Query 034934
Match_columns 78
No_of_seqs 102 out of 574
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:48:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034934.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034934hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02487 zeta-carotene desatur 99.8 7.1E-19 1.5E-23 132.9 8.8 73 1-73 460-532 (569)
2 TIGR02732 zeta_caro_desat caro 99.8 1.1E-18 2.3E-23 128.8 8.7 73 1-73 384-456 (474)
3 PLN02612 phytoene desaturase 99.3 3.5E-12 7.6E-17 96.3 8.0 70 2-71 451-525 (567)
4 TIGR02731 phytoene_desat phyto 99.3 2E-11 4.3E-16 88.8 7.7 73 2-74 360-436 (453)
5 TIGR03467 HpnE squalene-associ 99.1 4.2E-10 9.1E-15 79.8 7.4 73 2-74 329-401 (419)
6 PRK07233 hypothetical protein; 99.0 1.7E-09 3.6E-14 77.3 7.3 70 2-71 339-408 (434)
7 COG3349 Uncharacterized conser 99.0 6.2E-10 1.4E-14 83.4 4.5 69 2-71 372-440 (485)
8 TIGR00562 proto_IX_ox protopor 98.1 2.6E-06 5.7E-11 61.9 3.7 67 2-70 369-439 (462)
9 PF01593 Amino_oxidase: Flavin 98.0 1.5E-06 3.3E-11 60.3 1.1 70 2-71 353-430 (450)
10 PLN02576 protoporphyrinogen ox 98.0 3.9E-06 8.4E-11 61.7 2.2 70 2-71 393-467 (496)
11 PRK11883 protoporphyrinogen ox 98.0 1.2E-05 2.5E-10 58.0 4.5 65 2-69 362-430 (451)
12 PRK07208 hypothetical protein; 97.9 5.4E-06 1.2E-10 60.7 2.1 67 2-69 368-437 (479)
13 TIGR02733 desat_CrtD C-3',4' d 97.9 5.8E-05 1.3E-09 55.7 7.1 66 5-71 393-471 (492)
14 TIGR02730 carot_isom carotene 97.7 9.3E-05 2E-09 54.9 5.8 66 5-71 393-471 (493)
15 TIGR02734 crtI_fam phytoene de 97.6 0.00018 3.9E-09 53.2 6.3 66 5-71 391-471 (502)
16 PRK12416 protoporphyrinogen ox 97.6 8.6E-05 1.9E-09 54.3 3.7 68 2-71 370-441 (463)
17 PLN02268 probable polyamine ox 97.2 0.00044 9.6E-09 50.1 4.2 70 2-73 337-413 (435)
18 KOG4254 Phytoene desaturase [C 97.0 0.0032 6.9E-08 48.0 6.7 68 4-72 443-528 (561)
19 COG1232 HemY Protoporphyrinoge 96.4 0.0017 3.6E-08 48.7 1.5 67 2-70 355-425 (444)
20 COG1233 Phytoene dehydrogenase 95.9 0.035 7.5E-07 41.6 6.4 65 6-72 385-463 (487)
21 PLN02529 lysine-specific histo 95.2 0.086 1.9E-06 41.9 6.7 72 2-73 496-577 (738)
22 KOG0029 Amine oxidase [Seconda 94.6 0.094 2E-06 39.9 5.3 73 2-74 359-439 (501)
23 PLN02976 amine oxidase 94.5 0.083 1.8E-06 45.3 5.2 72 2-73 1086-1165(1713)
24 PLN02676 polyamine oxidase 94.2 0.11 2.4E-06 39.1 4.9 69 2-71 375-450 (487)
25 PLN03000 amine oxidase 94.1 0.25 5.5E-06 40.2 7.0 72 2-73 520-602 (881)
26 PLN02328 lysine-specific histo 93.9 0.31 6.7E-06 39.3 7.0 71 2-72 576-657 (808)
27 PF01134 GIDA: Glucose inhibit 92.0 0.31 6.7E-06 36.3 4.4 57 11-72 312-369 (392)
28 PRK05335 tRNA (uracil-5-)-meth 90.4 0.39 8.5E-06 36.2 3.6 57 12-72 287-344 (436)
29 PLN02568 polyamine oxidase 90.2 0.61 1.3E-05 35.7 4.6 21 2-22 402-422 (539)
30 TIGR00137 gid_trmFO tRNA:m(5)U 88.7 0.47 1E-05 35.7 3.0 58 11-72 285-343 (433)
31 COG3380 Predicted NAD/FAD-depe 87.2 0.9 1.9E-05 33.0 3.5 66 1-70 245-310 (331)
32 COG1231 Monoamine oxidase [Ami 75.5 11 0.00025 28.7 5.8 67 2-68 348-422 (450)
33 TIGR00136 gidA glucose-inhibit 75.4 4.4 9.5E-05 32.0 3.7 58 10-72 313-371 (617)
34 COG0492 TrxB Thioredoxin reduc 73.1 2.4 5.2E-05 30.3 1.7 23 51-73 258-280 (305)
35 KOG1276 Protoporphyrinogen oxi 71.5 2.7 5.9E-05 32.2 1.7 67 2-70 401-472 (491)
36 PF07992 Pyr_redox_2: Pyridine 71.4 3.4 7.4E-05 26.2 2.0 20 51-70 180-199 (201)
37 PRK05192 tRNA uridine 5-carbox 70.1 5.6 0.00012 31.4 3.2 57 11-72 316-373 (618)
38 KOG0404 Thioredoxin reductase 69.7 2.4 5.2E-05 30.3 1.0 21 49-69 273-294 (322)
39 COG1206 Gid NAD(FAD)-utilizing 69.0 2.8 6.1E-05 31.4 1.3 53 13-69 292-345 (439)
40 KOG0685 Flavin-containing amin 65.8 16 0.00035 28.3 4.8 71 2-72 384-469 (498)
41 PF08845 SymE_toxin: Toxin Sym 65.3 4.3 9.4E-05 22.3 1.3 19 54-72 19-37 (57)
42 COG3634 AhpF Alkyl hydroperoxi 62.8 4.8 0.0001 30.6 1.5 17 54-70 475-491 (520)
43 TIGR03765 ICE_PFL_4695 integra 62.8 9.2 0.0002 23.7 2.5 27 40-66 6-32 (105)
44 PRK10262 thioredoxin reductase 62.0 4.8 0.0001 28.0 1.3 17 54-70 275-291 (321)
45 PLN02852 ferredoxin-NADP+ redu 60.1 7.5 0.00016 29.7 2.2 18 55-74 383-400 (491)
46 TIGR01292 TRX_reduct thioredox 58.1 7.6 0.00016 26.1 1.8 16 54-69 261-276 (300)
47 PF11072 DUF2859: Protein of u 56.3 12 0.00027 24.2 2.4 28 39-66 43-70 (142)
48 PRK15317 alkyl hydroperoxide r 53.3 9.3 0.0002 28.8 1.7 19 52-70 470-488 (517)
49 TIGR00551 nadB L-aspartate oxi 50.8 10 0.00023 28.3 1.6 18 52-69 340-357 (488)
50 PRK04965 NADH:flavorubredoxin 49.5 12 0.00026 26.7 1.7 17 54-70 261-277 (377)
51 PF01266 DAO: FAD dependent ox 49.4 8.4 0.00018 26.2 0.9 50 9-66 288-339 (358)
52 COG2081 Predicted flavoprotein 48.4 5.4 0.00012 30.1 -0.2 22 57-78 367-391 (408)
53 PRK08071 L-aspartate oxidase; 48.1 11 0.00025 28.4 1.5 17 53-69 340-356 (510)
54 PRK08010 pyridine nucleotide-d 48.0 14 0.00031 27.0 1.9 18 53-70 279-296 (441)
55 PRK13605 endoribonuclease SymE 47.9 14 0.0003 23.2 1.6 20 53-72 32-51 (113)
56 PRK09231 fumarate reductase fl 47.7 11 0.00025 29.0 1.5 17 53-69 366-382 (582)
57 TIGR03140 AhpF alkyl hydropero 47.6 13 0.00029 28.0 1.8 18 53-70 472-489 (515)
58 PRK07804 L-aspartate oxidase; 47.6 12 0.00026 28.6 1.5 17 53-69 365-381 (541)
59 COG1249 Lpd Pyruvate/2-oxoglut 47.5 13 0.00027 28.2 1.6 17 2-18 210-226 (454)
60 PRK12769 putative oxidoreducta 47.5 9 0.00019 29.8 0.9 16 54-69 613-628 (654)
61 TIGR01424 gluta_reduc_2 glutat 47.4 14 0.00029 27.3 1.8 17 53-69 288-304 (446)
62 PLN02507 glutathione reductase 47.3 15 0.00032 27.8 1.9 18 52-69 324-341 (499)
63 PRK07846 mycothione reductase; 47.2 13 0.00029 27.5 1.7 17 54-70 288-304 (451)
64 PRK12831 putative oxidoreducta 47.1 12 0.00027 27.9 1.6 16 54-69 422-437 (464)
65 TIGR01316 gltA glutamate synth 46.7 15 0.00033 27.2 1.9 16 54-69 411-426 (449)
66 PRK09754 phenylpropionate diox 46.7 14 0.00031 26.6 1.7 19 52-70 261-279 (396)
67 PRK09077 L-aspartate oxidase; 46.2 12 0.00026 28.4 1.4 18 52-69 360-377 (536)
68 PRK06116 glutathione reductase 46.0 13 0.00028 27.3 1.4 16 54-69 291-306 (450)
69 COG0445 GidA Flavin-dependent 45.2 38 0.00082 27.0 3.9 58 10-72 315-373 (621)
70 PRK08401 L-aspartate oxidase; 44.5 13 0.00028 27.7 1.3 16 53-68 318-333 (466)
71 TIGR01421 gluta_reduc_1 glutat 44.3 18 0.00038 26.8 2.0 16 54-69 291-306 (450)
72 COG2509 Uncharacterized FAD-de 44.0 41 0.0009 26.0 3.9 15 54-68 445-459 (486)
73 TIGR03452 mycothione_red mycot 43.9 15 0.00031 27.3 1.5 17 54-70 291-307 (452)
74 TIGR01317 GOGAT_sm_gam glutama 43.5 13 0.00028 28.0 1.2 16 54-69 440-455 (485)
75 TIGR01176 fum_red_Fp fumarate 43.4 13 0.00029 28.7 1.2 18 52-69 364-381 (580)
76 PRK13748 putative mercuric red 43.4 14 0.00031 27.8 1.4 17 54-70 391-407 (561)
77 PRK07512 L-aspartate oxidase; 43.2 13 0.00029 28.1 1.2 17 52-68 348-364 (513)
78 PRK08275 putative oxidoreducta 42.8 15 0.00033 28.0 1.5 16 53-68 364-379 (554)
79 PRK14727 putative mercuric red 42.7 16 0.00034 27.3 1.5 16 54-69 309-324 (479)
80 PRK06854 adenylylsulfate reduc 42.6 15 0.00034 28.4 1.5 19 52-70 389-407 (608)
81 PRK06175 L-aspartate oxidase; 42.6 16 0.00034 27.1 1.4 18 52-69 338-355 (433)
82 PRK13512 coenzyme A disulfide 42.2 15 0.00032 27.0 1.3 17 53-69 264-280 (438)
83 PRK06115 dihydrolipoamide dehy 42.0 15 0.00032 27.3 1.3 16 54-69 301-316 (466)
84 TIGR01812 sdhA_frdA_Gneg succi 41.6 13 0.00029 28.2 1.0 14 56-69 357-370 (566)
85 PRK05249 soluble pyridine nucl 41.4 15 0.00033 26.9 1.3 16 54-69 298-313 (461)
86 PRK07845 flavoprotein disulfid 41.1 18 0.0004 26.8 1.7 18 53-70 299-316 (466)
87 PRK06292 dihydrolipoamide dehy 41.1 19 0.0004 26.4 1.7 18 53-70 293-310 (460)
88 PRK13800 putative oxidoreducta 40.9 14 0.0003 30.0 1.1 18 52-69 368-385 (897)
89 PRK13984 putative oxidoreducta 40.9 18 0.00038 27.8 1.6 16 54-69 564-579 (604)
90 PRK09564 coenzyme A disulfide 40.6 19 0.00041 26.2 1.6 18 53-70 269-286 (444)
91 PRK12770 putative glutamate sy 40.6 18 0.0004 25.6 1.5 16 54-69 311-326 (352)
92 PRK11749 dihydropyrimidine deh 40.6 18 0.00038 26.7 1.5 17 53-69 412-428 (457)
93 PRK12810 gltD glutamate syntha 40.5 18 0.0004 26.9 1.6 16 54-69 426-441 (471)
94 PF08776 VASP_tetra: VASP tetr 40.3 44 0.00096 17.2 2.5 12 6-17 25-36 (40)
95 PF11610 Ste5: Scaffold protei 40.2 21 0.00046 16.9 1.2 20 36-65 4-23 (30)
96 cd04495 BRCA2DBD_OB3 BRCA2DBD_ 40.2 16 0.00035 22.4 1.0 20 49-69 59-78 (100)
97 PRK06263 sdhA succinate dehydr 39.8 21 0.00046 27.1 1.9 16 53-68 356-371 (543)
98 TIGR02053 MerA mercuric reduct 39.8 18 0.00039 26.6 1.4 17 54-70 292-308 (463)
99 TIGR01373 soxB sarcosine oxida 39.3 94 0.002 22.2 5.0 54 5-66 308-362 (407)
100 TIGR01318 gltD_gamma_fam gluta 39.3 24 0.00053 26.3 2.1 16 54-69 427-442 (467)
101 PLN02815 L-aspartate oxidase 39.1 18 0.0004 28.1 1.4 18 52-69 384-401 (594)
102 TIGR02061 aprA adenosine phosp 38.5 17 0.00037 28.5 1.2 18 52-69 400-417 (614)
103 PRK05675 sdhA succinate dehydr 38.5 19 0.00041 27.7 1.4 14 56-69 360-373 (570)
104 TIGR01423 trypano_reduc trypan 38.1 23 0.0005 26.7 1.8 18 53-70 313-330 (486)
105 PRK09078 sdhA succinate dehydr 37.4 19 0.0004 27.9 1.2 15 55-69 382-396 (598)
106 PRK07803 sdhA succinate dehydr 37.3 17 0.00037 28.3 1.0 15 54-68 401-415 (626)
107 PRK08641 sdhA succinate dehydr 37.3 17 0.00036 28.1 1.0 16 53-68 363-378 (589)
108 TIGR01816 sdhA_forward succina 37.2 19 0.00042 27.6 1.3 15 55-69 350-364 (565)
109 PRK07818 dihydrolipoamide dehy 36.8 21 0.00046 26.4 1.4 16 54-69 299-314 (466)
110 PRK07395 L-aspartate oxidase; 36.6 20 0.00043 27.6 1.2 18 52-69 354-371 (553)
111 PRK14694 putative mercuric red 36.5 21 0.00046 26.4 1.4 17 54-70 298-314 (468)
112 TIGR02352 thiamin_ThiO glycine 36.4 1.2E+02 0.0025 20.7 5.0 54 5-66 258-313 (337)
113 PRK06416 dihydrolipoamide dehy 36.4 25 0.00054 25.8 1.7 16 54-69 297-312 (462)
114 TIGR01438 TGR thioredoxin and 36.2 21 0.00046 26.8 1.3 16 54-69 306-321 (484)
115 PRK06370 mercuric reductase; V 36.1 22 0.00048 26.2 1.4 17 53-69 296-312 (463)
116 PRK06467 dihydrolipoamide dehy 35.8 22 0.00048 26.5 1.4 16 54-69 300-315 (471)
117 PRK08958 sdhA succinate dehydr 35.6 20 0.00043 27.7 1.1 14 56-69 378-391 (588)
118 TIGR03143 AhpF_homolog putativ 35.6 21 0.00046 27.2 1.3 16 54-69 269-284 (555)
119 PLN02546 glutathione reductase 35.5 24 0.00052 27.3 1.6 17 53-69 375-391 (558)
120 PTZ00058 glutathione reductase 35.4 22 0.00048 27.5 1.3 17 53-69 360-376 (561)
121 PLN00128 Succinate dehydrogena 35.4 22 0.00048 27.9 1.4 14 56-69 421-434 (635)
122 PRK07117 acyl carrier protein; 35.3 45 0.00098 19.1 2.4 20 3-22 1-20 (79)
123 PRK08205 sdhA succinate dehydr 34.8 21 0.00045 27.5 1.1 14 56-69 373-386 (583)
124 PRK07251 pyridine nucleotide-d 34.8 27 0.00059 25.5 1.7 17 53-69 278-294 (438)
125 PRK06912 acoL dihydrolipoamide 34.7 22 0.00047 26.3 1.2 16 54-69 293-308 (458)
126 TIGR01811 sdhA_Bsu succinate d 34.6 22 0.00048 27.6 1.3 16 52-67 377-392 (603)
127 PRK05945 sdhA succinate dehydr 34.3 22 0.00048 27.3 1.2 15 55-69 367-381 (575)
128 TIGR03197 MnmC_Cterm tRNA U-34 34.1 83 0.0018 22.4 4.1 19 6-24 255-273 (381)
129 PRK06327 dihydrolipoamide dehy 33.9 25 0.00054 26.2 1.4 16 54-69 310-325 (475)
130 PTZ00052 thioredoxin reductase 33.9 24 0.00053 26.6 1.3 15 55-69 304-318 (499)
131 KOG2311 NAD/FAD-utilizing prot 33.5 55 0.0012 26.0 3.2 56 10-71 344-401 (679)
132 TIGR03385 CoA_CoA_reduc CoA-di 33.4 26 0.00056 25.4 1.4 16 54-69 257-272 (427)
133 PRK12779 putative bifunctional 33.3 16 0.00034 30.2 0.2 16 54-69 588-603 (944)
134 PRK12778 putative bifunctional 33.1 33 0.00071 27.2 2.0 16 54-69 711-726 (752)
135 PRK07573 sdhA succinate dehydr 32.8 25 0.00054 27.5 1.3 15 53-67 414-428 (640)
136 PRK12809 putative oxidoreducta 32.7 26 0.00057 27.3 1.4 16 54-69 596-611 (639)
137 PF11239 DUF3040: Protein of u 32.6 52 0.0011 18.8 2.4 18 1-20 1-18 (82)
138 PRK11259 solA N-methyltryptoph 32.5 1.5E+02 0.0032 20.7 5.1 52 6-67 285-338 (376)
139 PF08629 PDE8: PDE8 phosphodie 32.3 38 0.00083 18.2 1.6 15 54-68 36-50 (52)
140 PRK12814 putative NADPH-depend 31.6 31 0.00067 27.0 1.6 16 54-69 462-477 (652)
141 PRK06452 sdhA succinate dehydr 31.4 29 0.00063 26.6 1.4 17 53-69 354-371 (566)
142 KOG1752 Glutaredoxin and relat 31.3 33 0.00071 20.9 1.4 14 55-68 65-78 (104)
143 PF00890 FAD_binding_2: FAD bi 30.8 13 0.00028 26.7 -0.5 14 55-68 389-402 (417)
144 PTZ00139 Succinate dehydrogena 30.7 24 0.00053 27.5 0.9 15 55-69 399-413 (617)
145 TIGR01350 lipoamide_DH dihydro 30.5 30 0.00065 25.3 1.3 15 55-69 296-310 (461)
146 TIGR01377 soxA_mon sarcosine o 30.0 2E+02 0.0042 20.1 6.2 54 5-67 283-338 (380)
147 PRK12771 putative glutamate sy 29.9 34 0.00073 26.1 1.6 16 54-69 405-420 (564)
148 TIGR01813 flavo_cyto_c flavocy 29.6 23 0.0005 25.8 0.6 13 56-68 401-413 (439)
149 PRK06069 sdhA succinate dehydr 29.3 26 0.00057 26.8 0.9 13 57-69 370-382 (577)
150 TIGR03169 Nterm_to_SelD pyridi 29.3 34 0.00073 24.1 1.4 15 55-69 267-282 (364)
151 PRK12775 putative trifunctiona 29.3 37 0.00079 28.3 1.7 16 54-69 716-731 (1006)
152 PF14083 PGDYG: PGDYG protein 28.7 25 0.00054 21.5 0.5 13 64-76 77-89 (102)
153 PTZ00318 NADH dehydrogenase-li 28.6 37 0.0008 24.8 1.5 15 56-70 306-320 (424)
154 TIGR00275 flavoprotein, HI0933 27.9 20 0.00044 26.1 0.1 13 57-69 366-378 (400)
155 TIGR03862 flavo_PP4765 unchara 27.6 20 0.00043 26.5 -0.1 18 52-69 329-347 (376)
156 PRK05329 anaerobic glycerol-3- 27.0 46 0.001 24.9 1.8 24 49-72 368-394 (422)
157 PF14230 DUF4333: Domain of un 27.0 73 0.0016 18.2 2.3 20 3-22 20-39 (80)
158 PRK08294 phenol 2-monooxygenas 26.8 1.4E+02 0.0031 23.3 4.5 16 58-73 339-354 (634)
159 PF13769 Virulence_fact: Virul 26.4 89 0.0019 18.5 2.6 19 4-22 61-79 (86)
160 PRK07057 sdhA succinate dehydr 26.3 33 0.00071 26.6 0.9 14 56-69 381-394 (591)
161 TIGR02485 CobZ_N-term precorri 25.8 38 0.00082 24.7 1.1 14 55-68 384-397 (432)
162 PF08491 SE: Squalene epoxidas 25.5 25 0.00053 25.2 0.1 61 4-70 81-141 (276)
163 PF08178 GnsAB: GnsA/GnsB fami 25.4 86 0.0019 17.1 2.2 18 3-20 1-18 (54)
164 PRK08274 tricarballylate dehyd 25.1 37 0.00081 24.9 1.0 13 56-68 416-428 (466)
165 PF06183 DinI: DinI-like famil 24.9 1E+02 0.0022 17.2 2.5 18 5-22 6-23 (65)
166 TIGR03329 Phn_aa_oxid putative 24.9 2.4E+02 0.0051 20.8 5.2 54 6-67 317-372 (460)
167 PRK12834 putative FAD-binding 24.8 33 0.00072 26.1 0.7 14 55-68 501-514 (549)
168 PRK07121 hypothetical protein; 24.2 61 0.0013 24.2 2.0 14 55-68 446-459 (492)
169 PRK08626 fumarate reductase fl 24.1 53 0.0012 25.9 1.7 18 52-69 379-397 (657)
170 PRK13625 bis(5'-nucleosyl)-tet 22.7 52 0.0011 22.4 1.3 16 59-74 38-53 (245)
171 COG0665 DadA Glycine/D-amino a 22.6 2.8E+02 0.006 19.4 5.5 53 8-68 291-346 (387)
172 PF07451 SpoVAD: Stage V sporu 22.2 24 0.00053 25.9 -0.4 18 60-77 74-91 (329)
173 PF15031 DUF4528: Domain of un 21.9 38 0.00082 21.5 0.5 10 69-78 33-42 (126)
174 PRK05976 dihydrolipoamide dehy 21.9 53 0.0012 24.3 1.3 16 54-69 306-321 (472)
175 PF10921 DUF2710: Protein of u 21.8 1.1E+02 0.0023 18.9 2.4 19 2-20 13-31 (109)
176 PRK06481 fumarate reductase fl 21.5 40 0.00087 25.4 0.6 15 55-69 458-472 (506)
177 PF10407 Cytokin_check_N: Cdc1 21.4 1.8E+02 0.0038 16.7 3.9 20 5-24 15-34 (73)
178 smart00279 HhH2 Helix-hairpin- 21.3 33 0.00071 16.8 0.1 9 63-71 10-18 (36)
179 PRK00711 D-amino acid dehydrog 21.3 2.1E+02 0.0046 20.3 4.3 54 6-67 326-380 (416)
180 PRK11439 pphA serine/threonine 21.2 43 0.00092 22.4 0.6 18 58-75 45-62 (218)
181 cd07413 MPP_PA3087 Pseudomonas 21.1 57 0.0012 21.9 1.2 17 59-75 35-51 (222)
182 PRK12842 putative succinate de 21.0 48 0.001 25.4 0.9 14 55-68 521-534 (574)
183 TIGR02374 nitri_red_nirB nitri 20.9 57 0.0012 26.2 1.4 18 54-71 260-277 (785)
184 cd00144 MPP_PPP_family phospho 20.8 65 0.0014 21.0 1.4 17 58-74 25-41 (225)
185 PHA02239 putative protein phos 20.6 69 0.0015 21.9 1.6 18 58-75 30-47 (235)
186 KOG2962 Prohibitin-related mem 20.4 1.8E+02 0.0038 20.9 3.6 28 5-35 145-172 (322)
187 PRK12844 3-ketosteroid-delta-1 20.3 55 0.0012 25.1 1.1 14 55-68 504-517 (557)
188 TIGR03315 Se_ygfK putative sel 20.3 62 0.0013 27.2 1.4 16 54-69 801-816 (1012)
189 PRK12839 hypothetical protein; 20.2 51 0.0011 25.5 0.9 14 55-68 522-535 (572)
No 1
>PLN02487 zeta-carotene desaturase
Probab=99.78 E-value=7.1e-19 Score=132.94 Aligned_cols=73 Identities=73% Similarity=1.098 Sum_probs=68.4
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEeccccccccc
Q 034934 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQYGR 73 (78)
Q Consensus 1 ~~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~~~nL~lAGDwt~~~~~ 73 (78)
+++++|||+++++++|.++||.+..+.+.+++|+|+++|||.+.||++..||.++|+++|||||||||+|.-|
T Consensus 460 ~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~~yP 532 (569)
T PLN02487 460 MPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQDYI 532 (569)
T ss_pred cCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCcccccCCc
Confidence 4689999999999999999999777788999999999999999999999999999999999999999998654
No 2
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.78 E-value=1.1e-18 Score=128.84 Aligned_cols=73 Identities=64% Similarity=0.969 Sum_probs=68.0
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEeccccccccc
Q 034934 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQYGR 73 (78)
Q Consensus 1 ~~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~~~nL~lAGDwt~~~~~ 73 (78)
+++++|||+++++++|+++||....+++++++|+|+++|+|.+.||++.+||+++|+++|||||||||+|.-|
T Consensus 384 ~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~~~~p 456 (474)
T TIGR02732 384 MPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLAGSYTQQDYI 456 (474)
T ss_pred cCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEeccccccCch
Confidence 3689999999999999999998777889999999999999999999999999999999999999999998544
No 3
>PLN02612 phytoene desaturase
Probab=99.35 E-value=3.5e-12 Score=96.25 Aligned_cols=70 Identities=31% Similarity=0.547 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCC-----CCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEeccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSS-----QGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~-----~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~~~nL~lAGDwt~~~ 71 (78)
.+++||+++.++++|+++||.. ..+.+..+.+++.+++++.+.||....||.++||++|||+|||||.+.
T Consensus 451 ~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~t~~~ 525 (567)
T PLN02612 451 SRSDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQK 525 (567)
T ss_pred cCCHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCCcccCccccCccCCEEEeecceeCC
Confidence 5789999999999999999964 236678888999999999999999989999999999999999999875
No 4
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.27 E-value=2e-11 Score=88.82 Aligned_cols=73 Identities=36% Similarity=0.569 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCC----CCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecccccccccC
Q 034934 2 PLPNDEIIRRVAKQVLALFPSS----QGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQYGRS 74 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~----~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~~~nL~lAGDwt~~~~~~ 74 (78)
.+++||++++++++|.++||.. ....+++..++++++++|.+.||...++|..++|++|||+||||+++.-++
T Consensus 360 ~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~pg~~~~~~~~~~p~~~l~~AG~~~a~~~~g 436 (453)
T TIGR02731 360 GRSDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYLA 436 (453)
T ss_pred cCCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCceeccCCCChhhCccccCccCCEEEeehhccCcccc
Confidence 5789999999999999999852 244577788999999999999998888999999999999999999976554
No 5
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.09 E-value=4.2e-10 Score=79.75 Aligned_cols=73 Identities=27% Similarity=0.540 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecccccccccC
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQYGRS 74 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~~~nL~lAGDwt~~~~~~ 74 (78)
.+++||+++.++++|.+++|......+.+.++.+.+++.+.+.||....+|...++++|||+||||+++..++
T Consensus 329 ~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~~ 401 (419)
T TIGR03467 329 DLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGLNRLRPGARTPWPNLFLAGDWTATGWPA 401 (419)
T ss_pred cCCHHHHHHHHHHHHHHhcCccccCCccceEEEEccCCccccCCcccccCCCCCCCcCCEEEecccccCCCcc
Confidence 5789999999999999999965445667788999999999998998777998889999999999999975443
No 6
>PRK07233 hypothetical protein; Provisional
Probab=99.00 E-value=1.7e-09 Score=77.27 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEeccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~~~nL~lAGDwt~~~ 71 (78)
.+++++++++++++|.+++|......++...+.|+++|.+.+.||....+|...++++|||+|||++..+
T Consensus 339 ~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~~ 408 (434)
T PRK07233 339 QMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEPGYLDKIPPYDTPIEGLYLAGMSQIYP 408 (434)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEEeccccccccCchhhcCCCcccCcCCEEEeCCcccCC
Confidence 4688999999999999999976556788899999999999999998788999999999999999954433
No 7
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=6.2e-10 Score=83.41 Aligned_cols=69 Identities=38% Similarity=0.534 Sum_probs=62.4
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEeccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~~~nL~lAGDwt~~~ 71 (78)
..+++++...+.+++..++|....++ .+++++++.++.+...||++.+||.+.||++|+++||||+.+-
T Consensus 372 ~~~~~~~~a~~e~~~~~~vP~~~~a~-~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~~ 440 (485)
T COG3349 372 FESDEAIVATFEKELYELVPSLAEAK-LKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQP 440 (485)
T ss_pred ccchhhHHHHHHHHhhhcCCchhccc-ccccceeccccccccCCCccccCCCCCCCccchhhccceeecC
Confidence 35788999999999999999865566 7788999999999999999999999999999999999999854
No 8
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.12 E-value=2.6e-06 Score=61.85 Aligned_cols=67 Identities=16% Similarity=0.194 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCC----CCCCCCCEEEecccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRD----QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~----~~T~~~nL~lAGDwt~~ 70 (78)
+++++|+++.+.++|.++++.. ..+....+.+.+.|.+.+.+|.....+. ..+..+||++||||...
T Consensus 369 ~~~~ee~~~~v~~~L~~~~gi~--~~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g 439 (462)
T TIGR00562 369 DLSENEIINIVLRDLKKVLNIN--NEPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEG 439 (462)
T ss_pred CCCHHHHHHHHHHHHHHHhCCC--CCCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCC
Confidence 5789999999999999999743 3367788999999999999997544443 33556899999999763
No 9
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=98.04 E-value=1.5e-06 Score=60.28 Aligned_cols=70 Identities=21% Similarity=0.376 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeC-----CceecCCCCCCC--CCCCCCCCC-CCEEEeccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIG-----QSLCGEGPGKDP--FRRDQKTPV-KNFFLAGSYTKQY 71 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~-----~At~~~~pg~~~--~RP~~~T~~-~nL~lAGDwt~~~ 71 (78)
.+++||+++.++++|++++|......+....+.+.. +.++.+.+.... .+|...+++ +|||+||||+++.
T Consensus 353 ~~~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~ 430 (450)
T PF01593_consen 353 DLSDEEILERVLDDLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPG 430 (450)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSS
T ss_pred ccchhhhHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCC
Confidence 578999999999999999995222333333343322 333443333333 577788898 7999999999966
No 10
>PLN02576 protoporphyrinogen oxidase
Probab=97.97 E-value=3.9e-06 Score=61.74 Aligned_cols=70 Identities=11% Similarity=0.121 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCC---CC--CCEEEeccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKT---PV--KNFFLAGSYTKQY 71 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T---~~--~nL~lAGDwt~~~ 71 (78)
.+++||+++.+.++|.++++......+....+.+.+.|.+.+.+|+....+..+. .. +||++||||+...
T Consensus 393 ~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g~ 467 (496)
T PLN02576 393 SASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLFLGGNYRGGV 467 (496)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEEEeccccCCc
Confidence 4789999999999999999853212334455677788999999998654443332 22 7999999999743
No 11
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.97 E-value=1.2e-05 Score=57.98 Aligned_cols=65 Identities=11% Similarity=0.144 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCC----CCCCCCCCCCEEEeccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPF----RRDQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~----RP~~~T~~~nL~lAGDwt~ 69 (78)
.++++++++.++++|+++++.. .......+.+.+.|.+.+.||.... ++.... ++|||+||||+.
T Consensus 362 ~~~~~~~~~~~~~~L~~~~g~~--~~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~aG~~~~ 430 (451)
T PRK11883 362 DATDEELVAFVLADLSKVMGIT--GDPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPH-YPGLYVAGASFE 430 (451)
T ss_pred cCCHHHHHHHHHHHHHHHhCCC--CCceEEEEeecCccCCCCCccHHHHHHHHHHhhhh-CCCEEEECcccC
Confidence 4679999999999999998742 3345678888889999899986533 233333 789999999986
No 12
>PRK07208 hypothetical protein; Provisional
Probab=97.92 E-value=5.4e-06 Score=60.75 Aligned_cols=67 Identities=10% Similarity=0.014 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCC---CCCCCCCEEEeccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRD---QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~---~~T~~~nL~lAGDwt~ 69 (78)
.++||||++++.++|.++.+ .....++.++|.+.++|.+.+.+|.....+. ..++.+||++||++..
T Consensus 368 ~~~deel~~~~~~~L~~l~~-~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~ 437 (479)
T PRK07208 368 NMSDEDLIALAIQELARLGL-IRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGM 437 (479)
T ss_pred cCCHHHHHHHHHHHHHHcCC-CChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeeccccc
Confidence 47899999999999999854 3357788999999999999999887655443 2367899999998764
No 13
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.89 E-value=5.8e-05 Score=55.73 Aligned_cols=66 Identities=15% Similarity=0.245 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCceeeEEEE----------EeCCceecCCCCCCC---CCCCCCCCCCCEEEeccccccc
Q 034934 5 NDEIIRRVAKQVLALFPSSQGLEVIWSSFV----------KIGQSLCGEGPGKDP---FRRDQKTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 5 ~eel~~~~~~~L~~~~P~~~~~~v~~~~v~----------~e~~At~~~~pg~~~---~RP~~~T~~~nL~lAGDwt~~~ 71 (78)
++++.+++++.|++.+|+.. ..++...+. ....+.|.......+ .+|..+|+++||||||++|.+.
T Consensus 393 k~~~~~~il~~le~~~p~l~-~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLyl~G~~~~pG 471 (492)
T TIGR02733 393 KKQYTQTIIERLGHYFDLLE-ENWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLWLCGDSIHPG 471 (492)
T ss_pred HHHHHHHHHHHHHHHCCCcc-ccEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeEEecCccCCC
Confidence 46688999999999999752 444444332 122455555443322 3566689999999999999764
No 14
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.71 E-value=9.3e-05 Score=54.87 Aligned_cols=66 Identities=11% Similarity=0.178 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCceeeEEEEE---------eCCceecCCCCCC---CCC-CCCCCCCCCEEEeccccccc
Q 034934 5 NDEIIRRVAKQVLALFPSSQGLEVIWSSFVK---------IGQSLCGEGPGKD---PFR-RDQKTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 5 ~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~---------e~~At~~~~pg~~---~~R-P~~~T~~~nL~lAGDwt~~~ 71 (78)
++++.+++++.|++.+|+.. ..++...+.. ..+..+...+... ..+ |..+|+++||||||+||.+.
T Consensus 393 k~~~~~~il~~l~~~~p~l~-~~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~~~pG 471 (493)
T TIGR02730 393 KEADAERIIDRLEKIFPGLD-SAIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDSCFPG 471 (493)
T ss_pred HHHHHHHHHHHHHHHCCChh-hcEEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCeEEecCcCCCC
Confidence 56689999999999999752 3444333321 1122221111100 122 66789999999999999653
No 15
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.63 E-value=0.00018 Score=53.18 Aligned_cols=66 Identities=14% Similarity=0.093 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHH-CCCCCCCceeeEEEE----------EeCCceecCCCCCC---CCCCC-CCCCCCCEEEeccccc
Q 034934 5 NDEIIRRVAKQVLAL-FPSSQGLEVIWSSFV----------KIGQSLCGEGPGKD---PFRRD-QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 5 ~eel~~~~~~~L~~~-~P~~~~~~v~~~~v~----------~e~~At~~~~pg~~---~~RP~-~~T~~~nL~lAGDwt~ 69 (78)
++++.+++++.|++. +|+.. ..|+...+. ....+.+...+... ..||. ..|+++||||||+||.
T Consensus 391 k~~~~~~il~~l~~~~~p~l~-~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl~G~~~~ 469 (502)
T TIGR02734 391 GPRYRDRILAYLEERAIPGLR-DRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTH 469 (502)
T ss_pred HHHHHHHHHHHHHHhcCCChh-HheEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCEEEeCCCCC
Confidence 467889999999997 99753 334433322 12345565543322 35775 4789999999999997
Q ss_pred cc
Q 034934 70 QY 71 (78)
Q Consensus 70 ~~ 71 (78)
+.
T Consensus 470 pG 471 (502)
T TIGR02734 470 PG 471 (502)
T ss_pred CC
Confidence 64
No 16
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.56 E-value=8.6e-05 Score=54.30 Aligned_cols=68 Identities=10% Similarity=0.011 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCC----CCCCCCCCCCEEEeccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPF----RRDQKTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~----RP~~~T~~~nL~lAGDwt~~~ 71 (78)
.+++||+++.++++|+++|+.. ..+....+.+-+.+.+...+|.... ++....+.+||++||||+...
T Consensus 370 ~~~dee~~~~~~~~L~~~lG~~--~~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g~ 441 (463)
T PRK12416 370 NYSEEELVRVALYDIEKSLGIK--GEPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYGV 441 (463)
T ss_pred cCCHHHHHHHHHHHHHHHhCCC--CCceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEeccccccc
Confidence 4689999999999999999743 3566788888888888887774221 122334568999999998754
No 17
>PLN02268 probable polyamine oxidase
Probab=97.24 E-value=0.00044 Score=50.14 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEe---CCc--eec-CCCCCC-CCCCCCCCCCCCEEEeccccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKI---GQS--LCG-EGPGKD-PFRRDQKTPVKNFFLAGSYTKQYGR 73 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e---~~A--t~~-~~pg~~-~~RP~~~T~~~nL~lAGDwt~~~~~ 73 (78)
.++++|+++.++++|.+++|.. ..+....+.+- +.+ .|. +.||.. ..++....|+.|||+||++|++..+
T Consensus 337 ~~~~~e~~~~v~~~L~~~~~~~--~~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~ 413 (435)
T PLN02268 337 KLSDEAAANFAMSQLKKMLPDA--TEPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFP 413 (435)
T ss_pred hCCHHHHHHHHHHHHHHHcCCC--CCccEEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCccc
Confidence 4789999999999999999853 33444444432 211 122 356642 2345556788899999999987543
No 18
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.99 E-value=0.0032 Score=48.00 Aligned_cols=68 Identities=22% Similarity=0.254 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCceeeEEE---------E-EeCCceecCCCCCC---CCCCCC-----CCCCCCEEEec
Q 034934 4 PNDEIIRRVAKQVLALFPSSQGLEVIWSSF---------V-KIGQSLCGEGPGKD---PFRRDQ-----KTPVKNFFLAG 65 (78)
Q Consensus 4 ~~eel~~~~~~~L~~~~P~~~~~~v~~~~v---------~-~e~~At~~~~pg~~---~~RP~~-----~T~~~nL~lAG 65 (78)
-+++.++++++.+.+++|.+... ++...+ + +.+...|..+-|.. -.||.. +|||+||||||
T Consensus 443 ~K~~~ae~~~~~ie~l~Pgfsss-v~~~dvgTP~t~qr~l~~~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcG 521 (561)
T KOG4254|consen 443 KKEAFAERVFSVIEKLAPGFSSS-VESYDVGTPPTHQRFLGRPGGNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCG 521 (561)
T ss_pred HHHHHHHHHHHHHHHHcCCccce-EEEEecCCCchhhHHhcCCCCcccCcccccccccccCCccccccCCCCCCceEEec
Confidence 36778999999999999987433 433332 2 23345565444433 348888 99999999999
Q ss_pred ccccccc
Q 034934 66 SYTKQYG 72 (78)
Q Consensus 66 Dwt~~~~ 72 (78)
|-+.+.+
T Consensus 522 s~afPGg 528 (561)
T KOG4254|consen 522 SGAFPGG 528 (561)
T ss_pred CCCCCCC
Confidence 8776543
No 19
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=96.37 E-value=0.0017 Score=48.74 Aligned_cols=67 Identities=10% Similarity=0.058 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCC----CCCCCCEEEecccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQ----KTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~----~T~~~nL~lAGDwt~~ 70 (78)
.++||||++.++++|.++++....+. ...|.|.+++-+.+.+|+..++... .+-.+||+++|-|-.-
T Consensus 355 ~~~dee~~~~~l~~L~~~~~~~~~~~--~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g 425 (444)
T COG1232 355 TMSDEELVAAVLDDLKKLGGINGDPV--FVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEG 425 (444)
T ss_pred ccCHHHHHHHHHHHHHHHcCcCcchh--heeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCC
Confidence 47899999999999999999653333 7889999999999999987554333 3334789999977554
No 20
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.86 E-value=0.035 Score=41.61 Aligned_cols=65 Identities=20% Similarity=0.343 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCCceeeEEEEEeC----------CceecCC---CCCCCCCCCC-CCCCCCEEEeccccccc
Q 034934 6 DEIIRRVAKQVLALFPSSQGLEVIWSSFVKIG----------QSLCGEG---PGKDPFRRDQ-KTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 6 eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~----------~At~~~~---pg~~~~RP~~-~T~~~nL~lAGDwt~~~ 71 (78)
+++.+. ..++++..|..+ ..++..++..-. ...+... ......||.. +|+++|||++|++|.+.
T Consensus 385 ~~~~~~-~~~~~~~~p~~~-~~iv~~~~~tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i~~LYl~Ga~t~PG 462 (487)
T COG1233 385 ESLADA-IDALEELAPGLR-DRIVAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIKGLYLVGASTHPG 462 (487)
T ss_pred HHHHHH-HHHHhhcCCCcc-cceeEEEEeChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCcCceEEeCCcCCCC
Confidence 444444 557889999764 334444443211 1112211 1122446755 59999999999999865
Q ss_pred c
Q 034934 72 G 72 (78)
Q Consensus 72 ~ 72 (78)
+
T Consensus 463 ~ 463 (487)
T COG1233 463 G 463 (487)
T ss_pred C
Confidence 5
No 21
>PLN02529 lysine-specific histone demethylase 1
Probab=95.21 E-value=0.086 Score=41.95 Aligned_cols=72 Identities=11% Similarity=0.125 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCC--CCCceeeEEEEEeCCc-----eecC-CCCCCC--CCCCCCCCCCCEEEeccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSS--QGLEVIWSSFVKIGQS-----LCGE-GPGKDP--FRRDQKTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~--~~~~v~~~~v~~e~~A-----t~~~-~pg~~~--~RP~~~T~~~nL~lAGDwt~~~ 71 (78)
.++++++++.++++|+++|+.. ..+.+....+.+-... .|++ .||... +....++...+||+|||+|...
T Consensus 496 ~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~ 575 (738)
T PLN02529 496 NTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQ 575 (738)
T ss_pred cCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCC
Confidence 4788999999999999999631 1123333333332211 1222 222211 1111122347899999999975
Q ss_pred cc
Q 034934 72 GR 73 (78)
Q Consensus 72 ~~ 73 (78)
.+
T Consensus 576 ~p 577 (738)
T PLN02529 576 YP 577 (738)
T ss_pred CC
Confidence 44
No 22
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.57 E-value=0.094 Score=39.93 Aligned_cols=73 Identities=21% Similarity=0.273 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEE-----eCCceecC-CCCCCCCC-CCCCCCCCC-EEEeccccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVK-----IGQSLCGE-GPGKDPFR-RDQKTPVKN-FFLAGSYTKQYGR 73 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~-----e~~At~~~-~pg~~~~R-P~~~T~~~n-L~lAGDwt~~~~~ 73 (78)
.+++++++..++..|+++|+...-....+..|.+ ....++.+ .+|....+ +....|+.| +|+||.+|.+..+
T Consensus 359 ~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~~ 438 (501)
T KOG0029|consen 359 TLSDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRKYP 438 (501)
T ss_pred cCCHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcccCC
Confidence 5789999999999999999932233344444444 22333332 22322222 344678888 9999999997665
Q ss_pred C
Q 034934 74 S 74 (78)
Q Consensus 74 ~ 74 (78)
.
T Consensus 439 ~ 439 (501)
T KOG0029|consen 439 G 439 (501)
T ss_pred C
Confidence 4
No 23
>PLN02976 amine oxidase
Probab=94.50 E-value=0.083 Score=45.25 Aligned_cols=72 Identities=17% Similarity=0.159 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCc-----eec-CCCCCCC-CCCCCCCCCCC-EEEeccccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQS-----LCG-EGPGKDP-FRRDQKTPVKN-FFLAGSYTKQYGR 73 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~A-----t~~-~~pg~~~-~RP~~~T~~~n-L~lAGDwt~~~~~ 73 (78)
.++++++++.++++|+++|+....+.+....+.+-... .|. ..||... .+.....|+.| ||+||+.|....+
T Consensus 1086 sLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVggRLFFAGEATS~~~p 1165 (1713)
T PLN02976 1086 SMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATCKEHP 1165 (1713)
T ss_pred hCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCCCcEEEEehhhhCCCc
Confidence 47899999999999999998532234555555442222 222 2345322 12223356666 9999998876544
No 24
>PLN02676 polyamine oxidase
Probab=94.21 E-value=0.11 Score=39.05 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEE---eCC--ceec-CCCCCCC-CCCCCCCCCCCEEEeccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVK---IGQ--SLCG-EGPGKDP-FRRDQKTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~---e~~--At~~-~~pg~~~-~RP~~~T~~~nL~lAGDwt~~~ 71 (78)
.+++++.++.++++|+++|+.. -..+....+.. ++. ..|. +.||... ..+.-+.|+.+||+||+.|+..
T Consensus 375 ~~s~e~~~~~vl~~L~~~~g~~-~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~ 450 (487)
T PLN02676 375 QQPDSETKAEIMEVLRKMFGPN-IPEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEK 450 (487)
T ss_pred hCCHHHHHHHHHHHHHHHhCCC-CCCcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccc
Confidence 4788999999999999999732 12333333222 221 2222 4556432 2334456778999999988754
No 25
>PLN03000 amine oxidase
Probab=94.09 E-value=0.25 Score=40.15 Aligned_cols=72 Identities=14% Similarity=0.169 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCC--CCCceeeEEEEEeCCceec------CCCCCCC-CCCCCCCCC--CCEEEecccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSS--QGLEVIWSSFVKIGQSLCG------EGPGKDP-FRRDQKTPV--KNFFLAGSYTKQ 70 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~--~~~~v~~~~v~~e~~At~~------~~pg~~~-~RP~~~T~~--~nL~lAGDwt~~ 70 (78)
.++++|+++.++++|+++|+.. .-..+....+.+-...-|. +.||... .+..-..|+ .+||+||+.|..
T Consensus 520 ~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~ 599 (881)
T PLN03000 520 TMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTR 599 (881)
T ss_pred cCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhC
Confidence 4789999999999999999631 1123444544442222222 2334321 122223354 379999999986
Q ss_pred ccc
Q 034934 71 YGR 73 (78)
Q Consensus 71 ~~~ 73 (78)
..+
T Consensus 600 ~~~ 602 (881)
T PLN03000 600 RYP 602 (881)
T ss_pred CCC
Confidence 443
No 26
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=93.87 E-value=0.31 Score=39.30 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHHHHCCCC--CCCceeeEEEEEeCCceec------CCCCCCC-CCCCCCCCC--CCEEEecccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSS--QGLEVIWSSFVKIGQSLCG------EGPGKDP-FRRDQKTPV--KNFFLAGSYTKQ 70 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~--~~~~v~~~~v~~e~~At~~------~~pg~~~-~RP~~~T~~--~nL~lAGDwt~~ 70 (78)
.++++++++.++++|+++|+.. ....+....+.+-...-|. ..||... ..+....|+ .+||+||++|..
T Consensus 576 ~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~ 655 (808)
T PLN02328 576 TLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNK 655 (808)
T ss_pred cCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhC
Confidence 4789999999999999999631 1233444555543333222 2344321 112212343 489999999986
Q ss_pred cc
Q 034934 71 YG 72 (78)
Q Consensus 71 ~~ 72 (78)
..
T Consensus 656 ~~ 657 (808)
T PLN02328 656 QY 657 (808)
T ss_pred CC
Confidence 43
No 27
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=91.99 E-value=0.31 Score=36.26 Aligned_cols=57 Identities=18% Similarity=0.323 Sum_probs=36.3
Q ss_pred HHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCC-CCCEEEecccccccc
Q 034934 11 RVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTP-VKNFFLAGSYTKQYG 72 (78)
Q Consensus 11 ~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~-~~nL~lAGDwt~~~~ 72 (78)
.+..++-+.+|....+++....+.. +-+|..+|-. .+.-+|. ++|||+||+-+-+.|
T Consensus 312 ~~Q~~~~r~IpGLe~a~~~r~Gy~~--ey~~v~~~~l---~~~l~~k~~~~lf~AGqi~G~~G 369 (392)
T PF01134_consen 312 DVQKRIFRSIPGLENAEILRPGYAH--EYDFVDPPQL---LNTLETKKIPGLFFAGQINGTEG 369 (392)
T ss_dssp HHHHHHHTTSTTTTT--EEE--EEE--EEEEE-GGGB---BTTSBBSSSBTEEE-GGGGTB-S
T ss_pred HHHHHHhhcCCChhcChhhheEEee--eeeEEehhhc---ccceEECCCCCceECCCCcchhH
Confidence 4566777889998888887766655 4577776653 3466775 999999999776543
No 28
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=90.43 E-value=0.39 Score=36.23 Aligned_cols=57 Identities=19% Similarity=0.287 Sum_probs=41.4
Q ss_pred HHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCC-CCCCEEEecccccccc
Q 034934 12 VAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKT-PVKNFFLAGSYTKQYG 72 (78)
Q Consensus 12 ~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T-~~~nL~lAGDwt~~~~ 72 (78)
+..++-+.+|....+++....+.. +=+|...|.. .-+.-++ .++|||+||+-+...|
T Consensus 287 ~Q~~~~r~Ipgle~a~~~r~G~~~--~~~~i~~p~~--l~~~l~~k~~~~l~~AGqi~g~~G 344 (436)
T PRK05335 287 EQKRVFRMIPGLENAEFVRYGVMH--RNTFINSPKL--LDPTLQLKKRPNLFFAGQITGVEG 344 (436)
T ss_pred HHHHHHhcccchhceEEEeceEEe--eccccCChhh--CchhccccCCCCEEeeeeecCchH
Confidence 456677889998888887777765 4577777765 3445555 6899999999886543
No 29
>PLN02568 polyamine oxidase
Probab=90.24 E-value=0.61 Score=35.71 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCC
Q 034934 2 PLPNDEIIRRVAKQVLALFPS 22 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~ 22 (78)
.++++++++.+++.|+++|+.
T Consensus 402 ~l~~~~~~~~~~~~L~~~~g~ 422 (539)
T PLN02568 402 KLSDEEIIRGVQTTLSSFLKR 422 (539)
T ss_pred cCCHHHHHHHHHHHHHHHcCC
Confidence 478999999999999999973
No 30
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=88.70 E-value=0.47 Score=35.68 Aligned_cols=58 Identities=19% Similarity=0.278 Sum_probs=41.8
Q ss_pred HHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCC-CCCCEEEecccccccc
Q 034934 11 RVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKT-PVKNFFLAGSYTKQYG 72 (78)
Q Consensus 11 ~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T-~~~nL~lAGDwt~~~~ 72 (78)
.+..++-+.+|....++++...+.. +=+|..+|-. ..|.-++ .++|||+||.-+-+.|
T Consensus 285 ~~Q~~~~r~ipgle~a~~~r~g~~~--~~~~i~~p~~--L~~~l~~k~~~~lf~AGQi~G~~G 343 (433)
T TIGR00137 285 GEQKRVFRLIPGLENAEFVRMGVMH--RNTFINSPQL--LTASLHFKDRQTLFFAGQLTGVEG 343 (433)
T ss_pred HHHHHHHhcCcCccceEEeecceEE--eeeeeCCHHH--hhHHhccCCCCCEEECcccccchH
Confidence 3456677889998888887777665 4577777765 5666666 5799999997665543
No 31
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=87.16 E-value=0.9 Score=33.04 Aligned_cols=66 Identities=11% Similarity=0.124 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecccccc
Q 034934 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 1 ~~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~~~nL~lAGDwt~~ 70 (78)
+++++|..+..+.....++++. ..+++..+.+.+-+.|.+...-+. -|...-+--+||.||||...
T Consensus 245 ~~~~~e~~i~~l~aA~~~~~~~-~~~~p~~s~~H~WrYA~P~~~~~~---~~L~ad~~~~l~~cGDwc~G 310 (331)
T COG3380 245 LDHPAEQVIVALRAAAQELDGD-RLPEPDWSDAHRWRYAIPNDAVAG---PPLDADRELPLYACGDWCAG 310 (331)
T ss_pred hcCCHHHHHHHHHHhhhhccCC-CCCcchHHHhhccccccccccccC---CccccCCCCceeeecccccC
Confidence 3577888887777777777763 124444555666666666544332 23222333459999999875
No 32
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=75.54 E-value=11 Score=28.71 Aligned_cols=67 Identities=18% Similarity=0.178 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceee------EEEEEeCCceecCCCCCC-CCCCCCCCCCCCEEEec-ccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIW------SSFVKIGQSLCGEGPGKD-PFRRDQKTPVKNFFLAG-SYT 68 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~------~~v~~e~~At~~~~pg~~-~~RP~~~T~~~nL~lAG-Dwt 68 (78)
.++.+|.++.++.++.++||+........ .+.......+-...||+. +.=|...-|...+++|| .+.
T Consensus 348 ~~~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEha 422 (450)
T COG1231 348 ALPEAERRQKVLARLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHA 422 (450)
T ss_pred cCCHHHHHHHHHHhHhhhCChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeeccc
Confidence 57899999999999999999532222222 112222233334556653 22355556788999999 443
No 33
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=75.42 E-value=4.4 Score=32.00 Aligned_cols=58 Identities=17% Similarity=0.338 Sum_probs=34.9
Q ss_pred HHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCC-CCCEEEecccccccc
Q 034934 10 RRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTP-VKNFFLAGSYTKQYG 72 (78)
Q Consensus 10 ~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~-~~nL~lAGDwt~~~~ 72 (78)
..+..++-+..|....+++....+.. +-.|.. |- ...+.-+|. ++|||+|||-.-+.|
T Consensus 313 ~~~q~~i~~~ipGle~a~~~r~gy~~--e~~~i~-p~--~l~~~le~k~~~gLf~AGqi~Gt~G 371 (617)
T TIGR00136 313 EDVQLQIVRSIPGLENAEILRPGYAI--EYDFFD-PR--QLKPTLETKLIQGLFFAGQINGTTG 371 (617)
T ss_pred HHHHHHHHHcCcCcccceEeccccce--EEeEEC-hh--hCchhheeCCCCCeEEccccCCcch
Confidence 34566677778987666665422222 113333 32 245666775 899999999655443
No 34
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=73.12 E-value=2.4 Score=30.33 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=18.7
Q ss_pred CCCCCCCCCCEEEeccccccccc
Q 034934 51 RRDQKTPVKNFFLAGSYTKQYGR 73 (78)
Q Consensus 51 RP~~~T~~~nL~lAGDwt~~~~~ 73 (78)
....+|++||+|.|||-+....+
T Consensus 258 ~~~~~TsvpGifAaGDv~~~~~r 280 (305)
T COG0492 258 DEEMETSVPGIFAAGDVADKNGR 280 (305)
T ss_pred CCCcccCCCCEEEeEeeccCccc
Confidence 34588999999999998876554
No 35
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=71.55 E-value=2.7 Score=32.19 Aligned_cols=67 Identities=13% Similarity=0.140 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCC-----CCCCCCCEEEecccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRD-----QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~-----~~T~~~nL~lAGDwt~~ 70 (78)
..+.||+++.+..+|++++.-... .....+.-.+++.+-+..|.....=. +..+--+||+||.|..-
T Consensus 401 ~~S~ee~~~~v~~alq~~Lgi~~~--P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~l~l~G~~y~G 472 (491)
T KOG1276|consen 401 VPSPEELVNAVTSALQKMLGISNK--PVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPGLGLFLGGNHYGG 472 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCC--cccccceehhhcccceecchHHHHHHHHHHHHhCCCCceEeeccccCC
Confidence 357899999999999999975433 33344444568999999997644221 12223479999988764
No 36
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=71.41 E-value=3.4 Score=26.24 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=15.2
Q ss_pred CCCCCCCCCCEEEecccccc
Q 034934 51 RRDQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 51 RP~~~T~~~nL~lAGDwt~~ 70 (78)
-+..+|..+|+|.|||-+.-
T Consensus 180 d~~~~t~~~~Iya~GD~a~~ 199 (201)
T PF07992_consen 180 DENLQTSVPGIYAAGDCAGI 199 (201)
T ss_dssp BTTSBBSSTTEEE-GGGBEE
T ss_pred cccccccccccccccccccc
Confidence 45667889999999997653
No 37
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=70.10 E-value=5.6 Score=31.39 Aligned_cols=57 Identities=19% Similarity=0.346 Sum_probs=36.6
Q ss_pred HHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCC-CCCCEEEecccccccc
Q 034934 11 RVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKT-PVKNFFLAGSYTKQYG 72 (78)
Q Consensus 11 ~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T-~~~nL~lAGDwt~~~~ 72 (78)
.+..++-+.+|....+++....+..| =.|.. |.. ..|.-+| .++|||+||.-+-+.|
T Consensus 316 ~~Q~~~~r~ipGle~a~i~r~gy~ie--yd~i~-p~~--L~~~Le~k~~~~lf~AGQinGt~G 373 (618)
T PRK05192 316 DVQLEMLRSIPGLENAEILRPGYAIE--YDYVD-PRQ--LKPTLETKKIKGLFFAGQINGTTG 373 (618)
T ss_pred HHHHHHHhcCcCccceeEeeccccee--ecccC-hhh--cchhheecCCCCeEECcccCCChH
Confidence 45667778889877777655544332 13333 433 5677777 5799999997665543
No 38
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=69.73 E-value=2.4 Score=30.32 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=17.0
Q ss_pred CCCCCCC-CCCCCEEEeccccc
Q 034934 49 PFRRDQK-TPVKNFFLAGSYTK 69 (78)
Q Consensus 49 ~~RP~~~-T~~~nL~lAGDwt~ 69 (78)
..||+.. |++||+|-|||--+
T Consensus 273 ~t~pgts~TsvpG~FAAGDVqD 294 (322)
T KOG0404|consen 273 VTRPGTSLTSVPGVFAAGDVQD 294 (322)
T ss_pred EeccCcccccccceeeccccch
Confidence 4588554 89999999999765
No 39
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=69.05 E-value=2.8 Score=31.41 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=39.4
Q ss_pred HHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCC-CCCCCEEEeccccc
Q 034934 13 AKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQK-TPVKNFFLAGSYTK 69 (78)
Q Consensus 13 ~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~-T~~~nL~lAGDwt~ 69 (78)
..++-+++|....++++...|.. |-||...|... -+.-+ -.-||||.||.-|-
T Consensus 292 QkrVf~mIPgLeNAefvRyGvmH--RNtfinSP~lL--~~tl~lk~~p~l~fAGQitG 345 (439)
T COG1206 292 QKRVFRMIPGLENAEFVRYGVMH--RNTFINSPKLL--DPTLQLKKRPNLFFAGQITG 345 (439)
T ss_pred hhhhhhhcCCcchhhhhhcccee--cccccCChhhh--hHHhhcccCCCcEEeeeeec
Confidence 35667888998889988888876 89999999763 23222 35689999997765
No 40
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=65.84 E-value=16 Score=28.28 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCce---eeEEEEEeC--CceecC-CCCCC--------CCCC-CCCCCCCCEEEecc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEV---IWSSFVKIG--QSLCGE-GPGKD--------PFRR-DQKTPVKNFFLAGS 66 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v---~~~~v~~e~--~At~~~-~pg~~--------~~RP-~~~T~~~nL~lAGD 66 (78)
.++|||+.+.+..-|+.++....-+.+ ..+.-+.++ |.-|++ ++|+. .-+| ...++-|.+.+||.
T Consensus 384 ~lsdEev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FAGE 463 (498)
T KOG0685|consen 384 TLSDEEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFAGE 463 (498)
T ss_pred hCCHHHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEEEccc
Confidence 589999999999999999975322332 222222222 222332 22221 1133 33357788999999
Q ss_pred cccccc
Q 034934 67 YTKQYG 72 (78)
Q Consensus 67 wt~~~~ 72 (78)
.|+...
T Consensus 464 aThr~~ 469 (498)
T KOG0685|consen 464 ATHRTF 469 (498)
T ss_pred cccccc
Confidence 888543
No 41
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=65.30 E-value=4.3 Score=22.27 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=14.9
Q ss_pred CCCCCCCEEEecccccccc
Q 034934 54 QKTPVKNFFLAGSYTKQYG 72 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~~~ 72 (78)
..++.|-|-|.|||..+-|
T Consensus 19 ~~~~~p~i~L~G~WL~~aG 37 (57)
T PF08845_consen 19 WYRPVPEIRLKGKWLEEAG 37 (57)
T ss_pred ccccCceEEEchhhhHHhC
Confidence 3456788999999998654
No 42
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=62.85 E-value=4.8 Score=30.55 Aligned_cols=17 Identities=35% Similarity=0.413 Sum_probs=15.1
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
..|.+||+|-|||-|..
T Consensus 475 g~TsvpGvFAAGD~T~~ 491 (520)
T COG3634 475 GETNVPGVFAAGDCTTV 491 (520)
T ss_pred CCcCCCceeecCcccCC
Confidence 57999999999999874
No 43
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=62.78 E-value=9.2 Score=23.67 Aligned_cols=27 Identities=26% Similarity=0.226 Sum_probs=20.8
Q ss_pred eecCCCCCCCCCCCCCCCCCCEEEecc
Q 034934 40 LCGEGPGKDPFRRDQKTPVKNFFLAGS 66 (78)
Q Consensus 40 t~~~~pg~~~~RP~~~T~~~nL~lAGD 66 (78)
+..-.||.-..|+-.-+++..||+.||
T Consensus 6 S~~ltpG~v~~r~l~~pg~~p~FlIGd 32 (105)
T TIGR03765 6 SPRLTPGKVQRRPLNLPGLTPLFLIGD 32 (105)
T ss_pred cCCCCCCccccceecCCCCCceEEEeC
Confidence 344567777778777777888999998
No 44
>PRK10262 thioredoxin reductase; Provisional
Probab=61.97 E-value=4.8 Score=28.04 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=14.6
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|+.||+|.|||-+..
T Consensus 275 ~~t~~~~VyA~GD~~~~ 291 (321)
T PRK10262 275 TQTSIPGVFAAGDVMDH 291 (321)
T ss_pred cccCCCCEEECeeccCC
Confidence 57999999999998753
No 45
>PLN02852 ferredoxin-NADP+ reductase
Probab=60.11 E-value=7.5 Score=29.68 Aligned_cols=18 Identities=11% Similarity=0.370 Sum_probs=14.7
Q ss_pred CCCCCCEEEecccccccccC
Q 034934 55 KTPVKNFFLAGSYTKQYGRS 74 (78)
Q Consensus 55 ~T~~~nL~lAGDwt~~~~~~ 74 (78)
.|++||+|.|||-.. |++
T Consensus 383 ~T~ipGvyAaGDi~~--Gp~ 400 (491)
T PLN02852 383 ADTEPGLYVVGWLKR--GPT 400 (491)
T ss_pred ccCCCCEEEeeeEec--CCC
Confidence 488999999999875 554
No 46
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=58.08 E-value=7.6 Score=26.11 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=13.4
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 261 ~~t~~~~vya~GD~~~ 276 (300)
T TIGR01292 261 MRTSVPGVFAAGDVRD 276 (300)
T ss_pred CccCCCCEEEeecccC
Confidence 4678999999999775
No 47
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=56.25 E-value=12 Score=24.22 Aligned_cols=28 Identities=29% Similarity=0.266 Sum_probs=22.6
Q ss_pred ceecCCCCCCCCCCCCCCCCCCEEEecc
Q 034934 39 SLCGEGPGKDPFRRDQKTPVKNFFLAGS 66 (78)
Q Consensus 39 At~~~~pg~~~~RP~~~T~~~nL~lAGD 66 (78)
.+..-.||.-..|+-..+++.-|||.||
T Consensus 43 ~S~~ltpG~V~~r~l~~pg~~plFlVGd 70 (142)
T PF11072_consen 43 RSPELTPGKVERRPLQLPGLQPLFLVGD 70 (142)
T ss_pred cCCCcCcCccccceecCCCCCCEEEEcC
Confidence 3556678887788888888888999998
No 48
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=53.34 E-value=9.3 Score=28.78 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=15.3
Q ss_pred CCCCCCCCCEEEecccccc
Q 034934 52 RDQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 52 P~~~T~~~nL~lAGDwt~~ 70 (78)
+..+|..||+|.|||-+..
T Consensus 470 ~~l~Ts~p~IyAaGDv~~~ 488 (517)
T PRK15317 470 ARGATSVPGVFAAGDCTTV 488 (517)
T ss_pred cCCCCCCCCEEECccccCC
Confidence 3456889999999998763
No 49
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=50.76 E-value=10 Score=28.32 Aligned_cols=18 Identities=17% Similarity=0.301 Sum_probs=14.8
Q ss_pred CCCCCCCCCEEEeccccc
Q 034934 52 RDQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 52 P~~~T~~~nL~lAGDwt~ 69 (78)
...+|++||||-||+-..
T Consensus 340 ~~~~t~I~GLyAaGE~a~ 357 (488)
T TIGR00551 340 DHGRTTVPGLYAIGEVAC 357 (488)
T ss_pred CCCcccCCCEEECccccc
Confidence 455689999999999864
No 50
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=49.49 E-value=12 Score=26.72 Aligned_cols=17 Identities=12% Similarity=0.290 Sum_probs=14.3
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|+.||+|.|||-...
T Consensus 261 l~ts~~~VyA~GD~a~~ 277 (377)
T PRK04965 261 LQTSAPDIYALGDCAEI 277 (377)
T ss_pred cccCCCCEEEeeecEeE
Confidence 46889999999998764
No 51
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=49.40 E-value=8.4 Score=26.24 Aligned_cols=50 Identities=24% Similarity=0.335 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCC--CCCCCCCCEEEecc
Q 034934 9 IRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRR--DQKTPVKNFFLAGS 66 (78)
Q Consensus 9 ~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP--~~~T~~~nL~lAGD 66 (78)
.+++++.+.+++|......+...+ .......|+. .| +.....+|||+|+-
T Consensus 288 ~~~l~~~~~~~~p~l~~~~v~~~~-----~g~r~~t~d~---~p~ig~~~~~~~l~~~~g 339 (358)
T PF01266_consen 288 IDELLERLARLLPGLGDAEVVRSW-----AGIRPFTPDG---RPIIGELPGSPNLYLAGG 339 (358)
T ss_dssp HHHHHHHHHHHSGGGGGSEEEEEE-----EEEEEEETTS---ECEEEEESSEEEEEEEEC
T ss_pred HHHhHHHHHHHHHHhhhccccccc-----cceeeeccCC---CeeeeecCCCCCEEEEEC
Confidence 568999999999986445544332 2222233432 34 22245889999963
No 52
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=48.40 E-value=5.4 Score=30.09 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=15.3
Q ss_pred CCCCEEEec---ccccccccCCccC
Q 034934 57 PVKNFFLAG---SYTKQYGRSNFVW 78 (78)
Q Consensus 57 ~~~nL~lAG---Dwt~~~~~~~~~~ 78 (78)
.+||||+|| ||+...|--||-|
T Consensus 367 ~vPGLyf~GEvlDv~g~tGGYN~q~ 391 (408)
T COG2081 367 KVPGLYFAGEVLDVTGWTGGYNFQW 391 (408)
T ss_pred cCCCcEEEEEEEEeccCCCcHHHHH
Confidence 579999999 4555556556644
No 53
>PRK08071 L-aspartate oxidase; Provisional
Probab=48.11 E-value=11 Score=28.43 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=14.0
Q ss_pred CCCCCCCCEEEeccccc
Q 034934 53 DQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~ 69 (78)
..+|++||||-||+-..
T Consensus 340 ~~~t~I~GLyAaGE~a~ 356 (510)
T PRK08071 340 DGETSIPGLYAIGEVAC 356 (510)
T ss_pred CCcccCCCeEEcccccc
Confidence 44589999999999764
No 54
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=47.96 E-value=14 Score=26.98 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=14.8
Q ss_pred CCCCCCCCEEEecccccc
Q 034934 53 DQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~~ 70 (78)
..+|+.||+|.|||-+..
T Consensus 279 ~~~Ts~~~IyA~GD~~~~ 296 (441)
T PRK08010 279 YLHTTADNIWAMGDVTGG 296 (441)
T ss_pred CcccCCCCEEEeeecCCC
Confidence 356889999999998764
No 55
>PRK13605 endoribonuclease SymE; Provisional
Probab=47.89 E-value=14 Score=23.17 Aligned_cols=20 Identities=15% Similarity=0.307 Sum_probs=15.8
Q ss_pred CCCCCCCCEEEecccccccc
Q 034934 53 DQKTPVKNFFLAGSYTKQYG 72 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~~~~ 72 (78)
+..+++|.|-|.|+|..+-|
T Consensus 32 ~~~~~~PaI~LkG~WLeeAG 51 (113)
T PRK13605 32 PDYSRIPAITLKGQWLEAAG 51 (113)
T ss_pred CCCCCCCceeECchhHHhhC
Confidence 34567899999999998654
No 56
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=47.67 E-value=11 Score=28.96 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=13.9
Q ss_pred CCCCCCCCEEEeccccc
Q 034934 53 DQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~ 69 (78)
..+|++||||-|||-..
T Consensus 366 ~~~t~i~GLyAaGe~~~ 382 (582)
T PRK09231 366 NCETRIKGLFAVGECSS 382 (582)
T ss_pred CCccccCCEEecccccc
Confidence 44699999999999653
No 57
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=47.65 E-value=13 Score=27.96 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=14.7
Q ss_pred CCCCCCCCEEEecccccc
Q 034934 53 DQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~~ 70 (78)
..+|..||+|.|||-+..
T Consensus 472 ~~~Ts~p~IyAaGDv~~~ 489 (515)
T TIGR03140 472 RGRTSVPGIFAAGDVTTV 489 (515)
T ss_pred CCCCCCCCEEEcccccCC
Confidence 356789999999998763
No 58
>PRK07804 L-aspartate oxidase; Provisional
Probab=47.59 E-value=12 Score=28.55 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=14.0
Q ss_pred CCCCCCCCEEEeccccc
Q 034934 53 DQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~ 69 (78)
..+|++||||.|||-+.
T Consensus 365 ~~~t~i~GLyAaGe~~~ 381 (541)
T PRK07804 365 YGRTSVPGLYAAGEVAC 381 (541)
T ss_pred CCcccCCCeEEcccccc
Confidence 34689999999999763
No 59
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=47.52 E-value=13 Score=28.23 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=13.9
Q ss_pred CCCHHHHHHHHHHHHHH
Q 034934 2 PLPNDEIIRRVAKQVLA 18 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~ 18 (78)
+.-|+|+.+.+...|++
T Consensus 210 p~~D~ei~~~~~~~l~~ 226 (454)
T COG1249 210 PGEDPEISKELTKQLEK 226 (454)
T ss_pred CcCCHHHHHHHHHHHHh
Confidence 34588999999999988
No 60
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=47.47 E-value=9 Score=29.82 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=13.6
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|+.+|+|.|||-+.
T Consensus 613 ~~Ts~~gVfAaGD~~~ 628 (654)
T PRK12769 613 YQTSNPKIFAGGDAVR 628 (654)
T ss_pred cccCCCCEEEcCCcCC
Confidence 3689999999999874
No 61
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=47.38 E-value=14 Score=27.26 Aligned_cols=17 Identities=18% Similarity=0.401 Sum_probs=14.4
Q ss_pred CCCCCCCCEEEeccccc
Q 034934 53 DQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~ 69 (78)
..+|..||+|.+||-+.
T Consensus 288 ~~~Ts~~~IyA~GD~~~ 304 (446)
T TIGR01424 288 YSRTSIPSIYAVGDVTD 304 (446)
T ss_pred CCccCCCCEEEeeccCC
Confidence 45688999999999875
No 62
>PLN02507 glutathione reductase
Probab=47.30 E-value=15 Score=27.78 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=15.0
Q ss_pred CCCCCCCCCEEEeccccc
Q 034934 52 RDQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 52 P~~~T~~~nL~lAGDwt~ 69 (78)
+..+|..||+|.+||-+.
T Consensus 324 ~~~~Ts~p~IyAiGDv~~ 341 (499)
T PLN02507 324 EYSRTNIPSIWAIGDVTN 341 (499)
T ss_pred CCCcCCCCCEEEeeEcCC
Confidence 345788999999999875
No 63
>PRK07846 mycothione reductase; Reviewed
Probab=47.20 E-value=13 Score=27.50 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=14.1
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|..||+|.|||-+..
T Consensus 288 ~~Ts~p~IyA~GD~~~~ 304 (451)
T PRK07846 288 QRTSAEGVFALGDVSSP 304 (451)
T ss_pred cccCCCCEEEEeecCCC
Confidence 45889999999998764
No 64
>PRK12831 putative oxidoreductase; Provisional
Probab=47.13 E-value=12 Score=27.87 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=13.9
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|+.||+|.|||-+.
T Consensus 422 ~~Ts~pgVfAaGD~~~ 437 (464)
T PRK12831 422 GLTSKEGVFAGGDAVT 437 (464)
T ss_pred CccCCCCEEEeCCCCC
Confidence 5788999999999864
No 65
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=46.72 E-value=15 Score=27.21 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=13.8
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|+.+|+|.|||-+.
T Consensus 411 ~~Ts~~~VfA~GD~~~ 426 (449)
T TIGR01316 411 QRTSIPGVFAGGDIIL 426 (449)
T ss_pred CccCCCCEEEecCCCC
Confidence 4688999999999874
No 66
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=46.66 E-value=14 Score=26.63 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=15.2
Q ss_pred CCCCCCCCCEEEecccccc
Q 034934 52 RDQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 52 P~~~T~~~nL~lAGDwt~~ 70 (78)
+..+|..+|+|.|||-+..
T Consensus 261 ~~~~ts~~~IyA~GD~a~~ 279 (396)
T PRK09754 261 EACRTCDPAIFAGGDVAIT 279 (396)
T ss_pred CCCccCCCCEEEccceEee
Confidence 3466889999999998753
No 67
>PRK09077 L-aspartate oxidase; Provisional
Probab=46.19 E-value=12 Score=28.42 Aligned_cols=18 Identities=11% Similarity=0.272 Sum_probs=14.4
Q ss_pred CCCCCCCCCEEEeccccc
Q 034934 52 RDQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 52 P~~~T~~~nL~lAGDwt~ 69 (78)
...+|++||||-||+-..
T Consensus 360 ~~~~t~I~GLyAaGE~a~ 377 (536)
T PRK09077 360 LHGRTDLDGLYAIGEVSY 377 (536)
T ss_pred CCCccccCCEEecccccc
Confidence 345689999999999753
No 68
>PRK06116 glutathione reductase; Validated
Probab=45.99 E-value=13 Score=27.31 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=13.6
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 291 ~~Ts~~~IyA~GD~~~ 306 (450)
T PRK06116 291 QNTNVPGIYAVGDVTG 306 (450)
T ss_pred CCcCCCCEEEEeecCC
Confidence 3688999999999874
No 69
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=45.16 E-value=38 Score=26.98 Aligned_cols=58 Identities=17% Similarity=0.310 Sum_probs=34.2
Q ss_pred HHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCC-CCCCEEEecccccccc
Q 034934 10 RRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKT-PVKNFFLAGSYTKQYG 72 (78)
Q Consensus 10 ~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T-~~~nL~lAGDwt~~~~ 72 (78)
..|..++-+-+|....+.+....+-- -|.+.+- ....|.-+| -++|||+||.---|.|
T Consensus 315 ~dVQ~~~irsipGlEna~i~rpgYAI----EYD~v~p-~qL~~tLEtK~I~GLf~AGQINGTtG 373 (621)
T COG0445 315 EDVQEQIIRSIPGLENAEILRPGYAI----EYDYVDP-RQLKPTLETKKIKGLFFAGQINGTTG 373 (621)
T ss_pred HHHHHHHHHhCcccccceeeccceee----eecccCh-hhcccchhhceecceEEcccccCCch
Confidence 34666777788876555553322211 2332221 126788887 6899999996554443
No 70
>PRK08401 L-aspartate oxidase; Provisional
Probab=44.55 E-value=13 Score=27.68 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.5
Q ss_pred CCCCCCCCEEEecccc
Q 034934 53 DQKTPVKNFFLAGSYT 68 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt 68 (78)
..+|++||||-||+-+
T Consensus 318 ~~~t~IpGLyAaGE~a 333 (466)
T PRK08401 318 FYRTGIKNLYAIGEAA 333 (466)
T ss_pred CCcccCCCEEECcccc
Confidence 4458999999999875
No 71
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=44.28 E-value=18 Score=26.81 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=13.7
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 291 ~~T~~p~IyAiGD~~~ 306 (450)
T TIGR01421 291 QNTNVPGIYALGDVVG 306 (450)
T ss_pred CcCCCCCEEEEEecCC
Confidence 5678999999999875
No 72
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=43.98 E-value=41 Score=26.02 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=13.1
Q ss_pred CCCCCCCEEEecccc
Q 034934 54 QKTPVKNFFLAGSYT 68 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt 68 (78)
.+|.++|||.|||-.
T Consensus 445 ~~t~i~gLy~aGdGA 459 (486)
T COG2509 445 LSTSIKGLYPAGDGA 459 (486)
T ss_pred ceeeecceEEccccc
Confidence 689999999999954
No 73
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=43.93 E-value=15 Score=27.28 Aligned_cols=17 Identities=12% Similarity=0.325 Sum_probs=14.1
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|..||+|.+||-+..
T Consensus 291 ~~Ts~~~IyA~GD~~~~ 307 (452)
T TIGR03452 291 GRTSARGVWALGDVSSP 307 (452)
T ss_pred cccCCCCEEEeecccCc
Confidence 45889999999998753
No 74
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=43.46 E-value=13 Score=27.95 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=13.6
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..+|+|.|||-+.
T Consensus 440 ~~Ts~~gVfAaGD~~~ 455 (485)
T TIGR01317 440 YSTSIPGVFAAGDCRR 455 (485)
T ss_pred ceECCCCEEEeeccCC
Confidence 4688999999999764
No 75
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=43.44 E-value=13 Score=28.68 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=14.5
Q ss_pred CCCCCCCCCEEEeccccc
Q 034934 52 RDQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 52 P~~~T~~~nL~lAGDwt~ 69 (78)
-..+|++||||-||+-..
T Consensus 364 ~~~~t~i~GLyAaGe~a~ 381 (580)
T TIGR01176 364 INCETRIKGLFAVGECAS 381 (580)
T ss_pred cCcccccCCeEeeecccc
Confidence 355699999999999753
No 76
>PRK13748 putative mercuric reductase; Provisional
Probab=43.40 E-value=14 Score=27.83 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=14.2
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|..||+|.+||-+..
T Consensus 391 ~~Ts~~~IyA~GD~~~~ 407 (561)
T PRK13748 391 MRTSVPHIYAAGDCTDQ 407 (561)
T ss_pred cccCCCCEEEeeecCCC
Confidence 46889999999998753
No 77
>PRK07512 L-aspartate oxidase; Provisional
Probab=43.25 E-value=13 Score=28.09 Aligned_cols=17 Identities=18% Similarity=0.440 Sum_probs=13.9
Q ss_pred CCCCCCCCCEEEecccc
Q 034934 52 RDQKTPVKNFFLAGSYT 68 (78)
Q Consensus 52 P~~~T~~~nL~lAGDwt 68 (78)
...+|++||||-||+-+
T Consensus 348 ~~~~t~I~GLyAaGE~a 364 (513)
T PRK07512 348 ADGRSSLPGLWAAGEVA 364 (513)
T ss_pred CCCccccCCEEeccccc
Confidence 34569999999999875
No 78
>PRK08275 putative oxidoreductase; Provisional
Probab=42.81 E-value=15 Score=27.96 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=13.5
Q ss_pred CCCCCCCCEEEecccc
Q 034934 53 DQKTPVKNFFLAGSYT 68 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt 68 (78)
..+|.++|||.|||-.
T Consensus 364 ~~~t~i~gl~a~Ge~~ 379 (554)
T PRK08275 364 KAETTVPGLYAAGDMA 379 (554)
T ss_pred CCccCCCCEEECcccC
Confidence 4579999999999954
No 79
>PRK14727 putative mercuric reductase; Provisional
Probab=42.71 E-value=16 Score=27.26 Aligned_cols=16 Identities=19% Similarity=0.432 Sum_probs=13.6
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 309 ~~Ts~~~IyA~GD~~~ 324 (479)
T PRK14727 309 METSAPDIYAAGDCSD 324 (479)
T ss_pred eecCCCCEEEeeecCC
Confidence 4688999999999774
No 80
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=42.62 E-value=15 Score=28.45 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=15.4
Q ss_pred CCCCCCCCCEEEecccccc
Q 034934 52 RDQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 52 P~~~T~~~nL~lAGDwt~~ 70 (78)
...+|.++|||-|||-...
T Consensus 389 ~~~~T~v~glyA~Ge~~~~ 407 (608)
T PRK06854 389 YNRMTTVEGLFAAGDVVGG 407 (608)
T ss_pred cccccCCCCEEEeeecCCC
Confidence 4557899999999997643
No 81
>PRK06175 L-aspartate oxidase; Provisional
Probab=42.57 E-value=16 Score=27.08 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=14.5
Q ss_pred CCCCCCCCCEEEeccccc
Q 034934 52 RDQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 52 P~~~T~~~nL~lAGDwt~ 69 (78)
...+|++||||-||.-+.
T Consensus 338 ~~~~t~i~gLYAaGE~a~ 355 (433)
T PRK06175 338 LNSKTSMKNLYAFGEVSC 355 (433)
T ss_pred CCccccCCCeEecccccc
Confidence 455599999999998753
No 82
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=42.24 E-value=15 Score=27.01 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=14.2
Q ss_pred CCCCCCCCEEEeccccc
Q 034934 53 DQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~ 69 (78)
..+|+.||+|.|||-+.
T Consensus 264 ~~~t~~~~IyA~GD~~~ 280 (438)
T PRK13512 264 KFETNVPNIYAIGDIIT 280 (438)
T ss_pred CcccCCCCEEEeeeeEE
Confidence 35688999999999875
No 83
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=41.95 E-value=15 Score=27.31 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=14.0
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|+.||+|.|||-+.
T Consensus 301 ~~Ts~~~IyA~GD~~~ 316 (466)
T PRK06115 301 HRTSVPGVWVIGDVTS 316 (466)
T ss_pred eecCCCCEEEeeecCC
Confidence 5688999999999875
No 84
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=41.58 E-value=13 Score=28.24 Aligned_cols=14 Identities=43% Similarity=0.506 Sum_probs=12.4
Q ss_pred CCCCCEEEeccccc
Q 034934 56 TPVKNFFLAGSYTK 69 (78)
Q Consensus 56 T~~~nL~lAGDwt~ 69 (78)
|++||||-||+-+.
T Consensus 357 t~I~GLyAaGe~a~ 370 (566)
T TIGR01812 357 TIVKGLFAAGECAC 370 (566)
T ss_pred cccCCeeecccccc
Confidence 99999999999653
No 85
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=41.44 E-value=15 Score=26.87 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=13.2
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 298 ~~t~~~~IyAiGD~~~ 313 (461)
T PRK05249 298 YQTAVPHIYAVGDVIG 313 (461)
T ss_pred cccCCCCEEEeeecCC
Confidence 3578999999999764
No 86
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=41.13 E-value=18 Score=26.79 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=14.7
Q ss_pred CCCCCCCCEEEecccccc
Q 034934 53 DQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~~ 70 (78)
..+|..||+|.+||-+..
T Consensus 299 ~~~Ts~~~IyA~GD~~~~ 316 (466)
T PRK07845 299 VSRTSVPGIYAAGDCTGV 316 (466)
T ss_pred CcccCCCCEEEEeeccCC
Confidence 356889999999998753
No 87
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=41.13 E-value=19 Score=26.43 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=14.5
Q ss_pred CCCCCCCCEEEecccccc
Q 034934 53 DQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~~ 70 (78)
..+|..||+|.+||-+..
T Consensus 293 ~~~ts~~~IyA~GD~~~~ 310 (460)
T PRK06292 293 HTQTSVPGIYAAGDVNGK 310 (460)
T ss_pred CcccCCCCEEEEEecCCC
Confidence 446789999999998753
No 88
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=40.90 E-value=14 Score=30.01 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=14.2
Q ss_pred CCCCCCCCCEEEeccccc
Q 034934 52 RDQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 52 P~~~T~~~nL~lAGDwt~ 69 (78)
...+|.+||||-|||-..
T Consensus 368 ~~~~T~v~GLfAaGE~a~ 385 (897)
T PRK13800 368 EHARTTVPGLYAAGDLAC 385 (897)
T ss_pred CCCcccCCCeEechhccC
Confidence 345789999999999543
No 89
>PRK13984 putative oxidoreductase; Provisional
Probab=40.88 E-value=18 Score=27.78 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=13.8
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|+.+|+|.|||-+.
T Consensus 564 ~~Ts~~gVfAaGD~~~ 579 (604)
T PRK13984 564 GQTSIPWLFAGGDIVH 579 (604)
T ss_pred CccCCCCEEEecCcCC
Confidence 4688999999999875
No 90
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=40.64 E-value=19 Score=26.16 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=14.8
Q ss_pred CCCCCCCCEEEecccccc
Q 034934 53 DQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~~ 70 (78)
..+|..+|+|.+||-+..
T Consensus 269 ~~~t~~~~IyA~GD~~~~ 286 (444)
T PRK09564 269 YGETSIENIYAAGDCATI 286 (444)
T ss_pred CcccCCCCEEEeeeEEEE
Confidence 346789999999999864
No 91
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=40.58 E-value=18 Score=25.63 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=13.0
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..+|+|.|||-+.
T Consensus 311 ~~t~~~~vyaiGD~~~ 326 (352)
T PRK12770 311 HMTSREGVFAAGDVVT 326 (352)
T ss_pred cccCCCCEEEEccccc
Confidence 3477899999999764
No 92
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=40.58 E-value=18 Score=26.73 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=14.0
Q ss_pred CCCCCCCCEEEeccccc
Q 034934 53 DQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~ 69 (78)
..+|..+|+|.+||-+.
T Consensus 412 ~~~Ts~~~VfA~GD~~~ 428 (457)
T PRK11749 412 TGRTSLPGVFAGGDIVT 428 (457)
T ss_pred CCccCCCCEEEeCCcCC
Confidence 35688999999999773
No 93
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=40.50 E-value=18 Score=26.90 Aligned_cols=16 Identities=25% Similarity=0.384 Sum_probs=13.8
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..+|+|.+||-+.
T Consensus 426 ~~Ts~~gVfa~GD~~~ 441 (471)
T PRK12810 426 YQTSNPKVFAAGDMRR 441 (471)
T ss_pred ccCCCCCEEEccccCC
Confidence 4588999999999875
No 94
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=40.25 E-value=44 Score=17.16 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 034934 6 DEIIRRVAKQVL 17 (78)
Q Consensus 6 eel~~~~~~~L~ 17 (78)
+||++++.++|.
T Consensus 25 ~EIIeA~~~eL~ 36 (40)
T PF08776_consen 25 EEIIEAIRQELS 36 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 344444444443
No 95
>PF11610 Ste5: Scaffold protein Ste5-Fus5 binding region; InterPro: IPR021651 This family of proteins represents the Fus5 binding domain of Ste5. Ste5 functions in the yeast mating pathway and is required for signalling through the mating response MAPK pathway. Ste5 has separate binding sites for each member of the MAPK cascade. This region of Ste5 allosterically activates autophosphroylation of Fus3, a mitogen-activated protein kinase. Auto-activated Fus3 has a negative regulatory role, and promotes Ste5 phosphorylation which leads to a decrease in pathway transcriptional output [].
Probab=40.21 E-value=21 Score=16.87 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=12.9
Q ss_pred eCCceecCCCCCCCCCCCCCCCCCCEEEec
Q 034934 36 IGQSLCGEGPGKDPFRRDQKTPVKNFFLAG 65 (78)
Q Consensus 36 e~~At~~~~pg~~~~RP~~~T~~~nL~lAG 65 (78)
|++..|+++|.. -|||.||.
T Consensus 4 erqtiysqap~l----------~pnlilaa 23 (30)
T PF11610_consen 4 ERQTIYSQAPNL----------NPNLILAA 23 (30)
T ss_pred chhhhhhhCCCC----------CcCeeEec
Confidence 456677777765 35677764
No 96
>cd04495 BRCA2DBD_OB3 BRCA2DBD_OB3: A subfamily of OB folds corresponding to the third OB fold (OB3) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD. BRCA2 participates in homologous recombination-mediated repair of double-strand DNA breaks. It stimulates the displacement of Replication protein A (RPA), the most abundant eukaryotic ssDNA binding protein. It also facilitates filament formation. Mutations that map throughout the BRCA2 protein are associated with breast cancer susceptibility. BRCA2 is a large nuclear protein and its most conserved region is the C-terminal BRCA2DBD. BRCA2DBD binds ssDNA in vitro, and is composed of five structural domains, three of which are OB folds (OB1, OB2, and OB3). BRCA2DBD OB2 and OB3 are arranged in tandem, and their mode of binding can be considered qualitatively similar to two OB folds of RPA1, DBD-A and DBD-B (the major DBDs of RPA).
Probab=40.20 E-value=16 Score=22.42 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=16.2
Q ss_pred CCCCCCCCCCCCEEEeccccc
Q 034934 49 PFRRDQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 49 ~~RP~~~T~~~nL~lAGDwt~ 69 (78)
+.||...+++|-+ .|||++.
T Consensus 59 QwR~~s~~~iPtl-~Age~t~ 78 (100)
T cd04495 59 QWRTESTSGVPTL-FAGEYST 78 (100)
T ss_pred eEeccccCCCcee-eeeccee
Confidence 4799888899966 4899876
No 97
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=39.82 E-value=21 Score=27.08 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=13.3
Q ss_pred CCCCCCCCEEEecccc
Q 034934 53 DQKTPVKNFFLAGSYT 68 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt 68 (78)
..+|++||||-||+-+
T Consensus 356 ~~~t~IpGLyAaGE~~ 371 (543)
T PRK06263 356 DCETNIPGLFACGEVA 371 (543)
T ss_pred CCcccCCCeEeccccc
Confidence 4459999999999865
No 98
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=39.81 E-value=18 Score=26.65 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=14.2
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|..+|+|.+||-+..
T Consensus 292 ~~Ts~~~VyAiGD~~~~ 308 (463)
T TIGR02053 292 LRTSNPGIYAAGDVTGG 308 (463)
T ss_pred ccCCCCCEEEeeecCCC
Confidence 46889999999998753
No 99
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=39.29 E-value=94 Score=22.21 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCC-CCCCCCEEEecc
Q 034934 5 NDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQ-KTPVKNFFLAGS 66 (78)
Q Consensus 5 ~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~-~T~~~nL~lAGD 66 (78)
+.+..+.+.+.+.+++|......+ .+.--.....+|.. .|-. +++.+|||+|.-
T Consensus 308 ~~~~~~~l~~~~~~~~P~l~~~~~-----~~~w~G~~~~t~D~---~PiIg~~~~~gl~~a~G 362 (407)
T TIGR01373 308 NLPTLEHVLAAILEMFPILSRVRM-----LRSWGGIVDVTPDG---SPIIGKTPLPNLYLNCG 362 (407)
T ss_pred CHHHHHHHHHHHHHhCCCcCCCCe-----EEEeccccccCCCC---CceeCCCCCCCeEEEec
Confidence 345677889999999997644443 33223334444443 4422 234689998853
No 100
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=39.26 E-value=24 Score=26.31 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=13.5
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..+|+|.+||-+.
T Consensus 427 ~~T~~~gVfa~GD~~~ 442 (467)
T TIGR01318 427 YQTTNPKIFAGGDAVR 442 (467)
T ss_pred ccCCCCCEEEECCcCC
Confidence 4678999999999874
No 101
>PLN02815 L-aspartate oxidase
Probab=39.09 E-value=18 Score=28.12 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=14.7
Q ss_pred CCCCCCCCCEEEeccccc
Q 034934 52 RDQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 52 P~~~T~~~nL~lAGDwt~ 69 (78)
...+|++||||-||+-..
T Consensus 384 ~~~~t~IpGLyAaGE~a~ 401 (594)
T PLN02815 384 LQGETNVQGLYAAGEVAC 401 (594)
T ss_pred CCCceecCCEEecccccc
Confidence 455689999999999764
No 102
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=38.47 E-value=17 Score=28.46 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=14.2
Q ss_pred CCCCCCCCCEEEeccccc
Q 034934 52 RDQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 52 P~~~T~~~nL~lAGDwt~ 69 (78)
...+|.+||||-|||-..
T Consensus 400 ~~~~T~i~gLyA~Ge~~~ 417 (614)
T TIGR02061 400 YNRMTTVEGLFTCGDGVG 417 (614)
T ss_pred cCCccccCCEEeceeccc
Confidence 445689999999999543
No 103
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=38.46 E-value=19 Score=27.74 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=12.1
Q ss_pred CCCCCEEEeccccc
Q 034934 56 TPVKNFFLAGSYTK 69 (78)
Q Consensus 56 T~~~nL~lAGDwt~ 69 (78)
|+|||||-||+-+.
T Consensus 360 t~IpGLYAaGE~a~ 373 (570)
T PRK05675 360 QIIPGLFAVGEVAC 373 (570)
T ss_pred CccCCeeecccccc
Confidence 58999999999764
No 104
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=38.09 E-value=23 Score=26.71 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=14.6
Q ss_pred CCCCCCCCEEEecccccc
Q 034934 53 DQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~~ 70 (78)
..+|..||+|.+||-+..
T Consensus 313 ~l~Ts~~~IyA~GDv~~~ 330 (486)
T TIGR01423 313 FSRTNVPNIYAIGDVTDR 330 (486)
T ss_pred CCcCCCCCEEEeeecCCC
Confidence 346889999999998753
No 105
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=37.42 E-value=19 Score=27.92 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=12.7
Q ss_pred CCCCCCEEEeccccc
Q 034934 55 KTPVKNFFLAGSYTK 69 (78)
Q Consensus 55 ~T~~~nL~lAGDwt~ 69 (78)
.|+|||||-||+-+.
T Consensus 382 ~t~I~GLyAaGE~a~ 396 (598)
T PRK09078 382 DAVVPGLMAVGEAAC 396 (598)
T ss_pred CCccCceeecccccc
Confidence 378999999999764
No 106
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=37.34 E-value=17 Score=28.30 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=12.5
Q ss_pred CCCCCCCEEEecccc
Q 034934 54 QKTPVKNFFLAGSYT 68 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt 68 (78)
..|++||||.||+-.
T Consensus 401 ~~t~IpGLYAaGE~a 415 (626)
T PRK07803 401 GAATVPGLFAAGECA 415 (626)
T ss_pred CeeecCCeeEccccc
Confidence 358999999999864
No 107
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=37.29 E-value=17 Score=28.12 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=13.4
Q ss_pred CCCCCCCCEEEecccc
Q 034934 53 DQKTPVKNFFLAGSYT 68 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt 68 (78)
...|++||||-||+-.
T Consensus 363 ~~~t~I~GLyAaGE~~ 378 (589)
T PRK08641 363 DQMTNIPGLFAAGECD 378 (589)
T ss_pred CCCeECCCEEECcccc
Confidence 3579999999999854
No 108
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=37.15 E-value=19 Score=27.58 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=12.7
Q ss_pred CCCCCCEEEeccccc
Q 034934 55 KTPVKNFFLAGSYTK 69 (78)
Q Consensus 55 ~T~~~nL~lAGDwt~ 69 (78)
.|++||||-||+-+.
T Consensus 350 ~t~IpGLyAaGE~a~ 364 (565)
T TIGR01816 350 DQIVPGLYAAGEAAC 364 (565)
T ss_pred CCccCCeeecccccc
Confidence 379999999999763
No 109
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=36.76 E-value=21 Score=26.35 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=13.6
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 299 ~~Ts~p~IyAiGD~~~ 314 (466)
T PRK07818 299 MRTNVPHIYAIGDVTA 314 (466)
T ss_pred cccCCCCEEEEeecCC
Confidence 4578999999999875
No 110
>PRK07395 L-aspartate oxidase; Provisional
Probab=36.62 E-value=20 Score=27.58 Aligned_cols=18 Identities=11% Similarity=0.364 Sum_probs=14.5
Q ss_pred CCCCCCCCCEEEeccccc
Q 034934 52 RDQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 52 P~~~T~~~nL~lAGDwt~ 69 (78)
...+|++||||-||+-+.
T Consensus 354 ~~~~t~I~GLyAaGE~a~ 371 (553)
T PRK07395 354 LNNQTSIPGLYAVGETAS 371 (553)
T ss_pred CCCcccCCCEEECccccc
Confidence 455689999999999653
No 111
>PRK14694 putative mercuric reductase; Provisional
Probab=36.48 E-value=21 Score=26.42 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=14.2
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|..||+|.+||-+..
T Consensus 298 ~~Ts~~~IyA~GD~~~~ 314 (468)
T PRK14694 298 LQTTVSGIYAAGDCTDQ 314 (468)
T ss_pred cccCCCCEEEEeecCCC
Confidence 46889999999998753
No 112
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=36.41 E-value=1.2e+02 Score=20.72 Aligned_cols=54 Identities=9% Similarity=0.114 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCC--CCCCCEEEecc
Q 034934 5 NDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQK--TPVKNFFLAGS 66 (78)
Q Consensus 5 ~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~--T~~~nL~lAGD 66 (78)
+++.++.+.+.+.+++|.....++. +..-.....++. ..|-.- -..+|+|+++-
T Consensus 258 ~~~~~~~l~~~~~~~~P~l~~~~~~-----~~~~g~r~~t~D---~~piig~~~~~~~~~~~~g 313 (337)
T TIGR02352 258 TLGGIKELLRDAYTILPALKEARLL-----ETWAGLRPGTPD---NLPYIGEHPEDRRLLIATG 313 (337)
T ss_pred CHHHHHHHHHHHHHhCCCcccCcHH-----HheecCCCCCCC---CCCEeCccCCCCCEEEEcc
Confidence 4566788999999999975434432 211122222332 344222 23578998874
No 113
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=36.37 E-value=25 Score=25.81 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=13.5
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 297 ~~t~~~~VyAiGD~~~ 312 (462)
T PRK06416 297 LRTNVPNIYAIGDIVG 312 (462)
T ss_pred CccCCCCEEEeeecCC
Confidence 4588999999999764
No 114
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=36.21 E-value=21 Score=26.82 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=13.7
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 306 ~~Ts~p~IyA~GDv~~ 321 (484)
T TIGR01438 306 EQTNVPYIYAVGDILE 321 (484)
T ss_pred cccCCCCEEEEEEecC
Confidence 5588999999999874
No 115
>PRK06370 mercuric reductase; Validated
Probab=36.07 E-value=22 Score=26.18 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=14.0
Q ss_pred CCCCCCCCEEEeccccc
Q 034934 53 DQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~ 69 (78)
..+|..||+|.+||-+.
T Consensus 296 ~l~t~~~~IyAiGD~~~ 312 (463)
T PRK06370 296 QLRTTNPGIYAAGDCNG 312 (463)
T ss_pred CCcCCCCCEEEeeecCC
Confidence 34688999999999764
No 116
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=35.76 E-value=22 Score=26.46 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=13.5
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 300 ~~t~~p~VyAiGDv~~ 315 (471)
T PRK06467 300 CRTNVPHIFAIGDIVG 315 (471)
T ss_pred cccCCCCEEEehhhcC
Confidence 3688999999999764
No 117
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=35.62 E-value=20 Score=27.75 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=12.3
Q ss_pred CCCCCEEEeccccc
Q 034934 56 TPVKNFFLAGSYTK 69 (78)
Q Consensus 56 T~~~nL~lAGDwt~ 69 (78)
|++||||-||+-+.
T Consensus 378 t~IpGLYAaGE~a~ 391 (588)
T PRK08958 378 VVVPGLFAVGEIAC 391 (588)
T ss_pred CccCCeEecccccc
Confidence 78999999999764
No 118
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=35.56 E-value=21 Score=27.22 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=13.1
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..+|+|.|||-+.
T Consensus 269 ~~Ts~p~IyAaGDv~~ 284 (555)
T TIGR03143 269 METNVPGVYAAGDLRP 284 (555)
T ss_pred cccCCCCEEEceeccC
Confidence 4578999999999653
No 119
>PLN02546 glutathione reductase
Probab=35.55 E-value=24 Score=27.28 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=14.4
Q ss_pred CCCCCCCCEEEeccccc
Q 034934 53 DQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~ 69 (78)
..+|..||+|.|||-+.
T Consensus 375 ~l~Ts~p~IYAaGDv~~ 391 (558)
T PLN02546 375 YSRTSVPSIWAVGDVTD 391 (558)
T ss_pred CceeCCCCEEEeeccCC
Confidence 45688999999999875
No 120
>PTZ00058 glutathione reductase; Provisional
Probab=35.42 E-value=22 Score=27.51 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=14.8
Q ss_pred CCCCCCCCEEEeccccc
Q 034934 53 DQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~ 69 (78)
..+|+.||+|.+||-+.
T Consensus 360 ~lqTs~p~IYA~GDv~~ 376 (561)
T PTZ00058 360 NQRTSVKHIYAVGDCCM 376 (561)
T ss_pred CCccCCCCEEEeEeccC
Confidence 35689999999999987
No 121
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=35.42 E-value=22 Score=27.88 Aligned_cols=14 Identities=21% Similarity=0.221 Sum_probs=12.2
Q ss_pred CCCCCEEEeccccc
Q 034934 56 TPVKNFFLAGSYTK 69 (78)
Q Consensus 56 T~~~nL~lAGDwt~ 69 (78)
|+|||||-||+-+.
T Consensus 421 t~IpGLYAaGE~a~ 434 (635)
T PLN00128 421 AVVPGLMAAGEAAC 434 (635)
T ss_pred CccCceEeeecccc
Confidence 78999999999763
No 122
>PRK07117 acyl carrier protein; Validated
Probab=35.31 E-value=45 Score=19.09 Aligned_cols=20 Identities=10% Similarity=0.419 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHHHHCCC
Q 034934 3 LPNDEIIRRVAKQVLALFPS 22 (78)
Q Consensus 3 ~~~eel~~~~~~~L~~~~P~ 22 (78)
|+++++.+++.+-+.+.+|+
T Consensus 1 M~~~ei~~~v~~ii~e~~p~ 20 (79)
T PRK07117 1 MDKQRIFDILVRHIREVLPD 20 (79)
T ss_pred CCHHHHHHHHHHHHHHHcCC
Confidence 57899999999999999984
No 123
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=34.80 E-value=21 Score=27.49 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=12.4
Q ss_pred CCCCCEEEeccccc
Q 034934 56 TPVKNFFLAGSYTK 69 (78)
Q Consensus 56 T~~~nL~lAGDwt~ 69 (78)
|++||||-||+-+.
T Consensus 373 t~IpGLyAaGE~a~ 386 (583)
T PRK08205 373 TVVPGLYAAGECAC 386 (583)
T ss_pred CCcCCeeecccccc
Confidence 78999999999764
No 124
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=34.78 E-value=27 Score=25.48 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=13.8
Q ss_pred CCCCCCCCEEEeccccc
Q 034934 53 DQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~ 69 (78)
..+|..+|+|.+||-+.
T Consensus 278 ~~~t~~~~IyaiGD~~~ 294 (438)
T PRK07251 278 YCQTSVPGVFAVGDVNG 294 (438)
T ss_pred CcccCCCCEEEeeecCC
Confidence 35688999999999664
No 125
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=34.73 E-value=22 Score=26.29 Aligned_cols=16 Identities=19% Similarity=0.330 Sum_probs=13.2
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 293 ~~ts~~~VyA~GD~~~ 308 (458)
T PRK06912 293 MQTNVPHIYACGDVIG 308 (458)
T ss_pred eecCCCCEEEEeecCC
Confidence 3477899999999774
No 126
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=34.58 E-value=22 Score=27.59 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=13.5
Q ss_pred CCCCCCCCCEEEeccc
Q 034934 52 RDQKTPVKNFFLAGSY 67 (78)
Q Consensus 52 P~~~T~~~nL~lAGDw 67 (78)
...+|.+||||.||+-
T Consensus 377 ~~~~t~i~gL~a~Ge~ 392 (603)
T TIGR01811 377 YDQMTNIPGLFAAGEC 392 (603)
T ss_pred CCCcccCCCEEECccc
Confidence 4557999999999995
No 127
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=34.34 E-value=22 Score=27.29 Aligned_cols=15 Identities=33% Similarity=0.476 Sum_probs=12.5
Q ss_pred CCCCCCEEEeccccc
Q 034934 55 KTPVKNFFLAGSYTK 69 (78)
Q Consensus 55 ~T~~~nL~lAGDwt~ 69 (78)
.|++||||-||+-+.
T Consensus 367 ~t~I~GLyAaGE~a~ 381 (575)
T PRK05945 367 DGLVEGFFAAGECAC 381 (575)
T ss_pred CCccCCeEeeecccc
Confidence 358999999999764
No 128
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=34.13 E-value=83 Score=22.35 Aligned_cols=19 Identities=5% Similarity=0.060 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHCCCCC
Q 034934 6 DEIIRRVAKQVLALFPSSQ 24 (78)
Q Consensus 6 eel~~~~~~~L~~~~P~~~ 24 (78)
.+..+.+.+.+.+++|...
T Consensus 255 ~~~~~~~~~~~~~~~P~l~ 273 (381)
T TIGR03197 255 EADHAENLERLAECLPALA 273 (381)
T ss_pred HHHHHHHHHHHHHhCcccc
Confidence 3446678888999999753
No 129
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=33.90 E-value=25 Score=26.15 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=13.6
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..+|+|.|||-+.
T Consensus 310 ~~Ts~~~VyA~GD~~~ 325 (475)
T PRK06327 310 CRTNVPNVYAIGDVVR 325 (475)
T ss_pred CccCCCCEEEEEeccC
Confidence 4688999999999875
No 130
>PTZ00052 thioredoxin reductase; Provisional
Probab=33.85 E-value=24 Score=26.56 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=13.0
Q ss_pred CCCCCCEEEeccccc
Q 034934 55 KTPVKNFFLAGSYTK 69 (78)
Q Consensus 55 ~T~~~nL~lAGDwt~ 69 (78)
+|..||+|.+||-+.
T Consensus 304 ~Ts~p~IyAiGDv~~ 318 (499)
T PTZ00052 304 CTNIPNIFAVGDVVE 318 (499)
T ss_pred cCCCCCEEEEEEecC
Confidence 688999999999764
No 131
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=33.48 E-value=55 Score=26.00 Aligned_cols=56 Identities=16% Similarity=0.251 Sum_probs=31.8
Q ss_pred HHHHHHHHHHCCCCCCCceeeEEEEEeC-CceecCCCCCCCCCCCCCC-CCCCEEEeccccccc
Q 034934 10 RRVAKQVLALFPSSQGLEVIWSSFVKIG-QSLCGEGPGKDPFRRDQKT-PVKNFFLAGSYTKQY 71 (78)
Q Consensus 10 ~~~~~~L~~~~P~~~~~~v~~~~v~~e~-~At~~~~pg~~~~RP~~~T-~~~nL~lAGDwt~~~ 71 (78)
+.+..+|-+.+|.....+++ +-- ...|.+.+- .+.-|..+| -++|||+||.---+.
T Consensus 344 ee~Q~~lir~IpGLEn~~i~-----qP~YgVeYDyv~p-rQlk~sLeTkkV~GLF~AGQINGTT 401 (679)
T KOG2311|consen 344 EELQLQLIRSIPGLENAEIL-----QPGYGVEYDYVDP-RQLKPSLETKKVQGLFFAGQINGTT 401 (679)
T ss_pred HHHHHHHHHhccCcccceee-----cccccceecccCh-HHcchhhhhhhccceEEeeeecCcc
Confidence 34566777888875444442 211 223333221 124566676 689999999655443
No 132
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=33.42 E-value=26 Score=25.43 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=13.7
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..+|+|.+||-+.
T Consensus 257 ~~t~~~~Vya~GD~~~ 272 (427)
T TIGR03385 257 FQTSVPNIYAAGDVAE 272 (427)
T ss_pred cEeCCCCEEEeeeeEE
Confidence 3578999999999986
No 133
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=33.29 E-value=16 Score=30.17 Aligned_cols=16 Identities=25% Similarity=0.559 Sum_probs=13.8
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|+.+|+|.|||-+.
T Consensus 588 ~~Ts~pgVFAaGD~~~ 603 (944)
T PRK12779 588 QRTSIKGVYSGGDAAR 603 (944)
T ss_pred CccCCCCEEEEEcCCC
Confidence 4689999999999874
No 134
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=33.14 E-value=33 Score=27.23 Aligned_cols=16 Identities=6% Similarity=0.414 Sum_probs=13.6
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..+|+|.|||-+.
T Consensus 711 ~~Ts~~gVfA~GD~~~ 726 (752)
T PRK12778 711 MQSSIPGIYAGGDIVR 726 (752)
T ss_pred CCCCCCCEEEeCCccC
Confidence 3688999999999874
No 135
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=32.84 E-value=25 Score=27.55 Aligned_cols=15 Identities=13% Similarity=0.408 Sum_probs=12.8
Q ss_pred CCCCCCCCEEEeccc
Q 034934 53 DQKTPVKNFFLAGSY 67 (78)
Q Consensus 53 ~~~T~~~nL~lAGDw 67 (78)
..+|.+||||-||+-
T Consensus 414 ~~~T~i~GLyAaGE~ 428 (640)
T PRK07573 414 NLMSTIPGLFVIGEA 428 (640)
T ss_pred CCccccCCEEECccc
Confidence 457999999999994
No 136
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=32.70 E-value=26 Score=27.27 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=13.5
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..+|+|.+||-+.
T Consensus 596 ~~Ts~~gVfA~GD~~~ 611 (639)
T PRK12809 596 TQTHLKKVFAGGDAVH 611 (639)
T ss_pred cccCCCCEEEcCCCCC
Confidence 3688999999999764
No 137
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=32.59 E-value=52 Score=18.80 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=12.1
Q ss_pred CCCCHHHHHHHHHHHHHHHC
Q 034934 1 MPLPNDEIIRRVAKQVLALF 20 (78)
Q Consensus 1 ~~~~~eel~~~~~~~L~~~~ 20 (78)
|.+|++| ++.++|+++.+
T Consensus 1 M~LSe~E--~r~L~eiEr~L 18 (82)
T PF11239_consen 1 MPLSEHE--QRRLEEIERQL 18 (82)
T ss_pred CCCCHHH--HHHHHHHHHHH
Confidence 5678877 45667776655
No 138
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=32.51 E-value=1.5e+02 Score=20.71 Aligned_cols=52 Identities=10% Similarity=-0.019 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCC-C-CCCCEEEeccc
Q 034934 6 DEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQK-T-PVKNFFLAGSY 67 (78)
Q Consensus 6 eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~-T-~~~nL~lAGDw 67 (78)
++..+.+++.+.+++|.... + .+.....+..+|. ..|-.. . ..+|||+|.-+
T Consensus 285 ~~~~~~l~~~~~~~~P~~~~--~-----~~~~~g~~~~t~D---~~P~ig~~~~~~gl~~~~G~ 338 (376)
T PRK11259 285 AEDGAELRPFLRNYLPGVGP--C-----LRGAACTYTNTPD---EHFIIDTLPGHPNVLVASGC 338 (376)
T ss_pred HHHHHHHHHHHHHHCCCCCc--c-----ccceEEecccCCC---CCceeecCCCCCCEEEEecc
Confidence 56788899999999996432 2 2212222334444 355332 2 37999988644
No 139
>PF08629 PDE8: PDE8 phosphodiesterase; InterPro: IPR013938 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This region is found at the N terminus of members of PDE8 phosphodiesterase family []. Phosphodiesterase 8 (PDE8) regulates chemotaxis of activated lymphocytes [].
Probab=32.34 E-value=38 Score=18.19 Aligned_cols=15 Identities=13% Similarity=0.410 Sum_probs=11.7
Q ss_pred CCCCCCCEEEecccc
Q 034934 54 QKTPVKNFFLAGSYT 68 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt 68 (78)
..+|++|||+-.|-.
T Consensus 36 ~~~pl~GLFiktdaa 50 (52)
T PF08629_consen 36 PAAPLPGLFIKTDAA 50 (52)
T ss_pred CCCCccceEEecccc
Confidence 567999999977643
No 140
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=31.64 E-value=31 Score=27.01 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=13.5
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|+.+|+|.+||-+.
T Consensus 462 ~~Ts~pgVfA~GDv~~ 477 (652)
T PRK12814 462 LQTSVAGVFAGGDCVT 477 (652)
T ss_pred CcCCCCCEEEcCCcCC
Confidence 4688999999999764
No 141
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=31.35 E-value=29 Score=26.65 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=13.4
Q ss_pred CCCCC-CCCEEEeccccc
Q 034934 53 DQKTP-VKNFFLAGSYTK 69 (78)
Q Consensus 53 ~~~T~-~~nL~lAGDwt~ 69 (78)
..+|+ +||||-||+-..
T Consensus 354 ~~~t~~IpGLyAaGE~a~ 371 (566)
T PRK06452 354 DGRNPDIVGLFSAGEAAC 371 (566)
T ss_pred CCCcCCcCCeEecccccc
Confidence 34575 999999999764
No 142
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=31.27 E-value=33 Score=20.91 Aligned_cols=14 Identities=29% Similarity=0.705 Sum_probs=11.9
Q ss_pred CCCCCCEEEecccc
Q 034934 55 KTPVKNFFLAGSYT 68 (78)
Q Consensus 55 ~T~~~nL~lAGDwt 68 (78)
.+.+|++|+.|..+
T Consensus 65 ~~tvP~vFI~Gk~i 78 (104)
T KOG1752|consen 65 QRTVPNVFIGGKFI 78 (104)
T ss_pred CCCCCEEEECCEEE
Confidence 45899999999877
No 143
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=30.76 E-value=13 Score=26.67 Aligned_cols=14 Identities=21% Similarity=0.546 Sum_probs=11.0
Q ss_pred CCCCCCEEEecccc
Q 034934 55 KTPVKNFFLAGSYT 68 (78)
Q Consensus 55 ~T~~~nL~lAGDwt 68 (78)
-+||||||.||+-+
T Consensus 389 g~pIpGLyAaGe~~ 402 (417)
T PF00890_consen 389 GQPIPGLYAAGEAA 402 (417)
T ss_dssp CEEEEEEEE-SCCE
T ss_pred CCEeCCEEEEEccc
Confidence 34899999999877
No 144
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=30.68 E-value=24 Score=27.47 Aligned_cols=15 Identities=20% Similarity=0.197 Sum_probs=12.4
Q ss_pred CCCCCCEEEeccccc
Q 034934 55 KTPVKNFFLAGSYTK 69 (78)
Q Consensus 55 ~T~~~nL~lAGDwt~ 69 (78)
.|++||||.||+-+.
T Consensus 399 ~t~I~GLyAaGE~a~ 413 (617)
T PTZ00139 399 DKIVPGLLAAGEAAC 413 (617)
T ss_pred CCccCCceecccccc
Confidence 468999999999763
No 145
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=30.49 E-value=30 Score=25.30 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=12.8
Q ss_pred CCCCCCEEEeccccc
Q 034934 55 KTPVKNFFLAGSYTK 69 (78)
Q Consensus 55 ~T~~~nL~lAGDwt~ 69 (78)
+|..+|+|.+||-+.
T Consensus 296 ~t~~~~IyaiGD~~~ 310 (461)
T TIGR01350 296 RTNVPGIYAIGDVIG 310 (461)
T ss_pred ccCCCCEEEeeecCC
Confidence 577899999999764
No 146
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=30.04 E-value=2e+02 Score=20.14 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCC--CCCCCCCCEEEeccc
Q 034934 5 NDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRR--DQKTPVKNFFLAGSY 67 (78)
Q Consensus 5 ~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP--~~~T~~~nL~lAGDw 67 (78)
+++.++.+++.+.+.+|......+ +.......++|.. .| +....++|||+|.-+
T Consensus 283 ~~~~~~~l~~~~~~~~P~l~~~~~------~~~~~~~~~t~D~---~piIg~~p~~~~l~va~G~ 338 (380)
T TIGR01377 283 DIEDVQILRKFVRDHLPGLNGEPK------KGEVCMYTNTPDE---HFVIDLHPKYDNVVIGAGF 338 (380)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCcc------eeeEEEeccCCCC---CeeeecCCCCCCEEEEecC
Confidence 345678888999999998642222 1122334455543 44 333457899988543
No 147
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=29.92 E-value=34 Score=26.10 Aligned_cols=16 Identities=19% Similarity=0.189 Sum_probs=13.4
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
..|..+|+|.+||-+.
T Consensus 405 ~~ts~~~Vfa~GD~~~ 420 (564)
T PRK12771 405 MMTGRPGVFAGGDMVP 420 (564)
T ss_pred ccCCCCCEEeccCcCC
Confidence 4578999999999764
No 148
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=29.59 E-value=23 Score=25.79 Aligned_cols=13 Identities=38% Similarity=0.743 Sum_probs=11.2
Q ss_pred CCCCCEEEecccc
Q 034934 56 TPVKNFFLAGSYT 68 (78)
Q Consensus 56 T~~~nL~lAGDwt 68 (78)
++|||||.||.-+
T Consensus 401 ~~IpGLyAaG~~~ 413 (439)
T TIGR01813 401 KPIPGLFAAGEVT 413 (439)
T ss_pred CEecccEEeeecc
Confidence 6899999999754
No 149
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=29.33 E-value=26 Score=26.85 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=11.1
Q ss_pred CCCCEEEeccccc
Q 034934 57 PVKNFFLAGSYTK 69 (78)
Q Consensus 57 ~~~nL~lAGDwt~ 69 (78)
++||||-||+-+.
T Consensus 370 ~I~GLyAaGE~a~ 382 (577)
T PRK06069 370 WVRGLWAAGEAAA 382 (577)
T ss_pred EeCCeEecccccc
Confidence 3999999999764
No 150
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=29.26 E-value=34 Score=24.12 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=12.9
Q ss_pred CC-CCCCEEEeccccc
Q 034934 55 KT-PVKNFFLAGSYTK 69 (78)
Q Consensus 55 ~T-~~~nL~lAGDwt~ 69 (78)
+| ..+|+|.+||-+.
T Consensus 267 ~~~~~~~Iya~GD~~~ 282 (364)
T TIGR03169 267 QSLSHPHVFAAGDCAV 282 (364)
T ss_pred ccCCCCCEEEeeeeee
Confidence 44 8999999999885
No 151
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=29.26 E-value=37 Score=28.26 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=13.9
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|+++|+|.|||-+.
T Consensus 716 ~~Ts~pgVFAaGDv~~ 731 (1006)
T PRK12775 716 QSTNLPGVFAGGDIVT 731 (1006)
T ss_pred cCCCCCCEEEecCcCC
Confidence 4689999999999874
No 152
>PF14083 PGDYG: PGDYG protein
Probab=28.71 E-value=25 Score=21.50 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=10.0
Q ss_pred ecccccccccCCc
Q 034934 64 AGSYTKQYGRSNF 76 (78)
Q Consensus 64 AGDwt~~~~~~~~ 76 (78)
||||+-|+.+..+
T Consensus 77 agDw~mqyapGdy 89 (102)
T PF14083_consen 77 AGDWLMQYAPGDY 89 (102)
T ss_pred CcceEEEeCCCCc
Confidence 7899998887543
No 153
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=28.57 E-value=37 Score=24.83 Aligned_cols=15 Identities=27% Similarity=0.583 Sum_probs=12.8
Q ss_pred CCCCCEEEecccccc
Q 034934 56 TPVKNFFLAGSYTKQ 70 (78)
Q Consensus 56 T~~~nL~lAGDwt~~ 70 (78)
|..+|+|.+||-+..
T Consensus 306 ~~~~~IfAiGD~a~~ 320 (424)
T PTZ00318 306 KPIPNVFALGDCAAN 320 (424)
T ss_pred CCCCCEEEEeccccC
Confidence 688999999998763
No 154
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=27.92 E-value=20 Score=26.11 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=11.0
Q ss_pred CCCCEEEeccccc
Q 034934 57 PVKNFFLAGSYTK 69 (78)
Q Consensus 57 ~~~nL~lAGDwt~ 69 (78)
-+||||+||.-.+
T Consensus 366 ~~~gly~~GE~lD 378 (400)
T TIGR00275 366 LVPGLYFAGEVLD 378 (400)
T ss_pred CCCCeEEEEEEEe
Confidence 5799999997766
No 155
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=27.62 E-value=20 Score=26.55 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=13.3
Q ss_pred CCCCC-CCCCEEEeccccc
Q 034934 52 RDQKT-PVKNFFLAGSYTK 69 (78)
Q Consensus 52 P~~~T-~~~nL~lAGDwt~ 69 (78)
|...+ -+||||+||.-.+
T Consensus 329 ~~~~Sk~~pgLYf~GEvLD 347 (376)
T TIGR03862 329 ESLMLKARPGVFCAGEMLD 347 (376)
T ss_pred hhhhcccCCCeEEEEEEEe
Confidence 44444 5899999997766
No 156
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=26.99 E-value=46 Score=24.88 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=16.9
Q ss_pred CCCC---CCCCCCCCEEEecccccccc
Q 034934 49 PFRR---DQKTPVKNFFLAGSYTKQYG 72 (78)
Q Consensus 49 ~~RP---~~~T~~~nL~lAGDwt~~~~ 72 (78)
..|| ...+.++|||.||+-+..+-
T Consensus 368 ~~~p~~~~g~~~~~nl~a~G~vl~g~d 394 (422)
T PRK05329 368 TLRPLDSQGGPVIENLYAAGAVLGGYD 394 (422)
T ss_pred CcCcccCCCCeeccceEEeeehhcCCc
Confidence 3577 23356999999998776543
No 157
>PF14230 DUF4333: Domain of unknown function (DUF4333)
Probab=26.98 E-value=73 Score=18.19 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHHHHHCCC
Q 034934 3 LPNDEIIRRVAKQVLALFPS 22 (78)
Q Consensus 3 ~~~eel~~~~~~~L~~~~P~ 22 (78)
++.+++.+.+.+.|.+.|..
T Consensus 20 ld~~~ve~~v~~~L~~~~G~ 39 (80)
T PF14230_consen 20 LDKAQVEQGVAQVLTEQYGV 39 (80)
T ss_pred ECHHHHHHHHHHHHHHhhCC
Confidence 57889999999999999864
No 158
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=26.80 E-value=1.4e+02 Score=23.35 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=12.8
Q ss_pred CCCEEEeccccccccc
Q 034934 58 VKNFFLAGSYTKQYGR 73 (78)
Q Consensus 58 ~~nL~lAGDwt~~~~~ 73 (78)
..++|||||-.+++.|
T Consensus 339 ~gRVfLaGDAAH~hsP 354 (634)
T PRK08294 339 LPRVFIAGDACHTHSA 354 (634)
T ss_pred cCCEEEEecCccCCCC
Confidence 3699999998886655
No 159
>PF13769 Virulence_fact: Virulence factor
Probab=26.43 E-value=89 Score=18.55 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHHHHCCC
Q 034934 4 PNDEIIRRVAKQVLALFPS 22 (78)
Q Consensus 4 ~~eel~~~~~~~L~~~~P~ 22 (78)
+.+|+.+.+.++|...||+
T Consensus 61 d~~eia~~v~~eleA~Y~~ 79 (86)
T PF13769_consen 61 DLEEIAEEVAEELEAAYPQ 79 (86)
T ss_pred CHHHHHHHHHHHHHhhCCH
Confidence 4678999999999999986
No 160
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=26.33 E-value=33 Score=26.56 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=11.9
Q ss_pred CCCCCEEEeccccc
Q 034934 56 TPVKNFFLAGSYTK 69 (78)
Q Consensus 56 T~~~nL~lAGDwt~ 69 (78)
+++||||-||+-+.
T Consensus 381 ~~IpGLyAaGE~a~ 394 (591)
T PRK07057 381 EPVNGFYAIGECSC 394 (591)
T ss_pred CeeCCeEeCccccc
Confidence 47999999998764
No 161
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=25.77 E-value=38 Score=24.73 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=11.3
Q ss_pred CCCCCCEEEecccc
Q 034934 55 KTPVKNFFLAGSYT 68 (78)
Q Consensus 55 ~T~~~nL~lAGDwt 68 (78)
..||||||-||.-+
T Consensus 384 g~~I~GLYAaG~~~ 397 (432)
T TIGR02485 384 AVAPDNLFAAGTNM 397 (432)
T ss_pred CCCCCCeeeccccc
Confidence 45899999999654
No 162
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=25.54 E-value=25 Score=25.19 Aligned_cols=61 Identities=13% Similarity=0.055 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecccccc
Q 034934 4 PNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 4 ~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~~~nL~lAGDwt~~ 70 (78)
++.++.+-+.+.+.-.+|+.-...... .+.+ . .+...|.+ +.|......+|+.+.||-...
T Consensus 81 ~~g~l~~yl~~~v~P~LP~~lr~~f~~--al~~-~-rirsMPn~--~lp~~~~~~~G~vllGDA~nm 141 (276)
T PF08491_consen 81 SNGELKEYLREVVAPQLPEELRPSFEK--ALED-G-RIRSMPNS--FLPASPNWKPGVVLLGDAANM 141 (276)
T ss_pred cchHHHHHHHHHHHhhchHHHHHHHHH--Hhcc-C-Ccceeccc--ccCCCCCCCCCEEEEehhhcC
Confidence 345777777777777776410000000 0111 1 34456665 577777777999999997653
No 163
>PF08178 GnsAB: GnsA/GnsB family; InterPro: IPR012563 This family consists of the GnsA/GnsB family. GnsA and GnsB are multicopy suppressors of the secG null mutation. These proteins participate in the synthesis of phospholipids, suggesting the functional relationship between SecG and membrane phospholipids. Over expression of gnsA and gnsB causes a remarkable increase in the unsaturated fatty acid content. However, the gnsA-gnsB double null mutant exhibits no effect. Both proteins are predicted to possess a helix-turn-helix structure [].
Probab=25.41 E-value=86 Score=17.12 Aligned_cols=18 Identities=17% Similarity=0.425 Sum_probs=14.1
Q ss_pred CCHHHHHHHHHHHHHHHC
Q 034934 3 LPNDEIIRRVAKQVLALF 20 (78)
Q Consensus 3 ~~~eel~~~~~~~L~~~~ 20 (78)
|++|+|...+-+++..++
T Consensus 1 M~~e~lkkk~EeeI~~lI 18 (54)
T PF08178_consen 1 MNIEELKKKAEEEISALI 18 (54)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 578888888888877776
No 164
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=25.10 E-value=37 Score=24.93 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=11.1
Q ss_pred CCCCCEEEecccc
Q 034934 56 TPVKNFFLAGSYT 68 (78)
Q Consensus 56 T~~~nL~lAGDwt 68 (78)
++|||||-||.-+
T Consensus 416 ~~I~GLYAaGe~~ 428 (466)
T PRK08274 416 RPSPNLFAAGEMM 428 (466)
T ss_pred CCCCCceeccccc
Confidence 4899999999754
No 165
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=24.93 E-value=1e+02 Score=17.18 Aligned_cols=18 Identities=11% Similarity=0.335 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHCCC
Q 034934 5 NDEIIRRVAKQVLALFPS 22 (78)
Q Consensus 5 ~eel~~~~~~~L~~~~P~ 22 (78)
-+.|.+.+.++|.+.||+
T Consensus 6 ~~AL~~EL~kRl~~~yPd 23 (65)
T PF06183_consen 6 LEALESELTKRLHRQYPD 23 (65)
T ss_dssp HHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHHHHHHCCC
Confidence 356788899999999997
No 166
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=24.90 E-value=2.4e+02 Score=20.83 Aligned_cols=54 Identities=9% Similarity=-0.012 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCC--CCCCCCEEEeccc
Q 034934 6 DEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQ--KTPVKNFFLAGSY 67 (78)
Q Consensus 6 eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~--~T~~~nL~lAGDw 67 (78)
....+.+.+.+.++||.....++.. .-......+|. ..|-. ....+|||+|.-|
T Consensus 317 ~~~~~~l~~~~~~~fP~L~~~~i~~-----~W~G~~~~t~D---~~P~iG~~~~~~gl~~a~G~ 372 (460)
T TIGR03329 317 SPYEALLTRSLRKFFPALAEVPIAA-----SWNGPSDRSVT---GLPFFGRLNGQPNVFYGFGY 372 (460)
T ss_pred hHHHHHHHHHHHHhCCCcCCCeeeE-----EEeceeCCCCC---CCceeeeecCCCCEEEEeCc
Confidence 3456778888999999754444432 22333334444 24421 1246899998533
No 167
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=24.83 E-value=33 Score=26.10 Aligned_cols=14 Identities=29% Similarity=0.574 Sum_probs=11.9
Q ss_pred CCCCCCEEEecccc
Q 034934 55 KTPVKNFFLAGSYT 68 (78)
Q Consensus 55 ~T~~~nL~lAGDwt 68 (78)
-+||||||.||.-+
T Consensus 501 g~pIpGLYAaG~~~ 514 (549)
T PRK12834 501 GTPLPGLYAAGEAA 514 (549)
T ss_pred CCEeCCeeeceecc
Confidence 46899999999776
No 168
>PRK07121 hypothetical protein; Validated
Probab=24.18 E-value=61 Score=24.18 Aligned_cols=14 Identities=21% Similarity=0.591 Sum_probs=11.4
Q ss_pred CCCCCCEEEecccc
Q 034934 55 KTPVKNFFLAGSYT 68 (78)
Q Consensus 55 ~T~~~nL~lAGDwt 68 (78)
-.+|||||-||.-.
T Consensus 446 g~pI~GLYAaG~~~ 459 (492)
T PRK07121 446 GAPIPGLYAAGRCA 459 (492)
T ss_pred CCCcCceEeccccc
Confidence 35899999999654
No 169
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=24.13 E-value=53 Score=25.88 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=13.9
Q ss_pred CCCCC-CCCCEEEeccccc
Q 034934 52 RDQKT-PVKNFFLAGSYTK 69 (78)
Q Consensus 52 P~~~T-~~~nL~lAGDwt~ 69 (78)
...+| ++||||-||+-..
T Consensus 379 ~~~~t~~I~GLyAaGE~a~ 397 (657)
T PRK08626 379 PTGESYGLKGLFSAGEAAC 397 (657)
T ss_pred CCCCCcccCCEEecccccc
Confidence 44566 6999999999753
No 170
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=22.71 E-value=52 Score=22.42 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=13.1
Q ss_pred CCEEEecccccccccC
Q 034934 59 KNFFLAGSYTKQYGRS 74 (78)
Q Consensus 59 ~nL~lAGDwt~~~~~~ 74 (78)
..|++.||+++-.+.|
T Consensus 38 d~li~lGDliDRGp~S 53 (245)
T PRK13625 38 RKLAFVGDLTDRGPHS 53 (245)
T ss_pred CEEEEECcccCCCcCh
Confidence 4599999999977655
No 171
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=22.60 E-value=2.8e+02 Score=19.35 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCC-CCCCCCCCCCC--CCCCCEEEecccc
Q 034934 8 IIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEG-PGKDPFRRDQK--TPVKNFFLAGSYT 68 (78)
Q Consensus 8 l~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~-pg~~~~RP~~~--T~~~nL~lAGDwt 68 (78)
....+.+.+.+++|......+.... ....... |.. .|-.- .+.+|||+|.-+-
T Consensus 291 ~~~~l~~~~~~~~P~l~~~~~~~~w-----~g~~~~t~pd~---~P~iG~~~~~~~l~~a~G~~ 346 (387)
T COG0665 291 VIAELLRVARALLPGLADAGIEAAW-----AGLRPPTTPDG---LPVIGRAAPLPNLYVATGHG 346 (387)
T ss_pred hHHHHHHHHHHhCccccccccceee-----eccccCCCCCC---CceeCCCCCCCCEEEEecCC
Confidence 4568889999999976444443311 1111112 432 44222 3389999997553
No 172
>PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A.
Probab=22.22 E-value=24 Score=25.90 Aligned_cols=18 Identities=28% Similarity=0.515 Sum_probs=15.8
Q ss_pred CEEEecccccccccCCcc
Q 034934 60 NFFLAGSYTKQYGRSNFV 77 (78)
Q Consensus 60 nL~lAGDwt~~~~~~~~~ 77 (78)
++++|||-..|.-.|||.
T Consensus 74 d~~~aGDLlnQ~i~s~f~ 91 (329)
T PF07451_consen 74 DYLFAGDLLNQIISSSFA 91 (329)
T ss_dssp SEEEEEETTCCCCHHHHH
T ss_pred eEEEehhhhhhhHHHHHH
Confidence 489999999999998884
No 173
>PF15031 DUF4528: Domain of unknown function (DUF4528)
Probab=21.95 E-value=38 Score=21.48 Aligned_cols=10 Identities=50% Similarity=1.169 Sum_probs=7.8
Q ss_pred cccccCCccC
Q 034934 69 KQYGRSNFVW 78 (78)
Q Consensus 69 ~~~~~~~~~~ 78 (78)
+|.|.|+|-|
T Consensus 33 DqfG~ShFNW 42 (126)
T PF15031_consen 33 DQFGLSHFNW 42 (126)
T ss_pred ccccccccCc
Confidence 4788888877
No 174
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=21.93 E-value=53 Score=24.29 Aligned_cols=16 Identities=13% Similarity=0.239 Sum_probs=13.2
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..+|+|.+||-+.
T Consensus 306 l~ts~~~IyAiGD~~~ 321 (472)
T PRK05976 306 CQTKERHIYAIGDVIG 321 (472)
T ss_pred cccCCCCEEEeeecCC
Confidence 3577899999999874
No 175
>PF10921 DUF2710: Protein of unknown function (DUF2710); InterPro: IPR024296 This family of uncharacterised proteins appears to be restricted to Mycobacteriaceae.
Probab=21.80 E-value=1.1e+02 Score=18.87 Aligned_cols=19 Identities=11% Similarity=0.326 Sum_probs=15.5
Q ss_pred CCCHHHHHHHHHHHHHHHC
Q 034934 2 PLPNDEIIRRVAKQVLALF 20 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~ 20 (78)
+++|.+|++.++++|.+.-
T Consensus 13 ~lsDkdLvesVlr~lseaa 31 (109)
T PF10921_consen 13 QLSDKDLVESVLRELSEAA 31 (109)
T ss_pred ccchhhHHHHHHHHHHHHH
Confidence 4788999999999887654
No 176
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=21.51 E-value=40 Score=25.41 Aligned_cols=15 Identities=27% Similarity=0.600 Sum_probs=12.1
Q ss_pred CCCCCCEEEeccccc
Q 034934 55 KTPVKNFFLAGSYTK 69 (78)
Q Consensus 55 ~T~~~nL~lAGDwt~ 69 (78)
-+||||||-||.-+.
T Consensus 458 g~pI~GLYAaGe~~g 472 (506)
T PRK06481 458 GSPITGLYAAGEVTG 472 (506)
T ss_pred CCEeCCeeeceeccc
Confidence 379999999997543
No 177
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=21.41 E-value=1.8e+02 Score=16.68 Aligned_cols=20 Identities=10% Similarity=0.363 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHCCCCC
Q 034934 5 NDEIIRRVAKQVLALFPSSQ 24 (78)
Q Consensus 5 ~eel~~~~~~~L~~~~P~~~ 24 (78)
=.+|.+++.+.-+++||...
T Consensus 15 l~~L~~eI~~~f~kLYP~~~ 34 (73)
T PF10407_consen 15 LSQLKEEIEERFKKLYPNEP 34 (73)
T ss_pred HHHHHHHHHHHHHHHCCCCC
Confidence 45788889999999999753
No 178
>smart00279 HhH2 Helix-hairpin-helix class 2 (Pol1 family) motifs.
Probab=21.34 E-value=33 Score=16.85 Aligned_cols=9 Identities=33% Similarity=0.778 Sum_probs=6.4
Q ss_pred Eeccccccc
Q 034934 63 LAGSYTKQY 71 (78)
Q Consensus 63 lAGDwt~~~ 71 (78)
|+||+++.+
T Consensus 10 L~GD~~dni 18 (36)
T smart00279 10 LVGDYSDNI 18 (36)
T ss_pred HhCcCCCCC
Confidence 678888843
No 179
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=21.26 E-value=2.1e+02 Score=20.34 Aligned_cols=54 Identities=20% Similarity=0.075 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCC-CCCCCCEEEeccc
Q 034934 6 DEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQ-KTPVKNFFLAGSY 67 (78)
Q Consensus 6 eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~-~T~~~nL~lAGDw 67 (78)
++..+.+.+.+.+++|......+... .-.....+|. ..|-. ..+.+|||+|.-+
T Consensus 326 ~~~~~~l~~~~~~~~P~l~~~~~~~~-----w~G~r~~t~D---~~PiIG~~~~~gl~~a~G~ 380 (416)
T PRK00711 326 PARRETLEMVVRDLFPGGGDLSQATF-----WTGLRPMTPD---GTPIVGATRYKNLWLNTGH 380 (416)
T ss_pred HHHHHHHHHHHHHHCCCcccccccce-----eeccCCCCCC---CCCEeCCcCCCCEEEecCC
Confidence 44567778889999997543333221 1222223333 23311 1246899988644
No 180
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=21.22 E-value=43 Score=22.36 Aligned_cols=18 Identities=11% Similarity=0.004 Sum_probs=14.3
Q ss_pred CCCEEEecccccccccCC
Q 034934 58 VKNFFLAGSYTKQYGRSN 75 (78)
Q Consensus 58 ~~nL~lAGDwt~~~~~~~ 75 (78)
..-|++.||+++..+-|+
T Consensus 45 ~D~li~lGDlvDrGp~s~ 62 (218)
T PRK11439 45 RDLLISVGDLIDRGPQSL 62 (218)
T ss_pred cCEEEEcCcccCCCcCHH
Confidence 456999999999877664
No 181
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=21.13 E-value=57 Score=21.93 Aligned_cols=17 Identities=6% Similarity=0.124 Sum_probs=13.8
Q ss_pred CCEEEecccccccccCC
Q 034934 59 KNFFLAGSYTKQYGRSN 75 (78)
Q Consensus 59 ~nL~lAGDwt~~~~~~~ 75 (78)
.-|++.||+++..+.|.
T Consensus 35 d~lvflGD~IDRGp~S~ 51 (222)
T cd07413 35 RQVVFLGDLIDRGPEIR 51 (222)
T ss_pred CEEEEeCcccCCCCCHH
Confidence 36999999999877664
No 182
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=21.03 E-value=48 Score=25.44 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=11.4
Q ss_pred CCCCCCEEEecccc
Q 034934 55 KTPVKNFFLAGSYT 68 (78)
Q Consensus 55 ~T~~~nL~lAGDwt 68 (78)
-++|||||.||.-+
T Consensus 521 g~pIpGLYAaG~~~ 534 (574)
T PRK12842 521 GTPIAGLYAVGNDR 534 (574)
T ss_pred CCCcCCceeccccc
Confidence 46899999999644
No 183
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=20.92 E-value=57 Score=26.19 Aligned_cols=18 Identities=11% Similarity=0.279 Sum_probs=14.8
Q ss_pred CCCCCCCEEEeccccccc
Q 034934 54 QKTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~~ 71 (78)
.+|..||+|.+||-+...
T Consensus 260 ~~Ts~p~IyA~GD~a~~~ 277 (785)
T TIGR02374 260 MQTSDPDIYAVGECAEHN 277 (785)
T ss_pred cccCCCCEEEeeecceeC
Confidence 468899999999987643
No 184
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=20.78 E-value=65 Score=20.95 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=13.4
Q ss_pred CCCEEEecccccccccC
Q 034934 58 VKNFFLAGSYTKQYGRS 74 (78)
Q Consensus 58 ~~nL~lAGDwt~~~~~~ 74 (78)
-..|+++||+++..+.|
T Consensus 25 ~d~li~lGD~vdrg~~~ 41 (225)
T cd00144 25 NDKLIFLGDYVDRGPDS 41 (225)
T ss_pred CCEEEEECCEeCCCCCc
Confidence 35699999999976655
No 185
>PHA02239 putative protein phosphatase
Probab=20.60 E-value=69 Score=21.95 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=13.8
Q ss_pred CCCEEEecccccccccCC
Q 034934 58 VKNFFLAGSYTKQYGRSN 75 (78)
Q Consensus 58 ~~nL~lAGDwt~~~~~~~ 75 (78)
...|++.||+++..+.|.
T Consensus 30 ~d~li~lGD~iDrG~~s~ 47 (235)
T PHA02239 30 EETIVFLGDYVDRGKRSK 47 (235)
T ss_pred CCEEEEecCcCCCCCChH
Confidence 345999999999766553
No 186
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=20.43 E-value=1.8e+02 Score=20.94 Aligned_cols=28 Identities=14% Similarity=0.280 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCceeeEEEEE
Q 034934 5 NDEIIRRVAKQVLALFPSSQGLEVIWSSFVK 35 (78)
Q Consensus 5 ~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~ 35 (78)
||++.+++.++|.++-|+ -.+...||.+
T Consensus 145 DE~lK~ALQ~Dl~~mAPG---l~iqaVRVTK 172 (322)
T KOG2962|consen 145 DENLKDALQADLTRMAPG---LEIQAVRVTK 172 (322)
T ss_pred hHHHHHHHHHHHHhhCCC---cEEEEEEecC
Confidence 788899999999999996 4566667665
No 187
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=20.29 E-value=55 Score=25.12 Aligned_cols=14 Identities=14% Similarity=0.418 Sum_probs=11.4
Q ss_pred CCCCCCEEEecccc
Q 034934 55 KTPVKNFFLAGSYT 68 (78)
Q Consensus 55 ~T~~~nL~lAGDwt 68 (78)
-.+|||||.||.-+
T Consensus 504 g~pIpGLYAAG~~~ 517 (557)
T PRK12844 504 GSVIPGLYATGNCT 517 (557)
T ss_pred CCCccceeeccccc
Confidence 35899999999654
No 188
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=20.27 E-value=62 Score=27.24 Aligned_cols=16 Identities=25% Similarity=0.522 Sum_probs=13.4
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..+|+|.+||-+.
T Consensus 801 ~~Ts~pgVFAaGD~a~ 816 (1012)
T TIGR03315 801 GETNITNVFVIGDANR 816 (1012)
T ss_pred CccCCCCEEEEeCcCC
Confidence 4688999999999753
No 189
>PRK12839 hypothetical protein; Provisional
Probab=20.19 E-value=51 Score=25.48 Aligned_cols=14 Identities=29% Similarity=0.657 Sum_probs=11.5
Q ss_pred CCCCCCEEEecccc
Q 034934 55 KTPVKNFFLAGSYT 68 (78)
Q Consensus 55 ~T~~~nL~lAGDwt 68 (78)
-++|||||-||.-+
T Consensus 522 g~pIpGLYAAG~~~ 535 (572)
T PRK12839 522 DTPIDGLYAAGNDQ 535 (572)
T ss_pred CCCcCCceeccccc
Confidence 46899999999744
Done!