Query 034929
Match_columns 78
No_of_seqs 133 out of 558
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 07:46:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034929.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034929hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03012 Camelliol C synthase 99.9 1.8E-28 4E-33 200.3 4.7 70 6-75 681-759 (759)
2 PLN02993 lupeol synthase 99.9 3.6E-27 7.8E-32 192.8 4.5 70 6-75 681-759 (763)
3 TIGR01507 hopene_cyclase squal 99.9 4.6E-24 9.9E-29 171.2 3.8 68 4-71 557-632 (635)
4 TIGR03463 osq_cycl 2,3-oxidosq 99.9 3.2E-24 6.9E-29 172.0 2.8 63 6-68 565-634 (634)
5 TIGR01787 squalene_cyclas squa 99.9 1.7E-23 3.8E-28 167.3 2.6 67 4-70 547-621 (621)
6 KOG0497 Oxidosqualene-lanoster 99.8 2.7E-22 5.8E-27 163.1 2.0 71 5-75 679-758 (760)
7 cd02892 SQCY_1 Squalene cyclas 99.8 3.5E-21 7.6E-26 153.5 2.2 64 5-68 564-634 (634)
8 cd02889 SQCY Squalene cyclase 99.4 1.4E-13 3E-18 100.3 2.2 63 6-68 279-348 (348)
9 COG1657 SqhC Squalene cyclase 99.2 8.2E-13 1.8E-17 105.3 -2.6 68 6-73 441-515 (517)
10 PF13243 Prenyltrans_1: Prenyl 98.0 4E-06 8.8E-11 52.2 2.1 36 4-39 25-68 (109)
11 PLN03012 Camelliol C synthase 97.8 1.6E-05 3.4E-10 66.4 2.9 60 7-68 620-693 (759)
12 cd02897 A2M_2 Proteins similar 97.5 3.2E-05 7E-10 56.2 1.0 49 4-68 237-292 (292)
13 PLN02993 lupeol synthase 97.3 0.00015 3.3E-09 60.6 3.1 60 7-68 620-693 (763)
14 cd00688 ISOPREN_C2_like This g 97.3 0.00019 4.1E-09 49.0 2.3 56 4-68 237-300 (300)
15 PF09492 Pec_lyase: Pectic aci 97.1 0.00038 8.3E-09 52.6 2.6 40 16-55 61-101 (289)
16 PF13249 Prenyltrans_2: Prenyl 97.0 6.5E-05 1.4E-09 46.5 -1.8 21 16-36 91-111 (113)
17 TIGR03463 osq_cycl 2,3-oxidosq 97.0 0.0006 1.3E-08 55.6 3.0 59 7-67 507-576 (634)
18 cd02897 A2M_2 Proteins similar 96.8 0.0013 2.8E-08 47.8 3.2 51 15-67 100-152 (292)
19 TIGR02474 pec_lyase pectate ly 96.7 0.0011 2.5E-08 50.1 2.7 29 16-44 66-94 (290)
20 cd02896 complement_C3_C4_C5 Pr 96.6 0.00073 1.6E-08 49.7 1.0 33 5-37 245-282 (297)
21 PF13243 Prenyltrans_1: Prenyl 96.4 0.00078 1.7E-08 41.8 0.0 21 19-39 1-21 (109)
22 cd02896 complement_C3_C4_C5 Pr 96.3 0.0016 3.4E-08 48.0 1.0 53 15-69 101-158 (297)
23 PF13249 Prenyltrans_2: Prenyl 96.0 0.0019 4.1E-08 39.9 0.1 32 7-38 25-63 (113)
24 TIGR01507 hopene_cyclase squal 95.9 0.0042 9.2E-08 50.8 1.7 52 15-68 517-571 (635)
25 cd02889 SQCY Squalene cyclase 95.7 0.0057 1.2E-07 44.6 1.8 21 19-39 1-21 (348)
26 PF07678 A2M_comp: A-macroglob 95.7 0.0026 5.7E-08 45.7 -0.3 26 15-40 47-72 (246)
27 PF00432 Prenyltrans: Prenyltr 95.6 0.011 2.3E-07 32.3 2.2 21 18-38 2-22 (44)
28 TIGR01787 squalene_cyclas squa 95.6 0.016 3.6E-07 47.2 4.2 52 7-68 440-501 (621)
29 TIGR01577 oligosac_amyl oligos 95.5 0.01 2.2E-07 47.9 2.6 66 4-71 299-368 (616)
30 cd02891 A2M_like Proteins simi 95.1 0.024 5.1E-07 40.1 3.0 52 16-69 100-153 (282)
31 cd00688 ISOPREN_C2_like This g 94.8 0.025 5.4E-07 38.5 2.5 33 4-36 139-179 (300)
32 PF07678 A2M_comp: A-macroglob 94.4 0.024 5.3E-07 40.7 1.8 46 8-69 195-245 (246)
33 cd02892 SQCY_1 Squalene cyclas 94.1 0.026 5.7E-07 45.7 1.5 33 7-39 506-547 (634)
34 KOG0497 Oxidosqualene-lanoster 93.9 0.042 9E-07 46.3 2.4 28 14-41 635-662 (760)
35 PLN02592 ent-copalyl diphospha 93.9 0.034 7.3E-07 47.1 1.9 33 7-39 99-137 (800)
36 PLN02279 ent-kaur-16-ene synth 93.7 0.037 8.1E-07 46.7 1.8 33 7-39 57-95 (784)
37 cd02891 A2M_like Proteins simi 92.9 0.2 4.4E-06 35.3 4.3 47 16-70 48-94 (282)
38 cd02890 PTase Protein prenyltr 92.7 0.061 1.3E-06 38.8 1.4 31 4-34 174-211 (286)
39 cd02894 GGTase-II Geranylgeran 92.3 0.061 1.3E-06 39.4 1.0 33 4-36 176-215 (287)
40 COG3387 SGA1 Glucoamylase and 86.8 0.17 3.7E-06 41.5 -0.3 60 4-63 289-351 (612)
41 TIGR01535 glucan_glucosid gluc 86.7 0.23 5.1E-06 41.1 0.4 63 4-70 299-365 (648)
42 TIGR02474 pec_lyase pectate ly 84.7 0.68 1.5E-05 35.2 2.0 21 16-36 136-156 (290)
43 cd02895 GGTase-I Geranylgerany 83.7 0.68 1.5E-05 34.6 1.6 45 4-50 193-247 (307)
44 COG1657 SqhC Squalene cyclase 82.2 0.7 1.5E-05 37.7 1.2 22 16-37 351-372 (517)
45 KOG0367 Protein geranylgeranyl 80.2 0.93 2E-05 35.3 1.3 21 16-36 227-247 (347)
46 PLN03201 RAB geranylgeranyl tr 79.4 1.4 3E-05 33.1 2.0 45 4-50 180-231 (316)
47 cd02890 PTase Protein prenyltr 78.3 1.8 3.9E-05 31.1 2.2 23 16-38 145-167 (286)
48 PF14852 Fis1_TPR_N: Fis1 N-te 73.6 1.4 3.1E-05 23.5 0.5 24 7-30 6-31 (35)
49 cd02893 FTase Protein farnesyl 72.9 2.2 4.7E-05 31.7 1.5 32 5-36 175-214 (299)
50 cd02894 GGTase-II Geranylgeran 71.9 3.3 7.1E-05 30.3 2.2 24 16-39 147-170 (287)
51 cd00194 UBA Ubiquitin Associat 65.6 1.7 3.7E-05 22.4 -0.3 28 1-28 11-38 (38)
52 PF07470 Glyco_hydro_88: Glyco 56.5 18 0.00038 26.7 3.6 54 17-71 275-335 (336)
53 PLN03201 RAB geranylgeranyl tr 56.3 11 0.00024 28.2 2.6 23 16-38 151-173 (316)
54 PF07221 GlcNAc_2-epim: N-acyl 55.4 17 0.00037 26.7 3.4 50 17-69 43-94 (346)
55 PLN02710 farnesyltranstransfer 54.0 7 0.00015 31.3 1.2 33 16-50 238-270 (439)
56 PF14836 Ubiquitin_3: Ubiquiti 54.0 2 4.3E-05 27.5 -1.5 21 17-37 67-87 (88)
57 cd02893 FTase Protein farnesyl 51.9 12 0.00027 27.7 2.2 23 15-37 144-166 (299)
58 cd02895 GGTase-I Geranylgerany 51.0 15 0.00032 27.4 2.5 23 17-39 165-187 (307)
59 PF09492 Pec_lyase: Pectic aci 40.8 15 0.00033 27.9 1.2 25 16-40 131-159 (289)
60 cd04794 euk_LANCL eukaryotic L 39.9 25 0.00055 26.0 2.2 23 17-39 188-210 (343)
61 KOG1366 Alpha-macroglobulin [P 39.7 18 0.00039 33.1 1.6 25 15-39 1022-1046(1436)
62 COG1689 Uncharacterized protei 38.6 22 0.00048 26.9 1.7 28 17-44 228-255 (274)
63 COG2942 N-acyl-D-glucosamine 2 38.1 44 0.00096 26.6 3.4 51 17-70 78-130 (388)
64 PF05592 Bac_rhamnosid: Bacter 34.3 63 0.0014 25.1 3.7 28 15-42 167-194 (509)
65 PF07849 DUF1641: Protein of u 34.1 36 0.00079 18.5 1.8 16 14-29 20-35 (42)
66 PF06376 DUF1070: Protein of u 33.6 34 0.00073 18.3 1.5 13 15-27 10-22 (34)
67 COG5029 CAL1 Prenyltransferase 32.4 30 0.00066 27.1 1.7 30 19-50 225-254 (342)
68 KOG3760 Heparan sulfate-glucur 31.5 31 0.00068 28.3 1.7 21 17-37 380-400 (594)
69 PF09282 Mago-bind: Mago bindi 30.7 3.7 8.1E-05 21.1 -2.4 14 26-39 5-18 (27)
70 PF01122 Cobalamin_bind: Eukar 29.2 43 0.00094 25.9 2.0 27 18-44 216-242 (326)
71 COG5207 UBP14 Isopeptidase T [ 25.1 6.6 0.00014 33.0 -3.2 41 2-44 632-672 (749)
72 cd00249 AGE AGE domain; N-acyl 24.3 1.1E+02 0.0024 22.4 3.4 53 17-72 76-131 (384)
73 PRK00960 seryl-tRNA synthetase 24.2 49 0.0011 27.1 1.6 36 18-53 477-516 (517)
74 PF09248 DUF1965: Domain of un 23.2 23 0.00049 22.0 -0.4 41 2-44 19-71 (74)
75 smart00165 UBA Ubiquitin assoc 23.0 19 0.00041 18.2 -0.7 10 18-27 28-37 (37)
76 PF01657 Stress-antifung: Salt 22.7 36 0.00078 21.0 0.5 14 45-58 93-106 (106)
77 TIGR00601 rad23 UV excision re 22.6 24 0.00051 27.7 -0.4 29 1-29 166-194 (378)
78 KOG0011 Nucleotide excision re 22.1 23 0.00049 27.8 -0.6 29 1-29 145-173 (340)
79 PRK13258 7-cyano-7-deazaguanin 21.8 59 0.0013 21.4 1.4 38 40-77 30-68 (114)
80 PF11146 DUF2905: Protein of u 21.2 29 0.00063 20.9 -0.2 23 42-64 27-49 (64)
81 KOG3364 Membrane protein invol 20.4 42 0.00091 23.5 0.5 25 7-31 37-63 (149)
82 PF13122 DUF3977: Protein of u 20.4 37 0.0008 21.2 0.2 29 24-52 11-43 (77)
83 PF00627 UBA: UBA/TS-N domain; 20.2 15 0.00033 18.9 -1.4 9 18-26 29-37 (37)
No 1
>PLN03012 Camelliol C synthase
Probab=99.95 E-value=1.8e-28 Score=200.30 Aligned_cols=70 Identities=56% Similarity=1.030 Sum_probs=65.2
Q ss_pred cccccccC-------C--CCchHHHHHHHHHHhcccCCCCCCcceeceeccceeccCCCchhhHhHHHHHHHHHHhcCC
Q 034929 6 FNSCWTDG-------K--RSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCMLHYPTYRNIFPMWALAEYRSKFQSP 75 (78)
Q Consensus 6 ~QTAWAl~-------~--~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y~~~~~~~ 75 (78)
+||||||+ + +.++|+|||+|||++|++||+|+|+++||+||++|||+||+||++|||||||+|++++.+|
T Consensus 681 ~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~~~G~F~~~~~i~Y~~Yr~~FPl~ALg~Y~~~~~~~ 759 (759)
T PLN03012 681 VQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQEATGAFLKNCLLHYAAYRNIFPLWALAEYRARVPLP 759 (759)
T ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCceeeeeeccceEEecCccchHHHHHHHHHHHHhccCC
Confidence 89999996 2 2358999999999999999999999999999999999999999999999999999998775
No 2
>PLN02993 lupeol synthase
Probab=99.93 E-value=3.6e-27 Score=192.82 Aligned_cols=70 Identities=53% Similarity=0.925 Sum_probs=64.3
Q ss_pred cccccccC-------C--CCchHHHHHHHHHHhcccCCCCCCcceeceeccceeccCCCchhhHhHHHHHHHHHHhcCC
Q 034929 6 FNSCWTDG-------K--RSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCMLHYPTYRNIFPMWALAEYRSKFQSP 75 (78)
Q Consensus 6 ~QTAWAl~-------~--~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y~~~~~~~ 75 (78)
+||||||+ + +.++|+|||+||+++|++||+|+|+++||+||++|||+||+||++|||||||+|++..+..
T Consensus 681 ~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~W~q~~~~G~F~~~~~i~Y~~Yr~~FPl~ALg~Y~~~~~~~ 759 (763)
T PLN02993 681 VQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLENGDFPQQEILGAFMNTCMLHYATYRNTFPLWALAEYRKAAFIT 759 (763)
T ss_pred hhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCCcceeceECccceeccCccchHHHHHHHHHHHHhhhhh
Confidence 89999996 2 2368999999999999999999999999999999999999999999999999999976643
No 3
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.89 E-value=4.6e-24 Score=171.24 Aligned_cols=68 Identities=29% Similarity=0.556 Sum_probs=63.5
Q ss_pred CCcccccccC-------CCCchHHHHHHHHHHhcccCCCCCCcceece-eccceeccCCCchhhHhHHHHHHHHHH
Q 034929 4 DGFNSCWTDG-------KRSYSSSPCCKLLINSQLEDGDFPQQELTGA-FMGNCMLHYPTYRNIFPMWALAEYRSK 71 (78)
Q Consensus 4 ~~~QTAWAl~-------~~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~-f~~~~yi~Y~~Yr~~fPl~ALg~Y~~~ 71 (78)
|.+||||||+ .++++|+||++||+++|++||+|+|+++||+ ||++|||+||+||++|||||||+|++.
T Consensus 557 ~~s~TA~AL~AL~~ag~~~~~~I~rav~~L~~~Q~~dG~W~e~~~~g~gfp~~~yi~Y~~Y~~~fpl~ALg~y~~~ 632 (635)
T TIGR01507 557 TASQTAWALIALIAAGRAESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYHMYRHVFPLLALARYKQA 632 (635)
T ss_pred cHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCCCCCCCcccccCcccceeeecccchhhHhHHHHHHHHHHh
Confidence 4469999996 4578999999999999999999999999999 999999999999999999999999983
No 4
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.89 E-value=3.2e-24 Score=172.00 Aligned_cols=63 Identities=32% Similarity=0.580 Sum_probs=60.0
Q ss_pred cccccccC-------CCCchHHHHHHHHHHhcccCCCCCCcceeceeccceeccCCCchhhHhHHHHHHH
Q 034929 6 FNSCWTDG-------KRSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCMLHYPTYRNIFPMWALAEY 68 (78)
Q Consensus 6 ~QTAWAl~-------~~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y 68 (78)
+||||||+ .++++|+|||+||+++|++||+|+++++||+||++|||+||+||++|||||||+|
T Consensus 565 ~~TA~Al~aL~~~g~~~~~~i~rgi~~L~~~Q~~dG~W~~~~~~G~f~~~~~l~Y~~Y~~~fpl~ALg~y 634 (634)
T TIGR03463 565 VMTSWALLALAEAGEGGHDAVQRGVAWLRSRQQEDGRWPREPINGVFFGTAMLDYDLYLRYFPTWALAVC 634 (634)
T ss_pred HHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhCCCCCCCCCCceeeeeCcceeEecCccchHhHHHHhhcC
Confidence 79999996 4568999999999999999999999999999999999999999999999999987
No 5
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.87 E-value=1.7e-23 Score=167.34 Aligned_cols=67 Identities=40% Similarity=0.712 Sum_probs=61.7
Q ss_pred CCcccccccC-------CCCchHHHHHHHHHHhcccCCCCCCcceece-eccceeccCCCchhhHhHHHHHHHHH
Q 034929 4 DGFNSCWTDG-------KRSYSSSPCCKLLINSQLEDGDFPQQELTGA-FMGNCMLHYPTYRNIFPMWALAEYRS 70 (78)
Q Consensus 4 ~~~QTAWAl~-------~~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~-f~~~~yi~Y~~Yr~~fPl~ALg~Y~~ 70 (78)
|.+||||||+ .+.++|+||++||+++|++||+|+|++++|+ ||++|||+||+||++|||||||+|++
T Consensus 547 ~~s~Ta~AL~AL~~ag~~~~~ai~rgv~~L~~~Q~~dG~w~~~~~~g~~~p~~~~i~Y~~Y~~~fpl~ALg~y~~ 621 (621)
T TIGR01787 547 TPSQTGWALMALIAAGEADSEAIERGVKYLLETQRPDGDWPQEYITGVGFPKNFYLKYTNYRNIFPLWALGRYRQ 621 (621)
T ss_pred CHHHHHHHHHHHHHcCccchHHHHHHHHHHHHhCCCCCCCCCccccCCCCcccceecccccchhhHHHHHHHHhC
Confidence 4579999996 3457899999999999999999999999999 78999999999999999999999974
No 6
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.84 E-value=2.7e-22 Score=163.08 Aligned_cols=71 Identities=52% Similarity=0.978 Sum_probs=65.2
Q ss_pred CcccccccC-------CCC--chHHHHHHHHHHhcccCCCCCCcceeceeccceeccCCCchhhHhHHHHHHHHHHhcCC
Q 034929 5 GFNSCWTDG-------KRS--YSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCMLHYPTYRNIFPMWALAEYRSKFQSP 75 (78)
Q Consensus 5 ~~QTAWAl~-------~~~--~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y~~~~~~~ 75 (78)
-+||+||+| ++. -|++||++.|+++|.+||+|||+++.|+|+++|+|+|+.|||+|||||||+|++.+..+
T Consensus 679 vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~nGdfpqq~i~g~f~~~~~~~y~~yr~~F~~waL~~y~~~~~~~ 758 (760)
T KOG0497|consen 679 VVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLENGDFPQQEIEGVFNKNCMIHYPTYRNIFPIWALGEYRKAYRLR 758 (760)
T ss_pred chhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccccCCcchhHHHHHhhhhhhhccchhhhhccHHHHHHHHHHhhhc
Confidence 479999996 333 49999999999999999999999999999999999999999999999999999987654
No 7
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.82 E-value=3.5e-21 Score=153.48 Aligned_cols=64 Identities=41% Similarity=0.729 Sum_probs=58.3
Q ss_pred CcccccccC-------CCCchHHHHHHHHHHhcccCCCCCCcceeceeccceeccCCCchhhHhHHHHHHH
Q 034929 5 GFNSCWTDG-------KRSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCMLHYPTYRNIFPMWALAEY 68 (78)
Q Consensus 5 ~~QTAWAl~-------~~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y 68 (78)
.+||||||+ .++++|+||++||+++|++||+|+++++||+|+++|||+||+||++|||||||+|
T Consensus 564 ~~~TA~AllaLl~~g~~~~~~i~r~i~wL~~~Q~~~G~w~~~~~~g~~~~~~~~~y~~Y~~~fpl~ALg~y 634 (634)
T cd02892 564 VVQTAWALLALMAAGEPDSEAVERGIKYLLNTQLPDGDWPQEEITGVGFPNFYIRYHNYRNYFPLWALGRY 634 (634)
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHcCCCCCCCCCcccccccCCCeeeccCchhhHhHHHHhhcC
Confidence 378999985 4557899999999999999999999999999555699999999999999999987
No 8
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.38 E-value=1.4e-13 Score=100.30 Aligned_cols=63 Identities=43% Similarity=0.823 Sum_probs=58.2
Q ss_pred cccccccC-------CCCchHHHHHHHHHHhcccCCCCCCcceeceeccceeccCCCchhhHhHHHHHHH
Q 034929 6 FNSCWTDG-------KRSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCMLHYPTYRNIFPMWALAEY 68 (78)
Q Consensus 6 ~QTAWAl~-------~~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y 68 (78)
..|||||. .+.+.++|+++||++.|++||.|..+..+|++.+.|+++|++|+++|||+|||+|
T Consensus 279 ~~Ta~al~aL~~~g~~~~~~v~~a~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (348)
T cd02889 279 VQTAWALLALMAAGEPDSEAVKRGVKYLLNTQQEDGDWPQEEITGVFFKNFYIRYHNYRNYFPLWALGRY 348 (348)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCCCCcCCceeeeeecceeeeccCccchHhHHHHhhcC
Confidence 68999985 3467899999999999999999999999999889999999999999999999976
No 9
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=99.20 E-value=8.2e-13 Score=105.27 Aligned_cols=68 Identities=28% Similarity=0.528 Sum_probs=62.6
Q ss_pred cccccccC-------CCCchHHHHHHHHHHhcccCCCCCCcceeceeccceeccCCCchhhHhHHHHHHHHHHhc
Q 034929 6 FNSCWTDG-------KRSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCMLHYPTYRNIFPMWALAEYRSKFQ 73 (78)
Q Consensus 6 ~QTAWAl~-------~~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y~~~~~ 73 (78)
+||+||+. ++.++|++|+++|++.|+++|.|.+.+.+|.|+.+|+|.||.|+.+||+.+||+|-+...
T Consensus 441 ~~~~wal~~~~~a~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~eg~~~~~~~~~~~~~~~~~p~~~lg~y~~~~~ 515 (517)
T COG1657 441 VQTNWALIALLTALEPNQEAIKPGINLLVSDQEPDGSWREAEREGGFNCNFAIGYPYYLAYFPIIALGRYGGQYR 515 (517)
T ss_pred cchhHHHHHHHHhcccchhhhcccccccccCcCCCCccccceecccCCCCcceeeeeEEeecCchhhcccccccc
Confidence 69999985 566789999999999999999999999999999999999999999999999999976543
No 10
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=97.99 E-value=4e-06 Score=52.21 Aligned_cols=36 Identities=17% Similarity=0.068 Sum_probs=17.1
Q ss_pred CCcccccccC--------CCCchHHHHHHHHHHhcccCCCCCCc
Q 034929 4 DGFNSCWTDG--------KRSYSSSPCCKLLINSQLEDGDFPQQ 39 (78)
Q Consensus 4 ~~~QTAWAl~--------~~~~~I~rGi~~Li~~Q~~dG~W~q~ 39 (78)
|.+.|+|++. ...++|+||++||++.|++||.|...
T Consensus 25 ~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~ 68 (109)
T PF13243_consen 25 DVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYS 68 (109)
T ss_dssp ----------------TS-SSBSSHHHHHHHHH---TTS--S-T
T ss_pred cccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCc
Confidence 4577888875 35689999999999999999999744
No 11
>PLN03012 Camelliol C synthase
Probab=97.78 E-value=1.6e-05 Score=66.37 Aligned_cols=60 Identities=7% Similarity=0.097 Sum_probs=43.4
Q ss_pred ccccccC---------CCCchHHHHHHHHHHhcccCCCCCCcceeceeccceecc-----CCCchhhHhHHHHHHH
Q 034929 7 NSCWTDG---------KRSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCMLH-----YPTYRNIFPMWALAEY 68 (78)
Q Consensus 7 QTAWAl~---------~~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi~-----Y~~Yr~~fPl~ALg~Y 68 (78)
.|+|||. +++++|+|||+||++.|++||.|.+.. ++....-|+. =+.+.-.|.|+||-..
T Consensus 620 gT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~--~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~a 693 (759)
T PLN03012 620 GTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESY--LSCPKKIYIAQEGEISNLVQTAWALMGLIHA 693 (759)
T ss_pred HHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCC--CCCCCccccCCCCCCCcHHHHHHHHHHHHHc
Confidence 7899884 345899999999999999999997765 2222223443 2336677999998754
No 12
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=97.51 E-value=3.2e-05 Score=56.15 Aligned_cols=49 Identities=18% Similarity=0.187 Sum_probs=37.7
Q ss_pred CCcccccccC-----C--CCchHHHHHHHHHHhcccCCCCCCcceeceeccceeccCCCchhhHhHHHHHHH
Q 034929 4 DGFNSCWTDG-----K--RSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCMLHYPTYRNIFPMWALAEY 68 (78)
Q Consensus 4 ~~~QTAWAl~-----~--~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y 68 (78)
|-.+|||||+ . +.+.+.++|+||++.|+++|.|.-. =..++.|.||++|
T Consensus 237 ~ve~TAyaLlall~~~~~~~~~~~~~v~WL~~~q~~~Ggf~sT----------------Qdt~~al~AL~~y 292 (292)
T cd02897 237 EVEMTAYALLALLSAGGEDLAEALPIVKWLAKQRNSLGGFSST----------------QDTVVALQALAKY 292 (292)
T ss_pred hHHHHHHHHHHHHHcCCccHhHHHHHHHHHHHcCCCCCCcccH----------------HHHHHHHHHHHcC
Confidence 3457999996 2 4578999999999999999999522 2356788888876
No 13
>PLN02993 lupeol synthase
Probab=97.34 E-value=0.00015 Score=60.59 Aligned_cols=60 Identities=12% Similarity=0.148 Sum_probs=42.2
Q ss_pred ccccccC---------CCCchHHHHHHHHHHhcccCCCCCCcceeceeccceecc-----CCCchhhHhHHHHHHH
Q 034929 7 NSCWTDG---------KRSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCMLH-----YPTYRNIFPMWALAEY 68 (78)
Q Consensus 7 QTAWAl~---------~~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi~-----Y~~Yr~~fPl~ALg~Y 68 (78)
.|++||. .+.+.|+|||+||++.|++||.|.+.. ++....-|.. =+.|.-.|.|+||...
T Consensus 620 gT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~--~S~~~~~y~~~~~~~St~~qTAwAllaL~~a 693 (763)
T PLN02993 620 ATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESY--LSCPEQRYIPLEGNRSNLVQTAWAMMGLIHA 693 (763)
T ss_pred HHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCc--CcCCCcccccCCCCCCchhhHHHHHHHHHHc
Confidence 5778773 223799999999999999999997654 1211122332 2347888999999865
No 14
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=97.25 E-value=0.00019 Score=48.97 Aligned_cols=56 Identities=29% Similarity=0.422 Sum_probs=43.4
Q ss_pred CCcccccccC------C--CCchHHHHHHHHHHhcccCCCCCCcceeceeccceeccCCCchhhHhHHHHHHH
Q 034929 4 DGFNSCWTDG------K--RSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCMLHYPTYRNIFPMWALAEY 68 (78)
Q Consensus 4 ~~~QTAWAl~------~--~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y 68 (78)
|...|+|++. . +.+.++++++||++.|.++|.|..+.. ..++.|...|.|.||+.|
T Consensus 237 ~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~L~~~q~~~G~w~~~~~---------~~~~~~~t~~al~aL~~~ 300 (300)
T cd00688 237 DSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPG---------KSYDTQHTVFALLALSLY 300 (300)
T ss_pred chHHHHHHHHHHHHHhhhcCcccHHHHHHHHHhccCCCCCcCcCCC---------CCCcchhhHHHHHHHhcC
Confidence 4456777763 2 467899999999999999999965442 466788889999999864
No 15
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=97.09 E-value=0.00038 Score=52.59 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=25.7
Q ss_pred CchHHHHHHHHHHhcccCCCCCCcceece-eccceeccCCC
Q 034929 16 SYSSSPCCKLLINSQLEDGDFPQQELTGA-FMGNCMLHYPT 55 (78)
Q Consensus 16 ~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~-f~~~~yi~Y~~ 55 (78)
.+++.||++||++.|-++|.|||-++.-. |..++-++...
T Consensus 61 ~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDda 101 (289)
T PF09492_consen 61 REAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDA 101 (289)
T ss_dssp HHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGH
T ss_pred HHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHH
Confidence 47899999999999999999999865433 54444444333
No 16
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=97.01 E-value=6.5e-05 Score=46.54 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=18.7
Q ss_pred CchHHHHHHHHHHhcccCCCC
Q 034929 16 SYSSSPCCKLLINSQLEDGDF 36 (78)
Q Consensus 16 ~~~I~rGi~~Li~~Q~~dG~W 36 (78)
.+.++|+++||++.|++||.|
T Consensus 91 ~~~~~~a~~~l~~~Q~~dGg~ 111 (113)
T PF13249_consen 91 EEAVRKAVDWLLSCQNPDGGW 111 (113)
T ss_dssp HTTHCCHHHHHHHTB-TTSSB
T ss_pred cHHHHHHHHHHHHhcCCCCCC
Confidence 378999999999999999998
No 17
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=96.98 E-value=0.0006 Score=55.57 Aligned_cols=59 Identities=14% Similarity=0.077 Sum_probs=39.1
Q ss_pred ccccccC--------CCCchHHHHHHHHHHhcccCCCCCCcceeceeccceec---cCCCchhhHhHHHHHH
Q 034929 7 NSCWTDG--------KRSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCML---HYPTYRNIFPMWALAE 67 (78)
Q Consensus 7 QTAWAl~--------~~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi---~Y~~Yr~~fPl~ALg~ 67 (78)
-|+||+. .+++.|+||++||++.|++||.|.+..... + ..-|+ .-+.|.-.+.|+||..
T Consensus 507 ~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~-~-~~~y~~~~~S~~~~TA~Al~aL~~ 576 (634)
T TIGR03463 507 GTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESC-L-QARYVEGKQSQAVMTSWALLALAE 576 (634)
T ss_pred HHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCcc-c-cccccCCCCCcHHHHHHHHHHHHH
Confidence 4788874 346789999999999999999996543111 1 11122 1234555578888865
No 18
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=96.79 E-value=0.0013 Score=47.78 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=32.5
Q ss_pred CCchHHHHHHHHHHhcccCCCCCCcceeceeccce--eccCCCchhhHhHHHHHH
Q 034929 15 RSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNC--MLHYPTYRNIFPMWALAE 67 (78)
Q Consensus 15 ~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~--yi~Y~~Yr~~fPl~ALg~ 67 (78)
+...|+||++||+++|++||.|.+... .+.+.. .+.-....-.|.+.||++
T Consensus 100 ~~~~i~ra~~wL~~~Q~~dG~f~~~~~--~~~~~~~~~~~~~~~~TA~vl~aL~~ 152 (292)
T cd02897 100 DENVLQQALTWLSSHQKSNGCFREVGR--VFHKAMQGGVDDEVALTAYVLIALLE 152 (292)
T ss_pred CHHHHHHHHHHHHHhcCCCCCCCCCCc--ccChhhcCCCCCCcchHHHHHHHHHh
Confidence 346899999999999999999964321 111100 011223456678888865
No 19
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=96.75 E-value=0.0011 Score=50.10 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=25.4
Q ss_pred CchHHHHHHHHHHhcccCCCCCCcceece
Q 034929 16 SYSSSPCCKLLINSQLEDGDFPQQELTGA 44 (78)
Q Consensus 16 ~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~ 44 (78)
.+++.|||+||++.|.+||.|||-++...
T Consensus 66 ~~A~~rgld~LL~aQypnGGWPQf~p~~~ 94 (290)
T TIGR02474 66 RDAARKGIEYLLKAQYPNGGWPQFYPLKG 94 (290)
T ss_pred HHHHHHHHHHHHhhhCCCCCcCcccCCcC
Confidence 57899999999999999999998876443
No 20
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=96.63 E-value=0.00073 Score=49.69 Aligned_cols=33 Identities=12% Similarity=0.076 Sum_probs=28.1
Q ss_pred CcccccccC-----CCCchHHHHHHHHHHhcccCCCCC
Q 034929 5 GFNSCWTDG-----KRSYSSSPCCKLLINSQLEDGDFP 37 (78)
Q Consensus 5 ~~QTAWAl~-----~~~~~I~rGi~~Li~~Q~~dG~W~ 37 (78)
-.+|||||+ .+.+.+.++|+||+++|+.+|.|.
T Consensus 245 vE~TAYALLall~~~~~~~a~~iv~WL~~qr~~~Ggf~ 282 (297)
T cd02896 245 VETTAYALLALLKLGDIEYANPIARWLTEQRNYGGGFG 282 (297)
T ss_pred hHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCCee
Confidence 348999997 455689999999999999999995
No 21
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=96.43 E-value=0.00078 Score=41.77 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcccCCCCCCc
Q 034929 19 SSPCCKLLINSQLEDGDFPQQ 39 (78)
Q Consensus 19 I~rGi~~Li~~Q~~dG~W~q~ 39 (78)
|+++++||++.|++||.|.-+
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~ 21 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYN 21 (109)
T ss_dssp ---------------------
T ss_pred Ccccccccccccccccccccc
Confidence 689999999999999999533
No 22
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=96.30 E-value=0.0016 Score=47.95 Aligned_cols=53 Identities=21% Similarity=0.165 Sum_probs=34.5
Q ss_pred CCchHHHHHHHHHHhcccCCCCCCcceeceeccceec--c---CCCchhhHhHHHHHHHH
Q 034929 15 RSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCML--H---YPTYRNIFPMWALAEYR 69 (78)
Q Consensus 15 ~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi--~---Y~~Yr~~fPl~ALg~Y~ 69 (78)
+.+.|+||++||+++|++||.|.+..+ ++++...- . -..---.|-+.||++..
T Consensus 101 ~~~~l~~a~~wL~~~Q~~dG~f~e~~~--~~~~~m~gg~~~~~~~~~lTA~vl~aL~~~~ 158 (297)
T cd02896 101 DQNVICGSVNWLISNQKPDGSFQEPSP--VIHREMTGGVEGSEGDVSLTAFVLIALQEAR 158 (297)
T ss_pred CHHHHHHHHHHHHhcCCCCCeeCCCCC--ccChhccCCccccCCCccchHHHHHHHHhhh
Confidence 456899999999999999999976432 12221111 0 12223458888988864
No 23
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=95.99 E-value=0.0019 Score=39.87 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=23.5
Q ss_pred ccccccC-----CCCchHHHH--HHHHHHhcccCCCCCC
Q 034929 7 NSCWTDG-----KRSYSSSPC--CKLLINSQLEDGDFPQ 38 (78)
Q Consensus 7 QTAWAl~-----~~~~~I~rG--i~~Li~~Q~~dG~W~q 38 (78)
-|++|+. ...+..+|. ++||.+.|++||.|..
T Consensus 25 ~T~~al~aL~~~g~~~~~~~~~~~~~L~~~q~~dGg~~~ 63 (113)
T PF13249_consen 25 DTAFALLALAALGEEPDRDRAAAVEWLLSQQNPDGGWGS 63 (113)
T ss_dssp HHHHHHHHHHHHTSHHCHHHHHHHHHHHHHB-TTSGBBS
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHHHHhCCCCCCccC
Confidence 4788875 233346677 9999999999999954
No 24
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=95.89 E-value=0.0042 Score=50.76 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=33.2
Q ss_pred CCchHHHHHHHHHHhcccCCCCCCcceec---eeccceeccCCCchhhHhHHHHHHH
Q 034929 15 RSYSSSPCCKLLINSQLEDGDFPQQELTG---AFMGNCMLHYPTYRNIFPMWALAEY 68 (78)
Q Consensus 15 ~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG---~f~~~~yi~Y~~Yr~~fPl~ALg~Y 68 (78)
.++.|+||++||++.|++||.|.+...+- .+.+.- .-+.+.-.|.|+||-..
T Consensus 517 ~~~~i~rAv~wL~~~Q~~DGGWge~~~sy~~~~~~g~g--~s~~s~TA~AL~AL~~a 571 (635)
T TIGR01507 517 REPYIQKALAWLESHQNPDGGWGEDCRSYEDPAYAGKG--ASTASQTAWALIALIAA 571 (635)
T ss_pred ccHHHHHHHHHHHHhcCCCCCCCCCCcccccccccCCC--CCcHHHHHHHHHHHHHh
Confidence 46899999999999999999997542110 011110 11333455788888654
No 25
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=95.74 E-value=0.0057 Score=44.61 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcccCCCCCCc
Q 034929 19 SSPCCKLLINSQLEDGDFPQQ 39 (78)
Q Consensus 19 I~rGi~~Li~~Q~~dG~W~q~ 39 (78)
|+||++||+++|++||.|+.+
T Consensus 1 ~~~~~~~L~~~Q~~dG~W~~~ 21 (348)
T cd02889 1 IRRALDFLLSLQAPDGHWPGE 21 (348)
T ss_pred CchHHHHHHHhccCCCCcccc
Confidence 689999999999999999753
No 26
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=95.65 E-value=0.0026 Score=45.69 Aligned_cols=26 Identities=27% Similarity=0.357 Sum_probs=21.1
Q ss_pred CCchHHHHHHHHHHhcccCCCCCCcc
Q 034929 15 RSYSSSPCCKLLINSQLEDGDFPQQE 40 (78)
Q Consensus 15 ~~~~I~rGi~~Li~~Q~~dG~W~q~~ 40 (78)
+...|.++++||+++|++||.|.+..
T Consensus 47 d~~~i~~a~~wL~~~Q~~dG~F~e~~ 72 (246)
T PF07678_consen 47 DENVICRAVKWLISQQQPDGSFEEDG 72 (246)
T ss_dssp EHHHHHHHHHHHHHHBETTSEB--SS
T ss_pred CHHHHHHHHHHHHHhhcCCCccccCC
Confidence 45679999999999999999996553
No 27
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=95.63 E-value=0.011 Score=32.31 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHhcccCCCCCC
Q 034929 18 SSSPCCKLLINSQLEDGDFPQ 38 (78)
Q Consensus 18 ~I~rGi~~Li~~Q~~dG~W~q 38 (78)
.+++.++||++.|++||.|..
T Consensus 2 d~~~~~~~l~~~Q~~dGGf~~ 22 (44)
T PF00432_consen 2 DVEKLIRFLLSCQNPDGGFGG 22 (44)
T ss_dssp HHHHHHHHHHHTBBTTSSBBS
T ss_pred CHHHHHHHHHHHCCCCCCCCC
Confidence 478999999999999999943
No 28
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=95.63 E-value=0.016 Score=47.18 Aligned_cols=52 Identities=25% Similarity=0.273 Sum_probs=37.2
Q ss_pred ccccccC------C--C--CchHHHHHHHHHHhcccCCCCCCcceeceeccceeccCCCchhhHhHHHHHHH
Q 034929 7 NSCWTDG------K--R--SYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCMLHYPTYRNIFPMWALAEY 68 (78)
Q Consensus 7 QTAWAl~------~--~--~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y 68 (78)
-|+.+|+ . + .+.|+||++||++.|++||.|. |.. +. +| .|...+-+.||...
T Consensus 440 ~T~~~l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q~~DGsw~-----g~w-g~---~y-~YgT~~al~aL~~~ 501 (621)
T TIGR01787 440 VTARVIQALGAFGHRADEIRNVLERALEYLRREQRADGSWF-----GRW-GV---NY-TYGTGFVLSALAAA 501 (621)
T ss_pred hHHHHHHHHHHhcCccHhHHHHHHHHHHHHHHhcCCCCCCc-----ccC-CC---CC-chhHHHHHHHHHHh
Confidence 5788874 1 1 3589999999999999999994 221 12 22 45677888888865
No 29
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=95.53 E-value=0.01 Score=47.85 Aligned_cols=66 Identities=15% Similarity=0.088 Sum_probs=46.5
Q ss_pred CCcccccccC-C-CCchHHHHHHHHHHhcccCCCCCCcc-eece-eccceeccCCCchhhHhHHHHHHHHHH
Q 034929 4 DGFNSCWTDG-K-RSYSSSPCCKLLINSQLEDGDFPQQE-LTGA-FMGNCMLHYPTYRNIFPMWALAEYRSK 71 (78)
Q Consensus 4 ~~~QTAWAl~-~-~~~~I~rGi~~Li~~Q~~dG~W~q~~-~tG~-f~~~~yi~Y~~Yr~~fPl~ALg~Y~~~ 71 (78)
|++|+|-||+ . ..+..++.++||.+.|.+||.|++.. +.|. .|-.--+.-.. .-+||||+.+|.+.
T Consensus 299 D~~~~a~Al~~~G~~~~a~~~l~~l~~~q~~~G~~~~~~~~dG~~~~~~~~~Q~D~--~g~~l~al~~y~~~ 368 (616)
T TIGR01577 299 DASYIATALDRAGYHDRVDRFFRWAMQTQSRDGSWQQRYYLNGRLAPLQWGLQIDE--TGSILWAMDQHYRL 368 (616)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHhhCcCCCcceEEecCCCCCCCCCCccccc--hhHHHHHHHHHHHH
Confidence 7788888886 3 67899999999999999999997764 3444 33111223333 23589999888643
No 30
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=95.07 E-value=0.024 Score=40.14 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=31.5
Q ss_pred CchHHHHHHHHHHhcccCCCCCCcceeceeccce--eccCCCchhhHhHHHHHHHH
Q 034929 16 SYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNC--MLHYPTYRNIFPMWALAEYR 69 (78)
Q Consensus 16 ~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~--yi~Y~~Yr~~fPl~ALg~Y~ 69 (78)
++.|+||++||++.|.+||.|.... ...++.. .-....+-..|-+.+|++..
T Consensus 100 ~~~i~ra~~~L~~~q~~~g~~~~~~--~~~~~~~~~~~~~~~~~tA~al~~L~~~g 153 (282)
T cd02891 100 ENVLARALGWLVPQQKEDGSFRELG--PVIHREMKGGVDDSVSLTAYVLIALAEAG 153 (282)
T ss_pred HHHHHHHHHHHHhccCCCCCcCCCC--CccCHhhcCCcCCCcchHHHHHHHHHHhc
Confidence 4569999999999999999995432 1111100 00122233467777776543
No 31
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=94.84 E-value=0.025 Score=38.52 Aligned_cols=33 Identities=21% Similarity=0.118 Sum_probs=27.1
Q ss_pred CCcccccccC------C--CCchHHHHHHHHHHhcccCCCC
Q 034929 4 DGFNSCWTDG------K--RSYSSSPCCKLLINSQLEDGDF 36 (78)
Q Consensus 4 ~~~QTAWAl~------~--~~~~I~rGi~~Li~~Q~~dG~W 36 (78)
+...|++|+. . +.+.++|+++||.+.|++||.|
T Consensus 139 ~~~~t~~al~aL~~~~~~~~~~~~~~~~~~l~~~q~~~g~~ 179 (300)
T cd00688 139 DVRLTAYALIALALLGKLDPDPLIEKALDYLLSCQNYDGGF 179 (300)
T ss_pred cccHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHhcCCCCc
Confidence 4566888874 1 1468999999999999999999
No 32
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=94.45 E-value=0.024 Score=40.68 Aligned_cols=46 Identities=24% Similarity=0.359 Sum_probs=35.4
Q ss_pred cccccC-----CCCchHHHHHHHHHHhcccCCCCCCcceeceeccceeccCCCchhhHhHHHHHHHH
Q 034929 8 SCWTDG-----KRSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCMLHYPTYRNIFPMWALAEYR 69 (78)
Q Consensus 8 TAWAl~-----~~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y~ 69 (78)
||+||+ .+.+...+.|+||++.|+.+|.|.-.. --+..|.||++|.
T Consensus 195 TaYaLLa~l~~~~~~~~~~iv~WL~~qr~~~Ggf~STQ----------------dTvvaL~AL~~Ya 245 (246)
T PF07678_consen 195 TAYALLALLKRGDLEEASPIVRWLISQRNSGGGFGSTQ----------------DTVVALQALAEYA 245 (246)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHCTTTTSSTSSHH----------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhcCCCCccCcHH----------------HHHHHHHHHHHHh
Confidence 578876 556788999999999999999994222 2457888888874
No 33
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=94.09 E-value=0.026 Score=45.75 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=26.5
Q ss_pred ccccccC---------CCCchHHHHHHHHHHhcccCCCCCCc
Q 034929 7 NSCWTDG---------KRSYSSSPCCKLLINSQLEDGDFPQQ 39 (78)
Q Consensus 7 QTAWAl~---------~~~~~I~rGi~~Li~~Q~~dG~W~q~ 39 (78)
.|++|+. ..++.++||++||++.|++||.|.+.
T Consensus 506 ~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~ 547 (634)
T cd02892 506 GTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPDGGWGES 547 (634)
T ss_pred HHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCCCCCCCc
Confidence 5777763 12478999999999999999999654
No 34
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=93.93 E-value=0.042 Score=46.31 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=24.9
Q ss_pred CCCchHHHHHHHHHHhcccCCCCCCcce
Q 034929 14 KRSYSSSPCCKLLINSQLEDGDFPQQEL 41 (78)
Q Consensus 14 ~~~~~I~rGi~~Li~~Q~~dG~W~q~~~ 41 (78)
.+.++|+||++||++.|++||.|-+.+.
T Consensus 635 ~nc~~irka~~Fll~~Q~~~GGWgEs~l 662 (760)
T KOG0497|consen 635 ENCEAIRKACDFLLSKQNPDGGWGESYL 662 (760)
T ss_pred hccHHHHHHHHHHHhhhcccCCCccccc
Confidence 5689999999999999999999976653
No 35
>PLN02592 ent-copalyl diphosphate synthase
Probab=93.92 E-value=0.034 Score=47.11 Aligned_cols=33 Identities=18% Similarity=0.385 Sum_probs=25.2
Q ss_pred ccccccC-C-----CCchHHHHHHHHHHhcccCCCCCCc
Q 034929 7 NSCWTDG-K-----RSYSSSPCCKLLINSQLEDGDFPQQ 39 (78)
Q Consensus 7 QTAWAl~-~-----~~~~I~rGi~~Li~~Q~~dG~W~q~ 39 (78)
-|||..| + ..|---..++||+++|++||.|...
T Consensus 99 DTAWVAmVp~~~g~~~p~FP~~~~wIl~nQ~~DGsWG~~ 137 (800)
T PLN02592 99 DTAWVALVEDINGSGTPQFPSSLQWIANNQLSDGSWGDA 137 (800)
T ss_pred HhHHHhhcccCCCCCCCCCHHHHHHHHHccCCCCCCCCC
Confidence 4999777 2 1234557999999999999999643
No 36
>PLN02279 ent-kaur-16-ene synthase
Probab=93.70 E-value=0.037 Score=46.66 Aligned_cols=33 Identities=27% Similarity=0.561 Sum_probs=26.0
Q ss_pred ccccccC------CCCchHHHHHHHHHHhcccCCCCCCc
Q 034929 7 NSCWTDG------KRSYSSSPCCKLLINSQLEDGDFPQQ 39 (78)
Q Consensus 7 QTAWAl~------~~~~~I~rGi~~Li~~Q~~dG~W~q~ 39 (78)
-|||..| ...|---..++||+++|.+||.|...
T Consensus 57 DTAWvamv~~~~~~~~p~Fp~~~~wil~nQ~~dGsWg~~ 95 (784)
T PLN02279 57 DTAWVAMVPSPNSQQAPLFPECVKWLLENQLEDGSWGLP 95 (784)
T ss_pred hhHHHHhcccCCCCCCCCChHHHHHHHhcCCCCCCCCCC
Confidence 3999987 22345667999999999999999643
No 37
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=92.94 E-value=0.2 Score=35.34 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=32.8
Q ss_pred CchHHHHHHHHHHhcccCCCCCCcceeceeccceeccCCCchhhHhHHHHHHHHH
Q 034929 16 SYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCMLHYPTYRNIFPMWALAEYRS 70 (78)
Q Consensus 16 ~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y~~ 70 (78)
.+.|++|++.|++.|++||.|. .|++.- .-+.+--.|.+.+|.+..+
T Consensus 48 ~~~i~~~~~~l~~~Q~~dGgf~------~w~~~~--~~~~~~Ta~~~~~L~~a~~ 94 (282)
T cd02891 48 LEYIRKGYQRLLTYQRSDGSFS------AWGNSD--SGSTWLTAYVVKFLSQARK 94 (282)
T ss_pred HHHHHHHHHHHHhhcCCCCCcc------ccCCCC--CCchHHHHHHHHHHHHHHH
Confidence 3569999999999999999982 222221 2244456688888886644
No 38
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=92.72 E-value=0.061 Score=38.77 Aligned_cols=31 Identities=16% Similarity=0.148 Sum_probs=26.2
Q ss_pred CCcccccccC-------CCCchHHHHHHHHHHhcccCC
Q 034929 4 DGFNSCWTDG-------KRSYSSSPCCKLLINSQLEDG 34 (78)
Q Consensus 4 ~~~QTAWAl~-------~~~~~I~rGi~~Li~~Q~~dG 34 (78)
|+.+|+||+. .+.+.+++.++||+++|..+|
T Consensus 174 ~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~~~g 211 (286)
T cd02890 174 HGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASG 211 (286)
T ss_pred CccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCCCCC
Confidence 5668999984 456789999999999999887
No 39
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=92.34 E-value=0.061 Score=39.39 Aligned_cols=33 Identities=15% Similarity=0.023 Sum_probs=26.7
Q ss_pred CCcccccccC-------CCCchHHHHHHHHHHhcccCCCC
Q 034929 4 DGFNSCWTDG-------KRSYSSSPCCKLLINSQLEDGDF 36 (78)
Q Consensus 4 ~~~QTAWAl~-------~~~~~I~rGi~~Li~~Q~~dG~W 36 (78)
|+-.|.||+. .+...+++.++||+++|.++|.+
T Consensus 176 ~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~~~GGf 215 (287)
T cd02894 176 HAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGL 215 (287)
T ss_pred chhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCCCCCCc
Confidence 4556888873 34567999999999999999988
No 40
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=86.78 E-value=0.17 Score=41.51 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=45.3
Q ss_pred CCcccccccC--CCCchHHHHHHHHHHhcccCCCCCCcceece-eccceeccCCCchhhHhHH
Q 034929 4 DGFNSCWTDG--KRSYSSSPCCKLLINSQLEDGDFPQQELTGA-FMGNCMLHYPTYRNIFPMW 63 (78)
Q Consensus 4 ~~~QTAWAl~--~~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~-f~~~~yi~Y~~Yr~~fPl~ 63 (78)
|.+++|+||. -..+..++..+||.+.|.++|.|-+-+.... ....-.+.+..|.+.||++
T Consensus 289 D~~~~~~AL~~~G~~~~a~~~f~~l~~~~~~~~~~~~~y~~~g~~~~~~w~~~~~~~~~~pv~ 351 (612)
T COG3387 289 DASYAALALLAIGYKKEALRFFEFLPDVQTPNGKLYHKYSIDGSDLAESWLPVSGYYNSFPVR 351 (612)
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCceeeEEecCCCccccccccccCCCCCCceE
Confidence 7889999997 4567899999999999999998766554444 4444455666777887763
No 41
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=86.68 E-value=0.23 Score=41.12 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=44.2
Q ss_pred CCcccccccC--CCCchHHHHHHHHHHhcccCCCCCCcc-eece-eccceeccCCCchhhHhHHHHHHHHH
Q 034929 4 DGFNSCWTDG--KRSYSSSPCCKLLINSQLEDGDFPQQE-LTGA-FMGNCMLHYPTYRNIFPMWALAEYRS 70 (78)
Q Consensus 4 ~~~QTAWAl~--~~~~~I~rGi~~Li~~Q~~dG~W~q~~-~tG~-f~~~~yi~Y~~Yr~~fPl~ALg~Y~~ 70 (78)
|+++||-||+ -..+..+|..+||.+.|.++|.|+|.+ +-|. ... -+.-..| -+||+++-.+.+
T Consensus 299 D~a~~a~AL~~~G~~~~a~~~~~~l~~~~~~~G~~lq~y~vdG~~~~~--~iQlD~~--g~~i~~~~~l~~ 365 (648)
T TIGR01535 299 DLYQVANAFLAAGDVDSALRSLDYLAKVQQDNGMFPQNSWVDGKPYWT--GIQLDET--AFPILLAYRLHR 365 (648)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHHHhccCCCcCceeccCCCCCCC--CccccHH--HHHHHHHHHHHH
Confidence 7889999987 456889999999999999999998874 3443 211 1444443 357777755433
No 42
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=84.70 E-value=0.68 Score=35.20 Aligned_cols=21 Identities=5% Similarity=0.072 Sum_probs=18.1
Q ss_pred CchHHHHHHHHHHhcccCCCC
Q 034929 16 SYSSSPCCKLLINSQLEDGDF 36 (78)
Q Consensus 16 ~~~I~rGi~~Li~~Q~~dG~W 36 (78)
.++|+|||++|++.|.++|.|
T Consensus 136 ~~Ai~Rgid~ILktQ~~~gg~ 156 (290)
T TIGR02474 136 KTAVTKGIECILKTQVVQNGK 156 (290)
T ss_pred HHHHHHHHHHHHHhhcccCCc
Confidence 478999999999999888744
No 43
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=83.69 E-value=0.68 Score=34.57 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=30.4
Q ss_pred CCcccccccC-------CC---CchHHHHHHHHHHhcccCCCCCCcceeceecccee
Q 034929 4 DGFNSCWTDG-------KR---SYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCM 50 (78)
Q Consensus 4 ~~~QTAWAl~-------~~---~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~y 50 (78)
|+..|-||+. .+ ...+++.++||+++|..+|.+. .. ++..+..||
T Consensus 193 h~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~-gr-~~k~~D~cy 247 (307)
T cd02895 193 HGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFN-GR-PNKPADTCY 247 (307)
T ss_pred cccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcC-CC-CCCCCccch
Confidence 3456777763 22 4679999999999999998873 22 344555543
No 44
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=82.16 E-value=0.7 Score=37.70 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=20.1
Q ss_pred CchHHHHHHHHHHhcccCCCCC
Q 034929 16 SYSSSPCCKLLINSQLEDGDFP 37 (78)
Q Consensus 16 ~~~I~rGi~~Li~~Q~~dG~W~ 37 (78)
..+|+|+++||++.|.++|.|-
T Consensus 351 ~~~i~~a~e~LL~~Q~~~GsW~ 372 (517)
T COG1657 351 GQPIERALEWLLSDQEPDGSWY 372 (517)
T ss_pred CCcccHHHhhhhhhccccCcee
Confidence 5679999999999999999994
No 45
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.15 E-value=0.93 Score=35.29 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.7
Q ss_pred CchHHHHHHHHHHhcccCCCC
Q 034929 16 SYSSSPCCKLLINSQLEDGDF 36 (78)
Q Consensus 16 ~~~I~rGi~~Li~~Q~~dG~W 36 (78)
+..|+|=++||+.+|..+|.+
T Consensus 227 ~~~~erlirWli~RQ~~sgGf 247 (347)
T KOG0367|consen 227 TSKVERLIRWLIQRQVSSGGF 247 (347)
T ss_pred ccCHHHHHHHHHHHhhccCCc
Confidence 345999999999999999988
No 46
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=79.43 E-value=1.4 Score=33.08 Aligned_cols=45 Identities=11% Similarity=0.069 Sum_probs=29.2
Q ss_pred CCcccccccC-------CCCchHHHHHHHHHHhcccCCCCCCcceeceecccee
Q 034929 4 DGFNSCWTDG-------KRSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCM 50 (78)
Q Consensus 4 ~~~QTAWAl~-------~~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~y 50 (78)
|+-.|.||+. .+.-..++-++||+++|.++|.+. .. ++.++-.||
T Consensus 180 h~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~~~GGf~-gr-p~k~~D~cy 231 (316)
T PLN03201 180 HAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLN-GR-PEKLPDVCY 231 (316)
T ss_pred ccceehHHHHHHHHcCccccCCHHHHHHHHHHhCCCCCCcC-CC-CCCCCchHH
Confidence 3456889873 122235677899999999888873 22 444666654
No 47
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=78.26 E-value=1.8 Score=31.14 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.6
Q ss_pred CchHHHHHHHHHHhcccCCCCCC
Q 034929 16 SYSSSPCCKLLINSQLEDGDFPQ 38 (78)
Q Consensus 16 ~~~I~rGi~~Li~~Q~~dG~W~q 38 (78)
.+.+++.++||.+.|++||.|-.
T Consensus 145 ~~~~~~~~~~l~~~Q~~dGGf~~ 167 (286)
T cd02890 145 DIDKEKLIDYILSCQNYDGGFGG 167 (286)
T ss_pred hhhHHHHHHHHHHhCCCCCCcCC
Confidence 46799999999999999999964
No 48
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=73.63 E-value=1.4 Score=23.45 Aligned_cols=24 Identities=17% Similarity=0.081 Sum_probs=18.5
Q ss_pred ccccccC--CCCchHHHHHHHHHHhc
Q 034929 7 NSCWTDG--KRSYSSSPCCKLLINSQ 30 (78)
Q Consensus 7 QTAWAl~--~~~~~I~rGi~~Li~~Q 30 (78)
+=||+|- .....+++||..|-+.-
T Consensus 6 nyAw~Lv~S~~~~d~~~Gi~lLe~l~ 31 (35)
T PF14852_consen 6 NYAWGLVKSNNREDQQEGIALLEELY 31 (35)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3489986 55678999999987643
No 49
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=72.88 E-value=2.2 Score=31.72 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=24.3
Q ss_pred CcccccccC-------CCCchHHHHHHHHHHhccc-CCCC
Q 034929 5 GFNSCWTDG-------KRSYSSSPCCKLLINSQLE-DGDF 36 (78)
Q Consensus 5 ~~QTAWAl~-------~~~~~I~rGi~~Li~~Q~~-dG~W 36 (78)
+--|.||+. .+...+++.++||+++|.+ +|.+
T Consensus 175 ~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~~~~GGf 214 (299)
T cd02893 175 GGYTFCALAALAILGKPDKLDLESLLRWLVARQMRFEGGF 214 (299)
T ss_pred ccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcCCCCCCc
Confidence 345788873 3345799999999999987 7766
No 50
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=71.88 E-value=3.3 Score=30.28 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=20.6
Q ss_pred CchHHHHHHHHHHhcccCCCCCCc
Q 034929 16 SYSSSPCCKLLINSQLEDGDFPQQ 39 (78)
Q Consensus 16 ~~~I~rGi~~Li~~Q~~dG~W~q~ 39 (78)
...+++.++||++.|++||.|...
T Consensus 147 ~i~~~~~~~~l~~~q~~dGGF~~~ 170 (287)
T cd02894 147 LIDVDKAVDYLLSCYNFDGGFGCR 170 (287)
T ss_pred hhhHHHHHHHHHHcCCCCCCcCCC
Confidence 456899999999999999999543
No 51
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=65.64 E-value=1.7 Score=22.37 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=17.6
Q ss_pred CCCCCcccccccCCCCchHHHHHHHHHH
Q 034929 1 MGYDGFNSCWTDGKRSYSSSPCCKLLIN 28 (78)
Q Consensus 1 ~~~~~~QTAWAl~~~~~~I~rGi~~Li~ 28 (78)
|||+..+---||-...-.+.+++.||++
T Consensus 11 mGf~~~~~~~AL~~~~~d~~~A~~~L~~ 38 (38)
T cd00194 11 MGFSREEARKALRATNNNVERAVEWLLE 38 (38)
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence 6777554445554333368999999864
No 52
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=56.45 E-value=18 Score=26.66 Aligned_cols=54 Identities=20% Similarity=0.205 Sum_probs=37.2
Q ss_pred chHHHHHHHHHHh-cccCCC--CCCcceece-ec---cceeccCCCchhhHhHHHHHHHHHH
Q 034929 17 YSSSPCCKLLINS-QLEDGD--FPQQELTGA-FM---GNCMLHYPTYRNIFPMWALAEYRSK 71 (78)
Q Consensus 17 ~~I~rGi~~Li~~-Q~~dG~--W~q~~~tG~-f~---~~~yi~Y~~Yr~~fPl~ALg~Y~~~ 71 (78)
+.++|+.+.|+++ -.+||. +.+-. .+. .. +.=......|-..+=|+||.++.|.
T Consensus 275 ~~a~~a~~~l~~~~~~~dG~~~~~~~~-~~~~~~~Y~~~~~~~~~~~G~g~fl~A~~e~~r~ 335 (336)
T PF07470_consen 275 PAAEKALEALLSNAIDPDGKLGLKGVC-GGTPVGGYQGRDYNVNDPYGDGYFLLALAEYERL 335 (336)
T ss_dssp HHHHHHHHHHHHCEB-TTSSSBBTCEB-ETTTS-SHHTEEEECCSHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHhCccCCCCCeEEeeeE-eecCCCCCCCCCCCCCcCcHHHHHHHHHHHHHHh
Confidence 6799999999999 788888 64332 222 11 1223345578899999999999875
No 53
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=56.32 E-value=11 Score=28.25 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=20.0
Q ss_pred CchHHHHHHHHHHhcccCCCCCC
Q 034929 16 SYSSSPCCKLLINSQLEDGDFPQ 38 (78)
Q Consensus 16 ~~~I~rGi~~Li~~Q~~dG~W~q 38 (78)
...+++.++||++.|+.||.|..
T Consensus 151 ~i~~~~~~~~i~scq~~dGGF~~ 173 (316)
T PLN03201 151 KINVEKAVDYIVSCKNFDGGFGC 173 (316)
T ss_pred hhHHHHHHHHHHHhcCCCCCcCC
Confidence 34689999999999999999964
No 54
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=55.39 E-value=17 Score=26.75 Aligned_cols=50 Identities=22% Similarity=0.149 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHhcc--cCCCCCCcceeceeccceeccCCCchhhHhHHHHHHHH
Q 034929 17 YSSSPCCKLLINSQL--EDGDFPQQELTGAFMGNCMLHYPTYRNIFPMWALAEYR 69 (78)
Q Consensus 17 ~~I~rGi~~Li~~Q~--~dG~W~q~~~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y~ 69 (78)
+.+++|++||.+.-. ++|.|--..-.|. | .--.-+.|.+.|-|+||+.++
T Consensus 43 ~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~-~--~~~~~~~Y~~af~l~ala~~~ 94 (346)
T PF07221_consen 43 ELAEHGFDFLRKHFRDPEYGGWYRSLDDGG-P--LDPQKDLYDQAFALLALAEAR 94 (346)
T ss_dssp HHHHHHHHHHHHTTBTTTTSSBSSEEETTE-E--EE--EEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCCEEEEeCCCC-C--CccccchHHHHHHHHHHHHHH
Confidence 468899999998874 5577743322232 2 122457889999999999963
No 55
>PLN02710 farnesyltranstransferase subunit beta
Probab=54.00 E-value=7 Score=31.28 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=23.0
Q ss_pred CchHHHHHHHHHHhcccCCCCCCcceeceecccee
Q 034929 16 SYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCM 50 (78)
Q Consensus 16 ~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~y 50 (78)
.-.+++-++||+++|..+|.+ +.. ++-.+-.||
T Consensus 238 ~id~~~l~~WL~~rQ~~~GGF-~GR-~nKl~D~CY 270 (439)
T PLN02710 238 RLDLPSLINWVVFRQGVEGGF-QGR-TNKLVDGCY 270 (439)
T ss_pred ccCHHHHHHHHHHhcCcCCCc-CCC-CCCCCCchh
Confidence 346889999999999987877 222 234555554
No 56
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=53.97 E-value=2 Score=27.46 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=10.7
Q ss_pred chHHHHHHHHHHhcccCCCCC
Q 034929 17 YSSSPCCKLLINSQLEDGDFP 37 (78)
Q Consensus 17 ~~I~rGi~~Li~~Q~~dG~W~ 37 (78)
..|.-|--.||+.+++||.||
T Consensus 67 a~L~~gQ~vliE~rn~DGtWP 87 (88)
T PF14836_consen 67 AGLYDGQVVLIEERNEDGTWP 87 (88)
T ss_dssp TT--TTEEEEEEE--TTS--T
T ss_pred ccCcCCCEEEEEeeccCCCCC
Confidence 345556666777789999998
No 57
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=51.90 E-value=12 Score=27.69 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=19.8
Q ss_pred CCchHHHHHHHHHHhcccCCCCC
Q 034929 15 RSYSSSPCCKLLINSQLEDGDFP 37 (78)
Q Consensus 15 ~~~~I~rGi~~Li~~Q~~dG~W~ 37 (78)
+...+++.++||.+.|..||.+.
T Consensus 144 ~~~~~~~~~~~l~~cQ~~dGGF~ 166 (299)
T cd02893 144 TDELFEGVAEYILSCQTYEGGFG 166 (299)
T ss_pred chhhHHHHHHHHHHcCCCCCCcC
Confidence 34568999999999999999884
No 58
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=51.05 E-value=15 Score=27.43 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=19.6
Q ss_pred chHHHHHHHHHHhcccCCCCCCc
Q 034929 17 YSSSPCCKLLINSQLEDGDFPQQ 39 (78)
Q Consensus 17 ~~I~rGi~~Li~~Q~~dG~W~q~ 39 (78)
...++.++||++.|+.||.|-.+
T Consensus 165 ~d~~~li~~l~s~Q~~dGGF~~~ 187 (307)
T cd02895 165 IDKEKLIDYIKSSQSYDGGFGQG 187 (307)
T ss_pred ccHHHHHHHHHHccCCCCCccCC
Confidence 45789999999999999998543
No 59
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=40.83 E-value=15 Score=27.90 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=16.0
Q ss_pred CchHHHHHHHHHHhccc-C---CCCCCcc
Q 034929 16 SYSSSPCCKLLINSQLE-D---GDFPQQE 40 (78)
Q Consensus 16 ~~~I~rGi~~Li~~Q~~-d---G~W~q~~ 40 (78)
.+++.|||++|++.|.. + --|-|++
T Consensus 131 ~~A~~kgi~ciL~tQi~~~g~~t~W~qQh 159 (289)
T PF09492_consen 131 RAAVDKGIDCILKTQIRQNGKLTAWCQQH 159 (289)
T ss_dssp HHHHHHHHHHHHHHS-EETTEE----SEE
T ss_pred HHHHHHHHHHHHHHHcccCCCCCchhhcc
Confidence 36899999999999972 2 3576664
No 60
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=39.89 E-value=25 Score=25.95 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=19.9
Q ss_pred chHHHHHHHHHHhcccCCCCCCc
Q 034929 17 YSSSPCCKLLINSQLEDGDFPQQ 39 (78)
Q Consensus 17 ~~I~rGi~~Li~~Q~~dG~W~q~ 39 (78)
+.|+++++++++.+.++|.||..
T Consensus 188 ~~i~~~i~~~~~~~~~~g~w~~~ 210 (343)
T cd04794 188 PLIKRSLDYLLSLQFPSGNFPSS 210 (343)
T ss_pred HHHHHHHHHHHHhhccCCCCCCc
Confidence 57999999999998889999754
No 61
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=39.74 E-value=18 Score=33.08 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=21.3
Q ss_pred CCchHHHHHHHHHHhcccCCCCCCc
Q 034929 15 RSYSSSPCCKLLINSQLEDGDFPQQ 39 (78)
Q Consensus 15 ~~~~I~rGi~~Li~~Q~~dG~W~q~ 39 (78)
+...|.+++.||+++|++||++.+.
T Consensus 1022 d~~~i~~a~~wl~~~Qk~~GsF~e~ 1046 (1436)
T KOG1366|consen 1022 DPNVITQALNWLSQQQKENGSFKEV 1046 (1436)
T ss_pred cHHHHHHHHHHHHHhhccCceEecc
Confidence 4567999999999999999999543
No 62
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.62 E-value=22 Score=26.91 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=23.5
Q ss_pred chHHHHHHHHHHhcccCCCCCCcceece
Q 034929 17 YSSSPCCKLLINSQLEDGDFPQQELTGA 44 (78)
Q Consensus 17 ~~I~rGi~~Li~~Q~~dG~W~q~~~tG~ 44 (78)
-.|.+-++|+++.|++||.+.-....|+
T Consensus 228 ~~i~~~~rFI~slqN~nGGFRRS~~~GI 255 (274)
T COG1689 228 YCISDHIRFIRSLQNQNGGFRRSYELGI 255 (274)
T ss_pred cCchHHHHHHHHhhcCCCCeeeeEeccc
Confidence 5688899999999999999976666665
No 63
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=38.14 E-value=44 Score=26.60 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=34.1
Q ss_pred chHHHHHHHHHH-hcccCCCCCCcc-eeceeccceeccCCCchhhHhHHHHHHHHH
Q 034929 17 YSSSPCCKLLIN-SQLEDGDFPQQE-LTGAFMGNCMLHYPTYRNIFPMWALAEYRS 70 (78)
Q Consensus 17 ~~I~rGi~~Li~-~Q~~dG~W~q~~-~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y~~ 70 (78)
+.|+-|++|+-+ ...++|.|---- -.| +..==+++.|.+.|.|+|++.+..
T Consensus 78 ~~v~hG~~y~~~~~R~~~gg~~~~~~~dg---~~~Dat~d~Y~haFallA~A~~a~ 130 (388)
T COG2942 78 DAVAHGIAYLARVGRDPEGGWYFALDNDG---GPVDATKDLYGHAFALLAAAHAAT 130 (388)
T ss_pred HHHHhHHHHHHhcCcCCCCCeEEEecCCC---CcccccHhHHHHHHHHHHHHHHHh
Confidence 578999999984 345667662110 011 122347899999999999999754
No 64
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=34.31 E-value=63 Score=25.14 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=21.2
Q ss_pred CCchHHHHHHHHHHhcccCCCCCCccee
Q 034929 15 RSYSSSPCCKLLINSQLEDGDFPQQELT 42 (78)
Q Consensus 15 ~~~~I~rGi~~Li~~Q~~dG~W~q~~~t 42 (78)
+.+-++|.++.+.+.|.+||.+|...|.
T Consensus 167 ~~~l~~~~l~~~~~~q~~~G~~p~~~P~ 194 (509)
T PF05592_consen 167 DAALYRKWLRDFADSQRPDGLLPSVAPS 194 (509)
T ss_dssp -HHHHHHHHHHHHGGTTTSTT-SSBSS-
T ss_pred cHHHHHHHHHHHHHhhcccCCceEEecc
Confidence 4467899999999999999998765543
No 65
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=34.14 E-value=36 Score=18.45 Aligned_cols=16 Identities=13% Similarity=0.000 Sum_probs=13.5
Q ss_pred CCCchHHHHHHHHHHh
Q 034929 14 KRSYSSSPCCKLLINS 29 (78)
Q Consensus 14 ~~~~~I~rGi~~Li~~ 29 (78)
-.+|.|+||+.++++-
T Consensus 20 l~DpdvqrgL~~ll~~ 35 (42)
T PF07849_consen 20 LRDPDVQRGLGFLLAF 35 (42)
T ss_pred HcCHHHHHHHHHHHHH
Confidence 4678999999999874
No 66
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=33.64 E-value=34 Score=18.35 Aligned_cols=13 Identities=0% Similarity=-0.005 Sum_probs=10.6
Q ss_pred CCchHHHHHHHHH
Q 034929 15 RSYSSSPCCKLLI 27 (78)
Q Consensus 15 ~~~~I~rGi~~Li 27 (78)
|..+|++||.|++
T Consensus 10 Dg~aiDqgiay~L 22 (34)
T PF06376_consen 10 DGKAIDQGIAYML 22 (34)
T ss_pred CcchhhHHHHHHH
Confidence 4568999999986
No 67
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=32.41 E-value=30 Score=27.13 Aligned_cols=30 Identities=17% Similarity=0.386 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcccCCCCCCcceeceecccee
Q 034929 19 SSPCCKLLINSQLEDGDFPQQELTGAFMGNCM 50 (78)
Q Consensus 19 I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~y 50 (78)
+++=+.||.+||.+.|...-. +--++.+||
T Consensus 225 ~E~l~~Wl~~RQ~ssgGl~GR--~nKl~D~CY 254 (342)
T COG5029 225 VEKLIRWLAERQLSSGGLNGR--SNKLVDTCY 254 (342)
T ss_pred HHHHHHHHHHcccccCCcCCC--cccCccchh
Confidence 899999999999998865211 112666665
No 68
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=31.50 E-value=31 Score=28.33 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=18.3
Q ss_pred chHHHHHHHHHHhcccCCCCC
Q 034929 17 YSSSPCCKLLINSQLEDGDFP 37 (78)
Q Consensus 17 ~~I~rGi~~Li~~Q~~dG~W~ 37 (78)
.+.-.+++||+..|.+.|.|+
T Consensus 380 aaFyaAadWlV~NQd~kGGW~ 400 (594)
T KOG3760|consen 380 AAFYAAADWLVKNQDDKGGWS 400 (594)
T ss_pred HHHHHHHHHHhhCCCCCCCCc
Confidence 456679999999999999996
No 69
>PF09282 Mago-bind: Mago binding; InterPro: IPR015362 Members of this family adopt a structure consisting of a small globular all-beta-domain, with a three-stranded beta-sheet and a contiguous beta-hairpin. They bind to Mago alpha-helices via extensive electrostatic interactions and at a beta2-beta3 loop via hydrophobic interactions []. ; GO: 0005515 protein binding; PDB: 1RK8_C.
Probab=30.66 E-value=3.7 Score=21.07 Aligned_cols=14 Identities=29% Similarity=0.461 Sum_probs=6.5
Q ss_pred HHHhcccCCCCCCc
Q 034929 26 LINSQLEDGDFPQQ 39 (78)
Q Consensus 26 Li~~Q~~dG~W~q~ 39 (78)
+-.+|.+||+|-.+
T Consensus 5 I~~s~RpDGt~RK~ 18 (27)
T PF09282_consen 5 IPASQRPDGTWRKE 18 (27)
T ss_dssp E--EE-TTS-EE--
T ss_pred cCcccCCCCCcccc
Confidence 44678999999543
No 70
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=29.22 E-value=43 Score=25.92 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHhcccCCCCCCcceece
Q 034929 18 SSSPCCKLLINSQLEDGDFPQQELTGA 44 (78)
Q Consensus 18 ~I~rGi~~Li~~Q~~dG~W~q~~~tG~ 44 (78)
+|++-++.|+++|++||.+--.+.||.
T Consensus 216 ~i~~~~~kIl~~q~~~G~~GNiySTgl 242 (326)
T PF01122_consen 216 AIRSLVEKILSQQKPNGLFGNIYSTGL 242 (326)
T ss_dssp HHHHHHHHHHHTB-TTS-BSSTTTHHH
T ss_pred HHHHHHHHHHHhcCCCCcccchhhHHH
Confidence 466777778899999999877776664
No 71
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=25.07 E-value=6.6 Score=33.01 Aligned_cols=41 Identities=22% Similarity=0.181 Sum_probs=27.5
Q ss_pred CCCCcccccccCCCCchHHHHHHHHHHhcccCCCCCCcceece
Q 034929 2 GYDGFNSCWTDGKRSYSSSPCCKLLINSQLEDGDFPQQELTGA 44 (78)
Q Consensus 2 ~~~~~QTAWAl~~~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~ 44 (78)
|+...|--=||+...-.+.|.|.|.++ .+||++|+.+..|.
T Consensus 632 Gln~n~~Rkal~~~n~d~~r~V~w~~N--~~D~tF~EP~v~~e 672 (749)
T COG5207 632 GLNPNLCRKALMDMNTDSKRRVVWCIN--DDDGTFPEPEVPNE 672 (749)
T ss_pred CCCHHHHHHHHHHccCCchheEEEEEe--CCCCCCCCCCCCch
Confidence 333333333444344568899999998 78999988776654
No 72
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=24.32 E-value=1.1e+02 Score=22.39 Aligned_cols=53 Identities=15% Similarity=0.023 Sum_probs=35.4
Q ss_pred chHHHHHHHHHHhccc-C-CCCCCcce-eceeccceeccCCCchhhHhHHHHHHHHHHh
Q 034929 17 YSSSPCCKLLINSQLE-D-GDFPQQEL-TGAFMGNCMLHYPTYRNIFPMWALAEYRSKF 72 (78)
Q Consensus 17 ~~I~rGi~~Li~~Q~~-d-G~W~q~~~-tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y~~~~ 72 (78)
+..++++++|.+.-.+ + |.|-..-. .|. |. --..+.|-+.|-|+||+++.+..
T Consensus 76 ~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~-~~--~~~~~l~~~a~~l~ala~~~~at 131 (384)
T cd00249 76 EAAEHGLEYLDRHGRDPDHGGWYFALDQDGR-PV--DATKDLYSHAFALLAAAQAAKVG 131 (384)
T ss_pred HHHHHHHHHHHHhCcCCCCCCEEEEEcCCCC-Cc--ccccchHHHHHHHHHHHHHHHhc
Confidence 4678999999986543 4 87743321 333 11 12347899999999999876543
No 73
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=24.19 E-value=49 Score=27.10 Aligned_cols=36 Identities=11% Similarity=0.284 Sum_probs=24.0
Q ss_pred hHHHH-HHHHHHhcccCCCCCCc--ceeceeccce-eccC
Q 034929 18 SSSPC-CKLLINSQLEDGDFPQQ--ELTGAFMGNC-MLHY 53 (78)
Q Consensus 18 ~I~rG-i~~Li~~Q~~dG~W~q~--~~tG~f~~~~-yi~Y 53 (78)
++.|- +..|.+.|.++|.||+. ...|.+|... .|++
T Consensus 477 g~eR~l~AlLe~hG~d~~~wPe~~r~~~~~~~~~~~~~~~ 516 (517)
T PRK00960 477 GLERWVIGFLAQKGFDPENWPEEIRKRVGELPEGPKFLTW 516 (517)
T ss_pred HHHHHHHHHHHhcCCCCCcCCHHHHHhhcCCCcCceeccC
Confidence 45564 45566788999999976 2347777766 3444
No 74
>PF09248 DUF1965: Domain of unknown function (DUF1965); InterPro: IPR015328 Members of this family of fungal domains adopt a structure that consists of an alpha/beta motif. Their exact function has not, as yet, been determined []. ; PDB: 1N9E_A 1RKY_A 1W7C_A 3PGB_A.
Probab=23.17 E-value=23 Score=22.01 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=16.1
Q ss_pred CCCCcccccccC---------CCCchHHHHH---HHHHHhcccCCCCCCcceece
Q 034929 2 GYDGFNSCWTDG---------KRSYSSSPCC---KLLINSQLEDGDFPQQELTGA 44 (78)
Q Consensus 2 ~~~~~QTAWAl~---------~~~~~I~rGi---~~Li~~Q~~dG~W~q~~~tG~ 44 (78)
|=|.|| |-|. +..++.+.|. .+..-.++.||+|..-...|.
T Consensus 19 GrDpS~--Wkv~gw~Yn~~fy~tteeFr~A~~~~~f~k~~~n~dg~Wa~td~~G~ 71 (74)
T PF09248_consen 19 GRDPSK--WKVLGWVYNGQFYPTTEEFREAWWSGDFKKLGPNVDGDWASTDQQGE 71 (74)
T ss_dssp SS-GGG---EEEEEEETTEEESSHHHHHHHHCSTT----------GGG--S--TT
T ss_pred cCChHH--cEEEEEEECCEEcccHHHHHHHHhCCCceecCCCCCCCceeeccCCC
Confidence 567777 7774 5556777776 233334667899966555553
No 75
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=23.03 E-value=19 Score=18.20 Aligned_cols=10 Identities=10% Similarity=0.275 Sum_probs=7.0
Q ss_pred hHHHHHHHHH
Q 034929 18 SSSPCCKLLI 27 (78)
Q Consensus 18 ~I~rGi~~Li 27 (78)
.+.+++.||+
T Consensus 28 d~~~A~~~L~ 37 (37)
T smart00165 28 NVERAAEYLL 37 (37)
T ss_pred CHHHHHHHHC
Confidence 4777777774
No 76
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=22.66 E-value=36 Score=21.05 Aligned_cols=14 Identities=29% Similarity=0.802 Sum_probs=10.8
Q ss_pred eccceeccCCCchh
Q 034929 45 FMGNCMLHYPTYRN 58 (78)
Q Consensus 45 f~~~~yi~Y~~Yr~ 58 (78)
+...|+++|..|++
T Consensus 93 ~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 93 WYDSCFLRYENYPF 106 (106)
T ss_dssp EESSEEEEEESS--
T ss_pred ECCCEEEEEECCCC
Confidence 77789999999875
No 77
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.65 E-value=24 Score=27.66 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=18.4
Q ss_pred CCCCCcccccccCCCCchHHHHHHHHHHh
Q 034929 1 MGYDGFNSCWTDGKRSYSSSPCCKLLINS 29 (78)
Q Consensus 1 ~~~~~~QTAWAl~~~~~~I~rGi~~Li~~ 29 (78)
|||+-.|-.=||-+.----+|||+||++-
T Consensus 166 MGf~R~qV~~ALRAafNNPdRAVEYL~tG 194 (378)
T TIGR00601 166 MGYEREEVERALRAAFNNPDRAVEYLLTG 194 (378)
T ss_pred hCCCHHHHHHHHHHHhCCHHHHHHHHHhC
Confidence 66666666656532212347899999974
No 78
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=22.08 E-value=23 Score=27.81 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=20.3
Q ss_pred CCCCCcccccccCCCCchHHHHHHHHHHh
Q 034929 1 MGYDGFNSCWTDGKRSYSSSPCCKLLINS 29 (78)
Q Consensus 1 ~~~~~~QTAWAl~~~~~~I~rGi~~Li~~ 29 (78)
||||-.+.--||.+.--.=+|+|+||++-
T Consensus 145 MGy~re~V~~AlRAafNNPeRAVEYLl~G 173 (340)
T KOG0011|consen 145 MGYDREEVERALRAAFNNPERAVEYLLNG 173 (340)
T ss_pred hCccHHHHHHHHHHhhCChhhhHHHHhcC
Confidence 78888777777652222347899999974
No 79
>PRK13258 7-cyano-7-deazaguanine reductase; Provisional
Probab=21.81 E-value=59 Score=21.35 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=31.2
Q ss_pred ceece-eccceeccCCCchhhHhHHHHHHHHHHhcCCCC
Q 034929 40 ELTGA-FMGNCMLHYPTYRNIFPMWALAEYRSKFQSPKI 77 (78)
Q Consensus 40 ~~tG~-f~~~~yi~Y~~Yr~~fPl~ALg~Y~~~~~~~~~ 77 (78)
+.+|. +.+...|.|.+=.++-=+..|.+|...+..+.+
T Consensus 30 p~tg~Pd~g~~~I~Y~P~~~iielkSLk~Yl~Sf~~~~~ 68 (114)
T PRK13258 30 PKTGQPDFATIVIDYIPDKKCVELKSLKLYLFSFRNHGI 68 (114)
T ss_pred CCCCCCeEEEEEEEEeCCCCEEcHHHHHHHHHHHHCCCc
Confidence 35677 778889999998888999999999988877654
No 80
>PF11146 DUF2905: Protein of unknown function (DUF2905); InterPro: IPR021320 This is a family of bacterial proteins conserved of unknown function.
Probab=21.21 E-value=29 Score=20.88 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.3
Q ss_pred eceeccceeccCCCchhhHhHHH
Q 034929 42 TGAFMGNCMLHYPTYRNIFPMWA 64 (78)
Q Consensus 42 tG~f~~~~yi~Y~~Yr~~fPl~A 64 (78)
-|-.|+.+.++=.+.+.+||+..
T Consensus 27 lGrLPGDi~i~~~~~~fyfPi~s 49 (64)
T PF11146_consen 27 LGRLPGDIRIRRGNFTFYFPITS 49 (64)
T ss_pred CCCCCccEEEEECCEEEEEehHH
Confidence 47789999999999999999865
No 81
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=20.42 E-value=42 Score=23.49 Aligned_cols=25 Identities=12% Similarity=0.080 Sum_probs=20.0
Q ss_pred ccccccC--CCCchHHHHHHHHHHhcc
Q 034929 7 NSCWTDG--KRSYSSSPCCKLLINSQL 31 (78)
Q Consensus 7 QTAWAl~--~~~~~I~rGi~~Li~~Q~ 31 (78)
.=||||- .+...|++||..|-+.-.
T Consensus 37 ~lAwaLV~S~~~~dv~~GI~iLe~l~~ 63 (149)
T KOG3364|consen 37 NLAWALVRSRDTEDVQEGIVILEDLLK 63 (149)
T ss_pred HHHHHHHcccchHHHHHhHHHHHHHhh
Confidence 3489985 677899999999987654
No 82
>PF13122 DUF3977: Protein of unknown function (DUF3977)
Probab=20.42 E-value=37 Score=21.19 Aligned_cols=29 Identities=21% Similarity=0.532 Sum_probs=19.8
Q ss_pred HHHHHh--cccCC-CCCCcceece-eccceecc
Q 034929 24 KLLINS--QLEDG-DFPQQELTGA-FMGNCMLH 52 (78)
Q Consensus 24 ~~Li~~--Q~~dG-~W~q~~~tG~-f~~~~yi~ 52 (78)
+|++++ .++|| +++|..+.+. ++.++|++
T Consensus 11 ~W~vRTEtE~~DGTEfE~rGii~pi~feS~Y~R 43 (77)
T PF13122_consen 11 RWFVRTETENEDGTEFEQRGIIKPIYFESLYLR 43 (77)
T ss_pred EEEEEEEEecCCCcEeeecccccccchheeeee
Confidence 455543 35677 5667778887 88898875
No 83
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=20.20 E-value=15 Score=18.93 Aligned_cols=9 Identities=11% Similarity=0.132 Sum_probs=6.3
Q ss_pred hHHHHHHHH
Q 034929 18 SSSPCCKLL 26 (78)
Q Consensus 18 ~I~rGi~~L 26 (78)
.++++++||
T Consensus 29 nve~A~~~L 37 (37)
T PF00627_consen 29 NVERAVDWL 37 (37)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHhC
Confidence 577777776
Done!