ~m~lRvrs~~G~~-Ri~v~~~~t~~~L~~~I~~~~~i~~~~~ 44 (80)
T 2pjh_A 4 SIIIRVQSPDGVK-RITATKRETAATFLKKVAKEFGFQNNGF 44 (80)
T ss_dssp CCCCEEECSSEEE-ECCCCSSCCHHHHHHHHHHHTCCCTTTC
T ss_pred cEEEEEECCCCCE-EEEcCCcChHHHHHHHHHHHcCCCCCcc
Confidence 4779999999854 5668899999999999999998875553
No 126
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=66.00 E-value=12 Score=23.94 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=47.0
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCC---------CCeEEEEECCEeecc
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVE---------LNSIAFLYVHISAFL 73 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~---------~~s~rFlfdG~rI~~ 73 (78)
.+.|..+|.-.|.+.+..+++.++.-+.|+.+-++|.+.. +--+...+.|.|+-+
T Consensus 7 ~Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vl 70 (120)
T 2dhz_A 7 GDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLL 70 (120)
T ss_dssp CCCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEEC
T ss_pred CCcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeec
Confidence 4579999999999999999999999999999999999863 556778888888754
No 127
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=65.85 E-value=14 Score=29.14 Aligned_cols=48 Identities=23% Similarity=0.236 Sum_probs=40.7
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCC-CCeEEEEE
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVE-LNSIAFLY 66 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~-~~s~rFlf 66 (78)
...|.++|.-.||....|.|...|.-+.|++.-|++.|+. ...+.+.+
T Consensus 261 ~~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 261 KKPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred CCceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 3579999999999999999999999999999999999964 34455444
No 128
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=62.43 E-value=8.8 Score=23.91 Aligned_cols=55 Identities=15% Similarity=0.133 Sum_probs=45.9
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCC---CCCeEEEEECCEeecc
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV---ELNSIAFLYVHISAFL 73 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl---~~~s~rFlfdG~rI~~ 73 (78)
++.|..+|--.|.+.+..+++.++.-+.|+.+-+++.+. ++--+..-++|.|+-+
T Consensus 7 sD~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~l 64 (104)
T 1wgy_A 7 GEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHEL 64 (104)
T ss_dssp SSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBC
T ss_pred CCceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeec
Confidence 457889999999999999999999999999999999986 4455667778887654
No 129
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=60.91 E-value=16 Score=22.43 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=19.8
Q ss_pred CCCcEEEEEEccCCCEEEEEEeC
Q 034926 18 QSAHINLKVKGQDGNEVFFRIKR 40 (78)
Q Consensus 18 ~~~~I~lkV~~qdg~~v~FkIK~ 40 (78)
...+|+|.|.+.++....|.|.+
T Consensus 5 g~k~i~i~v~~~~~~~~~~~v~t 27 (101)
T 3u7z_A 5 GEKHITVTVIHGDQTENVFEFDT 27 (101)
T ss_dssp CCEEEEEEEECTTSCEEEEEEEE
T ss_pred ceeEEEEEEEcCCCceeEEEEcC
Confidence 35689999999999999898884
No 130
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=60.24 E-value=26 Score=21.19 Aligned_cols=52 Identities=12% Similarity=0.079 Sum_probs=42.6
Q ss_pred cEEEEEEccCCCEEEEEEeC--CchHHHHHHHHHhhcCCCCCeEEEEE---CCEeeccee
Q 034926 21 HINLKVKGQDGNEVFFRIKR--STQLKKLMNAYCDRQSVELNSIAFLY---VHISAFLAW 75 (78)
Q Consensus 21 ~I~lkV~~qdg~~v~FkIK~--~t~l~KLm~aYc~r~gl~~~s~rFlf---dG~rI~~~~ 75 (78)
.++|+|.- .|+...|.|-- ++.+..|..-.+...|++ ++.+.| ||..|+.+|
T Consensus 6 ~v~lkV~f-~ge~~rf~vs~~~~~tweel~~mvk~~f~L~--~~~ikY~DEenD~v~i~S 62 (87)
T 2bkf_A 6 QVTLNVTF-KNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVSINS 62 (87)
T ss_dssp CEEEEEEE-TTEEEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEEECTTSCEEEECS
T ss_pred eEEEEEEE-cCCeeEEEeccCCCCCHHHHHHHHHHHcCCC--ceEEEEEcCCCCEEEEec
Confidence 68888875 67777899966 999999999999999997 777777 777777665
No 131
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=57.84 E-value=4.3 Score=21.07 Aligned_cols=29 Identities=3% Similarity=0.114 Sum_probs=24.0
Q ss_pred EEEEEEeCCchHHHHHHHHHhhcCCCCCe
Q 034926 33 EVFFRIKRSTQLKKLMNAYCDRQSVELNS 61 (78)
Q Consensus 33 ~v~FkIK~~t~l~KLm~aYc~r~gl~~~s 61 (78)
...+.|+-+..+..-++.||++.|++.+.
T Consensus 9 ~~~i~vrl~~el~~~l~~~a~~~g~s~s~ 37 (55)
T 2k9i_A 9 GIKLGVYIPQEWHDRLMEIAKEKNLTLSD 37 (55)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHTCCHHH
T ss_pred cceEEEEcCHHHHHHHHHHHHHhCCCHHH
Confidence 45677888899999999999999987543
No 132
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=56.52 E-value=22 Score=24.19 Aligned_cols=46 Identities=7% Similarity=0.092 Sum_probs=35.3
Q ss_pred cEEEEEEccC--CCEEEEEEeCCchHHHHHHHHHhhcCCCCC-eEEEEE
Q 034926 21 HINLKVKGQD--GNEVFFRIKRSTQLKKLMNAYCDRQSVELN-SIAFLY 66 (78)
Q Consensus 21 ~I~lkV~~qd--g~~v~FkIK~~t~l~KLm~aYc~r~gl~~~-s~rFlf 66 (78)
.+.|++.... .+.+.+.+.+...++.|.+.-|+..+++.+ .+|+..
T Consensus 139 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~ 187 (231)
T 3jyu_A 139 LLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWN 187 (231)
T ss_dssp CEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEE
T ss_pred cceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 3555555422 223457789999999999999999999987 699986
No 133
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=52.27 E-value=34 Score=26.12 Aligned_cols=45 Identities=4% Similarity=0.145 Sum_probs=36.8
Q ss_pred cEEEEEEc---cCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEE
Q 034926 21 HINLKVKG---QDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFL 65 (78)
Q Consensus 21 ~I~lkV~~---qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFl 65 (78)
.|.+++.. ++.....+.+.+..+...|-++++++.|+++..+||.
T Consensus 239 rv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l~~dP~~lRf~ 286 (530)
T 2ylm_A 239 RVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFF 286 (530)
T ss_dssp EEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHHTSCGGGEEEE
T ss_pred ceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHhCCCchhEEEE
Confidence 35555553 3345578889999999999999999999999999996
No 134
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=47.52 E-value=46 Score=20.61 Aligned_cols=52 Identities=12% Similarity=0.079 Sum_probs=40.9
Q ss_pred cEEEEEEccCCCEEEEEEeC--CchHHHHHHHHHhhcCCCCCeEEEEE---CCEeeccee
Q 034926 21 HINLKVKGQDGNEVFFRIKR--STQLKKLMNAYCDRQSVELNSIAFLY---VHISAFLAW 75 (78)
Q Consensus 21 ~I~lkV~~qdg~~v~FkIK~--~t~l~KLm~aYc~r~gl~~~s~rFlf---dG~rI~~~~ 75 (78)
.++|+|.- .|+...|.|-- ++.+..|..-.+...|++ ++.+.| ||..|..++
T Consensus 14 ~v~lkV~f-~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~--~~~IkY~DEenD~V~i~S 70 (101)
T 1wj6_A 14 QVTLNVTF-KNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVSINS 70 (101)
T ss_dssp CEEEEEEE-TTEEEEEEESCTTTSCHHHHHHHHHHHHCCS--SBCCEEECTTSCEECCCS
T ss_pred cEEEEEEE-cCCeeEEEecCCCCCCHHHHHHHHHHHcCCC--ceEEEEecCCCCEEEEec
Confidence 68999975 66777899965 999999999999999987 556666 666666554
No 135
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=47.04 E-value=39 Score=22.63 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=34.8
Q ss_pred cEEEEEEccC--CCEEEEEEeCCchHHHHHHHHHhhcCCCCC-eEEEEE
Q 034926 21 HINLKVKGQD--GNEVFFRIKRSTQLKKLMNAYCDRQSVELN-SIAFLY 66 (78)
Q Consensus 21 ~I~lkV~~qd--g~~v~FkIK~~t~l~KLm~aYc~r~gl~~~-s~rFlf 66 (78)
.+.|++.... ...+.+.+.+...++.|.+.-|+..+++.+ .+|+..
T Consensus 127 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~ 175 (217)
T 4a3p_A 127 LTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWN 175 (217)
T ss_dssp CEEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEE
T ss_pred ccEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEE
Confidence 3555554322 233568889999999999999999999986 688874
No 136
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=46.26 E-value=45 Score=20.66 Aligned_cols=36 Identities=11% Similarity=0.320 Sum_probs=25.9
Q ss_pred CCcEEEEEEccCCCEE-EEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEe
Q 034926 19 SAHINLKVKGQDGNEV-FFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHIS 70 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v-~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~r 70 (78)
...++|.|.|.+|+.| .+.+. ..+....+|.+||..
T Consensus 38 a~~v~v~I~d~~G~~V~t~~~~----------------~~~aG~~~~~WDg~d 74 (138)
T 3c12_A 38 AGFVNFEITDANGTFVKQLSVP----------------ASAAGEVSFAWDGTD 74 (138)
T ss_dssp SEEEEEEEECSSCCEEEEEEEE----------------ESSSEEEEEEECSBC
T ss_pred CCEEEEEEEeCCCCEEEEEEcC----------------CcCCceEEEEECCcC
Confidence 3479999999999887 33332 245667889998864
No 137
>2gw6_A TRNA-splicing endonuclease subunit SEN15; SEN15_human, tRNA endonuclease, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: c.52.2.1
Probab=45.60 E-value=27 Score=21.94 Aligned_cols=21 Identities=14% Similarity=0.438 Sum_probs=18.7
Q ss_pred CCcEEEEEEccCCCEEEEEEe
Q 034926 19 SAHINLKVKGQDGNEVFFRIK 39 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK 39 (78)
...|+|-+.++|++.|+++|-
T Consensus 102 ~~ri~LaIv~~DSTIVYY~v~ 122 (123)
T 2gw6_A 102 PMSFTLAIVESDSTIVYYKLT 122 (123)
T ss_dssp CCEEEEEEECTTSCEEEEEEE
T ss_pred CCEEEEEEEcCCCCEEEEEEe
Confidence 468999999999999999874
No 138
>3fcg_A F1 capsule-anchoring protein; beta barrel, beta strand swapping, cell membrane, cell outer membrane, cell projection, fimbrium, membrane; 2.85A {Yersinia pestis}
Probab=44.92 E-value=29 Score=20.85 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=19.9
Q ss_pred CCCCCCcEEEEEEccCCCEEEEEEeC
Q 034926 15 PNDQSAHINLKVKGQDGNEVFFRIKR 40 (78)
Q Consensus 15 p~~~~~~I~lkV~~qdg~~v~FkIK~ 40 (78)
+...+..+.+.|.+.||++..|.+--
T Consensus 55 ~~~~~Gdl~V~v~eadG~~~~~~vp~ 80 (90)
T 3fcg_A 55 LGGGSGELKVIIHESDGTKQVFTVPY 80 (90)
T ss_dssp ---CCEEEEEEEECTTSCEEEEEEEE
T ss_pred ccCCceeEEEEEEECCCCEEEEEECc
Confidence 33445689999999999999998863
No 139
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=43.66 E-value=32 Score=22.04 Aligned_cols=35 Identities=9% Similarity=0.200 Sum_probs=22.9
Q ss_pred EEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeE
Q 034926 26 VKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSI 62 (78)
Q Consensus 26 V~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~ 62 (78)
..+.+|+.+ .+----.+..++.+||+.+|+.++.+
T Consensus 120 ~~~~~g~~~--~~~d~~~~~~~~~~~~~~~g~~~~~~ 154 (159)
T 3ebr_A 120 YLDDKDNII--AVENWKTSMDRYLNYCKAHGIRPKDL 154 (159)
T ss_dssp EECTTCCEE--EEECHHHHHHHHHHHHHHTTCCCCCC
T ss_pred ecCCCCCEE--EEcCHHHHHHHHHHHHHHcCCCcccc
Confidence 345566653 12223356778999999999987654
No 140
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=42.87 E-value=37 Score=20.79 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=35.5
Q ss_pred CcEEEEEEccC-------CCEEEEEEeCCchHHHHHHHHHhhcCCC----C-CeEEEEE
Q 034926 20 AHINLKVKGQD-------GNEVFFRIKRSTQLKKLMNAYCDRQSVE----L-NSIAFLY 66 (78)
Q Consensus 20 ~~I~lkV~~qd-------g~~v~FkIK~~t~l~KLm~aYc~r~gl~----~-~s~rFlf 66 (78)
..|.+||.-++ +..+.+.|..+..+..|.+.=++|.++. . ..+++.|
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkY 62 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKY 62 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEE
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEE
Confidence 45889998543 4457889999999999999999988763 1 3356666
No 141
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus}
Probab=41.73 E-value=23 Score=19.29 Aligned_cols=32 Identities=22% Similarity=0.516 Sum_probs=26.0
Q ss_pred CCCEEEEEEeCCchHHHHHHHHHhhcCCCCCe
Q 034926 30 DGNEVFFRIKRSTQLKKLMNAYCDRQSVELNS 61 (78)
Q Consensus 30 dg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s 61 (78)
+.....|.|+-+..|.+-+..||...|.+.+.
T Consensus 10 ~k~kg~~~vrId~eLH~rlk~~Aa~~g~Sln~ 41 (56)
T 2kel_A 10 KKQKAVFGIYMDKDLKTRLKVYCAKNNLQLTQ 41 (56)
T ss_dssp -CCEEEEEEEEEHHHHHHHHHHHHHSCCCHHH
T ss_pred ccCeeeEEEEeCHHHHHHHHHHHHHcCCCHHH
Confidence 45566888888999999999999999987653
No 142
>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}
Probab=41.37 E-value=51 Score=20.45 Aligned_cols=35 Identities=14% Similarity=0.267 Sum_probs=25.2
Q ss_pred CcEEEEEEccCCCEE-EEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEe
Q 034926 20 AHINLKVKGQDGNEV-FFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHIS 70 (78)
Q Consensus 20 ~~I~lkV~~qdg~~v-~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~r 70 (78)
..++|.|.|.+|+.| .+.+. ..+....+|.+||..
T Consensus 37 ~~v~v~I~d~~G~~V~t~~~g----------------~~~aG~~~f~WDG~d 72 (138)
T 3osv_A 37 SNVWVNVYDDKGTVVNRINLG----------------QQAAGSVSFMWDGKD 72 (138)
T ss_dssp EEEEEEEECTTSCEEEEEEEE----------------EECSEEEEEEECSBC
T ss_pred cEEEEEEEcCCCCEEEEEEcC----------------CcCCceEEEEECCcC
Confidence 479999999999886 34432 145667789998864
No 143
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=41.00 E-value=25 Score=21.67 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=17.2
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCch
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQ 43 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~ 43 (78)
+.-++|+|. |.+|.|||..+.+
T Consensus 42 ~~F~~isV~---g~aVTFrV~~N~~ 63 (99)
T 4hti_A 42 SAFADVEVL---GPAVTFKVSANVQ 63 (99)
T ss_dssp GGEEEEEEE---TTEEEEEECCCTT
T ss_pred hheeeeeec---CceEEEEeccCCC
Confidence 346888885 5899999998764
No 144
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=40.49 E-value=64 Score=19.93 Aligned_cols=46 Identities=15% Similarity=0.338 Sum_probs=33.1
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHh-hcCCCCCeEEEE
Q 034926 20 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCD-RQSVELNSIAFL 65 (78)
Q Consensus 20 ~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~-r~gl~~~s~rFl 65 (78)
...+|.|+-.||..+.-+...+.++..|++--.. +.+.+...+.|.
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~ 97 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLM 97 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEe
Confidence 3567777778999999999999999999886543 233444555554
No 145
>1d8w_A L-rhamnose isomerase; beta-alpha-8-barrels, aldose-ketose isomerization, hydride shift; 1.60A {Escherichia coli} SCOP: c.1.15.2 PDB: 1de5_A* 1de6_A*
Probab=40.26 E-value=18 Score=27.73 Aligned_cols=21 Identities=19% Similarity=0.479 Sum_probs=18.7
Q ss_pred CCchHHHHHHHHHhhcCCCCC
Q 034926 40 RSTQLKKLMNAYCDRQSVELN 60 (78)
Q Consensus 40 ~~t~l~KLm~aYc~r~gl~~~ 60 (78)
++-|+.-+.+.||.+.+++.+
T Consensus 387 k~~P~~avwd~~c~~~~vp~~ 407 (426)
T 1d8w_A 387 KSLPWQAVWEMYCQRHDTPAG 407 (426)
T ss_dssp TTSCHHHHHHHHHHHTTCCCS
T ss_pred hcCChHHHHHHHHHHcCCCCc
Confidence 477999999999999999865
No 146
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=40.21 E-value=31 Score=20.66 Aligned_cols=31 Identities=35% Similarity=0.555 Sum_probs=21.9
Q ss_pred cEEEEEEccCCCEEEEEEeCCc------hHHHHHHHHH
Q 034926 21 HINLKVKGQDGNEVFFRIKRST------QLKKLMNAYC 52 (78)
Q Consensus 21 ~I~lkV~~qdg~~v~FkIK~~t------~l~KLm~aYc 52 (78)
.|+|+++- ||.++.+.|+-+| .|+.|-+|.+
T Consensus 7 ditikiqr-dgqeieidirvstgkeleralqelekala 43 (96)
T 2jvf_A 7 DITIKIQR-DGQEIEIDIRVSTGKELERALQELEKALA 43 (96)
T ss_dssp EEEEEEEE-TTEEEEEEEECCSSSHHHHHHHHHHHHHH
T ss_pred EEEEEEee-CCeEEEEEEEEcccHHHHHHHHHHHHHHH
Confidence 58999986 8999888777665 3445555554
No 147
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=39.74 E-value=65 Score=20.27 Aligned_cols=33 Identities=3% Similarity=0.126 Sum_probs=29.5
Q ss_pred CCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeE
Q 034926 30 DGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSI 62 (78)
Q Consensus 30 dg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~ 62 (78)
.|+.+.+++.+...|..=..++|.+.|+....+
T Consensus 11 ~g~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v 43 (147)
T 3hwu_A 11 TPTGYLMVLRHGDNVLQNLEQLARDEHIPSASF 43 (147)
T ss_dssp ETTEEEEEEETTCBHHHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHcCCCEEEE
Confidence 378899999999999999999999999886655
No 148
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=39.55 E-value=32 Score=19.42 Aligned_cols=49 Identities=8% Similarity=0.086 Sum_probs=36.7
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeeccee
Q 034926 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLAW 75 (78)
Q Consensus 21 ~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~~ 75 (78)
+|+|++-+. .+....+...+.+..|.+ +.|++...+-++.||.-+.+..
T Consensus 2 ~v~Vkl~g~--~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~ 50 (74)
T 2l32_A 2 NVTVEVVGE--ETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ 50 (74)
T ss_dssp EEEEECSSS--SEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS
T ss_pred EEEEEEeCc--cceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH
Confidence 366777643 344578888888888876 5899999999999998776543
No 149
>3p14_A L-rhamnose isomerase; TIM barrel; 2.51A {Bacillus halodurans} SCOP: c.1.15.2 PDB: 3uu0_A 3uva_A 3uxi_A
Probab=39.53 E-value=16 Score=27.91 Aligned_cols=21 Identities=29% Similarity=0.687 Sum_probs=18.6
Q ss_pred CCchHHHHHHHHHhhcCCCCC
Q 034926 40 RSTQLKKLMNAYCDRQSVELN 60 (78)
Q Consensus 40 ~~t~l~KLm~aYc~r~gl~~~ 60 (78)
++-|+.-+.+.||.+.|++.+
T Consensus 385 k~~p~~~vw~~~c~~~~vp~~ 405 (424)
T 3p14_A 385 KTYPLGAIWNEYCERMNVPIK 405 (424)
T ss_dssp GGSSHHHHHHHHHHHTTCCCT
T ss_pred hcCChHHHHHHHHHhcCCCCc
Confidence 477999999999999999865
No 150
>1k3e_A CEST; chaperone, secretion, type III, intimin receptor; 2.80A {Escherichia coli} SCOP: d.198.1.1
Probab=38.24 E-value=40 Score=22.20 Aligned_cols=29 Identities=14% Similarity=0.267 Sum_probs=24.0
Q ss_pred CchHHHHHHHHHhhcCCC------CCeEEEEECCE
Q 034926 41 STQLKKLMNAYCDRQSVE------LNSIAFLYVHI 69 (78)
Q Consensus 41 ~t~l~KLm~aYc~r~gl~------~~s~rFlfdG~ 69 (78)
+.+...|++.+|++.|++ -+..+|.+|+.
T Consensus 2 ~~~~e~LL~efg~~lGLp~L~fDeng~C~L~IDd~ 36 (156)
T 1k3e_A 2 SSRSELLLEKFAEKIGIGSISFNENRLCSFAIDEI 36 (156)
T ss_dssp CCHHHHHHHHHHHHHSCCCCCCCTTSCCEEEECCC
T ss_pred chHHHHHHHHHHHHcCCCCcccCCCCcEEEEECCe
Confidence 567899999999999998 45577888875
No 151
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=36.16 E-value=82 Score=19.93 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=41.8
Q ss_pred CcEEEEEEccCCCE-------EEEEEeCCchHHHHHHHHHhhcCCCCCeEEEE-ECCEeecc
Q 034926 20 AHINLKVKGQDGNE-------VFFRIKRSTQLKKLMNAYCDRQSVELNSIAFL-YVHISAFL 73 (78)
Q Consensus 20 ~~I~lkV~~qdg~~-------v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFl-fdG~rI~~ 73 (78)
++|-|.|.-..++. -.|.|..+..+..++..=-++.+++.+.--|+ |.+..+-.
T Consensus 34 ~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~ 95 (130)
T 2zjd_A 34 TKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVS 95 (130)
T ss_dssp TEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECC
T ss_pred CceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCC
Confidence 46777775333222 47999999999999999999999999988888 87765443
No 152
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=35.48 E-value=67 Score=18.73 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=34.9
Q ss_pred CCcEEEEEEc--cCCCEEEEEEeCCchHHHHHHHHHhhcCCCC
Q 034926 19 SAHINLKVKG--QDGNEVFFRIKRSTQLKKLMNAYCDRQSVEL 59 (78)
Q Consensus 19 ~~~I~lkV~~--qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~ 59 (78)
+.||+|++-- ..|..+-++|-..-++++|.+.-.+-.+++.
T Consensus 2 ~~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~ 44 (81)
T 2bps_A 2 GSYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSM 44 (81)
T ss_dssp CCEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCS
T ss_pred CcEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCc
Confidence 4588888874 5688899999999999999999999888764
No 153
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=34.91 E-value=63 Score=19.35 Aligned_cols=50 Identities=14% Similarity=0.333 Sum_probs=35.4
Q ss_pred CCcEEEEEEccCC----CEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEee
Q 034926 19 SAHINLKVKGQDG----NEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISA 71 (78)
Q Consensus 19 ~~~I~lkV~~qdg----~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI 71 (78)
.++|+|+++--.. ..-.|.|..+.++..++.-=.+|..++ --|+|-+...
T Consensus 11 ~~KV~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~---alFlyvn~~~ 64 (96)
T 1wz3_A 11 VQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD---SLFVYVNSAF 64 (96)
T ss_dssp -CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS---SCEEEEEEEE
T ss_pred CCeEEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc---eEEEEECCcc
Confidence 4577777765422 123799999999999999999999887 3455655533
No 154
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=34.51 E-value=14 Score=18.30 Aligned_cols=26 Identities=8% Similarity=0.061 Sum_probs=21.6
Q ss_pred EEEEeCCchHHHHHHHHHhhcCCCCC
Q 034926 35 FFRIKRSTQLKKLMNAYCDRQSVELN 60 (78)
Q Consensus 35 ~FkIK~~t~l~KLm~aYc~r~gl~~~ 60 (78)
.+.|.-+..+..-++.||++.|.+.+
T Consensus 4 ritv~l~~~l~~~Ld~~a~~~g~srS 29 (45)
T 2cpg_A 4 RLTITLSESVLENLEKMAREMGLSKS 29 (45)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHTCCHH
T ss_pred eEEEecCHHHHHHHHHHHHHHCcCHH
Confidence 46777788899999999999998643
No 155
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=34.41 E-value=48 Score=17.04 Aligned_cols=26 Identities=4% Similarity=0.089 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEECC
Q 034926 43 QLKKLMNAYCDRQSVELNSIAFLYVH 68 (78)
Q Consensus 43 ~l~KLm~aYc~r~gl~~~s~rFlfdG 68 (78)
=.+.|.+++++..|++...+...|..
T Consensus 20 l~~~lt~~l~~~lg~~~~~v~V~i~e 45 (64)
T 3abf_A 20 LVRRLTEMASRLLGEPYEEVRVILYE 45 (64)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 36677888888999999988877643
No 156
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3
Probab=33.56 E-value=11 Score=21.92 Aligned_cols=32 Identities=13% Similarity=0.255 Sum_probs=27.2
Q ss_pred CCCEEEEEEeCCchHHHHHHHHHhhcCCCCCe
Q 034926 30 DGNEVFFRIKRSTQLKKLMNAYCDRQSVELNS 61 (78)
Q Consensus 30 dg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s 61 (78)
.+....+.|.-+..+..-++.||-..|++++.
T Consensus 31 ~~~~~Rlti~i~~~lh~rlK~~Aa~~g~Smsd 62 (76)
T 1p94_A 31 SGKIKRVNVNFDEEKHTRFKAACARKGTSITD 62 (76)
T ss_dssp TTCEEECCEEEEHHHHHHHHHHHHHHTCCHHH
T ss_pred ccCceeEEEEcCHHHHHHHHHHHHHcCCCHHH
Confidence 55677888888999999999999999988653
No 157
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=32.31 E-value=64 Score=17.58 Aligned_cols=50 Identities=8% Similarity=0.163 Sum_probs=37.7
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeeccee
Q 034926 21 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLAW 75 (78)
Q Consensus 21 ~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~~ 75 (78)
.++|+|-++.+++ .+.+...+.+..|.+.. +++...+.+..||.-+..+.
T Consensus 4 ~m~i~vNg~~~~~-~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~ 53 (70)
T 1ryj_A 4 GMKFTVITDDGKK-ILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE 53 (70)
T ss_dssp CEEEEEEETTEEE-EEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS
T ss_pred eEEEEEeCccCce-eEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc
Confidence 3788888866544 56777888888888754 67788889999999776543
No 158
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=32.19 E-value=61 Score=17.24 Aligned_cols=49 Identities=12% Similarity=0.072 Sum_probs=30.9
Q ss_pred EEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecceee
Q 034926 24 LKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLAWA 76 (78)
Q Consensus 24 lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~~~ 76 (78)
++|.-++|.. +.+...+.+..|...+... +....+-...||+.+.+++.
T Consensus 3 i~i~~p~g~~--~~~~~g~T~~dla~~i~~~--l~~~~vaa~vNg~lvdl~~~ 51 (73)
T 2kmm_A 3 VMVFTPKGEI--KRLPQGATALDFAYSLHSD--LGDHCIGAKVNHKLVPLSYV 51 (73)
T ss_dssp EEEECTTCCE--EEECTTCBHHHHHHHHCSH--HHHTEEEEEETTEECCTTCB
T ss_pred EEEEcCCCCE--EEcCCCCcHHHHHHHHhhc--cccceEEEEECCEEeCCCcC
Confidence 4555567776 4566777777777665322 23345666789998877654
No 159
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=29.78 E-value=50 Score=19.96 Aligned_cols=39 Identities=10% Similarity=0.185 Sum_probs=26.7
Q ss_pred EEEEEeCCchHHHHHHHHHhhcC--CCCCeEEEEEC--CEeec
Q 034926 34 VFFRIKRSTQLKKLMNAYCDRQS--VELNSIAFLYV--HISAF 72 (78)
Q Consensus 34 v~FkIK~~t~l~KLm~aYc~r~g--l~~~s~rFlfd--G~rI~ 72 (78)
+.+.|.++..|+.|++..|++.. +..-+++.-.+ |+.|+
T Consensus 7 ~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LY 49 (98)
T 1y8x_B 7 QNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLY 49 (98)
T ss_dssp CCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEE
T ss_pred EEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEE
Confidence 35688999999999999999654 44445554433 44444
No 160
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=29.27 E-value=62 Score=23.16 Aligned_cols=36 Identities=11% Similarity=0.196 Sum_probs=30.7
Q ss_pred EEEEEccCCC----EEEEEEeCCchHHHHHHHHHhhcCCC
Q 034926 23 NLKVKGQDGN----EVFFRIKRSTQLKKLMNAYCDRQSVE 58 (78)
Q Consensus 23 ~lkV~~qdg~----~v~FkIK~~t~l~KLm~aYc~r~gl~ 58 (78)
.++|.-.+|. ...|++..+|.-+-|++.-|++.|+.
T Consensus 9 ~l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~ 48 (375)
T 2al6_A 9 VFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVK 48 (375)
T ss_dssp EECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCS
T ss_pred eEEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCC
Confidence 4456666776 88999999999999999999999974
No 161
>2qt7_A Receptor-type tyrosine-protein phosphatase-like N; IA-2, ICA-512, protein-tyrosine phosphatase, transmembrane protein, diabetes, autoimmunity; 1.30A {Homo sapiens} PDB: 3n01_A 3np5_A 3ng8_A 3n4w_A
Probab=28.75 E-value=54 Score=19.89 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=16.0
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCc
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRST 42 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t 42 (78)
+.-++|+|. |.+|.|||.++.
T Consensus 35 ~~Ft~i~V~---g~aVTFrV~~N~ 55 (91)
T 2qt7_A 35 GSFINISVV---GPALTFRIRHNE 55 (91)
T ss_dssp GGEEEEEEE---TTEEEEEECCCT
T ss_pred cceeeeEee---cceEEEEeccCc
Confidence 345778884 689999998764
No 162
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=28.52 E-value=30 Score=19.93 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=21.1
Q ss_pred EEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecceee
Q 034926 35 FFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLAWA 76 (78)
Q Consensus 35 ~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~~~ 76 (78)
++...-...-.+.+++. .|.+ ..|.+||++|..+||
T Consensus 57 FV~f~~~~~A~~Ai~~l---ng~~---~~~~i~Gr~i~V~~A 92 (95)
T 2lkz_A 57 FVQLSSAMDASQLLQIL---QSLH---PPLKIDGKTIGVDFA 92 (95)
T ss_dssp EEECSSSHHHHHHHHHH---HSSS---SCEEETTEEEEEEEC
T ss_pred EEEECCHHHHHHHHHHh---cCCC---CCceECCEEEEEEEc
Confidence 33444344444444443 3332 247889999999987
No 163
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=28.09 E-value=44 Score=17.58 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEECC
Q 034926 44 LKKLMNAYCDRQSVELNSIAFLYVH 68 (78)
Q Consensus 44 l~KLm~aYc~r~gl~~~s~rFlfdG 68 (78)
.+.|.+++++..|++...+...++-
T Consensus 19 ~~~it~~~~~~lg~~~~~v~V~i~E 43 (62)
T 3m20_A 19 VERLTSVAAEIYGMDRSAITILIHE 43 (62)
T ss_dssp HHHHHHHHHHHHTCCTTSCEEEEEC
T ss_pred HHHHHHHHHHHhCcCcceEEEEEEE
Confidence 4567778888999999988877653
No 164
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=27.76 E-value=67 Score=19.89 Aligned_cols=25 Identities=12% Similarity=0.343 Sum_probs=21.2
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCch
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQ 43 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~ 43 (78)
+..-+|++.......+-||||-+.+
T Consensus 24 gg~~~l~L~N~t~~~vAFKVKtT~p 48 (116)
T 1m1s_A 24 GGNSTHNITSESDSRLAFKVKSSNN 48 (116)
T ss_dssp CEEEEEEEEECSSSEEEEEEEESCT
T ss_pred CCEEEEEEECCCCCeEEEEEEecCC
Confidence 4578899999989999999997765
No 165
>2gmq_A Hypothetical protein EF0006; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG, unknown function; HET: MSE; 1.76A {Enterococcus faecalis} SCOP: b.122.1.11
Probab=27.74 E-value=77 Score=19.83 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=41.0
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcC-CCCCeEEEEECCEeecce
Q 034926 20 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQS-VELNSIAFLYVHISAFLA 74 (78)
Q Consensus 20 ~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~g-l~~~s~rFlfdG~rI~~~ 74 (78)
..++++-++-.|.-+.+++|.+..|.-+.+.-----+ .....+..+=||+.+.+.
T Consensus 21 K~~~~~W~G~~GrL~~ir~K~~r~~Em~~N~QiT~ENI~EI~~i~iiKNGKsL~L~ 76 (118)
T 2gmq_A 21 KDLTLQWRGNTGKLVKVRLKNTRAMEMWYNKQITEENIQEITTLNIIKNGKSLALE 76 (118)
T ss_dssp GGEEEEEGGGTSBEEEEEECHHHHHHHHHHTSSCTTTGGGCCEEEEEETTEEEEEE
T ss_pred hhhheeeecccceEEEEEeeCCceeeehhhCCCChhhceeeeeeeeecCCcEEEEE
Confidence 4689999999999999999988777766554321112 346789999999988753
No 166
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A {Saccharomyces cerevisiae} SCOP: e.15.1.1
Probab=27.67 E-value=20 Score=25.24 Aligned_cols=17 Identities=18% Similarity=0.016 Sum_probs=14.7
Q ss_pred CCeEEEEECCEeeccee
Q 034926 59 LNSIAFLYVHISAFLAW 75 (78)
Q Consensus 59 ~~s~rFlfdG~rI~~~~ 75 (78)
+..+.|+|||+.|.++.
T Consensus 23 P~~Vk~~YdGkpv~L~p 39 (223)
T 1ois_A 23 PSHIKLYYDGKPVDLPP 39 (223)
T ss_dssp CTTCCEEETTEEECCCH
T ss_pred CCCCceeECCEECcCCH
Confidence 56899999999999874
No 167
>3nrx_A Protein regulator of cytokinesis 1; spectrin fold, microtubule binding domain, protein binding; 1.75A {Homo sapiens} PDB: 3nry_A
Probab=26.88 E-value=46 Score=21.17 Aligned_cols=25 Identities=16% Similarity=0.204 Sum_probs=18.7
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEECCEeec
Q 034926 43 QLKKLMNAYCDRQSVELNSIAFLYVHISAF 72 (78)
Q Consensus 43 ~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~ 72 (78)
.|.....+|-...|.+ |++||.++-
T Consensus 69 ~L~~~i~~wE~e~g~~-----Flv~G~~~l 93 (130)
T 3nrx_A 69 ELKARIELWEQEHSKA-----FMVNGQKFM 93 (130)
T ss_dssp HHHHHHHHHHHHHTSC-----CEETTEEHH
T ss_pred HHHHHHHHHHHHcCCe-----eeEcCccHH
Confidence 4666777787777765 999999863
No 168
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=25.82 E-value=1.8e+02 Score=20.53 Aligned_cols=41 Identities=10% Similarity=0.267 Sum_probs=36.6
Q ss_pred CCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCC
Q 034926 18 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVE 58 (78)
Q Consensus 18 ~~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~ 58 (78)
.-..+.++|-..||+...+.|-+++.-.-|.+..+.+.++.
T Consensus 28 ~~~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~ 68 (281)
T 4gmv_A 28 QVKKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCG 68 (281)
T ss_dssp SSCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCC
T ss_pred CcccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCC
Confidence 34678999999999999999999999999999999988764
No 169
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=25.70 E-value=84 Score=19.21 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=20.0
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCch
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQ 43 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~ 43 (78)
...-.|++.......|-||||-+.+
T Consensus 26 ~~~~~l~l~N~s~~~vaFKVKTT~p 50 (126)
T 1msp_A 26 KHTYHIKITNAGGRRIGWAIKTTNM 50 (126)
T ss_dssp CCCEEEEEEECSSSCEEEEEEESCT
T ss_pred ceEEEEEEECCCCCeEEEEEEcCCC
Confidence 3457788888888899999997665
No 170
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=25.61 E-value=1e+02 Score=17.60 Aligned_cols=50 Identities=12% Similarity=0.087 Sum_probs=31.8
Q ss_pred EEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEEECCEeecceee
Q 034926 23 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLYVHISAFLAWA 76 (78)
Q Consensus 23 ~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFlfdG~rI~~~~~ 76 (78)
.|.|..++|+.+ .+.+.+...-+ ||+-..++....+--.+||+++.+++.
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~--A~~Ih~~lg~~~v~AkVNG~~v~L~~~ 56 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDF--AYAIHSAVGNRMIGAKVDGRIVPIDYK 56 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHH--HHHHCHHHHHTEEEEEETTEEECTTCB
T ss_pred eEEEECCCCCEE--EecCCCCHHHH--HHHhhhhhhcceEEEEECCEEcCCCcc
Confidence 466777899874 45555444443 344344444556777789999988754
No 171
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=25.60 E-value=56 Score=19.85 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=20.0
Q ss_pred cEEEEEEccCCCEEEEEEeCCchH
Q 034926 21 HINLKVKGQDGNEVFFRIKRSTQL 44 (78)
Q Consensus 21 ~I~lkV~~qdg~~v~FkIK~~t~l 44 (78)
.-.|++.......|-||||-+.+-
T Consensus 30 ~~~l~L~N~s~~~vaFKVKTT~p~ 53 (128)
T 1z9l_A 30 TTNLKLQNPSDRKVCFKVKTTAPR 53 (128)
T ss_dssp EEEEEEECCSSSCEEEEEEESCGG
T ss_pred EEEEEEECCCCCeEEEEEECCCCC
Confidence 567888888888999999987773
No 172
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=25.56 E-value=1.1e+02 Score=17.91 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=21.1
Q ss_pred EEEEEccCCCEEEEEEeCCchHHHHHH
Q 034926 23 NLKVKGQDGNEVFFRIKRSTQLKKLMN 49 (78)
Q Consensus 23 ~lkV~~qdg~~v~FkIK~~t~l~KLm~ 49 (78)
+|++.+.+|....|.+.....|-....
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~ 28 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALR 28 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHH
Confidence 577788999998999999877665443
No 173
>2bti_A Carbon storage regulator homolog; RMSA, CSRA, RNA binding protein; 2.0A {Yersinia enterocolitica} PDB: 1y00_A
Probab=25.42 E-value=82 Score=17.75 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=17.9
Q ss_pred CCcEEEEEEccCCCEEEEEEeC
Q 034926 19 SAHINLKVKGQDGNEVFFRIKR 40 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~ 40 (78)
++.|+|+|.+-.|+.|.+-|..
T Consensus 17 gd~I~I~Vl~i~g~~VrlGI~A 38 (63)
T 2bti_A 17 GDEVTVTVLGVKGNQVRIGVNA 38 (63)
T ss_dssp TTTEEEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEEEEEeCCEEEEEEEC
Confidence 4579999999999998776653
No 174
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=24.18 E-value=1.3e+02 Score=18.26 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=36.6
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCCC
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVE 58 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~ 58 (78)
.+++.+||-..||+...+.|..+..-+-+.+.-|++.++.
T Consensus 7 ~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~ 46 (100)
T 1wgr_A 7 GRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHAL 46 (100)
T ss_dssp CSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCC
T ss_pred CCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCC
Confidence 4578999999999999999999999999999999998865
No 175
>1bm4_A Protein (moloney murine leukemia virus capsid); moloney murine leukemia virus capsid protein, momlv, MU-MLV, MHR, major homology region; NMR {Synthetic} SCOP: j.47.1.1
Probab=24.05 E-value=37 Score=16.91 Aligned_cols=13 Identities=38% Similarity=0.480 Sum_probs=9.8
Q ss_pred CCchHHHHHHHHH
Q 034926 40 RSTQLKKLMNAYC 52 (78)
Q Consensus 40 ~~t~l~KLm~aYc 52 (78)
++.-|++|++||-
T Consensus 15 Ps~FlerL~eayR 27 (32)
T 1bm4_A 15 PSAFLERLKEAYR 27 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3456889999984
No 176
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=24.02 E-value=61 Score=20.14 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=27.3
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHhhcCC
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV 57 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~aYc~r~gl 57 (78)
.+.+.++|.|.+..+|-=.| +.-.+-+|...-++..|+
T Consensus 66 ~~~~vVkVvD~~TgEVIRqI-PpEe~L~l~~~l~e~~Gl 103 (117)
T 2hc5_A 66 LNEYYVKVIEDSTNEVIREI-PPKRWLDFYAAMTEFLGL 103 (117)
T ss_dssp TTEEEEEEEETTTTEEEEEE-CHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEEEeC-ChHHHHHHHHHHHHhhce
Confidence 45788999999888864344 566777777777777763
No 177
>1v0a_A Endoglucanase H; carbohydrate binding module, cellulosome, cellulose degradation, hydrolase, glycosidase; 1.98A {Clostridium thermocellum} SCOP: b.18.1.30
Probab=23.54 E-value=60 Score=21.72 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=17.8
Q ss_pred CcEEEEEEcc--CCCEEEEEEeC
Q 034926 20 AHINLKVKGQ--DGNEVFFRIKR 40 (78)
Q Consensus 20 ~~I~lkV~~q--dg~~v~FkIK~ 40 (78)
.-|.|+|+++ +|+.+.|.||-
T Consensus 69 ~GI~l~vkG~~~nG~~y~~~LR~ 91 (178)
T 1v0a_A 69 LKISFDIKSVDGSANEIRFMIAE 91 (178)
T ss_dssp CEEEEEEEEC---CCCEEEEEEE
T ss_pred CcEEEEEEcCCCCCCEEEEEEee
Confidence 5799999997 89999999984
No 178
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=23.33 E-value=58 Score=19.74 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=18.9
Q ss_pred cEEEEEEccCCCEEEEEEeCCch
Q 034926 21 HINLKVKGQDGNEVFFRIKRSTQ 43 (78)
Q Consensus 21 ~I~lkV~~qdg~~v~FkIK~~t~ 43 (78)
.-+|++.......+-||||-+.+
T Consensus 18 ~~~l~L~N~t~~~vaFKVKtT~p 40 (109)
T 1row_A 18 SSTHKLVNGGAEKIVFKIKSSNN 40 (109)
T ss_dssp EEEEEEEECSSSCEEEEEEESCS
T ss_pred eEEEEEEcCCCCeEEEEEEeCCC
Confidence 57788888888889999997766
No 179
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=23.26 E-value=84 Score=15.91 Aligned_cols=27 Identities=7% Similarity=0.113 Sum_probs=21.2
Q ss_pred EEEEEeCCchHHHHHHHHHhhcCCCCC
Q 034926 34 VFFRIKRSTQLKKLMNAYCDRQSVELN 60 (78)
Q Consensus 34 v~FkIK~~t~l~KLm~aYc~r~gl~~~ 60 (78)
..+.|+-+..-..+++.||+..|++..
T Consensus 16 ~~i~vRlt~eE~~~l~~~A~~~g~s~S 42 (51)
T 2ba3_A 16 VVRTLRFSPVEDETIRKKAEDSGLTVS 42 (51)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHTCCHH
T ss_pred eeEEEEECHHHHHHHHHHHHHhCCCHH
Confidence 456666777888999999999998743
No 180
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=23.08 E-value=1.5e+02 Score=18.65 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=28.8
Q ss_pred cCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCe
Q 034926 29 QDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNS 61 (78)
Q Consensus 29 qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s 61 (78)
+.|+.+.+++.+...+..=..++|.+.++....
T Consensus 13 ~~gr~~~lrl~~Gedl~~~l~~~~~~~~i~~a~ 45 (149)
T 3htn_A 13 KIGNKYIVSINNHTEIVKALNAFCKEKGILSGS 45 (149)
T ss_dssp EETTEEEEEECTTCBHHHHHHHHHHHHTCCSEE
T ss_pred ecCCEEEEEECCCChHHHHHHHHHHHcCCcEEE
Confidence 357899999999999999999999999987444
No 181
>2jpp_A Translational repressor; RNA recognition, protein/RNA, CSRA, RSMA, shine-dalgarno; NMR {Pseudomonas fluorescens}
Probab=22.90 E-value=1e+02 Score=17.77 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=18.2
Q ss_pred CCcEEEEEEccCCCEEEEEEeC
Q 034926 19 SAHINLKVKGQDGNEVFFRIKR 40 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~ 40 (78)
++.|+|+|.+-.|+.|.+-|..
T Consensus 15 Gd~I~ItVl~v~g~~VrLGI~A 36 (70)
T 2jpp_A 15 GDDITITILGVSGQQVRIGINA 36 (70)
T ss_dssp TTTEEEEEEEEETTEEEEEEEC
T ss_pred CCCEEEEEEEEeCCEEEEEEEC
Confidence 4579999999999998877764
No 182
>3o6q_A Stage II sporulation protein SA; GAF domain, toxin-antitoxin, toxin - antitoxin toxin-antitoxin complex; HET: MSE; 2.50A {Bacillus subtilis}
Probab=22.68 E-value=40 Score=22.43 Aligned_cols=24 Identities=17% Similarity=0.412 Sum_probs=19.9
Q ss_pred chHHHHHHHHHhhcCCCCCeEEEE
Q 034926 42 TQLKKLMNAYCDRQSVELNSIAFL 65 (78)
Q Consensus 42 t~l~KLm~aYc~r~gl~~~s~rFl 65 (78)
+-+++|...|++++.++.+-.+|.
T Consensus 50 ~Gi~~lL~~yaeK~~i~asl~~fs 73 (157)
T 3o6q_A 50 EGIDKLLKTYADKMNLTASLCHYS 73 (157)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEECS
T ss_pred HHHHHHHHHHHHhcCceeeeccCC
Confidence 457899999999999988777663
No 183
>3qoq_A Alginate and motility regulator Z; protein-DNA complex, ribbon-helix-helix; HET: DNA; 3.10A {Pseudomonas aeruginosa}
Probab=22.49 E-value=70 Score=18.22 Aligned_cols=27 Identities=11% Similarity=0.234 Sum_probs=24.2
Q ss_pred EEEEeCCchHHHHHHHHHhhcCCCCCe
Q 034926 35 FFRIKRSTQLKKLMNAYCDRQSVELNS 61 (78)
Q Consensus 35 ~FkIK~~t~l~KLm~aYc~r~gl~~~s 61 (78)
.|.++-...|..-....|+..|.+++.
T Consensus 21 kf~LRlP~eL~~~L~~~A~~~grSlNa 47 (69)
T 3qoq_A 21 KFVVRLPEGMREQIAEVARSHHRSMNS 47 (69)
T ss_dssp EEEEECCTTHHHHHHHHHHHTTCCHHH
T ss_pred ceEEECCHHHHHHHHHHHHHhCCCHHH
Confidence 788899999999999999999998764
No 184
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA binding, signal recognition particle (SRP), translation regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1 PDB: 1e8o_A* 1e8s_A 1ry1_C*
Probab=22.19 E-value=1.4e+02 Score=20.93 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=24.7
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHH
Q 034926 19 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMN 49 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK~~t~l~KLm~ 49 (78)
..+|.|||.| ++..+.|+.....-|++|-.
T Consensus 181 ~g~LvLKvTD-~~~cLkYrT~ka~dl~rle~ 210 (232)
T 1914_A 181 DGNLCIKVTD-DLVCLVYRTDQAQDVKKIEK 210 (232)
T ss_dssp TTEEEEEEEC-SSSEEEEEECBGGGHHHHHH
T ss_pred CceEEEEEee-CCeEEEEECchHHHHHHHHH
Confidence 4689999998 67889999999888877643
No 185
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=22.16 E-value=1.5e+02 Score=18.34 Aligned_cols=56 Identities=11% Similarity=0.143 Sum_probs=41.2
Q ss_pred CCcEEEEEEccCCCEEEEEEe--CCchHHHHHHHHHhhcCCCCCeEEEEE---CCEeeccee
Q 034926 19 SAHINLKVKGQDGNEVFFRIK--RSTQLKKLMNAYCDRQSVELNSIAFLY---VHISAFLAW 75 (78)
Q Consensus 19 ~~~I~lkV~~qdg~~v~FkIK--~~t~l~KLm~aYc~r~gl~~~s~rFlf---dG~rI~~~~ 75 (78)
++.|.|+++-++|..+--.|. ..-.|+-|.++-.+-+- +...-.|-| +|.||...+
T Consensus 12 a~~lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP-~aT~TAFeYEDE~gDRITVRS 72 (106)
T 2npt_A 12 NQVLVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLP-EATTTAFEYEDEDGDRITVRS 72 (106)
T ss_dssp -CCEEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHST-TSCCSEEEEECTTSCEEEECS
T ss_pred cCceEEEEECCCCCccccccCCcccccHHHHHHHHHHhCc-cceeeeeeeccccCCeeEEcc
Confidence 457889999999999988888 56778889888876553 233456777 788887664
No 186
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=21.45 E-value=71 Score=20.30 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=19.8
Q ss_pred cEEEEEEccCCCEEEEEEeCCchH
Q 034926 21 HINLKVKGQDGNEVFFRIKRSTQL 44 (78)
Q Consensus 21 ~I~lkV~~qdg~~v~FkIK~~t~l 44 (78)
.-.|++.......|-||||-+.+-
T Consensus 38 ~~~l~L~N~s~~~VaFKVKTT~p~ 61 (152)
T 1wic_A 38 KTLIVLTNVTKNIVAFKVRTTAPE 61 (152)
T ss_dssp CEEEEEEBCSSSCEEEEEEESCTT
T ss_pred EEEEEEEcCCCCeEEEEEECCCCC
Confidence 467888888888999999987763
No 187
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.12 E-value=1.2e+02 Score=18.95 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=19.7
Q ss_pred cEEEEEEccCCCEEEEEEeCCchH
Q 034926 21 HINLKVKGQDGNEVFFRIKRSTQL 44 (78)
Q Consensus 21 ~I~lkV~~qdg~~v~FkIK~~t~l 44 (78)
.-.|++.......|-||||-+.+-
T Consensus 34 ~~~l~L~N~s~~~VaFKVKTT~p~ 57 (147)
T 2cri_A 34 TTNLKLQNPSDRKVCFKVKTTAPR 57 (147)
T ss_dssp CEEEEEECCSSSCEEEEEEESCTT
T ss_pred EEEEEEECCCCCcEEEEEECCCCc
Confidence 567888888888999999977664
No 188
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=20.83 E-value=53 Score=20.40 Aligned_cols=46 Identities=11% Similarity=0.204 Sum_probs=36.6
Q ss_pred CcEEEEEEc-cCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCeEEEE
Q 034926 20 AHINLKVKG-QDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFL 65 (78)
Q Consensus 20 ~~I~lkV~~-qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s~rFl 65 (78)
..|.+++.- +.+..|.++.|++-++..++..--.++|+....+...
T Consensus 15 ~Rv~F~L~l~p~~ksI~IksKptK~l~evLrPIL~KY~l~l~qv~v~ 61 (104)
T 1wfy_A 15 NRITFQLELVGLERVVRISAKPTKRLQEALQPILAKHGLSLDQVVLH 61 (104)
T ss_dssp SCEEEEEEESSSSSEEEEEECSSSBTTTTTHHHHTTTTCCTTTCCBC
T ss_pred eeEEEEEeccCCCcEEEEEecCCCcHHHHHHHHHHHcCCChhhEEEE
Confidence 478889866 8899999999999999888887777777765555443
No 189
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=20.82 E-value=52 Score=17.68 Aligned_cols=21 Identities=24% Similarity=0.599 Sum_probs=17.9
Q ss_pred EeCCchHHHHHHHHHhhcCCC
Q 034926 38 IKRSTQLKKLMNAYCDRQSVE 58 (78)
Q Consensus 38 IK~~t~l~KLm~aYc~r~gl~ 58 (78)
+.++..|+.+.+.|.++.|++
T Consensus 58 l~~n~~l~~~i~~~~~~~~~~ 78 (78)
T 1t1h_A 58 LTPNYVLKSLIALWCESNGIE 78 (78)
T ss_dssp CEECTTTHHHHHHHHHHSCCC
T ss_pred CccCHHHHHHHHHHHHHcCCC
Confidence 567889999999999988864
No 190
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=20.45 E-value=1.6e+02 Score=18.26 Aligned_cols=33 Identities=9% Similarity=0.348 Sum_probs=28.1
Q ss_pred cCCCEEEEEEeCCchHHHHHHHHHhhcCCCCCe
Q 034926 29 QDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNS 61 (78)
Q Consensus 29 qdg~~v~FkIK~~t~l~KLm~aYc~r~gl~~~s 61 (78)
+.|+.+.+++.+...+..=..++|++.|+....
T Consensus 7 ~~gr~~~lrl~~Gedl~~~i~~~~~~~~i~~a~ 39 (146)
T 2h6l_A 7 EVGKGFLLRLDYGKDLVRQIEEFLEEKGIHAAH 39 (146)
T ss_dssp ECCEEEEEECCTTSBHHHHHHHHHHHHTCCSEE
T ss_pred cCCCEEEEEECCCCCHHHHHHHHHHHcCCCEEE
Confidence 356788999999999999999999999877444
No 191
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=20.15 E-value=86 Score=15.80 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEEC
Q 034926 44 LKKLMNAYCDRQSVELNSIAFLYV 67 (78)
Q Consensus 44 l~KLm~aYc~r~gl~~~s~rFlfd 67 (78)
.+.|.+++++..|++...+...|.
T Consensus 20 ~~~i~~~l~~~lg~~~~~v~V~i~ 43 (61)
T 2opa_A 20 VEKVTEAVKETTGASEEKIVVFIE 43 (61)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEEE
T ss_pred HHHHHHHHHHHhCcCcCeEEEEEE
Confidence 455667777889999888776654
No 192
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=20.08 E-value=90 Score=16.73 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEEC
Q 034926 44 LKKLMNAYCDRQSVELNSIAFLYV 67 (78)
Q Consensus 44 l~KLm~aYc~r~gl~~~s~rFlfd 67 (78)
.+.|.+++++..|++.+.+...|.
T Consensus 21 ~~~it~~l~~~lg~p~~~v~V~i~ 44 (72)
T 3mb2_A 21 ARALSAAAAAAFDVPLAEVRLIIQ 44 (72)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEEE
T ss_pred HHHHHHHHHHHhCCCcccEEEEEE
Confidence 445667777889999888876654
Done!