Query 034929
Match_columns 78
No_of_seqs 133 out of 558
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 12:38:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034929.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034929hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2sqc_A Squalene-hopene cyclase 99.8 1.2E-20 4E-25 148.6 3.7 70 5-74 553-630 (631)
2 1w6k_A Lanosterol synthase; cy 99.8 2.2E-20 7.5E-25 150.0 3.7 74 4-77 648-728 (732)
3 2wy7_A Complement C3D fragment 98.4 1.1E-07 3.6E-12 68.5 2.2 53 6-74 238-295 (310)
4 1qqf_A Protein (complement C3D 98.1 1.5E-06 5E-11 61.4 2.7 50 6-71 222-276 (277)
5 1hzf_A Complement factor C4A; 97.5 4.6E-05 1.6E-09 56.2 2.9 51 6-72 307-363 (367)
6 2pn5_A TEP1R, thioester-contai 97.3 8.9E-05 3E-09 62.0 2.0 52 6-73 1050-1106(1325)
7 2hr0_B Complement C3 alpha' ch 97.0 0.00028 9.5E-09 57.5 2.7 52 7-74 484-540 (915)
8 2h6f_B Protein farnesyltransfe 97.0 0.00011 3.8E-09 56.4 -0.2 33 4-36 248-288 (437)
9 1gxm_A Pectate lyase; mechanis 96.6 0.00092 3.1E-08 50.3 2.5 27 16-42 96-122 (332)
10 3dss_B Geranylgeranyl transfer 96.6 0.00027 9.3E-09 52.1 -0.5 45 4-50 190-241 (331)
11 1r76_A Pectate lyase; A-helica 96.2 0.0036 1.2E-07 48.2 3.6 26 17-42 175-200 (408)
12 2h6f_B Protein farnesyltransfe 96.2 0.00098 3.3E-08 51.1 0.4 34 6-39 204-242 (437)
13 1r76_A Pectate lyase; A-helica 96.0 0.0015 5.1E-08 50.3 0.7 33 5-37 292-334 (408)
14 2sqc_A Squalene-hopene cyclase 95.0 0.012 4.3E-07 46.2 2.8 52 7-68 448-507 (631)
15 1n4q_B Geranyltransferase type 94.9 0.0021 7.1E-08 48.5 -2.0 30 5-36 220-260 (377)
16 1w6k_A Lanosterol synthase; cy 94.7 0.0086 2.9E-07 48.2 1.2 24 17-40 610-633 (732)
17 3s9v_A Abietadiene synthase, c 94.7 0.012 4.2E-07 48.1 2.0 33 7-39 58-96 (785)
18 1hzf_A Complement factor C4A; 94.2 0.017 5.9E-07 42.3 1.7 25 15-39 140-164 (367)
19 3pya_A ENT-copalyl diphosphate 94.2 0.016 5.6E-07 47.2 1.7 32 7-38 36-71 (727)
20 3sdr_A Alpha-bisabolene syntha 94.1 0.016 5.6E-07 47.6 1.6 33 7-39 85-123 (817)
21 1qqf_A Protein (complement C3D 94.0 0.024 8.3E-07 39.6 2.1 25 15-39 87-112 (277)
22 4acq_A Alpha-2-macroglobulin; 93.8 0.014 4.7E-07 50.1 0.6 52 7-74 1185-1247(1451)
23 3dss_B Geranylgeranyl transfer 93.8 0.011 3.7E-07 43.5 -0.1 26 14-39 159-184 (331)
24 4fxk_B Complement C4-A alpha c 93.6 0.052 1.8E-06 43.1 3.5 50 8-73 586-641 (767)
25 2wy7_A Complement C3D fragment 93.3 0.038 1.3E-06 39.3 2.1 25 15-39 103-128 (310)
26 1gxm_A Pectate lyase; mechanis 92.8 0.041 1.4E-06 41.4 1.7 30 16-45 168-201 (332)
27 3p5p_A Taxadiene synthase; cla 92.3 0.025 8.7E-07 46.2 0.1 32 7-38 35-74 (764)
28 4acq_A Alpha-2-macroglobulin; 91.1 0.049 1.7E-06 46.8 0.6 25 15-39 1036-1060(1451)
29 3cu7_A Complement C5; Mg domai 90.5 0.21 7.1E-06 43.1 3.8 51 7-73 1250-1305(1676)
30 1n4q_B Geranyltransferase type 89.6 0.17 5.7E-06 38.0 2.2 25 15-39 189-213 (377)
31 2b39_A C3; thioester, immune d 89.2 0.17 5.9E-06 43.6 2.3 51 7-73 1231-1286(1661)
32 2hr0_B Complement C3 alpha' ch 86.1 0.2 6.9E-06 40.8 0.9 24 16-39 349-373 (915)
33 3prx_B Cobra venom factor; imm 82.0 0.28 9.7E-06 42.9 0.1 51 7-73 1213-1268(1642)
34 1ulv_A Glucodextranase; GH fam 80.6 0.72 2.4E-05 38.6 2.0 63 4-69 333-399 (1020)
35 1wji_A Tudor domain containing 80.0 0.36 1.2E-05 27.8 0.0 34 1-34 19-52 (63)
36 3prx_B Cobra venom factor; imm 78.9 0.4 1.4E-05 42.0 0.0 53 15-69 1080-1138(1642)
37 1vg5_A RSGI RUH-014, rhomboid 78.8 0.24 8.1E-06 29.6 -1.0 32 1-32 39-70 (73)
38 2pn5_A TEP1R, thioester-contai 77.7 1.1 3.7E-05 37.7 2.2 24 16-39 923-946 (1325)
39 4fxk_B Complement C4-A alpha c 76.4 0.73 2.5E-05 36.5 0.9 25 15-39 417-441 (767)
40 3qde_A Cellobiose phosphorylas 74.0 2.3 7.9E-05 34.5 3.2 67 4-72 361-431 (811)
41 2knz_A Ubiquilin-4; cytoplasm, 73.4 0.42 1.4E-05 26.5 -0.9 30 1-30 21-51 (53)
42 1lf6_A Glucoamylase; (alpha/al 72.5 0.42 1.4E-05 37.9 -1.4 37 4-40 344-382 (684)
43 3q7a_B Farnesyltransferase bet 72.4 1 3.5E-05 35.5 0.8 24 15-38 213-236 (520)
44 3q7a_B Farnesyltransferase bet 71.9 1.9 6.6E-05 34.0 2.2 19 19-37 169-187 (520)
45 3rrs_A Cellobiose phosphorylas 71.7 2.6 8.7E-05 34.4 3.0 68 4-72 368-438 (822)
46 1ify_A HHR23A, UV excision rep 71.5 0.82 2.8E-05 24.8 0.0 28 1-28 18-45 (49)
47 2cpw_A CBL-interacting protein 70.9 0.79 2.7E-05 26.3 -0.1 32 1-32 29-61 (64)
48 2b39_A C3; thioester, immune d 70.2 1.3 4.3E-05 38.4 0.9 25 15-39 1095-1120(1661)
49 1veg_A NEDD8 ultimate buster-1 69.7 0.58 2E-05 28.7 -1.0 31 1-31 39-69 (83)
50 1wiv_A UBP14, ubiquitin-specif 69.7 0.63 2.2E-05 27.5 -0.8 32 1-32 39-70 (73)
51 3cu7_A Complement C5; Mg domai 69.0 1.4 4.7E-05 38.1 0.9 25 15-39 1096-1121(1676)
52 1whc_A RSGI RUH-027, UBA/UBX 3 66.3 0.92 3.1E-05 26.0 -0.5 32 1-32 19-51 (64)
53 2crn_A Ubash3A protein; compac 65.8 1.2 4.1E-05 25.6 -0.1 32 1-32 19-51 (64)
54 2dak_A Ubiquitin carboxyl-term 65.2 0.7 2.4E-05 26.2 -1.2 32 1-32 19-50 (63)
55 2g3q_A Protein YBL047C; endocy 65.1 0.66 2.3E-05 24.2 -1.2 28 1-28 14-41 (43)
56 2dai_A Ubadc1, ubiquitin assoc 64.8 1.1 3.8E-05 27.1 -0.4 32 1-32 39-70 (83)
57 1wgn_A UBAP1, ubiquitin associ 64.0 0.48 1.6E-05 27.9 -2.1 32 1-32 29-60 (63)
58 2dag_A Ubiquitin carboxyl-term 63.1 1.1 3.9E-05 26.4 -0.6 32 1-32 19-51 (74)
59 2dna_A Unnamed protein product 62.6 4.5 0.00015 23.7 2.0 18 17-34 46-63 (67)
60 2bb6_A TCII, TC II, transcobal 61.0 3.2 0.00011 31.8 1.5 28 16-43 201-232 (414)
61 1vek_A UBP14, ubiquitin-specif 60.9 1.9 6.4E-05 26.0 0.1 32 1-32 39-71 (84)
62 2ekk_A UBA domain from E3 ubiq 59.0 0.64 2.2E-05 24.8 -2.0 28 1-29 19-46 (47)
63 2lbc_A Ubiquitin carboxyl-term 53.2 4 0.00014 25.7 0.7 32 1-32 13-45 (126)
64 2jy5_A Ubiquilin-1; UBA, alter 51.4 1.1 3.9E-05 24.6 -1.8 28 1-28 22-50 (52)
65 1v7w_A Chitobiose phosphorylas 51.0 14 0.00049 29.1 3.7 32 4-35 350-382 (807)
66 3jyu_A Ubiquitin carboxyl-term 50.9 2 7E-05 29.8 -1.0 23 18-40 208-230 (231)
67 3e6u_A LANC-like protein 1; al 50.2 9.5 0.00032 28.1 2.4 23 17-39 254-276 (411)
68 2pmv_A Gastric intrinsic facto 50.1 4.7 0.00016 30.8 0.8 27 17-43 183-209 (399)
69 2dkl_A Trinucleotide repeat co 47.3 2.8 9.7E-05 25.4 -0.7 32 1-32 31-62 (85)
70 4a3p_A Ubiquitin carboxyl-term 45.8 2.7 9.1E-05 28.8 -1.1 18 22-39 200-217 (217)
71 2bb6_A TCII, TC II, transcobal 43.0 8 0.00027 29.6 1.1 33 4-37 227-269 (414)
72 1nzn_A CGI-135 protein, fissio 39.7 8.8 0.0003 24.7 0.8 25 8-32 41-67 (126)
73 2gz6_A N-acetyl-D-glucosamine 37.4 43 0.0015 23.5 4.1 52 17-71 77-130 (388)
74 1z96_A DNA-damage, UBA-domain 35.4 3.9 0.00013 20.4 -1.2 26 1-26 14-39 (40)
75 2b4n_A Gastric inhibitory poly 35.2 26 0.00088 18.9 2.1 21 17-37 17-37 (42)
76 3o48_A Mitochondria fission 1 35.1 7.7 0.00026 25.5 -0.1 24 9-32 47-72 (134)
77 4ae4_A Ubiquitin-associated pr 31.9 8.5 0.00029 24.4 -0.3 14 17-30 102-115 (118)
78 2dah_A Ubiquilin-3; UBA domain 31.4 29 0.001 18.9 2.0 14 18-31 37-50 (54)
79 3gt5_A N-acetylglucosamine 2-e 29.9 50 0.0017 23.8 3.5 51 17-70 75-127 (402)
80 1vej_A Riken cDNA 4931431F19; 29.7 27 0.00092 20.5 1.7 15 18-32 57-71 (74)
81 1y8m_A FIS1; mitochondria, unk 26.0 15 0.00053 24.3 0.2 26 7-32 44-71 (144)
82 3pmm_A Putative cytoplasmic pr 24.8 1.1E+02 0.0038 22.2 4.7 55 17-72 320-381 (382)
83 3ren_A Glycosyl hydrolase, fam 24.7 39 0.0013 25.2 2.2 52 14-68 297-348 (350)
84 2bwb_A Ubiquitin-like protein 23.8 33 0.0011 18.0 1.3 11 18-28 35-45 (46)
85 1dv0_A DNA repair protein HHR2 23.7 16 0.00056 19.4 -0.0 29 1-29 14-42 (47)
86 1wj7_A Hypothetical protein (R 22.8 55 0.0019 20.6 2.3 21 18-38 67-87 (104)
87 1wr1_B Ubiquitin-like protein 21.5 48 0.0016 18.4 1.7 12 18-29 45-56 (58)
88 1nc5_A Hypothetical protein YT 21.4 52 0.0018 23.6 2.3 20 19-38 243-263 (373)
89 2cp8_A NEXT to BRCA1 gene 1 pr 20.3 30 0.001 19.3 0.6 20 14-33 33-52 (54)
No 1
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.80 E-value=1.2e-20 Score=148.62 Aligned_cols=70 Identities=27% Similarity=0.527 Sum_probs=64.1
Q ss_pred CcccccccC-------CCCchHHHHHHHHHHhcccCCCCCCcceece-eccceeccCCCchhhHhHHHHHHHHHHhcC
Q 034929 5 GFNSCWTDG-------KRSYSSSPCCKLLINSQLEDGDFPQQELTGA-FMGNCMLHYPTYRNIFPMWALAEYRSKFQS 74 (78)
Q Consensus 5 ~~QTAWAl~-------~~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~-f~~~~yi~Y~~Yr~~fPl~ALg~Y~~~~~~ 74 (78)
.++|||||+ .+.++|+||++||+++|++||.|+++..||+ ||++|||+||+|+++|||||||+|++++..
T Consensus 553 v~~Ta~ALlaL~~ag~~~~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~~yl~y~~y~~~f~l~AL~~y~~~~~~ 630 (631)
T 2sqc_A 553 PSQTAWALMALIAGGRAESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALGRYKQAIER 630 (631)
T ss_dssp HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTEEEEETTHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHhccCCCCCcCCCCcccccccccceeeccchhhHHHHHHHHHHHHHhhc
Confidence 457999985 3457899999999999999999999999999 999999999999999999999999998753
No 2
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.79 E-value=2.2e-20 Score=150.05 Aligned_cols=74 Identities=31% Similarity=0.747 Sum_probs=66.6
Q ss_pred CCcccccccC-------CCCchHHHHHHHHHHhcccCCCCCCcceeceeccceeccCCCchhhHhHHHHHHHHHHhcCCC
Q 034929 4 DGFNSCWTDG-------KRSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCMLHYPTYRNIFPMWALAEYRSKFQSPK 76 (78)
Q Consensus 4 ~~~QTAWAl~-------~~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y~~~~~~~~ 76 (78)
+.+||||||+ .+.++|+|||+||+++|++||+|+++.++|+||++|||+||+|+++|||+||++|++++...+
T Consensus 648 ~v~~TAwALlALl~ag~~~~~~i~r~v~wL~~~Q~~~Ggf~~~~~~g~f~~~~~i~Y~~y~~~fpl~AL~~y~~~~~~~~ 727 (732)
T 1w6k_A 648 QIHNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNIFPIWALGRFSQLYPERA 727 (732)
T ss_dssp CHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCTTSCCCCCSCCEEETTTEEECCTTHHHHHHHHHHHHHHHHCTTSG
T ss_pred CHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCCcccccccchhhhcccchhHHHHHHHHHHHHHhcchhh
Confidence 4468999996 345689999999999999999999999999999999999999999999999999999876654
Q ss_pred C
Q 034929 77 I 77 (78)
Q Consensus 77 ~ 77 (78)
|
T Consensus 728 ~ 728 (732)
T 1w6k_A 728 L 728 (732)
T ss_dssp G
T ss_pred c
Confidence 3
No 3
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=98.38 E-value=1.1e-07 Score=68.47 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=42.9
Q ss_pred cccccccC-----CCCchHHHHHHHHHHhcccCCCCCCcceeceeccceeccCCCchhhHhHHHHHHHHHHhcC
Q 034929 6 FNSCWTDG-----KRSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCMLHYPTYRNIFPMWALAEYRSKFQS 74 (78)
Q Consensus 6 ~QTAWAl~-----~~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y~~~~~~ 74 (78)
.+|||||+ .+.+.+.++|+||+++|+++|.|... ...+.+|+||++|.++...
T Consensus 238 e~Ta~aLlal~~~~~~~~~~~~v~wL~~qq~~~Ggw~sT----------------q~T~~aL~AL~~y~~~~~~ 295 (310)
T 2wy7_A 238 EATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGST----------------QATFMVFQALAQYQKDAPD 295 (310)
T ss_dssp HHHHHHHHHHHHHTCTTTHHHHHHHHHHTTCCCCSTTCH----------------HHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHccCCCCCeecc----------------HHHHHHHHHHHHHHHHcCC
Confidence 48999996 45678999999999999999999632 3345799999999887654
No 4
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=98.09 E-value=1.5e-06 Score=61.40 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=41.4
Q ss_pred cccccccC-----CCCchHHHHHHHHHHhcccCCCCCCcceeceeccceeccCCCchhhHhHHHHHHHHHH
Q 034929 6 FNSCWTDG-----KRSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCMLHYPTYRNIFPMWALAEYRSK 71 (78)
Q Consensus 6 ~QTAWAl~-----~~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y~~~ 71 (78)
.+|||||+ .+.+.+.++|+||+++|+++|.|... .-.+..|.||++|..+
T Consensus 222 e~Ta~aLlal~~~~~~~~~~~~v~wL~~qq~~~Ggw~sT----------------q~T~~aL~AL~~y~~~ 276 (277)
T 1qqf_A 222 EATSYALLALLLLKDFDSVPPVVRWLNDERYYGGGYGST----------------QATFMVFQALAQYRAD 276 (277)
T ss_dssp HHHHHHHHHHHHTTCTTSHHHHHHHHHHCCCCTTSTTCH----------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHccCCCCCeecc----------------hHHHHHHHHHHHHHHh
Confidence 47999996 45578999999999999999999633 3456899999999765
No 5
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=97.51 E-value=4.6e-05 Score=56.16 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=41.5
Q ss_pred cccccccC------CCCchHHHHHHHHHHhcccCCCCCCcceeceeccceeccCCCchhhHhHHHHHHHHHHh
Q 034929 6 FNSCWTDG------KRSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCMLHYPTYRNIFPMWALAEYRSKF 72 (78)
Q Consensus 6 ~QTAWAl~------~~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y~~~~ 72 (78)
.+|||||+ .+.+.+.+.|+||++.|+.+|.|... .-.+..|.||++|....
T Consensus 307 E~TAyaLLall~~~~~~~~~~~iv~WL~~qrn~~Ggw~sT----------------qdTvvAL~AL~~y~~~~ 363 (367)
T 1hzf_A 307 ETTAYALLHLLLHEGKAEMADQASAWLTRQGSFQGGFRST----------------QDTVIALDALSAYWIAS 363 (367)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTSTTCSCSH----------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhhhHHHHHHHHhCcCCCCCcccH----------------HHHHHHHHHHHHHHHHc
Confidence 47899996 45678999999999999999999533 34568999999997654
No 6
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=97.26 E-value=8.9e-05 Score=62.03 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=41.3
Q ss_pred cccccccC-----CCCchHHHHHHHHHHhcccCCCCCCcceeceeccceeccCCCchhhHhHHHHHHHHHHhc
Q 034929 6 FNSCWTDG-----KRSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCMLHYPTYRNIFPMWALAEYRSKFQ 73 (78)
Q Consensus 6 ~QTAWAl~-----~~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y~~~~~ 73 (78)
.+|||||+ .+.+.+.++++||+++|+.+|.|.... -.+++|+||++|.+...
T Consensus 1050 e~tA~aLlall~~~~~~~~~~~v~wL~~q~~~~g~w~sTq----------------~T~~aL~AL~~y~~~~~ 1106 (1325)
T 2pn5_A 1050 ETTAYALLSFVMAEKYTDGIPVMNWLVNQRYVTGSFPSTQ----------------DTFVGLKALTKMAEKIS 1106 (1325)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTSSCSSHH----------------HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhhccchhhHHHHHHHHhccCCCCCccchH----------------HHHHHHHHHHHHHHHcC
Confidence 47899985 344678999999999999999996332 24599999999987643
No 7
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=97.02 E-value=0.00028 Score=57.48 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=41.3
Q ss_pred ccccccC-----CCCchHHHHHHHHHHhcccCCCCCCcceeceeccceeccCCCchhhHhHHHHHHHHHHhcC
Q 034929 7 NSCWTDG-----KRSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCMLHYPTYRNIFPMWALAEYRSKFQS 74 (78)
Q Consensus 7 QTAWAl~-----~~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y~~~~~~ 74 (78)
+|||||+ .+.+.+.++++||+++|+.+|.|... .-.++.|+||++|.+....
T Consensus 484 ~TayaLlall~~~~~~~~~~~v~wL~~qq~~~Ggw~ST----------------QdT~~Al~AL~~y~~~~~~ 540 (915)
T 2hr0_B 484 ATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGST----------------QATFMVFQALAQYQKDAPD 540 (915)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHHTCCCSSSSCCSH----------------HHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcccCCCCccch----------------hhHHHHHHHHHHHHHHcCc
Confidence 6899996 44567999999999999999999532 2256889999999876543
No 8
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=96.96 E-value=0.00011 Score=56.37 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=27.9
Q ss_pred CCcccccccC-------CCCchHHHHHHHHHHhcc-cCCCC
Q 034929 4 DGFNSCWTDG-------KRSYSSSPCCKLLINSQL-EDGDF 36 (78)
Q Consensus 4 ~~~QTAWAl~-------~~~~~I~rGi~~Li~~Q~-~dG~W 36 (78)
++.||+|||. .+..+++|+++||+++|. ++|.|
T Consensus 248 h~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~rQ~~~~GGf 288 (437)
T 2h6f_B 248 HGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGF 288 (437)
T ss_dssp CHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSB
T ss_pred CccHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCCCCCc
Confidence 4589999985 445689999999999998 77887
No 9
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=96.62 E-value=0.00092 Score=50.32 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.8
Q ss_pred CchHHHHHHHHHHhcccCCCCCCccee
Q 034929 16 SYSSSPCCKLLINSQLEDGDFPQQELT 42 (78)
Q Consensus 16 ~~~I~rGi~~Li~~Q~~dG~W~q~~~t 42 (78)
.++|+||++||++.|.+||.|+|=.+.
T Consensus 96 ~~Ai~Rgl~wlL~mQ~~nGGWpqFdpd 122 (332)
T 1gxm_A 96 RDAVRKAANFLVNSQYSTGALPQFYPL 122 (332)
T ss_dssp HHHHHHHHHHHHHHCCTTSCCBSEESC
T ss_pred HHHHHHHHHHHHhccCCCCCccccCCC
Confidence 478999999999999999999877653
No 10
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=96.60 E-value=0.00027 Score=52.14 Aligned_cols=45 Identities=16% Similarity=0.126 Sum_probs=32.3
Q ss_pred CCcccccccC-------CCCchHHHHHHHHHHhcccCCCCCCcceeceecccee
Q 034929 4 DGFNSCWTDG-------KRSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCM 50 (78)
Q Consensus 4 ~~~QTAWAl~-------~~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~y 50 (78)
++.+|+||+. .+...++|+++||+++|.+||.|... ++..+..||
T Consensus 190 h~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~dGGf~gr--~~k~~D~cy 241 (331)
T 3dss_B 190 HAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGR--PEKLPDVCY 241 (331)
T ss_dssp CHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSS--TTCCCCHHH
T ss_pred cHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCCCCCcCCC--CCCCCcchh
Confidence 3568999974 33456999999999999999999432 233444554
No 11
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=96.18 E-value=0.0036 Score=48.17 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=23.3
Q ss_pred chHHHHHHHHHHhcccCCCCCCccee
Q 034929 17 YSSSPCCKLLINSQLEDGDFPQQELT 42 (78)
Q Consensus 17 ~~I~rGi~~Li~~Q~~dG~W~q~~~t 42 (78)
++|+||++||++.|.+||.|+|-++.
T Consensus 175 ~Ai~Rgl~wlL~mQ~~nGGWpqFdpd 200 (408)
T 1r76_A 175 DAALKGIEYLLASQFPNGGWPQVWPL 200 (408)
T ss_dssp HHHHHHHHHHHHHSCTTSCCBSBSSC
T ss_pred HHHHHHHHHHHHccCCCCCCcCcCcc
Confidence 68999999999999999999877653
No 12
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=96.16 E-value=0.00098 Score=51.12 Aligned_cols=34 Identities=6% Similarity=-0.134 Sum_probs=27.4
Q ss_pred cccccccC-----CCCchHHHHHHHHHHhcccCCCCCCc
Q 034929 6 FNSCWTDG-----KRSYSSSPCCKLLINSQLEDGDFPQQ 39 (78)
Q Consensus 6 ~QTAWAl~-----~~~~~I~rGi~~Li~~Q~~dG~W~q~ 39 (78)
+.+||+.+ .+.+.++|+++||++.|++||.|.+.
T Consensus 204 ty~A~~~L~llg~~~~~~v~k~~~~L~s~Q~~DGGwg~~ 242 (437)
T 2h6f_B 204 AYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGV 242 (437)
T ss_dssp HHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSS
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHccCCCCCcCCC
Confidence 45666653 45678999999999999999999754
No 13
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=95.99 E-value=0.0015 Score=50.29 Aligned_cols=33 Identities=15% Similarity=-0.044 Sum_probs=23.1
Q ss_pred Cccccccc---C---CCCc----hHHHHHHHHHHhcccCCCCC
Q 034929 5 GFNSCWTD---G---KRSY----SSSPCCKLLINSQLEDGDFP 37 (78)
Q Consensus 5 ~~QTAWAl---~---~~~~----~I~rGi~~Li~~Q~~dG~W~ 37 (78)
++||+|+| | ..++ +|+|||+||.+.|.+||.|.
T Consensus 292 ~~esa~il~~LM~~~~~~~~~~~aI~~Av~WL~s~Q~~dg~w~ 334 (408)
T 1r76_A 292 STESARILLFLMEIEAPSDAVKQAIRGGVAWLNTSVIRDRAWV 334 (408)
T ss_dssp HHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHSCCCC----
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhcCCCcee
Confidence 67888884 4 2222 79999999999999999996
No 14
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=95.02 E-value=0.012 Score=46.18 Aligned_cols=52 Identities=15% Similarity=-0.017 Sum_probs=35.0
Q ss_pred ccccccC--------CCCchHHHHHHHHHHhcccCCCCCCcceeceeccceeccCCCchhhHhHHHHHHH
Q 034929 7 NSCWTDG--------KRSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCMLHYPTYRNIFPMWALAEY 68 (78)
Q Consensus 7 QTAWAl~--------~~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y 68 (78)
-||.+|. ...+.|+||++||++.|++||.|.... | .+ ..|--.+-+.||+..
T Consensus 448 ~Ta~vl~aL~~~g~~~~~~~i~rai~~L~~~Q~~DGsw~g~w--g----~~----~~y~Ta~~l~aL~~~ 507 (631)
T 2sqc_A 448 VTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRW--G----VN----YLYGTGAVVSALKAV 507 (631)
T ss_dssp HHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSS--B----SS----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCCCCCCCCC--C----CC----chHHHHHHHHHHHHh
Confidence 3677663 235789999999999999999994321 1 11 124556777777654
No 15
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=94.87 E-value=0.0021 Score=48.46 Aligned_cols=30 Identities=10% Similarity=-0.003 Sum_probs=21.7
Q ss_pred CcccccccC-------CCC----chHHHHHHHHHHhcccCCCC
Q 034929 5 GFNSCWTDG-------KRS----YSSSPCCKLLINSQLEDGDF 36 (78)
Q Consensus 5 ~~QTAWAl~-------~~~----~~I~rGi~~Li~~Q~~dG~W 36 (78)
+.||+||+. .+. .+++|+++||+++| +|.+
T Consensus 220 ~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ--~gGf 260 (377)
T 1n4q_B 220 GGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGY 260 (377)
T ss_dssp HHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSB
T ss_pred hhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHhcC--CCCc
Confidence 568977763 111 27999999999999 5554
No 16
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=94.74 E-value=0.0086 Score=48.23 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHhcccCCCCCCcc
Q 034929 17 YSSSPCCKLLINSQLEDGDFPQQE 40 (78)
Q Consensus 17 ~~I~rGi~~Li~~Q~~dG~W~q~~ 40 (78)
+.|+||++||++.|++||.|.+..
T Consensus 610 ~~i~rav~~Lls~Q~~DGGWge~~ 633 (732)
T 1w6k_A 610 AEVSRACDFLLSRQMADGGWGEDF 633 (732)
T ss_dssp HHHHHHHHHHHTTCCTTSCCCBCT
T ss_pred HHHHHHHHHHHHhcccCCCCCCCC
Confidence 689999999999999999997643
No 17
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=94.67 E-value=0.012 Score=48.12 Aligned_cols=33 Identities=15% Similarity=0.410 Sum_probs=25.7
Q ss_pred ccccccC-C-----CCchHHHHHHHHHHhcccCCCCCCc
Q 034929 7 NSCWTDG-K-----RSYSSSPCCKLLINSQLEDGDFPQQ 39 (78)
Q Consensus 7 QTAWAl~-~-----~~~~I~rGi~~Li~~Q~~dG~W~q~ 39 (78)
.|||..| + ..+---..++||+++|.+||.|...
T Consensus 58 DTAWVamvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~ 96 (785)
T 3s9v_A 58 DTAWVARIPAVDGSDNPHFPETVEWILQNQLKDGSWGEG 96 (785)
T ss_dssp HHHHHTTSBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCS
T ss_pred HhhHHhccccCCCCCCCCchHHHHHHHHccCCCCCCCCC
Confidence 5999776 1 2244578999999999999999643
No 18
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=94.17 E-value=0.017 Score=42.34 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.9
Q ss_pred CCchHHHHHHHHHHhcccCCCCCCc
Q 034929 15 RSYSSSPCCKLLINSQLEDGDFPQQ 39 (78)
Q Consensus 15 ~~~~I~rGi~~Li~~Q~~dG~W~q~ 39 (78)
+.+.|+||++||++.|++||.|.+.
T Consensus 140 ~~~~i~~a~~~L~~~Q~~dG~~~~~ 164 (367)
T 1hzf_A 140 SPEKLQETSNWLLSQQQADGSFQDP 164 (367)
T ss_dssp CHHHHHHHHHHHGGGBCTTSCBCCS
T ss_pred CHHHHHHHHHHHHHhhccCCCcccc
Confidence 4578999999999999999999653
No 19
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=94.17 E-value=0.016 Score=47.17 Aligned_cols=32 Identities=19% Similarity=0.447 Sum_probs=25.1
Q ss_pred ccccccC-C---CCchHHHHHHHHHHhcccCCCCCC
Q 034929 7 NSCWTDG-K---RSYSSSPCCKLLINSQLEDGDFPQ 38 (78)
Q Consensus 7 QTAWAl~-~---~~~~I~rGi~~Li~~Q~~dG~W~q 38 (78)
.|||..| + ..|.--..++||+++|.+||.|..
T Consensus 36 DTAWVAmvp~~~~~p~Fp~~~~wil~nQ~~DGsWG~ 71 (727)
T 3pya_A 36 DTAWVALIDAGDKTPAFPSAVKWIAENQLSDGSWGD 71 (727)
T ss_dssp HHHHHHTCBCSSSSBSCHHHHHHHHHTCCTTSCCSC
T ss_pred HhHHHhhccCCCCCCCCHHHHHHHHhcCCCCCCCCC
Confidence 4999767 2 223467799999999999999964
No 20
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=94.14 E-value=0.016 Score=47.59 Aligned_cols=33 Identities=18% Similarity=0.405 Sum_probs=25.7
Q ss_pred ccccccC------CCCchHHHHHHHHHHhcccCCCCCCc
Q 034929 7 NSCWTDG------KRSYSSSPCCKLLINSQLEDGDFPQQ 39 (78)
Q Consensus 7 QTAWAl~------~~~~~I~rGi~~Li~~Q~~dG~W~q~ 39 (78)
.|||..| ...+---..++||+++|.+||.|...
T Consensus 85 DTAWVAmvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~ 123 (817)
T 3sdr_A 85 DTAWVARVPAIDGSARPQFPQTVDWILKNQLKDGSWGIQ 123 (817)
T ss_dssp HHHHHHTCBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCT
T ss_pred HhhHHheeecCCCCCCCCchHHHHHHHHccCCCCCCCCC
Confidence 5999766 12344588999999999999999643
No 21
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=94.04 E-value=0.024 Score=39.57 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=21.2
Q ss_pred CCchHHHHHHHHHH-hcccCCCCCCc
Q 034929 15 RSYSSSPCCKLLIN-SQLEDGDFPQQ 39 (78)
Q Consensus 15 ~~~~I~rGi~~Li~-~Q~~dG~W~q~ 39 (78)
+.+.|+||++||++ .|++||.|.+.
T Consensus 87 ~~~~i~~a~~~L~~~~Q~~dG~f~~~ 112 (277)
T 1qqf_A 87 DSQVLCGAVKWLILEKQKPDGVFQED 112 (277)
T ss_dssp CHHHHHHHHHHHHHHHBCTTSCBCCS
T ss_pred CHHHHHHHHHHHHHhccCCCCCccCC
Confidence 34689999999995 99999999654
No 22
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=93.78 E-value=0.014 Score=50.13 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=39.9
Q ss_pred ccccccC----C-------CCchHHHHHHHHHHhcccCCCCCCcceeceeccceeccCCCchhhHhHHHHHHHHHHhcC
Q 034929 7 NSCWTDG----K-------RSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCMLHYPTYRNIFPMWALAEYRSKFQS 74 (78)
Q Consensus 7 QTAWAl~----~-------~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y~~~~~~ 74 (78)
.|||||+ . +.+.+.+.++||+++|+.+|.|.... .-++.|.||++|..+...
T Consensus 1185 ~TayaLLall~~~~~~~~~d~~~a~~iv~WL~~qr~~~Ggf~STQ----------------dTv~aL~ALa~Y~~~~~~ 1247 (1451)
T 4acq_A 1185 MTSYVLLAYLTAQPAPTSEDLTSATNIVKWITKQQNAQGGFSSTQ----------------DTVVALHALSKYGAATFT 1247 (1451)
T ss_dssp HHHHHHHHHHCCSSCCCHHHHHHHHTTHHHHTTCCCTTSCCSSHH----------------HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHcCCCCCCcccHH----------------HHHHHHHHHHHHHHhcCC
Confidence 5899986 2 12468899999999999999995322 356889999999887543
No 23
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=93.77 E-value=0.011 Score=43.52 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=22.4
Q ss_pred CCCchHHHHHHHHHHhcccCCCCCCc
Q 034929 14 KRSYSSSPCCKLLINSQLEDGDFPQQ 39 (78)
Q Consensus 14 ~~~~~I~rGi~~Li~~Q~~dG~W~q~ 39 (78)
.+.+.++|+++||++.|++||.|.+.
T Consensus 159 ~~~~~~~k~v~~L~s~Q~~dGGfg~~ 184 (331)
T 3dss_B 159 LDAINVEKAIEFVLSCMNFDGGFGCR 184 (331)
T ss_dssp GGGSCHHHHHHHHHTTBCTTSCBCSS
T ss_pred CCHHHHHHHHHHHHHhCcCCCCcCCC
Confidence 44578999999999999999999654
No 24
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=93.61 E-value=0.052 Score=43.05 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=39.2
Q ss_pred cccccC------CCCchHHHHHHHHHHhcccCCCCCCcceeceeccceeccCCCchhhHhHHHHHHHHHHhc
Q 034929 8 SCWTDG------KRSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCMLHYPTYRNIFPMWALAEYRSKFQ 73 (78)
Q Consensus 8 TAWAl~------~~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y~~~~~ 73 (78)
||.||+ ++.+.+.+-++||++.|+.+|.|. .....++.|.||++|.....
T Consensus 586 tayaLla~l~~~~~~~~a~~iv~WL~~Qr~~~Ggf~----------------STQdTv~AL~ALa~y~~~~~ 641 (767)
T 4fxk_B 586 TAYALLHLLLHEGKAEMADQASAWLTRQGSFQGGFR----------------STQDTVIALDALSAYWIASH 641 (767)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHTCCTTSSCS----------------SHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCCCc----------------CHHHHHHHHHHHHHHHHhcc
Confidence 477774 456678899999999999999994 23346899999999976544
No 25
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=93.30 E-value=0.038 Score=39.28 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=21.2
Q ss_pred CCchHHHHHHHHHH-hcccCCCCCCc
Q 034929 15 RSYSSSPCCKLLIN-SQLEDGDFPQQ 39 (78)
Q Consensus 15 ~~~~I~rGi~~Li~-~Q~~dG~W~q~ 39 (78)
+.+.|+||++||++ .|++||.|.+.
T Consensus 103 ~~~~i~~a~~~L~~~~Q~~dGsf~~~ 128 (310)
T 2wy7_A 103 DSQVLCGAVKWLILEKQKPDGVFQED 128 (310)
T ss_dssp CHHHHHHHHHHHHHHHBCTTSCBCCS
T ss_pred CHHHHHHHHHHHHHhhcCCCCccccC
Confidence 34689999999995 99999999654
No 26
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=92.76 E-value=0.041 Score=41.36 Aligned_cols=30 Identities=7% Similarity=0.072 Sum_probs=25.3
Q ss_pred CchHHHHHHHHHHhcccCC----CCCCcceecee
Q 034929 16 SYSSSPCCKLLINSQLEDG----DFPQQELTGAF 45 (78)
Q Consensus 16 ~~~I~rGi~~Li~~Q~~dG----~W~q~~~tG~f 45 (78)
.++|+|||+||++.|.++| .|-++++.|++
T Consensus 168 ~~av~Rgid~Llk~Qe~dggw~g~Wg~qydygT~ 201 (332)
T 1gxm_A 168 KTAVTKGTDYILKAQWKQNGVLTVWCAQHGALDY 201 (332)
T ss_dssp HHHHHHHHHHHHHHSCEETTEECCCCSEECTTTC
T ss_pred HHHHHHHHHHHHHhhCccCCCcCeeccccccccc
Confidence 4789999999999999987 56777877774
No 27
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=92.31 E-value=0.025 Score=46.16 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=24.9
Q ss_pred ccccccC---C--C---CchHHHHHHHHHHhcccCCCCCC
Q 034929 7 NSCWTDG---K--R---SYSSSPCCKLLINSQLEDGDFPQ 38 (78)
Q Consensus 7 QTAWAl~---~--~---~~~I~rGi~~Li~~Q~~dG~W~q 38 (78)
.|||..| . + .|---..++||+++|.+||.|..
T Consensus 35 DTAWVamvp~~~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~ 74 (764)
T 3p5p_A 35 DTAWVARLATISSDGSEKPRFPQALNWVFNNQLQDGSWGI 74 (764)
T ss_dssp HHHHHHHCEEECTTSCEEESCHHHHHHHHHCCCTTSCCSC
T ss_pred HHHHHHhCccccCCCCCCCCChHHHHHHHHccCCCCCCCC
Confidence 4899656 2 2 13577899999999999999964
No 28
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=91.15 E-value=0.049 Score=46.78 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=22.0
Q ss_pred CCchHHHHHHHHHHhcccCCCCCCc
Q 034929 15 RSYSSSPCCKLLINSQLEDGDFPQQ 39 (78)
Q Consensus 15 ~~~~I~rGi~~Li~~Q~~dG~W~q~ 39 (78)
+.+.|.||++||+++|++||.|.+.
T Consensus 1036 ~~~~l~~a~~wL~~~Q~~dG~f~~~ 1060 (1451)
T 4acq_A 1036 DEAHITQALIWLSQRQKDNGCFRSS 1060 (1451)
T ss_dssp CTHHHHHHHHHHHHTEETTTEECCC
T ss_pred CHHHHHHHHHHHHhhcccCCccccc
Confidence 5678999999999999999999643
No 29
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=90.52 E-value=0.21 Score=43.11 Aligned_cols=51 Identities=24% Similarity=0.208 Sum_probs=38.9
Q ss_pred ccccccC-----CCCchHHHHHHHHHHhcccCCCCCCcceeceeccceeccCCCchhhHhHHHHHHHHHHhc
Q 034929 7 NSCWTDG-----KRSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCMLHYPTYRNIFPMWALAEYRSKFQ 73 (78)
Q Consensus 7 QTAWAl~-----~~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y~~~~~ 73 (78)
-||+||+ .+.+.+.+-++||++.|+.+|.|.- ....++.|.||++|.....
T Consensus 1250 ~tayaLlall~~~~~~~~~~iv~wL~~qr~~~Gg~~S----------------TQdT~~Al~AL~~y~~~~~ 1305 (1676)
T 3cu7_A 1250 TTAYALLTSLNLKDINYVNPVIKWLSEEQRYGGGFYS----------------TQDTINAIEGLTEYSLLVK 1305 (1676)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSSSCCST----------------TTTHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccc----------------cHHHHHHHHHHHHHHHHcC
Confidence 3588885 3445678899999998888899952 2446799999999976553
No 30
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=89.56 E-value=0.17 Score=38.04 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=22.2
Q ss_pred CCchHHHHHHHHHHhcccCCCCCCc
Q 034929 15 RSYSSSPCCKLLINSQLEDGDFPQQ 39 (78)
Q Consensus 15 ~~~~I~rGi~~Li~~Q~~dG~W~q~ 39 (78)
..+.++|+++||++.|+.||.|-+.
T Consensus 189 ~~~~v~ka~~fL~scQn~DGGfGe~ 213 (377)
T 1n4q_B 189 SGMDMKKAISYIRRSMSYDNGLAQG 213 (377)
T ss_dssp GGSCHHHHHHHHHHTBCTTSSBBSS
T ss_pred ChHHHHHHHHHHHHhcCCCCCCCCC
Confidence 4578999999999999999999664
No 31
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=89.15 E-value=0.17 Score=43.62 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=38.9
Q ss_pred ccccccC-----CCCchHHHHHHHHHHhcccCCCCCCcceeceeccceeccCCCchhhHhHHHHHHHHHHhc
Q 034929 7 NSCWTDG-----KRSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCMLHYPTYRNIFPMWALAEYRSKFQ 73 (78)
Q Consensus 7 QTAWAl~-----~~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y~~~~~ 73 (78)
-||+||+ .+.+.+.+-++||++.|+.+|.|.- ....++.|.||++|.....
T Consensus 1231 ~tayaLlall~~~~~~~~~~iv~wL~~qr~~~gg~~S----------------TqdT~~Al~AL~~y~~~~~ 1286 (1661)
T 2b39_A 1231 ATSYALLALLARKDYDTTPPVVRWLNEQRYYGGGYGS----------------TQATFMVFQALAQYQKDVP 1286 (1661)
T ss_dssp HHHHHHHHHHHHTCTTTSHHHHHHHHHCCTBTTBBCS----------------HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcccCCCCccc----------------chHHHHHHHHHHHHHHHcC
Confidence 3688886 4556688899999998888899952 2335799999999986553
No 32
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=86.10 E-value=0.2 Score=40.79 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=20.4
Q ss_pred CchHHHHHHHHH-HhcccCCCCCCc
Q 034929 16 SYSSSPCCKLLI-NSQLEDGDFPQQ 39 (78)
Q Consensus 16 ~~~I~rGi~~Li-~~Q~~dG~W~q~ 39 (78)
...|+||++||. ++|.+||.|.+.
T Consensus 349 ~~~i~~al~~L~~~~Q~~dG~f~~~ 373 (915)
T 2hr0_B 349 SQVLCGAVKWLILEKQKPDGVFQED 373 (915)
T ss_dssp HHHHHHHHHHHHHHHBCTTSCBCCC
T ss_pred HHHHHHHHHHHHHhhccCCCccccC
Confidence 467999999999 599999999643
No 33
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=82.04 E-value=0.28 Score=42.88 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=0.0
Q ss_pred ccccccC-----CCCchHHHHHHHHHHhcccCCCCCCcceeceeccceeccCCCchhhHhHHHHHHHHHHhc
Q 034929 7 NSCWTDG-----KRSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCMLHYPTYRNIFPMWALAEYRSKFQ 73 (78)
Q Consensus 7 QTAWAl~-----~~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y~~~~~ 73 (78)
-||+||+ .+.+...+-|+||++.|+..|.|.- .---+..|.||++|..+..
T Consensus 1213 ~TaYaLLa~l~~~~~~~a~~iv~WL~~qr~~~Ggf~S----------------TQdTvvaLqALa~Y~~~~~ 1268 (1642)
T 3prx_B 1213 GTSYALLALLKMKKFDQTGPIVRWLTDQNFYGETYGQ----------------TQATVMAFQALAEYEIQMP 1268 (1642)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcccC----------------cHHHHHHHHHHHHHHHhcC
Confidence 4799997 3445678899999999999999842 1224568899999977644
No 34
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=80.59 E-value=0.72 Score=38.64 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=41.7
Q ss_pred CCcccccccC--CCCchHHHHHHHHHHhc-ccCCCCCCcc-eeceeccceeccCCCchhhHhHHHHHHHH
Q 034929 4 DGFNSCWTDG--KRSYSSSPCCKLLINSQ-LEDGDFPQQE-LTGAFMGNCMLHYPTYRNIFPMWALAEYR 69 (78)
Q Consensus 4 ~~~QTAWAl~--~~~~~I~rGi~~Li~~Q-~~dG~W~q~~-~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y~ 69 (78)
|.++|+.||+ -..+..++.++||.+.| .++|.|++.+ +.|. + .+-..-.-..-.+|+++.+|.
T Consensus 333 Daa~t~~all~~G~~e~A~~~l~~L~~~Q~~~~G~~~~~y~i~G~-~--~w~~~Q~D~~g~~l~~~~~~~ 399 (1020)
T 1ulv_A 333 DMYQSVTALLAAGDEEAAARGVEWLFTYQQQPDGHFPQTSRVDGT-I--GQNGIQLDETAFPILLANQIG 399 (1020)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTCCTTSCCCSCBCTTSC-B--CCCCCBTHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCeeeEEecCCC-c--CCCCccCccchHHHHHHHHHH
Confidence 6778888886 35677899999999999 8999998775 3333 1 111111122346777777763
No 35
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=79.95 E-value=0.36 Score=27.80 Aligned_cols=34 Identities=15% Similarity=0.110 Sum_probs=23.7
Q ss_pred CCCCCcccccccCCCCchHHHHHHHHHHhcccCC
Q 034929 1 MGYDGFNSCWTDGKRSYSSSPCCKLLINSQLEDG 34 (78)
Q Consensus 1 ~~~~~~QTAWAl~~~~~~I~rGi~~Li~~Q~~dG 34 (78)
|||+..+---||....-.++++++||++.+.+..
T Consensus 19 MGF~~~~a~~AL~~~~~nve~A~e~L~~~~~~~~ 52 (63)
T 1wji_A 19 MGFSKEASRQALMDNGNNLEAALNVLLTSNKQKP 52 (63)
T ss_dssp TTCCHHHHHHHHHHTTSCHHHHHHHHHHHSSCCC
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCcc
Confidence 6777666556665222369999999999876544
No 36
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=78.91 E-value=0.4 Score=41.97 Aligned_cols=53 Identities=23% Similarity=0.254 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHH-hcccCCCCCCcceeceecccee--c---cCCCchhhHhHHHHHHHH
Q 034929 15 RSYSSSPCCKLLIN-SQLEDGDFPQQELTGAFMGNCM--L---HYPTYRNIFPMWALAEYR 69 (78)
Q Consensus 15 ~~~~I~rGi~~Li~-~Q~~dG~W~q~~~tG~f~~~~y--i---~Y~~Yr~~fPl~ALg~Y~ 69 (78)
+...|.++++||++ +|++||.|.+... +|++... + .-...--.|-+.||.+..
T Consensus 1080 d~~~l~~~~~wL~~~~Q~~dG~F~e~~~--v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~ 1138 (1642)
T 3prx_B 1080 SHEIICGGVRWLILNRQQPDGAFKENAP--VLSGTMQGGIQGAEEEVYLTAFILVALLESK 1138 (1642)
T ss_dssp -------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHhhccCCCCccccccc--ccchhccCCccCCCCcccchHHHHHHHHhcc
Confidence 44679999999997 8999999965432 1332210 0 012233447777777654
No 37
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=78.83 E-value=0.24 Score=29.62 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=22.9
Q ss_pred CCCCCcccccccCCCCchHHHHHHHHHHhccc
Q 034929 1 MGYDGFNSCWTDGKRSYSSSPCCKLLINSQLE 32 (78)
Q Consensus 1 ~~~~~~QTAWAl~~~~~~I~rGi~~Li~~Q~~ 32 (78)
|||+-.+---||-...--++++++||++.+.+
T Consensus 39 MGF~r~~a~~AL~~~~~nve~Ave~Ll~~~~p 70 (73)
T 1vg5_A 39 MGFDRTQVEVALAAADDDLTVAVEILMSQSGP 70 (73)
T ss_dssp TTCCHHHHHHHHHHHTSCHHHHHHHHHTCSCS
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 77777777777652223689999999987654
No 38
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=77.65 E-value=1.1 Score=37.66 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=20.8
Q ss_pred CchHHHHHHHHHHhcccCCCCCCc
Q 034929 16 SYSSSPCCKLLINSQLEDGDFPQQ 39 (78)
Q Consensus 16 ~~~I~rGi~~Li~~Q~~dG~W~q~ 39 (78)
.+.++|+++||.++|++||.|.+.
T Consensus 923 ~~~l~~a~~~L~~~q~~dG~f~~~ 946 (1325)
T 2pn5_A 923 AAMVEKALDWLASKQHFSGRFDKA 946 (1325)
T ss_dssp HHHHHHHHHHHHHTCCTTSCCCCC
T ss_pred HHHHHHHHHHHHhhhccCCCcccc
Confidence 367999999999999999999543
No 39
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=76.44 E-value=0.73 Score=36.47 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.4
Q ss_pred CCchHHHHHHHHHHhcccCCCCCCc
Q 034929 15 RSYSSSPCCKLLINSQLEDGDFPQQ 39 (78)
Q Consensus 15 ~~~~I~rGi~~Li~~Q~~dG~W~q~ 39 (78)
+...|.++++||+++|.+||.|.+.
T Consensus 417 d~~~i~~a~~wL~~~Q~~~G~f~e~ 441 (767)
T 4fxk_B 417 SPEKLQETSNWLLSQQQADGSFQDP 441 (767)
T ss_dssp CHHHHHHHHHHHHHTBCTTSCBCCS
T ss_pred chHHHHHHHHHHHHhhhhcccchhc
Confidence 4467999999999999999999653
No 40
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=73.98 E-value=2.3 Score=34.52 Aligned_cols=67 Identities=18% Similarity=0.002 Sum_probs=44.8
Q ss_pred CCcccccccC-CCCchHHHHHHHHHHhcccCCCCCCcce--eceeccceec-cCCCchhhHhHHHHHHHHHHh
Q 034929 4 DGFNSCWTDG-KRSYSSSPCCKLLINSQLEDGDFPQQEL--TGAFMGNCML-HYPTYRNIFPMWALAEYRSKF 72 (78)
Q Consensus 4 ~~~QTAWAl~-~~~~~I~rGi~~Li~~Q~~dG~W~q~~~--tG~f~~~~yi-~Y~~Yr~~fPl~ALg~Y~~~~ 72 (78)
|..|.+.|+. ...+.+++-|..+.+.|.+||..+.... +|.-++ -+ .-.+=-..|+++|+.+|.+.-
T Consensus 361 D~~qd~~~~~~~~p~~~r~~il~~~~~Q~~dG~~~h~~~p~~~~g~~--~~~~~~~D~~lW~i~av~~Y~~~T 431 (811)
T 3qde_A 361 DSNQDLLGFVHQIPERARERLLDLAATQLEDGSAYHQYQPLTKKGNN--EIGSNFNDDPLWLILATAAYIKET 431 (811)
T ss_dssp HHHHHHHTTTTTCHHHHHHHHHHHHTTBCTTSCBCSEECTTTCCEEC--TTCCCBTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCccceecCCCCCCCC--CCCCCcccchhHHHHHHHHHHHHH
Confidence 5678888887 4556788889999999999999876543 221111 00 001223579999999997653
No 41
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=73.41 E-value=0.42 Score=26.46 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=19.8
Q ss_pred CCC-CCcccccccCCCCchHHHHHHHHHHhc
Q 034929 1 MGY-DGFNSCWTDGKRSYSSSPCCKLLINSQ 30 (78)
Q Consensus 1 ~~~-~~~QTAWAl~~~~~~I~rGi~~Li~~Q 30 (78)
||| |-.+-.-||-...=.+++||+||++.+
T Consensus 21 MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 21 MGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp TTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred cCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 677 655555565422226999999999854
No 42
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=72.52 E-value=0.42 Score=37.86 Aligned_cols=37 Identities=16% Similarity=0.102 Sum_probs=29.7
Q ss_pred CCcccccccC--CCCchHHHHHHHHHHhcccCCCCCCcc
Q 034929 4 DGFNSCWTDG--KRSYSSSPCCKLLINSQLEDGDFPQQE 40 (78)
Q Consensus 4 ~~~QTAWAl~--~~~~~I~rGi~~Li~~Q~~dG~W~q~~ 40 (78)
|..+|+.||. -..+..++.++||.+.|.++|.|++..
T Consensus 344 D~~~~~~al~~~G~~~~a~~~l~~l~~~q~~~G~~~~~~ 382 (684)
T 1lf6_A 344 DLYHVANAFIAAGDVDSANRSLDYLAKVVKDNGMIPQNT 382 (684)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSSCCSCB
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCcccce
Confidence 5567777776 356788999999999999999997653
No 43
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=72.39 E-value=1 Score=35.55 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=21.6
Q ss_pred CCchHHHHHHHHHHhcccCCCCCC
Q 034929 15 RSYSSSPCCKLLINSQLEDGDFPQ 38 (78)
Q Consensus 15 ~~~~I~rGi~~Li~~Q~~dG~W~q 38 (78)
+.+.++|+++||++.|+.||.|-+
T Consensus 213 ~~~~v~kav~fI~scQn~DGGfGe 236 (520)
T 3q7a_B 213 TPELLHNVDKFVSACQTYEGGFAC 236 (520)
T ss_dssp CHHHHTTHHHHHHTTBCTTSSBCS
T ss_pred ChHHHHHHHHHHHHhcCCCCCccC
Confidence 456799999999999999999976
No 44
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=71.90 E-value=1.9 Score=33.98 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcccCCCCC
Q 034929 19 SSPCCKLLINSQLEDGDFP 37 (78)
Q Consensus 19 I~rGi~~Li~~Q~~dG~W~ 37 (78)
++++++||.+.|++||.|-
T Consensus 169 r~k~v~fL~slQ~~DGSF~ 187 (520)
T 3q7a_B 169 RQSIYEFFMRCKRPDGGFV 187 (520)
T ss_dssp HHHHHHHHHHHBCTTSCBB
T ss_pred HHHHHHHHHHHhCCCCCEe
Confidence 6789999999999999993
No 45
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=71.75 E-value=2.6 Score=34.41 Aligned_cols=68 Identities=12% Similarity=-0.094 Sum_probs=44.6
Q ss_pred CCcccccccC-CCCchHHHHHHHHHHhcccCCCCCCcce--eceeccceeccCCCchhhHhHHHHHHHHHHh
Q 034929 4 DGFNSCWTDG-KRSYSSSPCCKLLINSQLEDGDFPQQEL--TGAFMGNCMLHYPTYRNIFPMWALAEYRSKF 72 (78)
Q Consensus 4 ~~~QTAWAl~-~~~~~I~rGi~~Li~~Q~~dG~W~q~~~--tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y~~~~ 72 (78)
|..|.+.|+. ...+.+++-+..+.+.|.+||..+.... +|.-++..- .-.+=-..|+++|+.+|.+.-
T Consensus 368 D~~qd~~~~~~~~pe~ar~~il~~~~~Q~~dG~v~h~~~p~~~~g~~~~~-~~~~D~~lWl~~av~~Yi~~T 438 (822)
T 3rrs_A 368 DSNQDLLGFVHLIPERARERIIDIASTQFADGSAYHQYQPLTKRGNNDIG-SGFNDDPLWLIAGTAAYIKET 438 (822)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHTTCCTTSCCCSEEETTTTEECTTTC-SCBTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhcccCcccceecCcCCCCccCCC-CcccchHhHHHHHHHHHHHHH
Confidence 4578888876 4556788889999999999999876643 222111000 001223579999999997653
No 46
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=71.47 E-value=0.82 Score=24.84 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=20.7
Q ss_pred CCCCCcccccccCCCCchHHHHHHHHHH
Q 034929 1 MGYDGFNSCWTDGKRSYSSSPCCKLLIN 28 (78)
Q Consensus 1 ~~~~~~QTAWAl~~~~~~I~rGi~~Li~ 28 (78)
|||+-.+---||-...-.++||++||++
T Consensus 18 MGF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 18 MGYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp TTCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 7777777667765333368999999998
No 47
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=70.93 E-value=0.79 Score=26.32 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=20.2
Q ss_pred CCCCCcccccccC-CCCchHHHHHHHHHHhccc
Q 034929 1 MGYDGFNSCWTDG-KRSYSSSPCCKLLINSQLE 32 (78)
Q Consensus 1 ~~~~~~QTAWAl~-~~~~~I~rGi~~Li~~Q~~ 32 (78)
|||+-.+---||- .....+++|++||++.+.+
T Consensus 29 MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d 61 (64)
T 2cpw_A 29 MGFPRARAQKALASTGGRSVQTACDWLFSHSGP 61 (64)
T ss_dssp HTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSC
T ss_pred cCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Confidence 4555544444543 2224799999999986643
No 48
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=70.16 E-value=1.3 Score=38.39 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=20.9
Q ss_pred CCchHHHHHHHHH-HhcccCCCCCCc
Q 034929 15 RSYSSSPCCKLLI-NSQLEDGDFPQQ 39 (78)
Q Consensus 15 ~~~~I~rGi~~Li-~~Q~~dG~W~q~ 39 (78)
+...|.+|++||. ++|.+||.|.+.
T Consensus 1095 ~~~~l~~a~~~L~~~~q~~~g~f~~~ 1120 (1661)
T 2b39_A 1095 DSKDLCETVKWLILEKQKPDGIFQED 1120 (1661)
T ss_dssp CHHHHHHHHHHHHHHTBCTTSCBCCC
T ss_pred CHHHHHHHHHHhhHhhCCCCCccccc
Confidence 4567999999999 599999999643
No 49
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=69.70 E-value=0.58 Score=28.66 Aligned_cols=31 Identities=13% Similarity=-0.031 Sum_probs=22.3
Q ss_pred CCCCCcccccccCCCCchHHHHHHHHHHhcc
Q 034929 1 MGYDGFNSCWTDGKRSYSSSPCCKLLINSQL 31 (78)
Q Consensus 1 ~~~~~~QTAWAl~~~~~~I~rGi~~Li~~Q~ 31 (78)
||||..+--.||-...-.++||++||++.+.
T Consensus 39 MGF~~~~A~~AL~~t~gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 39 MGFDTVVAEAALRVFGGNVQLAAQTLAHHGG 69 (83)
T ss_dssp HSCCHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 6777777777775222249999999999765
No 50
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=69.67 E-value=0.63 Score=27.45 Aligned_cols=32 Identities=6% Similarity=-0.069 Sum_probs=21.0
Q ss_pred CCCCCcccccccCCCCchHHHHHHHHHHhccc
Q 034929 1 MGYDGFNSCWTDGKRSYSSSPCCKLLINSQLE 32 (78)
Q Consensus 1 ~~~~~~QTAWAl~~~~~~I~rGi~~Li~~Q~~ 32 (78)
|||+-.+---||-...-.++|+++||++.+.+
T Consensus 39 MGF~~~~a~~AL~~t~~nve~Ave~L~~~~~d 70 (73)
T 1wiv_A 39 FGFAEDVARKALKASGGDIEKATDWVFNNSGP 70 (73)
T ss_dssp HTCCHHHHHHHHHHTTSCHHHHHHHHHHSCCS
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 56665555555542222699999999997643
No 51
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=68.98 E-value=1.4 Score=38.13 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.2
Q ss_pred CCchHHHHHHHHHH-hcccCCCCCCc
Q 034929 15 RSYSSSPCCKLLIN-SQLEDGDFPQQ 39 (78)
Q Consensus 15 ~~~~I~rGi~~Li~-~Q~~dG~W~q~ 39 (78)
+...+.++++||.+ +|.+||.|.+.
T Consensus 1096 ~~~~l~~a~~~L~~~~q~~~g~f~~~ 1121 (1676)
T 3cu7_A 1096 NQNSICNSLLWLVENYQLDNGSFKEN 1121 (1676)
T ss_dssp CHHHHHHHHHHHHHHSBCTTSCBCCC
T ss_pred CHHHHHHHHHHHHHhhCCCCCcccCC
Confidence 45679999999998 99999999643
No 52
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=66.33 E-value=0.92 Score=26.00 Aligned_cols=32 Identities=9% Similarity=0.060 Sum_probs=21.0
Q ss_pred CCCCCcccccccC-CCCchHHHHHHHHHHhccc
Q 034929 1 MGYDGFNSCWTDG-KRSYSSSPCCKLLINSQLE 32 (78)
Q Consensus 1 ~~~~~~QTAWAl~-~~~~~I~rGi~~Li~~Q~~ 32 (78)
|||+-.+---||- ...-.+++|++||++.+.+
T Consensus 19 MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d 51 (64)
T 1whc_A 19 MGFPRGRAEKALALTGNQGIEAAMDWLMEHEDD 51 (64)
T ss_dssp TTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCC
Confidence 5666555555554 2134699999999997654
No 53
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=65.83 E-value=1.2 Score=25.62 Aligned_cols=32 Identities=9% Similarity=0.041 Sum_probs=21.4
Q ss_pred CCCCCcccccccC-CCCchHHHHHHHHHHhccc
Q 034929 1 MGYDGFNSCWTDG-KRSYSSSPCCKLLINSQLE 32 (78)
Q Consensus 1 ~~~~~~QTAWAl~-~~~~~I~rGi~~Li~~Q~~ 32 (78)
|||+-.+-.-||- .....+++|++||++.+.+
T Consensus 19 MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d 51 (64)
T 2crn_A 19 MGFPVHTALKALAATGRKTAEEALAWLHDHCND 51 (64)
T ss_dssp TSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSS
T ss_pred cCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 5665555555554 2234799999999997753
No 54
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.24 E-value=0.7 Score=26.24 Aligned_cols=32 Identities=9% Similarity=0.037 Sum_probs=20.1
Q ss_pred CCCCCcccccccCCCCchHHHHHHHHHHhccc
Q 034929 1 MGYDGFNSCWTDGKRSYSSSPCCKLLINSQLE 32 (78)
Q Consensus 1 ~~~~~~QTAWAl~~~~~~I~rGi~~Li~~Q~~ 32 (78)
|||+-.+---||-...-.++++++||++.+.+
T Consensus 19 MGF~~~~a~~AL~~t~~nve~A~e~L~~~~~d 50 (63)
T 2dak_A 19 MGFSRDQALKALRATNNSLERAVDWIFSHIDD 50 (63)
T ss_dssp HTCCHHHHHHHHHHTTSCSHHHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 56655444445531112499999999997654
No 55
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=65.08 E-value=0.66 Score=24.22 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=18.7
Q ss_pred CCCCCcccccccCCCCchHHHHHHHHHH
Q 034929 1 MGYDGFNSCWTDGKRSYSSSPCCKLLIN 28 (78)
Q Consensus 1 ~~~~~~QTAWAl~~~~~~I~rGi~~Li~ 28 (78)
|||+..+---||....-.++++++||++
T Consensus 14 MGF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 14 MGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp TTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 6776655555654222368999999986
No 56
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.82 E-value=1.1 Score=27.07 Aligned_cols=32 Identities=16% Similarity=0.128 Sum_probs=21.2
Q ss_pred CCCCCcccccccCCCCchHHHHHHHHHHhccc
Q 034929 1 MGYDGFNSCWTDGKRSYSSSPCCKLLINSQLE 32 (78)
Q Consensus 1 ~~~~~~QTAWAl~~~~~~I~rGi~~Li~~Q~~ 32 (78)
|||+-.+---||-...-.+++|++||++.+.+
T Consensus 39 MGF~~~~a~~AL~~t~~nve~A~ewL~~~~~d 70 (83)
T 2dai_A 39 MGFPENRATKALQLNHMSVPQAMEWLIEHAED 70 (83)
T ss_dssp HTCCHHHHHHHHHHTTSCHHHHHHHHHHGGGC
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 56555555555542234699999999997654
No 57
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=64.05 E-value=0.48 Score=27.94 Aligned_cols=32 Identities=16% Similarity=0.026 Sum_probs=19.6
Q ss_pred CCCCCcccccccCCCCchHHHHHHHHHHhccc
Q 034929 1 MGYDGFNSCWTDGKRSYSSSPCCKLLINSQLE 32 (78)
Q Consensus 1 ~~~~~~QTAWAl~~~~~~I~rGi~~Li~~Q~~ 32 (78)
|||.--|--=||-+..-.|+|+++||.++..+
T Consensus 29 MGFs~~qA~kALKat~~NvErAaDWLFSH~D~ 60 (63)
T 1wgn_A 29 MGYSYECVLRAMKKKGENIEQILDYLFAHSGP 60 (63)
T ss_dssp HHCCHHHHHHHHHHHCSCHHHHHHHHHHHSCC
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 34443343334333345699999999997655
No 58
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.13 E-value=1.1 Score=26.37 Aligned_cols=32 Identities=6% Similarity=-0.022 Sum_probs=20.5
Q ss_pred CCCCCcccccccC-CCCchHHHHHHHHHHhccc
Q 034929 1 MGYDGFNSCWTDG-KRSYSSSPCCKLLINSQLE 32 (78)
Q Consensus 1 ~~~~~~QTAWAl~-~~~~~I~rGi~~Li~~Q~~ 32 (78)
|||+-.+---||- .....+++|++||++.+.+
T Consensus 19 MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d 51 (74)
T 2dag_A 19 MGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDD 51 (74)
T ss_dssp HSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTS
T ss_pred cCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 4555544445553 2223599999999997754
No 59
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=62.61 E-value=4.5 Score=23.71 Aligned_cols=18 Identities=22% Similarity=0.019 Sum_probs=14.9
Q ss_pred chHHHHHHHHHHhcccCC
Q 034929 17 YSSSPCCKLLINSQLEDG 34 (78)
Q Consensus 17 ~~I~rGi~~Li~~Q~~dG 34 (78)
=.|+|+|+||++.+.++|
T Consensus 46 Gnve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 46 GDTNAAIYKLKSSQGFSG 63 (67)
T ss_dssp SCHHHHHHHHHHCCSSSC
T ss_pred CCHHHHHHHHHhCCCccC
Confidence 369999999999877665
No 60
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=61.01 E-value=3.2 Score=31.80 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=20.9
Q ss_pred CchHHHHH----HHHHHhcccCCCCCCcceec
Q 034929 16 SYSSSPCC----KLLINSQLEDGDFPQQELTG 43 (78)
Q Consensus 16 ~~~I~rGi----~~Li~~Q~~dG~W~q~~~tG 43 (78)
.+.|++++ ++|++.|++||.|...+.||
T Consensus 201 ~~~i~~al~~l~~~l~~~Q~~dG~FGN~~ST~ 232 (414)
T 2bb6_A 201 RNRINLALKRVQEKILKAQTPEGYFGNVYSTP 232 (414)
T ss_dssp HHHHHHHHHHHHHHHHHTBCTTSCBSSTTTHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCccchhhHH
Confidence 36799999 77778899999986554444
No 61
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=60.87 E-value=1.9 Score=26.04 Aligned_cols=32 Identities=9% Similarity=0.120 Sum_probs=21.0
Q ss_pred CCCCCcccccccC-CCCchHHHHHHHHHHhccc
Q 034929 1 MGYDGFNSCWTDG-KRSYSSSPCCKLLINSQLE 32 (78)
Q Consensus 1 ~~~~~~QTAWAl~-~~~~~I~rGi~~Li~~Q~~ 32 (78)
|||+-.+---||. ...-.+++|++||++.+.+
T Consensus 39 MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d 71 (84)
T 1vek_A 39 MGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDD 71 (84)
T ss_dssp HTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 5665555555554 2224799999999997643
No 62
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.04 E-value=0.64 Score=24.84 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=16.7
Q ss_pred CCCCCcccccccCCCCchHHHHHHHHHHh
Q 034929 1 MGYDGFNSCWTDGKRSYSSSPCCKLLINS 29 (78)
Q Consensus 1 ~~~~~~QTAWAl~~~~~~I~rGi~~Li~~ 29 (78)
|||+-.+---||-... .++++++||++.
T Consensus 19 MGF~~~~a~~AL~~~~-n~e~A~~~L~~h 46 (47)
T 2ekk_A 19 MGFTREHAMEALLNTS-TMEQATEYLLTH 46 (47)
T ss_dssp HHCCHHHHHHHHHHSC-SHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHcC-CHHHHHHHHHcC
Confidence 4444444444443222 699999999874
No 63
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=53.18 E-value=4 Score=25.70 Aligned_cols=32 Identities=13% Similarity=-0.013 Sum_probs=23.4
Q ss_pred CCCCCcccccccC-CCCchHHHHHHHHHHhccc
Q 034929 1 MGYDGFNSCWTDG-KRSYSSSPCCKLLINSQLE 32 (78)
Q Consensus 1 ~~~~~~QTAWAl~-~~~~~I~rGi~~Li~~Q~~ 32 (78)
|||.-..-.-||- .....++++++||++++.+
T Consensus 13 MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d 45 (126)
T 2lbc_A 13 MGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEE 45 (126)
T ss_dssp TSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGC
T ss_pred cCCCHHHHHHHHHHcCCCCHHHHHHHHHHhccc
Confidence 6777766677765 2234799999999997754
No 64
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=51.42 E-value=1.1 Score=24.56 Aligned_cols=28 Identities=11% Similarity=0.039 Sum_probs=16.9
Q ss_pred CCC-CCcccccccCCCCchHHHHHHHHHH
Q 034929 1 MGY-DGFNSCWTDGKRSYSSSPCCKLLIN 28 (78)
Q Consensus 1 ~~~-~~~QTAWAl~~~~~~I~rGi~~Li~ 28 (78)
||| |-.+---||-...=.+++||+||++
T Consensus 22 MGF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 22 MGFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp TTCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 566 5444445554212258899999976
No 65
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*
Probab=51.01 E-value=14 Score=29.09 Aligned_cols=32 Identities=13% Similarity=0.042 Sum_probs=24.0
Q ss_pred CCcccccccCC-CCchHHHHHHHHHHhcccCCC
Q 034929 4 DGFNSCWTDGK-RSYSSSPCCKLLINSQLEDGD 35 (78)
Q Consensus 4 ~~~QTAWAl~~-~~~~I~rGi~~Li~~Q~~dG~ 35 (78)
|..|++.|+.. +.+..++-++.+.+.|.+||+
T Consensus 350 D~~~~~~~l~~~~p~~ar~~l~~~~~~Q~~~G~ 382 (807)
T 1v7w_A 350 DTAQDAISVPHANPEMTRKRIVDLLRGQVKAGY 382 (807)
T ss_dssp HHHHHTTSCTTTCHHHHHHHHHHHHHTBCTTSC
T ss_pred HHhHHHHHHhhcCHHHHHHHHHHHHhccccCCC
Confidence 55677777663 345677778888999999997
No 66
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=50.93 E-value=2 Score=29.75 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHhcccCCCCCCcc
Q 034929 18 SSSPCCKLLINSQLEDGDFPQQE 40 (78)
Q Consensus 18 ~I~rGi~~Li~~Q~~dG~W~q~~ 40 (78)
.+..+-..|++.+++||+||++.
T Consensus 208 ~L~~~Q~illE~r~~dg~WP~~~ 230 (231)
T 3jyu_A 208 GLYQGQVLVIEPQNEDGTWPRQS 230 (231)
T ss_dssp TCCTTEEEEEEECCTTSCCCC--
T ss_pred CCCCCCEEEEEEecCCCCCCccc
Confidence 34455566788889999999863
No 67
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=50.20 E-value=9.5 Score=28.14 Aligned_cols=23 Identities=13% Similarity=0.364 Sum_probs=20.3
Q ss_pred chHHHHHHHHHHhcccCCCCCCc
Q 034929 17 YSSSPCCKLLINSQLEDGDFPQQ 39 (78)
Q Consensus 17 ~~I~rGi~~Li~~Q~~dG~W~q~ 39 (78)
+.|+++++++++.+.++|.||..
T Consensus 254 ~~i~~~l~~l~~~~~~~g~wp~~ 276 (411)
T 3e6u_A 254 SLVKPSVDYVCQLKFPSGNYPPC 276 (411)
T ss_dssp HTHHHHHHHHHHTCCTTSCCCSB
T ss_pred HHHHHHHHHHHHhhccCCCCCCC
Confidence 57999999999999999999863
No 68
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=50.06 E-value=4.7 Score=30.77 Aligned_cols=27 Identities=11% Similarity=-0.023 Sum_probs=21.4
Q ss_pred chHHHHHHHHHHhcccCCCCCCcceec
Q 034929 17 YSSSPCCKLLINSQLEDGDFPQQELTG 43 (78)
Q Consensus 17 ~~I~rGi~~Li~~Q~~dG~W~q~~~tG 43 (78)
.+|++.++.|++.|++||.|...+.||
T Consensus 183 ~ai~~~~~~l~~~q~~dG~fGn~yST~ 209 (399)
T 2pmv_A 183 QVLKDIVEKISMKIKDNGIIGDIYSTG 209 (399)
T ss_dssp HHHHHHHHHHTTSBCTTSCBSSHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCcccccccHH
Confidence 467888888888899999997665555
No 69
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=47.30 E-value=2.8 Score=25.38 Aligned_cols=32 Identities=9% Similarity=0.120 Sum_probs=19.5
Q ss_pred CCCCCcccccccCCCCchHHHHHHHHHHhccc
Q 034929 1 MGYDGFNSCWTDGKRSYSSSPCCKLLINSQLE 32 (78)
Q Consensus 1 ~~~~~~QTAWAl~~~~~~I~rGi~~Li~~Q~~ 32 (78)
|||+-.+---||-...-.+++|++||++...+
T Consensus 31 MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 31 MGFPREPAEEALKSNNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HTCCHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence 45554444444432223599999999986643
No 70
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=45.79 E-value=2.7 Score=28.84 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=12.1
Q ss_pred HHHHHHHhcccCCCCCCc
Q 034929 22 CCKLLINSQLEDGDFPQQ 39 (78)
Q Consensus 22 Gi~~Li~~Q~~dG~W~q~ 39 (78)
+-..||+.+++||+||++
T Consensus 200 ~Q~illE~r~~dg~WP~~ 217 (217)
T 4a3p_A 200 GQVLVIEQKNEDGTWPRG 217 (217)
T ss_dssp TCEEEEEECCCC-CCCC-
T ss_pred CCEEEEEEecCCCCCCCC
Confidence 444567778899999874
No 71
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=43.00 E-value=8 Score=29.60 Aligned_cols=33 Identities=9% Similarity=0.017 Sum_probs=24.7
Q ss_pred CCcccccccC-----C--CC---chHHHHHHHHHHhcccCCCCC
Q 034929 4 DGFNSCWTDG-----K--RS---YSSSPCCKLLINSQLEDGDFP 37 (78)
Q Consensus 4 ~~~QTAWAl~-----~--~~---~~I~rGi~~Li~~Q~~dG~W~ 37 (78)
+...|++|+- . .. -...+++++|++ |.+||.|.
T Consensus 227 N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~ 269 (414)
T 2bb6_A 227 NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ 269 (414)
T ss_dssp STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC
T ss_pred chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC
Confidence 4467899972 1 11 257789999998 99999995
No 72
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=39.65 E-value=8.8 Score=24.67 Aligned_cols=25 Identities=12% Similarity=-0.017 Sum_probs=19.7
Q ss_pred cccccC--CCCchHHHHHHHHHHhccc
Q 034929 8 SCWTDG--KRSYSSSPCCKLLINSQLE 32 (78)
Q Consensus 8 TAWAl~--~~~~~I~rGi~~Li~~Q~~ 32 (78)
=||||- .....|+|||..|-+.-..
T Consensus 41 yAw~Lv~S~~~~d~~~GI~lLe~l~~~ 67 (126)
T 1nzn_A 41 YAWCLVRTRYNDDIRKGIVLLEELLPK 67 (126)
T ss_dssp HHHHHTTSSSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 389987 4567899999999986554
No 73
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=37.38 E-value=43 Score=23.52 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=33.3
Q ss_pred chHHHHHHHHHHh-cccCCCCCCcc-eeceeccceeccCCCchhhHhHHHHHHHHHH
Q 034929 17 YSSSPCCKLLINS-QLEDGDFPQQE-LTGAFMGNCMLHYPTYRNIFPMWALAEYRSK 71 (78)
Q Consensus 17 ~~I~rGi~~Li~~-Q~~dG~W~q~~-~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y~~~ 71 (78)
+.++++++||++. +.++|.|--.. ..|.... -.-..|-+.|-++||+++.+.
T Consensus 77 ~~A~~~~~~l~~~~~~~~Gg~~~~~d~dg~~~~---~~~~~~~~af~i~al~~~y~~ 130 (388)
T 2gz6_A 77 KIARNGAKFLAQHGRDDEGNWYFALTRGGEPLV---QPYNIFSDCFAAMAFSQYALA 130 (388)
T ss_dssp HHHHHHHHHHHHHSBCTTSCBCSEECTTSCBCC---CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEcCCCCccc---CCcchHHHHHHHHHHHHHHHH
Confidence 5689999999987 55567664221 2332111 134557899999999986543
No 74
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=35.44 E-value=3.9 Score=20.43 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=12.6
Q ss_pred CCCCCcccccccCCCCchHHHHHHHH
Q 034929 1 MGYDGFNSCWTDGKRSYSSSPCCKLL 26 (78)
Q Consensus 1 ~~~~~~QTAWAl~~~~~~I~rGi~~L 26 (78)
||++..+---||....-.+++++.||
T Consensus 14 mGf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 14 MGFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp TTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 45544333334432222567777776
No 75
>2b4n_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Homo sapiens} PDB: 2l70_A 2l71_A 2obu_A 2qkh_B*
Probab=35.16 E-value=26 Score=18.85 Aligned_cols=21 Identities=10% Similarity=0.188 Sum_probs=16.4
Q ss_pred chHHHHHHHHHHhcccCCCCC
Q 034929 17 YSSSPCCKLLINSQLEDGDFP 37 (78)
Q Consensus 17 ~~I~rGi~~Li~~Q~~dG~W~ 37 (78)
.+.+.=|+|||+.+....+|.
T Consensus 17 ~~akdFv~WL~~~k~~~~d~~ 37 (42)
T 2b4n_A 17 IHQQDFVNWLLAQKGKKNDWK 37 (42)
T ss_dssp HHHHHHHHHHHHTTCCCCCTT
T ss_pred HHHHHHHHHHHhCCCcCcchh
Confidence 356677999999888877773
No 76
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=35.09 E-value=7.7 Score=25.46 Aligned_cols=24 Identities=17% Similarity=0.118 Sum_probs=18.9
Q ss_pred ccccC--CCCchHHHHHHHHHHhccc
Q 034929 9 CWTDG--KRSYSSSPCCKLLINSQLE 32 (78)
Q Consensus 9 AWAl~--~~~~~I~rGi~~Li~~Q~~ 32 (78)
||||. .....+++||..|-+.-..
T Consensus 47 Aw~Lv~S~~~~d~~~GI~LLe~l~~~ 72 (134)
T 3o48_A 47 AWGLIKSTDVNDERLGVKILTDIYKE 72 (134)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 89997 5667899999999765543
No 77
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=31.95 E-value=8.5 Score=24.44 Aligned_cols=14 Identities=7% Similarity=0.024 Sum_probs=11.3
Q ss_pred chHHHHHHHHHHhc
Q 034929 17 YSSSPCCKLLINSQ 30 (78)
Q Consensus 17 ~~I~rGi~~Li~~Q 30 (78)
=.++|+++||+++-
T Consensus 102 nd~erAlewL~~~~ 115 (118)
T 4ae4_A 102 NDQDNALEDLMARA 115 (118)
T ss_dssp TCHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHhc
Confidence 36899999999853
No 78
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=31.45 E-value=29 Score=18.92 Aligned_cols=14 Identities=14% Similarity=0.007 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHhcc
Q 034929 18 SSSPCCKLLINSQL 31 (78)
Q Consensus 18 ~I~rGi~~Li~~Q~ 31 (78)
.|+|||+||++...
T Consensus 37 dv~~Ave~L~~~~~ 50 (54)
T 2dah_A 37 DVDAAVEKLRQSSG 50 (54)
T ss_dssp CHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHhCCC
Confidence 58999999998653
No 79
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=29.91 E-value=50 Score=23.82 Aligned_cols=51 Identities=10% Similarity=-0.069 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHhcc-cC-CCCCCcceeceeccceeccCCCchhhHhHHHHHHHHH
Q 034929 17 YSSSPCCKLLINSQL-ED-GDFPQQELTGAFMGNCMLHYPTYRNIFPMWALAEYRS 70 (78)
Q Consensus 17 ~~I~rGi~~Li~~Q~-~d-G~W~q~~~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y~~ 70 (78)
+.+++|++||.+.-. ++ |.|--....|.= .-..-..|.+.|-++||+.|..
T Consensus 75 ~~A~~~~~fl~~~~~d~~~Gg~~~~~~dG~~---~~~~~~lyd~Af~i~al~~~~~ 127 (402)
T 3gt5_A 75 DAVHHGLSYVRDVHRNPATGGYAWTLCDDRV---EDDTNHCYGLAFVMLAYSCGLK 127 (402)
T ss_dssp HHHHHHHHHHHHTTBCTTTSCBCSEEETTEE---EECCEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCCCCcEEEEeeCCCC---CcCCcchHHHHHHHHHHHHHHH
Confidence 567899999998533 33 666433222320 1134567889999999999764
No 80
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.70 E-value=27 Score=20.55 Aligned_cols=15 Identities=7% Similarity=0.131 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHhccc
Q 034929 18 SSSPCCKLLINSQLE 32 (78)
Q Consensus 18 ~I~rGi~~Li~~Q~~ 32 (78)
.|+|+|+||++.+-+
T Consensus 57 nve~Ave~L~~~~~~ 71 (74)
T 1vej_A 57 DIHAAIEMLLGASGP 71 (74)
T ss_dssp CHHHHHHHHHTCCCC
T ss_pred CHHHHHHHHHhCCCC
Confidence 589999999986544
No 81
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=26.02 E-value=15 Score=24.27 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=20.2
Q ss_pred ccccccC--CCCchHHHHHHHHHHhccc
Q 034929 7 NSCWTDG--KRSYSSSPCCKLLINSQLE 32 (78)
Q Consensus 7 QTAWAl~--~~~~~I~rGi~~Li~~Q~~ 32 (78)
+=||+|. .....+++||..|-+.-..
T Consensus 44 ~YAw~Lv~S~~~~di~~GI~LLe~l~~~ 71 (144)
T 1y8m_A 44 NYAWGLIKSTDVNDERLGVKILTDIYKE 71 (144)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 3489986 5667899999999876553
No 82
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=24.75 E-value=1.1e+02 Score=22.24 Aligned_cols=55 Identities=16% Similarity=0.220 Sum_probs=37.4
Q ss_pred chHHHHHHHHHHhcccCCCCCCcceeceec---cceecc----CCCchhhHhHHHHHHHHHHh
Q 034929 17 YSSSPCCKLLINSQLEDGDFPQQELTGAFM---GNCMLH----YPTYRNIFPMWALAEYRSKF 72 (78)
Q Consensus 17 ~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~---~~~yi~----Y~~Yr~~fPl~ALg~Y~~~~ 72 (78)
+.++|+.+-|++.-.+||.- ..--.|+-. ..+|++ -..|-+..-|+|+.++.+.+
T Consensus 320 ~~a~ka~~~l~~~i~~dG~l-~~v~~gt~~g~~~~~Y~~~p~~~~~~G~~~~lla~~e~~~~~ 381 (382)
T 3pmm_A 320 GVAEKAIRGIVQNISPQGEL-LQTSFGTGMGSDLDFYRQIPLTSMPYGQAMAILCLTEYLRKY 381 (382)
T ss_dssp HHHHHHHHHHHHTBCTTSCB-CSCBCCCCCCSSHHHHHTCCBCCCHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhhCCCCCCE-eCeecCCCCCCChhhhhcccCCCCCccHHHHHHHHHHHHHhh
Confidence 57899999999998899965 332234411 222322 24577888999999988764
No 83
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=24.75 E-value=39 Score=25.20 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=34.2
Q ss_pred CCCchHHHHHHHHHHhcccCCCCCCcceeceeccceeccCCCchhhHhHHHHHHH
Q 034929 14 KRSYSSSPCCKLLINSQLEDGDFPQQELTGAFMGNCMLHYPTYRNIFPMWALAEY 68 (78)
Q Consensus 14 ~~~~~I~rGi~~Li~~Q~~dG~W~q~~~tG~f~~~~yi~Y~~Yr~~fPl~ALg~Y 68 (78)
.+.+-.+.+++-|.+-|..|+..+ +-|.|-..---.-|+|.|..||.|...|
T Consensus 297 ~D~~la~~~~~rm~~fq~~d~~s~---yyGG~~~~~~~~~~sfdNL~~LlA~~~~ 348 (350)
T 3ren_A 297 GDKELFNKAIDKLKYYQIKNKDSV---LYGGFGDEKTNSVYSFDNLNALLAFQKY 348 (350)
T ss_dssp TCHHHHHHHHHHHHHHSCCCTTST---TTTSCSBTTTTBCBHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhcccCCCCcc---cCCcccccCCCceeeeccHHHHHHHHhh
Confidence 345567778888888888888653 2233211111245789999999998765
No 84
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=23.82 E-value=33 Score=18.04 Aligned_cols=11 Identities=27% Similarity=0.238 Sum_probs=9.5
Q ss_pred hHHHHHHHHHH
Q 034929 18 SSSPCCKLLIN 28 (78)
Q Consensus 18 ~I~rGi~~Li~ 28 (78)
.++|||+||++
T Consensus 35 nv~~Ave~L~~ 45 (46)
T 2bwb_A 35 SVQGALDSLLN 45 (46)
T ss_dssp CHHHHHHHHHC
T ss_pred CHHHHHHHHHc
Confidence 58899999985
No 85
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=23.74 E-value=16 Score=19.36 Aligned_cols=29 Identities=7% Similarity=0.024 Sum_probs=18.3
Q ss_pred CCCCCcccccccCCCCchHHHHHHHHHHh
Q 034929 1 MGYDGFNSCWTDGKRSYSSSPCCKLLINS 29 (78)
Q Consensus 1 ~~~~~~QTAWAl~~~~~~I~rGi~~Li~~ 29 (78)
||++..+--=||..-.-.+++++.||++.
T Consensus 14 mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~ 42 (47)
T 1dv0_A 14 LGFPESLVIQAYFACEKNENLAANFLLSQ 42 (47)
T ss_dssp TTCCHHHHHHHHTTTTSCHHHHHHHTTSC
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 45555444345543445788999999874
No 86
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.80 E-value=55 Score=20.56 Aligned_cols=21 Identities=5% Similarity=0.191 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHhcccCCCCCC
Q 034929 18 SSSPCCKLLINSQLEDGDFPQ 38 (78)
Q Consensus 18 ~I~rGi~~Li~~Q~~dG~W~q 38 (78)
.+.+||.+|++.....|+|..
T Consensus 67 Dl~~AI~~Lleg~~~~~~W~~ 87 (104)
T 1wj7_A 67 DVNRAINVLLEGNPDTHSWEM 87 (104)
T ss_dssp CHHHHHHHHHTCSSSCSSCSS
T ss_pred CHHHHHHHHHhCCCcCCceee
Confidence 588999999987665689953
No 87
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=21.52 E-value=48 Score=18.41 Aligned_cols=12 Identities=25% Similarity=0.229 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHh
Q 034929 18 SSSPCCKLLINS 29 (78)
Q Consensus 18 ~I~rGi~~Li~~ 29 (78)
.|+|||+||++.
T Consensus 45 nve~Ave~L~~~ 56 (58)
T 1wr1_B 45 SVQGALDSLLNG 56 (58)
T ss_dssp CHHHHHHHHHHT
T ss_pred CHHHHHHHHHhC
Confidence 589999999973
No 88
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=21.45 E-value=52 Score=23.62 Aligned_cols=20 Identities=20% Similarity=0.041 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhccc-CCCCCC
Q 034929 19 SSPCCKLLINSQLE-DGDFPQ 38 (78)
Q Consensus 19 I~rGi~~Li~~Q~~-dG~W~q 38 (78)
.++-++.|++.|.+ ||-|.+
T Consensus 243 ~~~~a~~l~~~q~~~dG~W~~ 263 (373)
T 1nc5_A 243 LQDMIKSICRYQDKETGLWYQ 263 (373)
T ss_dssp HHHHHHHHHTTSCTTTSCCBS
T ss_pred HHHHHHHHHHhcCCCCCceee
Confidence 56678999999986 999974
No 89
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.34 E-value=30 Score=19.32 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=14.8
Q ss_pred CCCchHHHHHHHHHHhcccC
Q 034929 14 KRSYSSSPCCKLLINSQLED 33 (78)
Q Consensus 14 ~~~~~I~rGi~~Li~~Q~~d 33 (78)
...-.|.++|..|++....|
T Consensus 33 ~~~gnv~~aI~~Ll~~~~~~ 52 (54)
T 2cp8_A 33 KHNYNILQVVTELLQLSGPS 52 (54)
T ss_dssp TTTTCHHHHHHHHHHHSSSC
T ss_pred HcCCCHHHHHHHHHhccCCC
Confidence 34557999999999866543
Done!