Query 034934
Match_columns 78
No_of_seqs 102 out of 574
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 12:42:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034934.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034934hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ka7_A Oxidoreductase; structu 98.9 4.1E-09 1.4E-13 73.7 8.3 62 6-71 343-404 (425)
2 3qj4_A Renalase; FAD/NAD(P)-bi 98.6 2.4E-07 8.1E-12 63.5 7.8 66 1-71 255-322 (342)
3 3nrn_A Uncharacterized protein 98.3 1.6E-06 5.4E-11 60.9 6.7 60 4-71 325-384 (421)
4 3lov_A Protoporphyrinogen oxid 98.2 2.4E-07 8.1E-12 65.9 0.4 67 2-70 374-444 (475)
5 1b37_A Protein (polyamine oxid 98.2 9.4E-07 3.2E-11 63.1 2.8 70 2-71 359-435 (472)
6 3i6d_A Protoporphyrinogen oxid 98.1 5.1E-07 1.8E-11 63.4 0.4 66 2-69 377-446 (470)
7 4dgk_A Phytoene dehydrogenase; 98.1 2.6E-06 9E-11 60.7 3.8 66 5-71 390-470 (501)
8 1s3e_A Amine oxidase [flavin-c 98.1 2.3E-06 7.9E-11 61.8 3.4 72 2-73 354-433 (520)
9 3nks_A Protoporphyrinogen oxid 98.0 1.1E-06 3.6E-11 62.3 0.0 67 2-70 383-453 (477)
10 1sez_A Protoporphyrinogen oxid 97.9 1.9E-06 6.5E-11 61.6 -0.1 66 2-69 403-471 (504)
11 2yg5_A Putrescine oxidase; oxi 97.8 7.3E-06 2.5E-10 57.7 2.3 70 3-73 353-430 (453)
12 2ivd_A PPO, PPOX, protoporphyr 97.6 1.9E-05 6.6E-10 55.9 1.9 65 2-69 383-451 (478)
13 1yvv_A Amine oxidase, flavin-c 97.5 0.00035 1.2E-08 46.9 6.7 64 2-70 243-306 (336)
14 2z3y_A Lysine-specific histone 97.4 0.00027 9.2E-09 53.1 6.1 71 2-72 546-636 (662)
15 2jae_A L-amino acid oxidase; o 97.4 7.2E-05 2.5E-09 53.3 2.7 69 2-70 381-462 (489)
16 2xag_A Lysine-specific histone 97.4 0.00048 1.7E-08 53.7 7.1 72 2-73 717-808 (852)
17 4gde_A UDP-galactopyranose mut 97.1 0.0001 3.5E-09 52.4 0.6 64 2-67 384-451 (513)
18 2vvm_A Monoamine oxidase N; FA 97.1 7.6E-05 2.6E-09 53.2 -0.3 68 3-72 389-463 (495)
19 2e1m_C L-glutamate oxidase; L- 97.1 4.5E-05 1.5E-09 49.3 -1.4 67 2-70 53-129 (181)
20 4gut_A Lysine-specific histone 97.0 0.0013 4.4E-08 50.8 5.6 73 2-74 677-757 (776)
21 4dsg_A UDP-galactopyranose mut 95.7 0.00084 2.9E-08 48.6 -1.7 66 2-69 360-429 (484)
22 2iid_A L-amino-acid oxidase; f 95.4 0.0013 4.6E-08 46.8 -1.6 68 2-70 383-461 (498)
23 3kkj_A Amine oxidase, flavin-c 94.4 0.2 7E-06 30.3 6.7 60 5-69 246-305 (336)
24 2b9w_A Putative aminooxidase; 93.2 0.012 4.2E-07 40.8 -0.6 63 2-70 338-405 (424)
25 3k7m_X 6-hydroxy-L-nicotine ox 91.2 0.42 1.4E-05 33.0 5.3 60 11-73 339-405 (431)
26 3g5s_A Methylenetetrahydrofola 84.7 0.37 1.3E-05 35.5 1.6 58 11-72 284-342 (443)
27 2zxi_A TRNA uridine 5-carboxym 84.3 1.9 6.4E-05 32.9 5.4 57 11-72 346-403 (637)
28 1rsg_A FMS1 protein; FAD bindi 79.2 8.5 0.00029 27.4 7.1 16 57-72 470-485 (516)
29 3ces_A MNMG, tRNA uridine 5-ca 79.0 3.9 0.00013 31.2 5.4 56 11-71 341-397 (651)
30 4gcm_A TRXR, thioredoxin reduc 78.7 1.4 4.7E-05 29.0 2.6 19 52-70 264-282 (312)
31 4a5l_A Thioredoxin reductase; 78.5 1.1 3.9E-05 29.2 2.1 17 54-70 272-288 (314)
32 4fk1_A Putative thioredoxin re 74.8 1.4 4.6E-05 29.1 1.7 18 52-69 258-275 (304)
33 3cp8_A TRNA uridine 5-carboxym 71.7 7.2 0.00025 29.6 5.2 54 13-71 337-391 (641)
34 3r9u_A Thioredoxin reductase; 70.6 3 0.0001 27.0 2.6 18 53-70 271-288 (315)
35 3fbs_A Oxidoreductase; structu 69.4 2.3 8E-05 27.2 1.9 17 54-70 253-269 (297)
36 3v76_A Flavoprotein; structura 68.9 0.93 3.2E-05 32.1 -0.2 21 57-77 381-404 (417)
37 3f8d_A Thioredoxin reductase ( 66.4 4.3 0.00015 26.2 2.7 17 54-70 275-291 (323)
38 3lzw_A Ferredoxin--NADP reduct 64.8 3.1 0.00011 27.1 1.8 17 54-70 273-289 (332)
39 2ywl_A Thioredoxin reductase r 64.1 3.5 0.00012 24.8 1.8 19 53-71 130-148 (180)
40 1trb_A Thioredoxin reductase; 64.0 4.2 0.00015 26.5 2.3 16 55-70 275-290 (320)
41 3fpz_A Thiazole biosynthetic e 62.9 2.5 8.5E-05 28.3 1.0 17 53-69 278-294 (326)
42 1fl2_A Alkyl hydroperoxide red 61.1 4.3 0.00015 26.4 1.9 17 54-70 265-281 (310)
43 2zbw_A Thioredoxin reductase; 61.0 4.3 0.00015 26.7 1.9 17 54-70 275-291 (335)
44 2q0l_A TRXR, thioredoxin reduc 60.4 6.1 0.00021 25.6 2.6 17 54-70 269-285 (311)
45 2e5v_A L-aspartate oxidase; ar 59.9 3.4 0.00012 29.5 1.4 18 52-69 323-340 (472)
46 3itj_A Thioredoxin reductase 1 59.7 5.3 0.00018 26.0 2.2 16 54-69 295-310 (338)
47 3ab1_A Ferredoxin--NADP reduct 59.4 4.6 0.00016 27.0 1.9 16 55-70 287-302 (360)
48 3cty_A Thioredoxin reductase; 58.7 5 0.00017 26.3 1.9 17 54-70 276-292 (319)
49 1vdc_A NTR, NADPH dependent th 58.3 6.2 0.00021 25.9 2.3 17 54-70 283-299 (333)
50 2q7v_A Thioredoxin reductase; 57.0 5.5 0.00019 26.1 1.9 16 55-70 273-288 (325)
51 2a87_A TRXR, TR, thioredoxin r 55.9 6.7 0.00023 25.9 2.2 17 54-70 276-292 (335)
52 2gqf_A Hypothetical protein HI 54.5 2.9 0.0001 29.2 0.2 15 56-70 361-375 (401)
53 2cul_A Glucose-inhibited divis 52.1 5.4 0.00018 25.4 1.2 13 56-68 196-208 (232)
54 4eqs_A Coenzyme A disulfide re 51.3 6.4 0.00022 27.7 1.6 19 52-70 262-280 (437)
55 4a9w_A Monooxygenase; baeyer-v 51.2 9 0.00031 25.0 2.2 16 54-69 310-327 (357)
56 3ayj_A Pro-enzyme of L-phenyla 49.9 10 0.00034 29.3 2.6 18 6-23 564-583 (721)
57 3kd9_A Coenzyme A disulfide re 49.2 8.4 0.00029 26.9 1.9 17 53-69 267-283 (449)
58 3d1c_A Flavin-containing putat 48.1 10 0.00036 25.1 2.2 17 54-70 296-312 (369)
59 1hyu_A AHPF, alkyl hydroperoxi 47.8 12 0.00042 26.9 2.6 18 53-70 475-492 (521)
60 2v3a_A Rubredoxin reductase; a 47.1 9.2 0.00032 26.0 1.8 17 54-70 265-281 (384)
61 3dk9_A Grase, GR, glutathione 45.9 9.7 0.00033 26.8 1.8 16 53-68 318-333 (478)
62 4dna_A Probable glutathione re 45.2 10 0.00035 26.6 1.9 17 53-69 293-309 (463)
63 3dgh_A TRXR-1, thioredoxin red 45.0 11 0.00037 26.7 1.9 17 53-69 313-329 (483)
64 3lxd_A FAD-dependent pyridine 44.8 10 0.00036 26.0 1.8 18 54-71 273-290 (415)
65 3dgz_A Thioredoxin reductase 2 44.8 8.7 0.0003 27.2 1.4 17 53-69 313-329 (488)
66 1chu_A Protein (L-aspartate ox 44.6 9.3 0.00032 27.8 1.6 18 52-69 361-378 (540)
67 3lad_A Dihydrolipoamide dehydr 44.6 10 0.00035 26.6 1.8 17 53-69 305-321 (476)
68 3urh_A Dihydrolipoyl dehydroge 44.1 11 0.00037 26.7 1.8 17 53-69 325-341 (491)
69 3oc4_A Oxidoreductase, pyridin 44.0 9.1 0.00031 26.8 1.4 17 54-70 267-283 (452)
70 1kf6_A Fumarate reductase flav 43.8 8.5 0.00029 28.5 1.3 17 52-68 366-382 (602)
71 1use_A VAsp, vasodilator-stimu 43.7 22 0.00077 18.0 2.5 12 6-17 14-25 (45)
72 3l8k_A Dihydrolipoyl dehydroge 43.7 9.2 0.00032 26.9 1.4 18 53-70 295-312 (466)
73 2a8x_A Dihydrolipoyl dehydroge 43.6 9.3 0.00032 26.8 1.4 16 54-69 297-312 (464)
74 3iwa_A FAD-dependent pyridine 43.2 11 0.00039 26.4 1.8 16 54-69 282-297 (472)
75 1dxl_A Dihydrolipoamide dehydr 43.1 12 0.00041 26.2 1.9 16 54-69 305-320 (470)
76 3fg2_P Putative rubredoxin red 42.6 12 0.0004 25.8 1.8 17 54-70 263-279 (404)
77 3o0h_A Glutathione reductase; 42.6 9.8 0.00033 26.9 1.4 17 53-69 313-329 (484)
78 1xhc_A NADH oxidase /nitrite r 42.4 10 0.00034 26.0 1.4 17 54-70 256-272 (367)
79 3qfa_A Thioredoxin reductase 1 42.4 9.9 0.00034 27.3 1.4 17 53-69 341-357 (519)
80 2cdu_A NADPH oxidase; flavoenz 42.3 10 0.00036 26.4 1.5 17 54-70 270-286 (452)
81 3ef6_A Toluene 1,2-dioxygenase 41.3 12 0.00043 25.7 1.8 17 54-70 263-279 (410)
82 3nlc_A Uncharacterized protein 41.1 47 0.0016 24.5 4.9 52 11-68 465-518 (549)
83 2gqw_A Ferredoxin reductase; f 40.8 13 0.00045 25.7 1.8 18 54-71 261-278 (408)
84 2hqm_A GR, grase, glutathione 40.5 11 0.00038 26.6 1.4 16 54-69 310-325 (479)
85 2qae_A Lipoamide, dihydrolipoy 40.5 11 0.00038 26.4 1.4 16 54-69 302-317 (468)
86 3ntd_A FAD-dependent pyridine 40.5 11 0.00038 27.0 1.4 17 53-69 290-306 (565)
87 1ges_A Glutathione reductase; 40.3 11 0.00039 26.3 1.5 16 54-69 291-306 (450)
88 2vdc_G Glutamate synthase [NAD 40.2 11 0.00038 26.8 1.4 16 54-69 405-420 (456)
89 1ebd_A E3BD, dihydrolipoamide 39.7 12 0.0004 26.2 1.4 16 54-69 296-311 (455)
90 3klj_A NAD(FAD)-dependent dehy 39.4 12 0.00041 25.9 1.4 17 54-70 253-269 (385)
91 1q1r_A Putidaredoxin reductase 39.2 12 0.00041 26.1 1.4 17 54-70 272-288 (431)
92 1v59_A Dihydrolipoamide dehydr 39.0 12 0.00041 26.2 1.4 16 54-69 313-328 (478)
93 3gyx_A Adenylylsulfate reducta 38.7 11 0.00036 28.5 1.1 16 53-68 447-462 (662)
94 3ic9_A Dihydrolipoamide dehydr 38.7 12 0.00042 26.6 1.4 17 53-69 300-316 (492)
95 1jnr_A Adenylylsulfate reducta 38.6 11 0.00037 28.1 1.2 16 55-70 428-443 (643)
96 1zmd_A Dihydrolipoyl dehydroge 38.4 12 0.00043 26.2 1.4 16 54-69 308-323 (474)
97 2x8g_A Thioredoxin glutathione 38.3 12 0.00042 27.1 1.4 16 54-69 421-436 (598)
98 3vrd_B FCCB subunit, flavocyto 37.8 18 0.00061 24.5 2.1 16 55-70 283-298 (401)
99 2eq6_A Pyruvate dehydrogenase 37.8 13 0.00044 26.2 1.4 16 54-69 297-312 (464)
100 1onf_A GR, grase, glutathione 37.8 16 0.00055 26.0 2.0 16 54-69 300-315 (500)
101 3ics_A Coenzyme A-disulfide re 37.6 13 0.00044 26.9 1.4 17 53-69 305-321 (588)
102 1ojt_A Surface protein; redox- 37.4 13 0.00045 26.2 1.4 16 54-69 312-327 (482)
103 4b1b_A TRXR, thioredoxin reduc 37.0 17 0.00059 26.6 2.0 17 54-70 346-362 (542)
104 3h8l_A NADH oxidase; membrane 36.7 22 0.00075 24.2 2.4 18 53-70 293-311 (409)
105 3cgb_A Pyridine nucleotide-dis 36.4 14 0.00048 26.1 1.4 17 54-70 306-322 (480)
106 1xdi_A RV3303C-LPDA; reductase 36.2 14 0.00049 26.1 1.5 16 54-69 305-320 (499)
107 3h28_A Sulfide-quinone reducta 35.9 18 0.00061 25.0 1.9 18 54-71 281-299 (430)
108 2r9z_A Glutathione amide reduc 35.8 15 0.0005 25.9 1.4 16 54-69 290-305 (463)
109 2bc0_A NADH oxidase; flavoprot 35.6 15 0.0005 26.1 1.4 17 54-70 314-330 (490)
110 2bs2_A Quinol-fumarate reducta 35.0 16 0.00053 27.6 1.6 17 52-68 379-395 (660)
111 2wpf_A Trypanothione reductase 34.3 16 0.00054 26.1 1.4 16 54-69 318-333 (495)
112 1fec_A Trypanothione reductase 34.2 16 0.00055 26.0 1.4 16 54-69 314-329 (490)
113 1nhp_A NADH peroxidase; oxidor 34.1 16 0.00055 25.4 1.4 16 54-69 269-284 (447)
114 1d4d_A Flavocytochrome C fumar 34.0 12 0.00042 27.2 0.8 14 56-69 525-538 (572)
115 1qo8_A Flavocytochrome C3 fuma 33.9 12 0.00042 27.1 0.8 14 56-69 519-532 (566)
116 1zk7_A HGII, reductase, mercur 33.9 20 0.0007 25.0 1.9 16 54-69 297-312 (467)
117 3sx6_A Sulfide-quinone reducta 33.7 18 0.00063 25.0 1.7 19 53-71 291-310 (437)
118 1lvl_A Dihydrolipoamide dehydr 33.5 17 0.00057 25.5 1.4 16 54-69 293-308 (458)
119 1y0p_A Fumarate reductase flav 33.2 12 0.00042 27.1 0.7 14 56-69 524-537 (571)
120 3dje_A Fructosyl amine: oxygen 33.0 85 0.0029 21.3 5.0 55 5-67 306-362 (438)
121 1mo9_A ORF3; nucleotide bindin 33.0 17 0.00059 26.0 1.4 16 54-69 341-356 (523)
122 3hyw_A Sulfide-quinone reducta 31.8 19 0.00066 25.0 1.5 14 56-69 284-297 (430)
123 2i0z_A NAD(FAD)-utilizing dehy 31.5 23 0.00077 24.8 1.8 15 56-70 402-416 (447)
124 3u21_A Nuclear factor related 31.1 7.7 0.00026 23.9 -0.5 14 62-77 65-78 (127)
125 3o5y_A Sensor protein; GAF dom 31.0 47 0.0016 20.0 3.1 21 2-22 3-23 (165)
126 2yqu_A 2-oxoglutarate dehydrog 27.9 40 0.0014 23.4 2.6 16 54-69 290-305 (455)
127 4at0_A 3-ketosteroid-delta4-5a 27.0 20 0.00068 25.6 0.9 14 56-69 466-479 (510)
128 2cnr_A FAS, ACP, acyl carrier 25.6 76 0.0026 16.2 3.4 21 1-21 1-21 (82)
129 2xve_A Flavin-containing monoo 25.4 29 0.001 24.4 1.5 13 56-68 305-317 (464)
130 1lqt_A FPRA; NADP+ derivative, 25.4 24 0.00083 25.0 1.1 14 56-69 349-362 (456)
131 2h88_A Succinate dehydrogenase 23.4 13 0.00045 27.7 -0.6 14 55-68 386-399 (621)
132 1gte_A Dihydropyrimidine dehyd 22.4 34 0.0012 27.0 1.5 16 54-69 469-484 (1025)
133 1o94_A Tmadh, trimethylamine d 20.6 31 0.0011 26.0 0.9 15 55-69 663-677 (729)
134 2g7o_A Protein TRAM; four heli 20.3 1.2E+02 0.0041 16.6 3.1 18 6-23 50-67 (70)
No 1
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=98.93 E-value=4.1e-09 Score=73.70 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEeccccccc
Q 034934 6 DEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 6 eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~~~nL~lAGDwt~~~ 71 (78)
++++++++++|++++|.. .+++ ..|.+.+.+.+.+.|| +..+|.+.||++||||||||+.+.
T Consensus 343 ~~~~~~~~~~l~~~~p~~-~~~~--~~v~~~~~~~P~~~~~-~~~~~~~~~p~~gL~laG~~~~~~ 404 (425)
T 3ka7_A 343 ESEIEMGLEDLKEIFPGK-RYEV--LLIQSYHDEWPVNRAA-SGTDPGNETPFSGLYVVGDGAKGK 404 (425)
T ss_dssp HHHHHHHHHHHHHHSTTC-CEEE--EEEEEEBTTBCSBSSC-TTCCCCSBCSSBTEEECSTTSCCT
T ss_pred HHHHHHHHHHHHHhCCCC-ceEE--EEEEEECCCccccccc-cCCCCCCCCCcCCeEEeCCccCCC
Confidence 566799999999999972 3333 4677788898888888 457899999999999999999873
No 2
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=98.57 E-value=2.4e-07 Score=63.47 Aligned_cols=66 Identities=15% Similarity=0.051 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCC--CCCCEEEeccccccc
Q 034934 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKT--PVKNFFLAGSYTKQY 71 (78)
Q Consensus 1 ~~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T--~~~nL~lAGDwt~~~ 71 (78)
+++++||+++.++++|+++++.. +.+...++.|.++|.+.... ..+|+... ..+||+|||||+...
T Consensus 255 ~~~~~~~~~~~~~~~l~~~~g~~--~~p~~~~v~rW~~a~p~~~~---~~~~~~~~~~~~~~l~laGd~~~g~ 322 (342)
T 3qj4_A 255 LEHSIEDVQELVFQQLENILPGL--PQPIATKCQKWRHSQVTNAA---ANCPGQMTLHHKPFLACGGDGFTQS 322 (342)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCSC--CCCSEEEEEEETTCSBSSCC---SSSCSCEEEETTTEEEECSGGGSCS
T ss_pred hcCCHHHHHHHHHHHHHHhccCC--CCCceeeecccccccccccc---CCCcceeEecCCccEEEEccccCCC
Confidence 36789999999999999999843 45677889999988875433 23666664 789999999999743
No 3
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=98.31 E-value=1.6e-06 Score=60.86 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEeccccccc
Q 034934 4 PNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 4 ~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~~~nL~lAGDwt~~~ 71 (78)
+.+|+++.+.++|++++| .+++...+..+....++...+|.. +. .++ +||||||||+++.
T Consensus 325 ~~~~~~~~~~~~L~~~~p---~~~~~~~~~~~~~~p~~~~~~~~~---~~-~~~-~gl~laGd~~~~~ 384 (421)
T 3nrn_A 325 NVKKAIEKGWEELLEIFP---EGEPLLAQVYRDGNPVNRTRAGLH---IE-WPL-NEVLVVGDGYRPP 384 (421)
T ss_dssp CHHHHHHHHHHHHHHHCT---TCEEEEEEEC-------------C---CC-CCC-SSEEECSTTCCCT
T ss_pred cHHHHHHHHHHHHHHHcC---CCeEEEeeeccCCCCcccccCCCC---CC-CCC-CcEEEECCcccCC
Confidence 345679999999999999 356655555554455555566653 33 788 9999999999865
No 4
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=98.19 E-value=2.4e-07 Score=65.87 Aligned_cols=67 Identities=13% Similarity=0.129 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCC----CCCCCCCCCCCEEEecccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDP----FRRDQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~----~RP~~~T~~~nL~lAGDwt~~ 70 (78)
.+++||+++.++++|+++++.. ..+....+.+.+++.+.+.||... .++...++++|||+||||+..
T Consensus 374 ~~~~e~~~~~~~~~L~~~~g~~--~~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g 444 (475)
T 3lov_A 374 HESDEVLQQAVLQDLEKICGRT--LEPKQVIISRLMDGLPAYTVGHADRIQRVREEVLAQYPGIYLAGLAYDG 444 (475)
T ss_dssp GSCHHHHHHHHHHHHHHHHSSC--CCCSEEEEEEEEEEEECCCTTHHHHHHHHHHHHHHHSTTEEECSTTTSC
T ss_pred CCCHHHHHHHHHHHHHHHhCCC--CCCeEEEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEccCCCC
Confidence 4689999999999999999863 456678899999999999999632 134344678999999998863
No 5
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=98.15 E-value=9.4e-07 Score=63.14 Aligned_cols=70 Identities=10% Similarity=0.137 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEe---C--Cceec-CCCCCCC-CCCCCCCCCCCEEEeccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKI---G--QSLCG-EGPGKDP-FRRDQKTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e---~--~At~~-~~pg~~~-~RP~~~T~~~nL~lAGDwt~~~ 71 (78)
.++++|+++.++++|++++|......+....+.+- + +..+. ..||... .++..++|++|||+|||+|.+.
T Consensus 359 ~~~~~e~~~~~l~~L~~~~Pg~~~~~~~~~~~~~W~~~~~~~G~~~~~~~g~~~~~~~~l~~p~~~l~fAG~~t~~~ 435 (472)
T 1b37_A 359 QQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEH 435 (472)
T ss_dssp TSCHHHHHHHHHHHHHHHCTTSCCCCCSEEECCCTTTCTTTSSSEEECBTTCCHHHHHHHHCCBTTEEECSGGGCTT
T ss_pred hCCHHHHHHHHHHHHHHHcCCCCCCCCceEEecccCCCCCCCcccCCCCCCCChhHHHHHhccCCcEEEeecccCCC
Confidence 36899999999999999998643234443333221 1 33344 4567642 3566788999999999999863
No 6
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=98.09 E-value=5.1e-07 Score=63.37 Aligned_cols=66 Identities=14% Similarity=0.202 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCC----CCCCCCCCCCCEEEeccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDP----FRRDQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~----~RP~~~T~~~nL~lAGDwt~ 69 (78)
.++++|+++.++++|++++|.. ..+....+.+.+++.+.+.+|... .++...++.+|||+||||+.
T Consensus 377 ~~~~~~~~~~~~~~l~~~~g~~--~~p~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~ 446 (470)
T 3i6d_A 377 DLSDNDIINIVLEDLKKVMNIN--GEPEMTCVTRWHESMPQYHVGHKQRIKELREALASAYPGVYMTGASFE 446 (470)
T ss_dssp TSCHHHHHHHHHHHHGGGSCCC--SCCSEEEEEEEEEEEEECBTTHHHHHHHHHHHHHHHSTTEEECSTTTS
T ss_pred CCCHHHHHHHHHHHHHHHhCCC--CCceEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhhCCCEEEEeecCC
Confidence 4789999999999999999863 456677888989999999998642 23334466789999999875
No 7
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=98.07 E-value=2.6e-06 Score=60.73 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHH-CCCCCCCceeeEEEEE----------eCCceecCCCCCC---CCCCCCC-CCCCCEEEeccccc
Q 034934 5 NDEIIRRVAKQVLAL-FPSSQGLEVIWSSFVK----------IGQSLCGEGPGKD---PFRRDQK-TPVKNFFLAGSYTK 69 (78)
Q Consensus 5 ~eel~~~~~~~L~~~-~P~~~~~~v~~~~v~~----------e~~At~~~~pg~~---~~RP~~~-T~~~nL~lAGDwt~ 69 (78)
++++.+++++.|++. +|+.+ ..++...+.. ...+.|...+... ..||... |+++|||||||||.
T Consensus 390 ~~~~~~~vl~~l~~~~~P~~~-~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~~~RP~~~~t~i~gLyl~G~~t~ 468 (501)
T 4dgk_A 390 GPKLRDRIFAYLEQHYMPGLR-SQLVTHRMFTPFDFRDQLNAYHGSAFSVEPVLTQSAWFRPHNRDKTITNLYLVGAGTH 468 (501)
T ss_dssp HHHHHHHHHHHHHHHTCTTHH-HHEEEEEEECTTTTC------------------------------CCTTEEECCCH--
T ss_pred HHHHHHHHHHHHHHhhCCChH-HceEEEEECCHHHHHHHcCCCCccccChhcchhhccccCCCCCCCCCCCEEEECCCCC
Confidence 467888899999875 47642 3344343331 1124455444322 2588664 89999999999997
Q ss_pred cc
Q 034934 70 QY 71 (78)
Q Consensus 70 ~~ 71 (78)
+.
T Consensus 469 pG 470 (501)
T 4dgk_A 469 PG 470 (501)
T ss_dssp --
T ss_pred Cc
Confidence 53
No 8
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=98.06 E-value=2.3e-06 Score=61.77 Aligned_cols=72 Identities=18% Similarity=0.216 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCcee-------cCCCCCC-CCCCCCCCCCCCEEEeccccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLC-------GEGPGKD-PFRRDQKTPVKNFFLAGSYTKQYGR 73 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~-------~~~pg~~-~~RP~~~T~~~nL~lAGDwt~~~~~ 73 (78)
.++++|+++.++++|++++|......+....+.+..+..| .+.||.. ..+|..++|++|||+|||+|++..+
T Consensus 354 ~~~~~e~~~~vl~~L~~~~~~~~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~l~~p~~~L~fAG~~t~~~~~ 433 (520)
T 1s3e_A 354 RLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWS 433 (520)
T ss_dssp TSCHHHHHHHHHHHHHHHHTCGGGGCCSEEEEEEGGGCTTTCSSSCBCCCTTHHHHHGGGTTCCBTTEEECSGGGCSSST
T ss_pred cCCHHHHHHHHHHHHHHHhCccccCCccEEEEEeeCCCCCCCCCCccccCCCccccchHHHhCCCCCEEEeehhhcCcCc
Confidence 4689999999999999999853223445555555443322 2455542 2356778899999999999975433
No 9
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=97.96 E-value=1.1e-06 Score=62.33 Aligned_cols=67 Identities=9% Similarity=-0.084 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCC----CCCCCCEEEecccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQ----KTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~----~T~~~nL~lAGDwt~~ 70 (78)
.+++||+++.++++|+++++.. ..+....+.+.++|.+.+.+|...++... ....+||++||||...
T Consensus 383 ~~~~~~~~~~~~~~L~~~~g~~--~~~~~~~v~rw~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~l~G~~~~G 453 (477)
T 3nks_A 383 VLSQELFQQRAQEAAATQLGLK--EMPSHCLVHLHKNCIPQYTLGHWQKLESARQFLTAHRLPLTLAGASYEG 453 (477)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCC--SCCSEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHTTCSEEECSTTTSC
T ss_pred CCCHHHHHHHHHHHHHHHhCCC--CCCcEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhcCCCEEEEccCCCC
Confidence 3689999999999999999753 45667889999999999999975332211 1224689999999753
No 10
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=97.86 E-value=1.9e-06 Score=61.60 Aligned_cols=66 Identities=14% Similarity=0.144 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCC---CCCCCCCCCEEEeccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFR---RDQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~R---P~~~T~~~nL~lAGDwt~ 69 (78)
.+++||+++.++++|+++++.. ..+....+.+.+++.+.+.+|..... +...++++|||+||||+.
T Consensus 403 ~~~~ee~~~~v~~~L~~~~g~~--~~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~ 471 (504)
T 1sez_A 403 KASRTELKEIVTSDLKQLLGAE--GEPTYVNHLYWSKAFPLYGHNYDSVLDAIDKMEKNLPGLFYAGNHRG 471 (504)
T ss_dssp TCCHHHHHHHHHHHHHHHHCBC--SCCSSEEEEEEEEEEECCCTTHHHHHHHHHHHHHHSTTEEECCSSSS
T ss_pred CCCHHHHHHHHHHHHHHHhCCC--CCCeEEEEeECCCCCCccCcCHHHHHHHHHHHHHhCCCEEEEeecCC
Confidence 4689999999999999999863 34556777777788888888864322 223467899999999986
No 11
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=97.81 E-value=7.3e-06 Score=57.73 Aligned_cols=70 Identities=16% Similarity=0.110 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCC-----cee--cCCCCCC-CCCCCCCCCCCCEEEeccccccccc
Q 034934 3 LPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQ-----SLC--GEGPGKD-PFRRDQKTPVKNFFLAGSYTKQYGR 73 (78)
Q Consensus 3 ~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~-----At~--~~~pg~~-~~RP~~~T~~~nL~lAGDwt~~~~~ 73 (78)
++++|+++.++++|++++|.. ...+....+.+-.+ ..+ .+.||.. ..+|..++|++|||+|||+|++..+
T Consensus 353 ~~~~~~~~~~l~~L~~~~~~~-~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~~~~p~~~l~~aG~~~~~~~~ 430 (453)
T 2yg5_A 353 LSAEERKATILASLARYLGPK-AEEPVVYYESDWGSEEWTRGCYAASFDLGGLHRYGADSRTPVGPIHFSCSDIAAEGY 430 (453)
T ss_dssp SCHHHHHHHHHHHHHHHHCGG-GGCCSEEEECCTTTCTTTCSSSCEEECTTHHHHHGGGTTCCBTTEEECCGGGCSTTT
T ss_pred CCHHHHHHHHHHHHHHHhCcc-CCCccEEEEeecCCCCCCCCCCcCcCCCCccccchHHHhCCcCceEEeecccccccc
Confidence 578999999999999999842 12333443333221 122 2356632 2356678899999999999976443
No 12
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=97.61 E-value=1.9e-05 Score=55.91 Aligned_cols=65 Identities=11% Similarity=0.060 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCC----CCCCCCCCCCEEEeccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPF----RRDQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~----RP~~~T~~~nL~lAGDwt~ 69 (78)
+++++++++.++++|.+++|.. ..+....+.+.+++.+.+.||.... ++...+ ++|||+||||+.
T Consensus 383 ~~~~~~~~~~~~~~l~~~~~~~--~~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~-~~~l~~aG~~~~ 451 (478)
T 2ivd_A 383 EQDEDALAALAREELKALAGVT--ARPSFTRVFRWPLGIPQYNLGHLERVAAIDAALQR-LPGLHLIGNAYK 451 (478)
T ss_dssp GSCHHHHHHHHHHHHHHHHCCC--SCCSEEEEEEESSCCBCCBTTHHHHHHHHHHHHHT-STTEEECSTTTS
T ss_pred CCCHHHHHHHHHHHHHHHhCCC--CCCcEEEEEECCCcccCCCcCHHHHHHHHHHHHhh-CCCEEEEccCCC
Confidence 3688999999999999999864 3455667778888877778875321 112223 789999999974
No 13
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=97.49 E-value=0.00035 Score=46.93 Aligned_cols=64 Identities=6% Similarity=0.035 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~~~nL~lAGDwt~~ 70 (78)
+++++++.+++.+++.++++.. ...+....+.+-+.+.+....+. +....+.++|+|||||+..
T Consensus 243 ~~~~~~~~~~l~~~l~~~lg~~-~~~p~~~~~~rw~~a~~~~~~~~----~~~~~~~~rl~laGDa~~g 306 (336)
T 1yvv_A 243 DASREQVIEHLHGAFAELIDCT-MPAPVFSLAHRWLYARPAGAHEW----GALSDADLGIYVCGDWCLS 306 (336)
T ss_dssp TSCHHHHHHHHHHHHHTTCSSC-CCCCSEEEEEEEEEEEESSCCCC----SCEEETTTTEEECCGGGTT
T ss_pred hCCHHHHHHHHHHHHHHHhCCC-CCCCcEEEccccCccCCCCCCCC----CeeecCCCCEEEEecCCCC
Confidence 5789999999999999999742 12233334444444443333222 1112456899999999964
No 14
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=97.42 E-value=0.00027 Score=53.08 Aligned_cols=71 Identities=17% Similarity=0.168 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCc-----eec-CCCCCCC--------------CCCCCCCCCCCE
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQS-----LCG-EGPGKDP--------------FRRDQKTPVKNF 61 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~A-----t~~-~~pg~~~--------------~RP~~~T~~~nL 61 (78)
.++++|+++.++++|+++|+......+....+.+-.+. .|. +.||... .+|...++.++|
T Consensus 546 ~lsdee~~~~~l~~L~~~~g~~~~~~p~~~~v~~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~~~~~~~~~~~grl 625 (662)
T 2z3y_A 546 NISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRL 625 (662)
T ss_dssp TSCHHHHHHHHHHHHHHHHCTTSSCCCSEEEECCTTTCTTTSSSCEECBTTCCTHHHHHHHCCBCC---------CCCCE
T ss_pred hCCHHHHHHHHHHHHHHHhCCcccCCCceeEEEEECCCCCCCcccccCCCCCchhhHHHHhCcCccccccccccCCCCcE
Confidence 57899999999999999998643345655656554443 232 3455421 134446678999
Q ss_pred EEecccccccc
Q 034934 62 FLAGSYTKQYG 72 (78)
Q Consensus 62 ~lAGDwt~~~~ 72 (78)
|+||++|+...
T Consensus 626 ~FAGe~ts~~~ 636 (662)
T 2z3y_A 626 FFAGEHTIRNY 636 (662)
T ss_dssp EECSGGGCTTS
T ss_pred EEEeccccCCC
Confidence 99999999643
No 15
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=97.41 E-value=7.2e-05 Score=53.29 Aligned_cols=69 Identities=13% Similarity=0.137 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecC------C------CCCC-CCCCCCCCCCCCEEEecccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGE------G------PGKD-PFRRDQKTPVKNFFLAGSYT 68 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~------~------pg~~-~~RP~~~T~~~nL~lAGDwt 68 (78)
.++++++++.++++|++++|......+....+.+-.+..+.. . ||.. ..++..+++.+|||+||+++
T Consensus 381 ~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~W~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~faG~~~ 460 (489)
T 2jae_A 381 SLTHRQRLAKAIAEGSEIHGEKYTRDISSSFSGSWRRTKYSESAWANWAGSGGSHGGAATPEYEKLLEPVDKIYFAGDHL 460 (489)
T ss_dssp TSCHHHHHHHHHHHHHHHHCGGGGSSEEEEEEEEGGGSTTTSCSSCEETTC-------CCHHHHHHTSCBTTEEECSGGG
T ss_pred cCCHHHHHHHHHHHHHHHcCcchhhhccccEEEEcCCCCCCCCcchhcccccCCCcccchhhHHHHhCCCCcEEEeEHHh
Confidence 468999999999999999985112344444444433433321 1 3321 12334467899999999999
Q ss_pred cc
Q 034934 69 KQ 70 (78)
Q Consensus 69 ~~ 70 (78)
..
T Consensus 461 ~~ 462 (489)
T 2jae_A 461 SN 462 (489)
T ss_dssp BS
T ss_pred cc
Confidence 63
No 16
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=97.38 E-value=0.00048 Score=53.70 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCc-----eec-CCCCCCC--------------CCCCCCCCCCCE
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQS-----LCG-EGPGKDP--------------FRRDQKTPVKNF 61 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~A-----t~~-~~pg~~~--------------~RP~~~T~~~nL 61 (78)
.++++++++.++++|+++|+......+....+.+-.+. .|. +.||... .||...++.++|
T Consensus 717 ~lsdeel~~~~l~~L~~ifG~~~~~~P~~~~vtrW~~dp~s~GsYs~~~pG~~~~~~~~L~~P~~~~~~~p~~~~~~grL 796 (852)
T 2xag_A 717 NISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRL 796 (852)
T ss_dssp GSCHHHHHHHHHHHHHHHHCTTTCCCCSEEEECCTTTCTTTSSSCEECBTTCCTTHHHHTTSCBCCCCSSTTCCCCCCCE
T ss_pred cCCHHHHHHHHHHHHHHHhCccccCCceEEEEEecCCCCCcCccccccCCCcchhhHHHHhCccccccccccccCCCCcE
Confidence 47899999999999999998643345666666654443 233 3555421 134456778999
Q ss_pred EEeccccccccc
Q 034934 62 FLAGSYTKQYGR 73 (78)
Q Consensus 62 ~lAGDwt~~~~~ 73 (78)
|+||++|+....
T Consensus 797 ~FAGE~Ts~~~~ 808 (852)
T 2xag_A 797 FFAGEHTIRNYP 808 (852)
T ss_dssp EECSGGGCTTST
T ss_pred EEEehhHhCCCC
Confidence 999999996443
No 17
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=97.09 E-value=0.0001 Score=52.35 Aligned_cols=64 Identities=8% Similarity=0.127 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCC----CCCCCCCCCCEEEeccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPF----RRDQKTPVKNFFLAGSY 67 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~----RP~~~T~~~nL~lAGDw 67 (78)
.+++|||++.+.++|.++.+....+.++...|.|.++|-+.+..|.... ++..+. +|||++|-+
T Consensus 384 ~~~de~l~~~~~~~L~~~~~i~~~~~i~~~~v~r~~~ayP~y~~~~~~~~~~~~~~l~~--~~l~~~GR~ 451 (513)
T 4gde_A 384 PVNQETILADCIQGLVNTEMLKPTDEIVSTYHRRFDHGYPTPTLEREGTLTQILPKLQD--KDIWSRGRF 451 (513)
T ss_dssp CCCTTTHHHHHHHHHHHTTSSCTTCEEEEEEEEEEEEEEECCBTTHHHHHHHHHHHHHH--TTEEECSTT
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCccceEEEEEEECCCeecccCHhHHHHHHHHHHHHhh--cCcEEecCC
Confidence 4789999999999999999876667899999999999999999886532 343333 699999943
No 18
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=97.06 E-value=7.6e-05 Score=53.24 Aligned_cols=68 Identities=19% Similarity=0.068 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEe---CC--ceec-CCCCCC-CCCCCCCCCCCCEEEecccccccc
Q 034934 3 LPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKI---GQ--SLCG-EGPGKD-PFRRDQKTPVKNFFLAGSYTKQYG 72 (78)
Q Consensus 3 ~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e---~~--At~~-~~pg~~-~~RP~~~T~~~nL~lAGDwt~~~~ 72 (78)
++++++++.++++|++++|.. ..+....+.+- +. ..|. +.||.. ..++...+|.+|||+|||++....
T Consensus 389 ~~~~e~~~~~~~~L~~~~~~~--~~~~~~~~~~W~~dp~~~g~y~~~~~g~~~~~~~~l~~p~~~l~fAGe~t~~~~ 463 (495)
T 2vvm_A 389 IQPDEDVRETLKAVGQLAPGT--FGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQGLREKHGGVVFANSDWALGW 463 (495)
T ss_dssp CCTTTCHHHHHHHHHTTSTTS--CCEEEEEECCTTTCTTTSSSSCCCCTTHHHHHHHHHHCCBTTEEECCGGGCSSS
T ss_pred CCCHHHHHHHHHHHHHhcCCC--CCceEEEEeEcCCCCCCCCCccCcCCCcchhhHHHHhCcCCCEEEechhhhcCC
Confidence 345677888999999999852 34444433332 21 2222 455643 224444568999999999998543
No 19
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=97.05 E-value=4.5e-05 Score=49.31 Aligned_cols=67 Identities=10% Similarity=0.033 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHHHHHC-CCCCCCceeeE--EEEE---eCC--ceec-CCCCCC-CCCCCCCCCCCCEEEecccccc
Q 034934 2 PLPNDEIIRRVAKQVLALF-PSSQGLEVIWS--SFVK---IGQ--SLCG-EGPGKD-PFRRDQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~-P~~~~~~v~~~--~v~~---e~~--At~~-~~pg~~-~~RP~~~T~~~nL~lAGDwt~~ 70 (78)
.++++|+++.++++|+++| |+. ..+... .+.+ ++. ..|. +.||.. ..++....|..+||+||++|+.
T Consensus 53 ~l~~~e~~~~~l~~L~~~~g~~~--~~~~~~~~~~~~W~~dp~~~Ga~s~~~pg~~~~~~~~l~~p~grl~FAGe~ts~ 129 (181)
T 2e1m_C 53 SFDDAERYGYALENLQSVHGRRI--EVFYTGAGQTQSWLRDPYACGEAAVYTPHQMTAFHLDVVRPEGPVYFAGEHVSL 129 (181)
T ss_dssp TSCTTTTHHHHHHHHHHHHCGGG--GGTEEEEEEEEESSSCTTTSSSEECCCTTHHHHHHHHHHSCBTTEEECSGGGTT
T ss_pred cCCHHHHHHHHHHHHHHHhCCCc--HhhccCcceecccCCCCCCCCcccCcCCCchHHHHHHHhCCCCcEEEEEHHHcC
Confidence 4788999999999999999 432 233233 3332 222 2233 466754 2345455678899999999985
No 20
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=96.95 E-value=0.0013 Score=50.77 Aligned_cols=73 Identities=11% Similarity=0.061 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecC------CCCCCC-CCCCCCCC-CCCEEEeccccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGE------GPGKDP-FRRDQKTP-VKNFFLAGSYTKQYGR 73 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~------~pg~~~-~RP~~~T~-~~nL~lAGDwt~~~~~ 73 (78)
.++++|+++.++++|+++|+....+.+....+.+-.+.-|.. .||... ..+....| ..+||+||++|+...+
T Consensus 677 ~lsdeel~~~~l~~L~~ifg~~~~~~P~~~~vt~W~~dp~s~Gsys~~~~g~~~~~~~~L~~p~~grL~FAGE~Ts~~~~ 756 (776)
T 4gut_A 677 TLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFP 756 (776)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTSCCCCCSEEEECCGGGCTTTCCSEEEEBTTCCTHHHHHHHCCBTTTEEECSGGGCSSSC
T ss_pred cCCHHHHHHHHHHHHHHHhCcccccCcceEEEecCCCCCccCCCCCccCCCCchhHHHHHhCcCCCcEEEEehhhcCCCC
Confidence 578999999999999999986433445555555433322221 223210 11111124 3789999999997654
Q ss_pred C
Q 034934 74 S 74 (78)
Q Consensus 74 ~ 74 (78)
+
T Consensus 757 g 757 (776)
T 4gut_A 757 Q 757 (776)
T ss_dssp S
T ss_pred c
Confidence 4
No 21
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=95.70 E-value=0.00084 Score=48.56 Aligned_cols=66 Identities=11% Similarity=0.087 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCC----CCCCCCCCCCEEEeccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPF----RRDQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~----RP~~~T~~~nL~lAGDwt~ 69 (78)
.++||||++.+.++|.++..-.....+....|.+.+.+-+.+.+|.... +..... . ||+++|.+-.
T Consensus 360 ~~~d~~l~~~a~~~L~~~~~~~~~~~~~~~~v~r~~~~yP~y~~~~~~~~~~~~~~l~~-~-~l~~~Gr~g~ 429 (484)
T 4dsg_A 360 PVNHSTLIEDCIVGCLASNLLLPEDLLVSKWHYRIEKGYPTPFIGRNNLLEKAQPELMS-R-CIYSRGRFGA 429 (484)
T ss_dssp CCCTTSHHHHHHHHHHHTTSCCTTCCEEEEEEEEEEEEEECCBTTHHHHHHHHHHHHHH-T-TEEECSTTTT
T ss_pred cCCHHHHHHHHHHHHHHcCCCCccceEEEEEEEEeCccccCCCccHHHHHHHHHHHHHh-C-CcEeecCCcc
Confidence 4689999999999999986432234566677889999999999996422 332222 3 9999998543
No 22
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=95.36 E-value=0.0013 Score=46.79 Aligned_cols=68 Identities=16% Similarity=0.118 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCc----eeeEEEEEeCCce------ecCCCCCCC-CCCCCCCCCCCEEEecccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLE----VIWSSFVKIGQSL------CGEGPGKDP-FRRDQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~----v~~~~v~~e~~At------~~~~pg~~~-~RP~~~T~~~nL~lAGDwt~~ 70 (78)
.++++|+++.++++|+++++... .. .....+.+-.... ....||... .++...++.+|||+||++|..
T Consensus 383 ~~~~~~~~~~~l~~L~~~~g~~~-~~~~~~~~~~~~~~W~~~p~~~G~~~~~~~~~~~~~~~~l~~p~~~l~fAGe~t~~ 461 (498)
T 2iid_A 383 ALDFKDCADIVFNDLSLIHQLPK-KDIQSFCYPSVIQKWSLDKYAMGGITTFTPYQFQHFSDPLTASQGRIYFAGEYTAQ 461 (498)
T ss_dssp TSCHHHHHHHHHHHHHHHHTCCH-HHHHHHEEEEEEEEGGGCTTTCSSEECCCTTHHHHHHHHHHCCBTTEEECSGGGSS
T ss_pred cCCHHHHHHHHHHHHHHHcCCCh-hhhhhhcCccEEEecCCCCCCCceeeecCCcchHHHHHHHhCCCCcEEEEEccccc
Confidence 47899999999999999997321 11 1122233322211 113344321 234445678999999999964
No 23
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=94.36 E-value=0.2 Score=30.34 Aligned_cols=60 Identities=7% Similarity=0.037 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEeccccc
Q 034934 5 NDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 5 ~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~~~nL~lAGDwt~ 69 (78)
..+..+.....+...+... ...+....+.+.+.+.+.... ..+...+..+|||||||+..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~a~~~~~~----~~~~~~~~~~~v~l~GDa~~ 305 (336)
T 3kkj_A 246 REQVIEHLHGAFAELIDCT-MPAPVFSLAHRWLYARPAGAH----EWGALSDADLGIYVCGDWCL 305 (336)
T ss_dssp HHHHHHHHHHHHHTTCSSC-CCCCSEEEEEEEEEEEESSCC----CCSSEEETTTTEEECCGGGT
T ss_pred chhhhhhhhhhhhhhccCC-cCcchheeccceeeccccccc----CccceeeCCCCEEEEecccC
Confidence 3444555566666655432 233444444444334333221 12333467789999999975
No 24
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=93.20 E-value=0.012 Score=40.79 Aligned_cols=63 Identities=13% Similarity=-0.016 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecC-----CCCCCCCCCCCCCCCCCEEEecccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGE-----GPGKDPFRRDQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~-----~pg~~~~RP~~~T~~~nL~lAGDwt~~ 70 (78)
+++++++.++++++|.++.+.. ..+... .... ..+.+ ..|. ..++....+.+|||+||+|+..
T Consensus 338 ~~~~~~~~~~v~~~l~~l~~~~--~~~~~~-~~w~--~~p~~~~~~~~~G~-~~~~~~~~~~~~l~~aG~~~~~ 405 (424)
T 2b9w_A 338 DKTQEECRQMVLDDMETFGHPV--EKIIEE-QTWY--YFPHVSSEDYKAGW-YEKVEGMQGRRNTFYAGEIMSF 405 (424)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCE--EEEEEE-EEEE--EEEECCHHHHHTTH-HHHHHHTTTGGGEEECSGGGSC
T ss_pred ccChHHHHHHHHHHHHHcCCcc--cccccc-ccee--eeeccCHHHHhccH-HHHHHHHhCCCCceEecccccc
Confidence 4678999999999999965421 111111 0111 11211 2222 1233444567899999999973
No 25
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=91.22 E-value=0.42 Score=32.97 Aligned_cols=60 Identities=17% Similarity=0.151 Sum_probs=36.8
Q ss_pred HHHHHHHHHCCCCCCCceeeEEEEE---eC---CceecCCCCCC-CCCCCCCCCCCCEEEeccccccccc
Q 034934 11 RVAKQVLALFPSSQGLEVIWSSFVK---IG---QSLCGEGPGKD-PFRRDQKTPVKNFFLAGSYTKQYGR 73 (78)
Q Consensus 11 ~~~~~L~~~~P~~~~~~v~~~~v~~---e~---~At~~~~pg~~-~~RP~~~T~~~nL~lAGDwt~~~~~ 73 (78)
++.+.|++++|+. .+....+.+ ++ .+-..+.||.. ..+|....|..+||+||..|.+..+
T Consensus 339 ~~~~~l~~~~~~~---~~~~~~~~~W~~d~~~~G~~~~~~~g~~~~~~~~l~~p~g~~~fAGe~t~~~~~ 405 (431)
T 3k7m_X 339 AVKDAVLYYLPEV---EVLGIDYHDWIADPLFEGPWVAPRVGQFSRVHKELGEPAGRIHFVGSDVSLEFP 405 (431)
T ss_dssp HHHHHHHHHCTTC---EEEEEECCCTTTCTTTSSSSCCCCTTTTTTSSGGGGSCBTTEEECSGGGCSSST
T ss_pred HHHHHHHHhcCCC---CccEeEecccCCCCCCCCCCCCcCCCCCcccHHHHhCCCCcEEEEehhhhccCC
Confidence 4667888999853 233222222 22 22223567763 4577777889999999987775443
No 26
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=84.65 E-value=0.37 Score=35.46 Aligned_cols=58 Identities=12% Similarity=0.252 Sum_probs=39.9
Q ss_pred HHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCC-CCCCEEEecccccccc
Q 034934 11 RVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKT-PVKNFFLAGSYTKQYG 72 (78)
Q Consensus 11 ~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T-~~~nL~lAGDwt~~~~ 72 (78)
.+..++-+.+|....+++....+.. +=+|..+|-. ..+.-+| .++|||+||+-+.+.|
T Consensus 284 ~~Q~~~~r~IpGLE~a~~~r~G~~~--ey~~i~sP~~--L~~tle~k~~~~Lf~AGqi~G~~G 342 (443)
T 3g5s_A 284 PEQKRLIQMIPGLENAEIVRYGVMH--RNTYLNAPRL--LGETLEFREAEGLYAAGVLAGVEG 342 (443)
T ss_dssp HHHHHHHTTSTTCTTCCEEECCEEE--EEEEECHHHH--BCTTSEETTEEEEEECGGGGTBCS
T ss_pred HHHHHHHhcCcChhhCeeeeCcEee--cCceecChhH--hChhceecCCCCEEECccccccHH
Confidence 3556777889998888876555544 2356655543 4566666 5999999998877643
No 27
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=84.28 E-value=1.9 Score=32.86 Aligned_cols=57 Identities=16% Similarity=0.276 Sum_probs=36.5
Q ss_pred HHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCC-CCCEEEecccccccc
Q 034934 11 RVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTP-VKNFFLAGSYTKQYG 72 (78)
Q Consensus 11 ~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~-~~nL~lAGDwt~~~~ 72 (78)
.+..++-+.+|....+++....+..+ =.|.. |-. ..|.-+|. ++|||+||+-+.+.|
T Consensus 346 ~~Q~~~~~~ipGle~a~~~r~Gy~ie--yd~i~-p~~--l~~tLe~k~~~gLf~AGqinGt~G 403 (637)
T 2zxi_A 346 EVQWEMYRSIPGLENVVLIRPAYAIE--YDVVP-PTE--LYPTLETKKIRGLFHAGNFNGTTG 403 (637)
T ss_dssp HHHHHHHTTSTTCTTCCEEECCEEEE--EEECC-GGG--BCTTSBBSSSBTEEECGGGGTBCS
T ss_pred HHHHHHHhhCcCcccceEeccccccc--cceEc-hhh--cCccccccCCCCEEEeeecCCcch
Confidence 34566777889887788765444321 12333 332 45666764 899999998877654
No 28
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=79.25 E-value=8.5 Score=27.37 Aligned_cols=16 Identities=25% Similarity=0.154 Sum_probs=13.2
Q ss_pred CCCCEEEecccccccc
Q 034934 57 PVKNFFLAGSYTKQYG 72 (78)
Q Consensus 57 ~~~nL~lAGDwt~~~~ 72 (78)
+..+||+||+.|+...
T Consensus 470 ~~~rl~FAGe~ts~~~ 485 (516)
T 1rsg_A 470 QDSRIRFAGEHTIMDG 485 (516)
T ss_dssp SSSSEEECSTTSCSTT
T ss_pred CCCcEEEeccccccCC
Confidence 6689999999998643
No 29
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=78.98 E-value=3.9 Score=31.22 Aligned_cols=56 Identities=11% Similarity=0.240 Sum_probs=34.9
Q ss_pred HHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCC-CCCCEEEeccccccc
Q 034934 11 RVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKT-PVKNFFLAGSYTKQY 71 (78)
Q Consensus 11 ~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T-~~~nL~lAGDwt~~~ 71 (78)
.+..++-+.+|....+++....+.. +-.|.. |-. ..|.-+| .++|||+||.-+.+.
T Consensus 341 ~~q~~~~~~ipGle~a~i~r~Gy~i--eyd~i~-p~~--L~~tle~k~~~gLf~AGqinGtt 397 (651)
T 3ces_A 341 DVQMQIVRSMQGMENAKIVRPGYAI--EYDFFD-PRD--LKPTLESKFIQGLFFAGQINGTT 397 (651)
T ss_dssp HHHHHHHHTSTTCTTCCEEECCEEE--EEEEEC-GGG--BCTTSBBSSSBTEEECSGGGTCC
T ss_pred HHHHHHHhhCCCccceEEEecccee--ccCccc-hhh--cCccccccCCCCeEEEEEecCCc
Confidence 3455667778988778865443322 113333 332 3466676 589999999877654
No 30
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=78.66 E-value=1.4 Score=29.02 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=15.4
Q ss_pred CCCCCCCCCEEEecccccc
Q 034934 52 RDQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 52 P~~~T~~~nL~lAGDwt~~ 70 (78)
...+|++||+|.|||-+..
T Consensus 264 ~~~~Ts~pgIyA~GDv~~~ 282 (312)
T 4gcm_A 264 DDMTTSVPGIFAAGDVRDK 282 (312)
T ss_dssp TTSBCSSTTEEECSTTBSC
T ss_pred CCCccCCCCEEEEeecCCC
Confidence 4557899999999997753
No 31
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=78.52 E-value=1.1 Score=29.19 Aligned_cols=17 Identities=29% Similarity=0.474 Sum_probs=14.4
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|++||+|.|||-+..
T Consensus 272 ~~Ts~pgIyA~GDv~~~ 288 (314)
T 4a5l_A 272 PKTSVDGVFACGDVCDR 288 (314)
T ss_dssp TBCSSTTEEECSTTTCS
T ss_pred CccCCCCEEEEEeccCC
Confidence 47999999999997653
No 32
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=74.77 E-value=1.4 Score=29.12 Aligned_cols=18 Identities=39% Similarity=0.462 Sum_probs=14.7
Q ss_pred CCCCCCCCCEEEeccccc
Q 034934 52 RDQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 52 P~~~T~~~nL~lAGDwt~ 69 (78)
...+|++||+|.|||-+.
T Consensus 258 ~~~~Ts~p~IyA~GDv~~ 275 (304)
T 4fk1_A 258 DFGRTSEKNIYLAGETTT 275 (304)
T ss_dssp TTCBCSSTTEEECSHHHH
T ss_pred cCCccCCCCEEEEeccCC
Confidence 345789999999999764
No 33
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=71.69 E-value=7.2 Score=29.64 Aligned_cols=54 Identities=22% Similarity=0.269 Sum_probs=32.8
Q ss_pred HHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCC-CCCCEEEeccccccc
Q 034934 13 AKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKT-PVKNFFLAGSYTKQY 71 (78)
Q Consensus 13 ~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T-~~~nL~lAGDwt~~~ 71 (78)
..++.+.+|....+.+....+..+ -+|.. |-. ..+.-+| .++|||+||+-+.+.
T Consensus 337 q~~~~~~i~gle~a~~~~~G~~~~--y~~i~-p~~--l~~tle~k~~~gLf~AGqi~g~~ 391 (641)
T 3cp8_A 337 QIAGLRSIPGLEEAKMIRPGYAIE--YDFFH-PWQ--IRSTMETRPVENLFFAGQINGTS 391 (641)
T ss_dssp HHHHHTTSTTCTTCCEEECCEEEE--EEEEC-GGG--BCTTSBBSSSBTEEECSGGGTBC
T ss_pred HHHHHhcCcchhhceEecceeeec--ceEEC-HHH--cCCcccccCcCCEEEEEeecCCc
Confidence 445556678777777655443331 12333 322 3456677 599999999987764
No 34
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=70.57 E-value=3 Score=26.97 Aligned_cols=18 Identities=33% Similarity=0.528 Sum_probs=14.3
Q ss_pred CCCCCCCCEEEecccccc
Q 034934 53 DQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~~ 70 (78)
..+|..+|+|.|||-+..
T Consensus 271 ~~~t~~~~v~a~GD~~~~ 288 (315)
T 3r9u_A 271 KMQTSVAGLFAAGDLRKD 288 (315)
T ss_dssp TCBCSSTTEEECGGGBTT
T ss_pred CcccCCCCEEEeecccCC
Confidence 446788999999998753
No 35
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=69.42 E-value=2.3 Score=27.22 Aligned_cols=17 Identities=18% Similarity=0.495 Sum_probs=14.1
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|..||+|.+||-+..
T Consensus 253 ~~t~~~~vya~GD~~~~ 269 (297)
T 3fbs_A 253 KQTTARGIFACGDVARP 269 (297)
T ss_dssp CBCSSTTEEECSGGGCT
T ss_pred CccCCCCEEEEeecCCc
Confidence 46889999999997653
No 36
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=68.93 E-value=0.93 Score=32.13 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=15.2
Q ss_pred CCCCEEEec---ccccccccCCcc
Q 034934 57 PVKNFFLAG---SYTKQYGRSNFV 77 (78)
Q Consensus 57 ~~~nL~lAG---Dwt~~~~~~~~~ 77 (78)
-+||||+|| ||...-|--||-
T Consensus 381 ~~~gLy~aGE~lD~~~~~GGynlq 404 (417)
T 3v76_A 381 EVPGLYFVGECVDVTGWLGGYNFQ 404 (417)
T ss_dssp TSTTEEECGGGBSEEECSSSHHHH
T ss_pred CCCCeEEEEEeEecccCCCCHHHH
Confidence 689999999 666555555553
No 37
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=66.39 E-value=4.3 Score=26.23 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=14.2
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|..+|+|.|||-+..
T Consensus 275 ~~t~~~~vya~GD~~~~ 291 (323)
T 3f8d_A 275 MRTSVPGVFAAGDCTSA 291 (323)
T ss_dssp CBCSSTTEEECSTTBST
T ss_pred ceecCCCEEEcceecCC
Confidence 46789999999998764
No 38
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=64.77 E-value=3.1 Score=27.07 Aligned_cols=17 Identities=29% Similarity=0.510 Sum_probs=14.0
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|..+|+|.|||-+..
T Consensus 273 ~~t~~~~vya~GD~~~~ 289 (332)
T 3lzw_A 273 METNIEGFFAAGDICTY 289 (332)
T ss_dssp SBCSSTTEEECGGGEEC
T ss_pred CceecCCEEEccceecC
Confidence 35789999999998753
No 39
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=64.14 E-value=3.5 Score=24.83 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=15.2
Q ss_pred CCCCCCCCEEEeccccccc
Q 034934 53 DQKTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~~~ 71 (78)
..+|..||+|.+||-+...
T Consensus 130 ~~~t~~~~i~a~GD~~~~~ 148 (180)
T 2ywl_A 130 GGRTSYPRVYAAGVARGKV 148 (180)
T ss_dssp TCBCSSTTEEECGGGGTCC
T ss_pred CCCcCCCCEEEeecccCcc
Confidence 3467899999999987653
No 40
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=63.98 E-value=4.2 Score=26.45 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=14.1
Q ss_pred CCCCCCEEEecccccc
Q 034934 55 KTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 55 ~T~~~nL~lAGDwt~~ 70 (78)
+|..||+|.+||-+..
T Consensus 275 ~t~~~~vya~GD~~~~ 290 (320)
T 1trb_A 275 QTSIPGVFAAGDVMDH 290 (320)
T ss_dssp BCSSTTEEECGGGGCS
T ss_pred cCCCCCEEEcccccCC
Confidence 6889999999998764
No 41
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=62.85 E-value=2.5 Score=28.27 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=13.9
Q ss_pred CCCCCCCCEEEeccccc
Q 034934 53 DQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~ 69 (78)
..+|.+||+|.|||-+.
T Consensus 278 ~~~t~vpGv~aaGDaa~ 294 (326)
T 3fpz_A 278 GAYAGVDNMYFAGMEVA 294 (326)
T ss_dssp EECTTSBTEEECTHHHH
T ss_pred CeEECCCCEEEEchHhc
Confidence 34688999999999764
No 42
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=61.06 E-value=4.3 Score=26.35 Aligned_cols=17 Identities=41% Similarity=0.460 Sum_probs=14.0
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|..||+|.+||-+..
T Consensus 265 ~~t~~~~vya~GD~~~~ 281 (310)
T 1fl2_A 265 CETNVKGVFAAGDCTTV 281 (310)
T ss_dssp CBCSSTTEEECSTTBSC
T ss_pred CccCCCCEEEeecccCC
Confidence 45789999999998764
No 43
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=60.98 E-value=4.3 Score=26.67 Aligned_cols=17 Identities=12% Similarity=0.270 Sum_probs=13.9
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|..||+|.+||-+..
T Consensus 275 ~~t~~~~vya~GD~~~~ 291 (335)
T 2zbw_A 275 MATSIPGVYACGDIVTY 291 (335)
T ss_dssp CBCSSTTEEECSTTEEC
T ss_pred CCCCCCCEEEecccccc
Confidence 35789999999997753
No 44
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=60.40 E-value=6.1 Score=25.62 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=14.1
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|..||+|.+||-+..
T Consensus 269 ~~t~~~~vya~GD~~~~ 285 (311)
T 2q0l_A 269 MKTNVQGLFAAGDIRIF 285 (311)
T ss_dssp CBCSSTTEEECSTTBTT
T ss_pred cccCCCCeEEcccccCc
Confidence 45789999999998764
No 45
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=59.92 E-value=3.4 Score=29.51 Aligned_cols=18 Identities=11% Similarity=0.300 Sum_probs=15.2
Q ss_pred CCCCCCCCCEEEeccccc
Q 034934 52 RDQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 52 P~~~T~~~nL~lAGDwt~ 69 (78)
...+|++||||-|||-+.
T Consensus 323 ~~~~t~ipgLyAaGd~a~ 340 (472)
T 2e5v_A 323 IRGESNIVNLYAIGEVSD 340 (472)
T ss_dssp TTCBCSSBTEEECGGGEE
T ss_pred CCCccccCCEEecchhcc
Confidence 346789999999999876
No 46
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=59.68 E-value=5.3 Score=26.02 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=13.7
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..+|+|.|||-+.
T Consensus 295 ~~t~~~~vya~GD~~~ 310 (338)
T 3itj_A 295 SLTSVPGFFAAGDVQD 310 (338)
T ss_dssp SBCSSTTEEECGGGGC
T ss_pred cccCCCCEEEeeccCC
Confidence 4578999999999876
No 47
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=59.39 E-value=4.6 Score=26.99 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=13.5
Q ss_pred CCCCCCEEEecccccc
Q 034934 55 KTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 55 ~T~~~nL~lAGDwt~~ 70 (78)
+|..||+|.+||-+..
T Consensus 287 ~t~~~~vya~GD~~~~ 302 (360)
T 3ab1_A 287 KTSVDGLYAAGDIAYY 302 (360)
T ss_dssp BCSSTTEEECSTTEEC
T ss_pred cCCCCCEEEecCccCC
Confidence 5789999999997764
No 48
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=58.73 E-value=5 Score=26.28 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=14.2
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|..||+|.+||-+..
T Consensus 276 ~~t~~~~vya~GD~~~~ 292 (319)
T 3cty_A 276 QRTSVPGVYAAGDVTSG 292 (319)
T ss_dssp CBCSSTTEEECSTTBTT
T ss_pred CccCCCCEEEeecccCc
Confidence 45789999999998764
No 49
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=58.29 E-value=6.2 Score=25.87 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=14.3
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|..||+|.|||-+..
T Consensus 283 ~~t~~~~vya~GD~~~~ 299 (333)
T 1vdc_A 283 TQTSVPGVFAAGDVQDK 299 (333)
T ss_dssp CBCSSTTEEECGGGGCS
T ss_pred cccCCCCEEEeeeccCC
Confidence 36889999999998764
No 50
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=56.96 E-value=5.5 Score=26.14 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=13.6
Q ss_pred CCCCCCEEEecccccc
Q 034934 55 KTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 55 ~T~~~nL~lAGDwt~~ 70 (78)
+|..||+|.+||-+..
T Consensus 273 ~t~~~~vya~GD~~~~ 288 (325)
T 2q7v_A 273 YTNIPMLFAAGDVSDY 288 (325)
T ss_dssp BCSSTTEEECSTTTCS
T ss_pred ccCCCCEEEeecccCc
Confidence 5788999999998764
No 51
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=55.90 E-value=6.7 Score=25.94 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=14.3
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|..||+|.+||-+..
T Consensus 276 ~~t~~~~iya~GD~~~~ 292 (335)
T 2a87_A 276 TSTSLPGVFAAGDLVDR 292 (335)
T ss_dssp SBCSSTTEEECGGGTCC
T ss_pred CccCCCCEEEeeecCCc
Confidence 36789999999998764
No 52
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=54.46 E-value=2.9 Score=29.25 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=12.3
Q ss_pred CCCCCEEEecccccc
Q 034934 56 TPVKNFFLAGSYTKQ 70 (78)
Q Consensus 56 T~~~nL~lAGDwt~~ 70 (78)
+.+||||+||+-++-
T Consensus 361 ~~~~gly~~GE~ldv 375 (401)
T 2gqf_A 361 NQVSGLYFIGEVLDV 375 (401)
T ss_dssp SSSTTEEECGGGBSC
T ss_pred cCCCCEEEEEEeEEe
Confidence 479999999977663
No 53
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=52.10 E-value=5.4 Score=25.38 Aligned_cols=13 Identities=8% Similarity=0.325 Sum_probs=11.9
Q ss_pred CCCCCEEEecccc
Q 034934 56 TPVKNFFLAGSYT 68 (78)
Q Consensus 56 T~~~nL~lAGDwt 68 (78)
|.+||||.+||-.
T Consensus 196 t~~p~iya~G~~a 208 (232)
T 2cul_A 196 KRLEGLYAVGLCV 208 (232)
T ss_dssp TTSBSEEECGGGT
T ss_pred cccccceeeeecc
Confidence 7899999999976
No 54
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=51.26 E-value=6.4 Score=27.67 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=15.4
Q ss_pred CCCCCCCCCEEEecccccc
Q 034934 52 RDQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 52 P~~~T~~~nL~lAGDwt~~ 70 (78)
...+|..||+|.|||-+..
T Consensus 262 ~~~~Ts~p~IyA~GDva~~ 280 (437)
T 4eqs_A 262 DKFETNVPNIYAIGDIATS 280 (437)
T ss_dssp TTCBCSSTTEEECGGGEEE
T ss_pred CCccCCCCCEEEEEEccCc
Confidence 3457899999999998763
No 55
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=51.19 E-value=9 Score=24.96 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=13.0
Q ss_pred CCCCCCCEEEec--cccc
Q 034934 54 QKTPVKNFFLAG--SYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAG--Dwt~ 69 (78)
..|..||+|.+| |-+.
T Consensus 310 ~~t~~~~vya~Gd~d~~~ 327 (357)
T 4a9w_A 310 RALAVPSVWLLGYGDWNG 327 (357)
T ss_dssp BBSSCTTEEECSSCGGGS
T ss_pred cCCCCCCeEEeccccccc
Confidence 578999999999 5554
No 56
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=49.91 E-value=10 Score=29.27 Aligned_cols=18 Identities=11% Similarity=0.357 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHH--HHCCCC
Q 034934 6 DEIIRRVAKQVL--ALFPSS 23 (78)
Q Consensus 6 eel~~~~~~~L~--~~~P~~ 23 (78)
+++++.++++|+ +++|+.
T Consensus 564 ~~~~~~~l~~la~~~~~p~~ 583 (721)
T 3ayj_A 564 DGMYRTMVNRAYRYVKYAGA 583 (721)
T ss_dssp HHHHHHHHHHTCCEECCTTC
T ss_pred hHHHHHHHHHHhhhccCccc
Confidence 456889999999 888863
No 57
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=49.23 E-value=8.4 Score=26.87 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=14.4
Q ss_pred CCCCCCCCEEEeccccc
Q 034934 53 DQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~ 69 (78)
..+|..||+|.+||-+.
T Consensus 267 ~~~t~~~~IyA~GD~~~ 283 (449)
T 3kd9_A 267 KMQTSVENVYAAGDVAE 283 (449)
T ss_dssp TCBCSSTTEEECSTTBC
T ss_pred CCccCCCCEEEeeeeee
Confidence 34689999999999875
No 58
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=48.07 E-value=10 Score=25.08 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=13.8
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
..|..||+|.+||-+..
T Consensus 296 ~~t~~~~v~a~GD~~~~ 312 (369)
T 3d1c_A 296 ESTRYPNIFMIGATVEN 312 (369)
T ss_dssp BBSSSTTEEECSTTCCC
T ss_pred cccCCCCeEEecccccc
Confidence 34788999999997764
No 59
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=47.76 E-value=12 Score=26.90 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=14.7
Q ss_pred CCCCCCCCEEEecccccc
Q 034934 53 DQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~~ 70 (78)
..+|..||+|.|||-+..
T Consensus 475 ~~~ts~p~VfA~GD~~~~ 492 (521)
T 1hyu_A 475 KCETSVKGVFAAGDCTTV 492 (521)
T ss_dssp TCBCSSTTEEECSTTBCC
T ss_pred CCCCCCCCEEEeecccCC
Confidence 345789999999998764
No 60
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=47.13 E-value=9.2 Score=26.03 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=14.4
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|..||+|.+||-+..
T Consensus 265 ~~t~~~~IyA~GD~~~~ 281 (384)
T 2v3a_A 265 LRTSHANIYALGDCAEV 281 (384)
T ss_dssp CBCSSTTEEECGGGEEE
T ss_pred CCCCCCCEEEeeeeeeE
Confidence 46889999999998763
No 61
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=45.88 E-value=9.7 Score=26.77 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=13.5
Q ss_pred CCCCCCCCEEEecccc
Q 034934 53 DQKTPVKNFFLAGSYT 68 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt 68 (78)
..+|..+|+|.+||-+
T Consensus 318 ~~~t~~~~IyA~GD~~ 333 (478)
T 3dk9_A 318 FQNTNVKGIYAVGDVC 333 (478)
T ss_dssp TCBCSSTTEEECGGGG
T ss_pred CcccCCCCEEEEEecC
Confidence 3468899999999977
No 62
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=45.20 E-value=10 Score=26.57 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=14.1
Q ss_pred CCCCCCCCEEEeccccc
Q 034934 53 DQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~ 69 (78)
..+|..||+|.+||-+.
T Consensus 293 ~~~t~~~~iya~GD~~~ 309 (463)
T 4dna_A 293 FSRTSTPGIYALGDVTD 309 (463)
T ss_dssp TCBCSSTTEEECSGGGS
T ss_pred CCCCCCCCEEEEEecCC
Confidence 35688999999999765
No 63
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=44.99 E-value=11 Score=26.65 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=14.2
Q ss_pred CCCCCCCCEEEeccccc
Q 034934 53 DQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~ 69 (78)
..+|..||+|.+||-+.
T Consensus 313 ~~~t~~~~IyA~GD~~~ 329 (483)
T 3dgh_A 313 QEATNVANIYAVGDIIY 329 (483)
T ss_dssp TCBCSSTTEEECSTTBT
T ss_pred CCccCCCCEEEEEcccC
Confidence 35688999999999874
No 64
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=44.79 E-value=10 Score=26.04 Aligned_cols=18 Identities=11% Similarity=0.303 Sum_probs=14.8
Q ss_pred CCCCCCCEEEeccccccc
Q 034934 54 QKTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~~ 71 (78)
.+|..||+|.|||-+...
T Consensus 273 ~~t~~~~iyA~GD~a~~~ 290 (415)
T 3lxd_A 273 CRTSLTDVYAIGDCAAHA 290 (415)
T ss_dssp CBCSSTTEEECGGGEEEE
T ss_pred CCcCCCCEEEEEeeeeec
Confidence 468899999999987643
No 65
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=44.79 E-value=8.7 Score=27.21 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=14.0
Q ss_pred CCCCCCCCEEEeccccc
Q 034934 53 DQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~ 69 (78)
..+|..||+|.+||-+.
T Consensus 313 ~~~t~~~~IyA~GD~~~ 329 (488)
T 3dgz_A 313 QEATSVPHIYAIGDVAE 329 (488)
T ss_dssp TSBCSSTTEEECGGGBT
T ss_pred CCccCCCCEEEeEEecC
Confidence 34688999999999874
No 66
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=44.63 E-value=9.3 Score=27.82 Aligned_cols=18 Identities=17% Similarity=0.350 Sum_probs=14.4
Q ss_pred CCCCCCCCCEEEeccccc
Q 034934 52 RDQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 52 P~~~T~~~nL~lAGDwt~ 69 (78)
...+|++||||.||+-..
T Consensus 361 ~~~~t~I~GLyAaGE~a~ 378 (540)
T 1chu_A 361 DHGRTDVEGLYAIGEVSY 378 (540)
T ss_dssp TTCBCSSBTEEECGGGEE
T ss_pred CCCCCccCCEEecccccc
Confidence 344589999999999763
No 67
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=44.61 E-value=10 Score=26.60 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=14.0
Q ss_pred CCCCCCCCEEEeccccc
Q 034934 53 DQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~ 69 (78)
..+|..||+|.+||-+.
T Consensus 305 ~~~t~~~~Iya~GD~~~ 321 (476)
T 3lad_A 305 YCATSVPGVYAIGDVVR 321 (476)
T ss_dssp TSBCSSTTEEECGGGSS
T ss_pred CcccCCCCEEEEEccCC
Confidence 34688999999999873
No 68
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=44.06 E-value=11 Score=26.69 Aligned_cols=17 Identities=12% Similarity=0.339 Sum_probs=13.9
Q ss_pred CCCCCCCCEEEeccccc
Q 034934 53 DQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~ 69 (78)
..+|..||+|.+||-+.
T Consensus 325 ~~~t~~~~IyA~GD~~~ 341 (491)
T 3urh_A 325 HFQTSIAGVYAIGDVVR 341 (491)
T ss_dssp TCBCSSTTEEECGGGSS
T ss_pred CCCCCCCCEEEEEecCC
Confidence 35688999999999773
No 69
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=43.97 E-value=9.1 Score=26.77 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=14.3
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|..||+|.+||-+..
T Consensus 267 ~~t~~~~IyA~GD~~~~ 283 (452)
T 3oc4_A 267 LQTSVPNVFAIGDCISV 283 (452)
T ss_dssp CBCSSTTEEECGGGBCE
T ss_pred ccCCCCCEEEEEeeEEe
Confidence 46789999999998764
No 70
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=43.80 E-value=8.5 Score=28.50 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=14.2
Q ss_pred CCCCCCCCCEEEecccc
Q 034934 52 RDQKTPVKNFFLAGSYT 68 (78)
Q Consensus 52 P~~~T~~~nL~lAGDwt 68 (78)
...+|++||||-||+-.
T Consensus 366 ~~~~~~IpGLyAaGe~a 382 (602)
T 1kf6_A 366 QNCETRIKGLFAVGECS 382 (602)
T ss_dssp TTSBCSSBTEEECGGGE
T ss_pred CCCccccCCEEEccccc
Confidence 44677999999999975
No 71
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=43.67 E-value=22 Score=17.97 Aligned_cols=12 Identities=25% Similarity=0.529 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 034934 6 DEIIRRVAKQVL 17 (78)
Q Consensus 6 eel~~~~~~~L~ 17 (78)
+||++.+..+|.
T Consensus 14 qEIL~E~RkElq 25 (45)
T 1use_A 14 QELLEEVKKELQ 25 (45)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 72
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=43.67 E-value=9.2 Score=26.89 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=14.4
Q ss_pred CCCCCCCCEEEecccccc
Q 034934 53 DQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~~ 70 (78)
..+|..||+|.+||-+..
T Consensus 295 ~~~t~~~~Iya~GD~~~~ 312 (466)
T 3l8k_A 295 TMKTNIPNVFATGDANGL 312 (466)
T ss_dssp TCBCSSTTEEECGGGTCS
T ss_pred CccCCCCCEEEEEecCCC
Confidence 345789999999997753
No 73
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=43.56 E-value=9.3 Score=26.76 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=13.7
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 297 ~~t~~~~IyA~GD~~~ 312 (464)
T 2a8x_A 297 MRTNVGHIYAIGDVNG 312 (464)
T ss_dssp SBCSSTTEEECGGGGC
T ss_pred CccCCCCEEEeECcCC
Confidence 4688999999999875
No 74
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=43.16 E-value=11 Score=26.37 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=13.9
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 282 ~~t~~~~Iya~GD~~~ 297 (472)
T 3iwa_A 282 MRTSDPDIFAGGDCVT 297 (472)
T ss_dssp CBCSSTTEEECGGGEE
T ss_pred cccCCCCEEEecccee
Confidence 5688999999999875
No 75
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=43.15 E-value=12 Score=26.15 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=13.5
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 305 ~~t~~~~Iya~GD~~~ 320 (470)
T 1dxl_A 305 FSTNVSGVYAIGDVIP 320 (470)
T ss_dssp CBCSSTTEEECSTTSS
T ss_pred CccCCCCEEEEeccCC
Confidence 4578999999999765
No 76
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=42.64 E-value=12 Score=25.76 Aligned_cols=17 Identities=12% Similarity=-0.083 Sum_probs=14.4
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|..||+|.+||-+..
T Consensus 263 ~~t~~~~iya~GD~a~~ 279 (404)
T 3fg2_P 263 LLTSDPHISAIGDCALF 279 (404)
T ss_dssp SBCSSTTEEECGGGEEE
T ss_pred cccCCCCEEEeecceee
Confidence 46889999999998764
No 77
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=42.62 E-value=9.8 Score=26.90 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=14.1
Q ss_pred CCCCCCCCEEEeccccc
Q 034934 53 DQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~ 69 (78)
..+|..||+|.+||-+.
T Consensus 313 ~~~t~~~~Iya~GD~~~ 329 (484)
T 3o0h_A 313 KMTTNVSHIWAVGDVTG 329 (484)
T ss_dssp TSBCSSTTEEECGGGGT
T ss_pred CCCCCCCCEEEEEecCC
Confidence 34588999999999775
No 78
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=42.42 E-value=10 Score=25.96 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=14.3
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|..||+|.+||-+..
T Consensus 256 ~~t~~~~IyA~GD~a~~ 272 (367)
T 1xhc_A 256 FRTSAKDVYAIGDCAEY 272 (367)
T ss_dssp SBCSSTTEEECGGGEEB
T ss_pred cccCCCCEEEeEeeeec
Confidence 46889999999998764
No 79
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=42.39 E-value=9.9 Score=27.33 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=13.9
Q ss_pred CCCCCCCCEEEeccccc
Q 034934 53 DQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~ 69 (78)
..+|..||+|.+||-+.
T Consensus 341 ~~~Ts~~~IyA~GD~~~ 357 (519)
T 3qfa_A 341 EEQTNVPYIYAIGDILE 357 (519)
T ss_dssp TSBCSSTTEEECGGGBS
T ss_pred CCccCCCCEEEEEeccC
Confidence 34688999999999873
No 80
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=42.29 E-value=10 Score=26.40 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=14.2
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|..||+|.+||-+..
T Consensus 270 ~~t~~~~IyA~GD~~~~ 286 (452)
T 2cdu_A 270 MHSSNRDIFAAGDSAAV 286 (452)
T ss_dssp SBCSSTTEEECSTTBCE
T ss_pred cCcCCCCEEEcceEEEe
Confidence 45789999999998863
No 81
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=41.26 E-value=12 Score=25.74 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.3
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|..||+|.+||-+..
T Consensus 263 ~~t~~~~IyA~GD~a~~ 279 (410)
T 3ef6_A 263 GATLAKGVFAVGDVASW 279 (410)
T ss_dssp SBCSSTTEEECGGGEEE
T ss_pred eeECCCCEEEEEcceec
Confidence 36889999999998764
No 82
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=41.07 E-value=47 Score=24.45 Aligned_cols=52 Identities=10% Similarity=0.081 Sum_probs=27.2
Q ss_pred HHHHHHHHHCCCCCCCceeeEEEEEeCCceecCC-CCCCCCCCCCCC-CCCCEEEecccc
Q 034934 11 RVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEG-PGKDPFRRDQKT-PVKNFFLAGSYT 68 (78)
Q Consensus 11 ~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~-pg~~~~RP~~~T-~~~nL~lAGDwt 68 (78)
+.+..+.+..|.+....-+=..|.. + +++.. .-. -...+| .++|||.|||-.
T Consensus 465 e~~~~~~~~~~g~~~~~~~l~g~e~--~-~ssp~ri~~---~~~~~~~~~~gly~~Gega 518 (549)
T 3nlc_A 465 EAIPAFDRKIKGFASEDGLLTGVET--R-TSSPVCIKR---GKDFQSVNLKGFYPAGEGA 518 (549)
T ss_dssp HHHHHHHTTSTTTTCTTCEEEEEEC--C-SSCSEECCC---TTTTSCTTCBTEEECHHHH
T ss_pred HHHHHhhccCcCCCCCCcEEEEEee--c-cCCceeEEE---CCCceECCcCCEEEccccC
Confidence 3455566777875444322233322 3 22210 111 134456 799999999853
No 83
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=40.84 E-value=13 Score=25.67 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=14.8
Q ss_pred CCCCCCCEEEeccccccc
Q 034934 54 QKTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~~ 71 (78)
.+|..||+|.+||-+...
T Consensus 261 ~~t~~~~IyA~GD~~~~~ 278 (408)
T 2gqw_A 261 GRTTCPDVYALGDVTRQR 278 (408)
T ss_dssp CBCSSTTEEECGGGEEEE
T ss_pred CccCCCCEEEEEEEEEec
Confidence 368899999999987743
No 84
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=40.53 E-value=11 Score=26.64 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=13.5
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 310 ~~t~~~~IyA~GD~~~ 325 (479)
T 2hqm_A 310 QNTNVPNIYSLGDVVG 325 (479)
T ss_dssp CBCSSTTEEECGGGTT
T ss_pred CccCCCCEEEEEecCC
Confidence 4688999999999864
No 85
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=40.52 E-value=11 Score=26.40 Aligned_cols=16 Identities=13% Similarity=0.333 Sum_probs=13.7
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 302 ~~t~~~~IyA~GD~~~ 317 (468)
T 2qae_A 302 FETSIPDVYAIGDVVD 317 (468)
T ss_dssp SBCSSTTEEECGGGBS
T ss_pred cccCCCCEEEeeccCC
Confidence 4678999999999876
No 86
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=40.46 E-value=11 Score=26.95 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=14.2
Q ss_pred CCCCCCCCEEEeccccc
Q 034934 53 DQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~ 69 (78)
..+|..||+|.+||-+.
T Consensus 290 ~~~t~~~~IyA~GD~~~ 306 (565)
T 3ntd_A 290 MMQTSDPAIYAVGDAVE 306 (565)
T ss_dssp TCBCSSTTEEECGGGBC
T ss_pred CcccCCCCEEEeeeeEe
Confidence 35688999999999874
No 87
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=40.31 E-value=11 Score=26.33 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=13.6
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 291 ~~t~~~~IyA~GD~~~ 306 (450)
T 1ges_A 291 QNTNIEGIYAVGDNTG 306 (450)
T ss_dssp SBCSSTTEEECSGGGT
T ss_pred CccCCCCEEEEeccCC
Confidence 4688999999999865
No 88
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=40.21 E-value=11 Score=26.81 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=13.8
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..+|+|.+||-+.
T Consensus 405 ~~Ts~~~VfA~GD~~~ 420 (456)
T 2vdc_G 405 KMTNMDGVFAAGDIVR 420 (456)
T ss_dssp CBCSSTTEEECGGGGS
T ss_pred CcCCCCCEEEeccccC
Confidence 5688999999999865
No 89
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=39.67 E-value=12 Score=26.18 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=13.5
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 296 ~~t~~~~Iya~GD~~~ 311 (455)
T 1ebd_A 296 CRTSVPNIFAIGDIVP 311 (455)
T ss_dssp CBCSSTTEEECGGGSS
T ss_pred cccCCCCEEEEeccCC
Confidence 4578999999999875
No 90
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=39.39 E-value=12 Score=25.89 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=14.5
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|..||+|.+||-+..
T Consensus 253 ~~t~~~~IyA~GD~a~~ 269 (385)
T 3klj_A 253 METSIKDIYACGDVAEF 269 (385)
T ss_dssp CBCSSTTEEECGGGEEE
T ss_pred cccCCCCEEEEEeeEec
Confidence 46889999999998763
No 91
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=39.17 E-value=12 Score=26.11 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=14.4
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|..||+|.+||-+..
T Consensus 272 ~~ts~~~IyA~GD~~~~ 288 (431)
T 1q1r_A 272 MQTSDPLIMAVGDCARF 288 (431)
T ss_dssp SBCSSTTEEECGGGEEE
T ss_pred cccCCCCEEEEEeEEEE
Confidence 46889999999998764
No 92
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=39.00 E-value=12 Score=26.23 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=13.6
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 313 ~~t~~~~IyA~GD~~~ 328 (478)
T 1v59_A 313 FNSKFPHIKVVGDVTF 328 (478)
T ss_dssp SBCSSTTEEECGGGSS
T ss_pred CccCCCCEEEeeccCC
Confidence 4578999999999875
No 93
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=38.69 E-value=11 Score=28.54 Aligned_cols=16 Identities=13% Similarity=0.245 Sum_probs=13.8
Q ss_pred CCCCCCCCEEEecccc
Q 034934 53 DQKTPVKNFFLAGSYT 68 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt 68 (78)
..+|.+||||.|||-.
T Consensus 447 ~~~t~v~gl~a~Ge~~ 462 (662)
T 3gyx_A 447 NRMTTVEGLWTCADGV 462 (662)
T ss_dssp TTBCSSBTEECCSSSB
T ss_pred CCCCccCCeEeCcccc
Confidence 4579999999999965
No 94
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=38.67 E-value=12 Score=26.59 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=14.2
Q ss_pred CCCCCCCCEEEeccccc
Q 034934 53 DQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~ 69 (78)
..+|..||+|.+||-+.
T Consensus 300 ~~~t~~~~IyA~GD~~~ 316 (492)
T 3ic9_A 300 TLQTSVDHIFVAGDANN 316 (492)
T ss_dssp TCBCSSTTEEECGGGGT
T ss_pred cccCCCCCEEEEEecCC
Confidence 45688999999999775
No 95
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=38.60 E-value=11 Score=28.06 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=13.4
Q ss_pred CCCCCCEEEecccccc
Q 034934 55 KTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 55 ~T~~~nL~lAGDwt~~ 70 (78)
.|++||||-||+-...
T Consensus 428 ~t~I~GLyAaGe~a~~ 443 (643)
T 1jnr_A 428 MTTVKGLFAIGDCAGA 443 (643)
T ss_dssp BCSSBTEEECGGGBCS
T ss_pred CceeCCEEeeeccccc
Confidence 5899999999986544
No 96
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=38.43 E-value=12 Score=26.18 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=13.6
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 308 ~~t~~~~IyA~GD~~~ 323 (474)
T 1zmd_A 308 FQTKIPNIYAIGDVVA 323 (474)
T ss_dssp CBCSSTTEEECGGGSS
T ss_pred CccCCCCEEEeeecCC
Confidence 4588999999999765
No 97
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=38.30 E-value=12 Score=27.13 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=13.3
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-..
T Consensus 421 ~~ts~~~VyA~GD~~~ 436 (598)
T 2x8g_A 421 EQTTVSNVYAIGDINA 436 (598)
T ss_dssp SBCSSTTEEECGGGBT
T ss_pred CcCCCCCEEEEeeecC
Confidence 3688999999999843
No 98
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=37.80 E-value=18 Score=24.54 Aligned_cols=16 Identities=6% Similarity=0.096 Sum_probs=13.5
Q ss_pred CCCCCCEEEecccccc
Q 034934 55 KTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 55 ~T~~~nL~lAGDwt~~ 70 (78)
.|..||+|.+||-+..
T Consensus 283 ~t~~p~VfAiGDva~~ 298 (401)
T 3vrd_B 283 SSLQPGIHVIGDACNA 298 (401)
T ss_dssp BSSSTTEEECGGGBCC
T ss_pred ecCCCCEEEecccccC
Confidence 5789999999997753
No 99
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=37.78 E-value=13 Score=26.16 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=13.5
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 297 ~~t~~~~Iya~GD~~~ 312 (464)
T 2eq6_A 297 METSVPGVYAIGDAAR 312 (464)
T ss_dssp CBCSSTTEEECGGGTC
T ss_pred cccCCCCEEEEeccCC
Confidence 4678999999999874
No 100
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=37.77 E-value=16 Score=25.98 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=13.3
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 300 ~~t~~~~iya~GD~~~ 315 (500)
T 1onf_A 300 QRTSVNNIYAVGDCCM 315 (500)
T ss_dssp CBCSSSSEEECSTTEE
T ss_pred cccCCCCEEEEecccc
Confidence 3577899999999883
No 101
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=37.64 E-value=13 Score=26.93 Aligned_cols=17 Identities=12% Similarity=0.190 Sum_probs=14.4
Q ss_pred CCCCCCCCEEEeccccc
Q 034934 53 DQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~ 69 (78)
..+|..||+|.+||-+.
T Consensus 305 ~~~t~~~~IyA~GD~~~ 321 (588)
T 3ics_A 305 KFQTSDPHIYAIGDAIE 321 (588)
T ss_dssp TSBCSSTTEEECGGGBC
T ss_pred ccccCCCCEEEeeeeee
Confidence 45688999999999875
No 102
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=37.40 E-value=13 Score=26.20 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=13.8
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 312 ~~t~~~~IyA~GD~~~ 327 (482)
T 1ojt_A 312 MRTNVPHIYAIGDIVG 327 (482)
T ss_dssp SBCSSTTEEECGGGTC
T ss_pred cccCCCCEEEEEcccC
Confidence 4678999999999875
No 103
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=36.99 E-value=17 Score=26.65 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=14.5
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|..||+|-+||-+..
T Consensus 346 ~~Ts~p~IyAiGDv~~~ 362 (542)
T 4b1b_A 346 SCTNIPSIFAVGDVAEN 362 (542)
T ss_dssp SBCSSTTEEECTTSBTT
T ss_pred ccccCCCeEEeccccCC
Confidence 46999999999998754
No 104
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=36.74 E-value=22 Score=24.24 Aligned_cols=18 Identities=11% Similarity=0.228 Sum_probs=14.2
Q ss_pred CCCC-CCCCEEEecccccc
Q 034934 53 DQKT-PVKNFFLAGSYTKQ 70 (78)
Q Consensus 53 ~~~T-~~~nL~lAGDwt~~ 70 (78)
..+| ..||+|.+||-+..
T Consensus 293 ~~~~~~~~~vfa~GD~~~~ 311 (409)
T 3h8l_A 293 NMVSIKYDNVYAVGDANSM 311 (409)
T ss_dssp TSBBSSCTTEEECGGGBTT
T ss_pred ccccCCCCCEEEeehhccC
Confidence 3345 78999999998863
No 105
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=36.41 E-value=14 Score=26.10 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=13.9
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|..||+|.+||-+..
T Consensus 306 ~~ts~p~IyA~GD~~~~ 322 (480)
T 3cgb_A 306 MQTNVQDVYAAGDCATH 322 (480)
T ss_dssp SBCSSTTEEECGGGBCE
T ss_pred ccCCCCCEEEeeeEEEe
Confidence 36788999999998753
No 106
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=36.20 E-value=14 Score=26.13 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=13.7
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 305 ~~t~~~~IyA~GD~~~ 320 (499)
T 1xdi_A 305 SRTLATGIYAAGDCTG 320 (499)
T ss_dssp SBCSSTTEEECSGGGT
T ss_pred cccCCCCEEEEeccCC
Confidence 4678999999999875
No 107
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=35.95 E-value=18 Score=25.03 Aligned_cols=18 Identities=28% Similarity=0.200 Sum_probs=14.3
Q ss_pred CCC-CCCCEEEeccccccc
Q 034934 54 QKT-PVKNFFLAGSYTKQY 71 (78)
Q Consensus 54 ~~T-~~~nL~lAGDwt~~~ 71 (78)
.+| ..||+|.+||-+...
T Consensus 281 l~t~~~~~Ifa~GD~~~~~ 299 (430)
T 3h28_A 281 FQNPTYKNIFGVGVVTAIP 299 (430)
T ss_dssp SBCSSSTTEEECSTTBCCC
T ss_pred ccCCCCCCEEEEEeeeccC
Confidence 345 899999999988743
No 108
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=35.76 E-value=15 Score=25.93 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.4
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 290 ~~t~~~~Iya~GD~~~ 305 (463)
T 2r9z_A 290 QNTNVPGVYALGDITG 305 (463)
T ss_dssp SBCSSTTEEECGGGGT
T ss_pred CccCCCCEEEEeecCC
Confidence 3578999999999865
No 109
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=35.62 E-value=15 Score=26.07 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=14.0
Q ss_pred CCCCCCCEEEecccccc
Q 034934 54 QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~~ 70 (78)
.+|..||+|.+||-+..
T Consensus 314 ~~t~~~~IyA~GD~~~~ 330 (490)
T 2bc0_A 314 QETSIPGVYAIGDCATI 330 (490)
T ss_dssp CBCSSTTEEECGGGBCE
T ss_pred cccCCCCEEEeeeeEEe
Confidence 46788999999998763
No 110
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=35.01 E-value=16 Score=27.57 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=13.9
Q ss_pred CCCCCCCCCEEEecccc
Q 034934 52 RDQKTPVKNFFLAGSYT 68 (78)
Q Consensus 52 P~~~T~~~nL~lAGDwt 68 (78)
...+|++||||-||+-.
T Consensus 379 ~~~~v~IpGLYAaGE~a 395 (660)
T 2bs2_A 379 YRGEAKLKGLFSAGEAA 395 (660)
T ss_dssp TTSBCSSBTEEECGGGE
T ss_pred CCCceecCCEEeccccc
Confidence 45567999999999964
No 111
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=34.33 E-value=16 Score=26.07 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=13.8
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..+|+|.+||-+.
T Consensus 318 ~~t~~~~IyA~GD~~~ 333 (495)
T 2wpf_A 318 SRTNVPNIYAIGDITD 333 (495)
T ss_dssp CBCSSTTEEECGGGGC
T ss_pred CccCCCCEEEEeccCC
Confidence 4688999999999875
No 112
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=34.17 E-value=16 Score=25.97 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=13.8
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 314 ~~t~~~~IyA~GD~~~ 329 (490)
T 1fec_A 314 SKTNVDNIYAIGDVTD 329 (490)
T ss_dssp CBCSSTTEEECGGGGC
T ss_pred CccCCCCEEEEeccCC
Confidence 4688999999999875
No 113
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=34.10 E-value=16 Score=25.38 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=13.7
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 269 ~~t~~~~Iya~GD~~~ 284 (447)
T 1nhp_A 269 MRTSEPDVFAVGDATL 284 (447)
T ss_dssp CBCSSTTEEECGGGSC
T ss_pred ccCCCCCEEEeeeEEE
Confidence 4678899999999876
No 114
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=33.95 E-value=12 Score=27.24 Aligned_cols=14 Identities=29% Similarity=0.636 Sum_probs=12.3
Q ss_pred CCCCCEEEeccccc
Q 034934 56 TPVKNFFLAGSYTK 69 (78)
Q Consensus 56 T~~~nL~lAGDwt~ 69 (78)
|+|||||.||.-+.
T Consensus 525 ~~I~GLyAaGe~~~ 538 (572)
T 1d4d_A 525 KPITGLYAAGEVTG 538 (572)
T ss_dssp SEEEEEEECSTTEE
T ss_pred cccCCeeECeeccc
Confidence 89999999998764
No 115
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=33.91 E-value=12 Score=27.07 Aligned_cols=14 Identities=36% Similarity=0.691 Sum_probs=12.3
Q ss_pred CCCCCEEEeccccc
Q 034934 56 TPVKNFFLAGSYTK 69 (78)
Q Consensus 56 T~~~nL~lAGDwt~ 69 (78)
|+|||||.||+-+.
T Consensus 519 ~~I~GLyAaGe~~~ 532 (566)
T 1qo8_A 519 KPIDGLFAAGEVTG 532 (566)
T ss_dssp CEEEEEEECSTTBC
T ss_pred CEeCCEEecccccC
Confidence 79999999998764
No 116
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=33.89 E-value=20 Score=25.01 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=13.6
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 297 ~~t~~~~iya~GD~~~ 312 (467)
T 1zk7_A 297 MRTSNPNIYAAGDCTD 312 (467)
T ss_dssp CBCSSTTEEECSTTBS
T ss_pred cccCCCCEEEEeccCC
Confidence 4578999999999765
No 117
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=33.73 E-value=18 Score=25.05 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=14.8
Q ss_pred CCCC-CCCCEEEeccccccc
Q 034934 53 DQKT-PVKNFFLAGSYTKQY 71 (78)
Q Consensus 53 ~~~T-~~~nL~lAGDwt~~~ 71 (78)
..+| ..||+|.+||-+...
T Consensus 291 ~l~t~~~~~Ifa~GD~~~~~ 310 (437)
T 3sx6_A 291 HQRSKKYANIFAAGIAIAIP 310 (437)
T ss_dssp TSBBSSCTTEEECGGGBCCC
T ss_pred hccCCCCCCEEEEEEEeccC
Confidence 3455 799999999988743
No 118
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=33.48 E-value=17 Score=25.53 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=13.4
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 293 ~~t~~~~Iya~GD~~~ 308 (458)
T 1lvl_A 293 CQTSMHNVWAIGDVAG 308 (458)
T ss_dssp CBCSSTTEEECGGGGC
T ss_pred CcCCCCCEEEeeccCC
Confidence 4578899999999765
No 119
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=33.20 E-value=12 Score=27.08 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=12.4
Q ss_pred CCCCCEEEeccccc
Q 034934 56 TPVKNFFLAGSYTK 69 (78)
Q Consensus 56 T~~~nL~lAGDwt~ 69 (78)
|+|||||.||+-+.
T Consensus 524 ~~I~GLyAaGe~~~ 537 (571)
T 1y0p_A 524 QVIPGLYGAGEVTG 537 (571)
T ss_dssp CEEEEEEECSTTEE
T ss_pred CCcCCcEeceEcCC
Confidence 79999999998765
No 120
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=33.04 E-value=85 Score=21.30 Aligned_cols=55 Identities=13% Similarity=0.215 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCC--CCCCCCCCEEEeccc
Q 034934 5 NDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRR--DQKTPVKNFFLAGSY 67 (78)
Q Consensus 5 ~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP--~~~T~~~nL~lAGDw 67 (78)
.++..+.+.+.+.+++|......+...+.- ....+|.. .| +.....+|||+|.-+
T Consensus 306 ~~~~~~~l~~~~~~~~P~l~~~~~~~~~~g-----~~~~t~D~---~piig~~p~~~~l~~a~G~ 362 (438)
T 3dje_A 306 PKEAETRVRALLKETMPQLADRPFSFARIC-----WCADTANR---EFLIDRHPQYHSLVLGCGA 362 (438)
T ss_dssp BHHHHHHHHHHHHHHCGGGTTCCCSEEEEE-----EEEECTTS---CCEEEECSSCTTEEEEECC
T ss_pred CHHHHHHHHHHHHHhCcccccCCcceeeEE-----EeCcCCCC---CeEEeecCCCCCEEEEECC
Confidence 356678889999999998655555433322 12234432 22 112236899998644
No 121
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=32.96 E-value=17 Score=26.04 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=13.7
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..||+|.+||-+.
T Consensus 341 ~~t~~~~IyA~GD~~~ 356 (523)
T 1mo9_A 341 LQTSVPNVYAVGDLIG 356 (523)
T ss_dssp SBCSSTTEEECGGGGC
T ss_pred CccCCCCEEEEeecCC
Confidence 4588999999999875
No 122
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=31.79 E-value=19 Score=24.97 Aligned_cols=14 Identities=36% Similarity=0.392 Sum_probs=12.7
Q ss_pred CCCCCEEEeccccc
Q 034934 56 TPVKNFFLAGSYTK 69 (78)
Q Consensus 56 T~~~nL~lAGDwt~ 69 (78)
|..||+|.+||-+.
T Consensus 284 t~~~~IfAiGD~a~ 297 (430)
T 3hyw_A 284 PTYKNIFGVGVVTA 297 (430)
T ss_dssp SSSTTEEECSTTBC
T ss_pred CCCCCEEEeccEEe
Confidence 78999999999876
No 123
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=31.54 E-value=23 Score=24.77 Aligned_cols=15 Identities=7% Similarity=0.226 Sum_probs=12.5
Q ss_pred CCCCCEEEecccccc
Q 034934 56 TPVKNFFLAGSYTKQ 70 (78)
Q Consensus 56 T~~~nL~lAGDwt~~ 70 (78)
.++||||.||.-++-
T Consensus 402 ~~i~GLy~aGEv~~v 416 (447)
T 2i0z_A 402 KFTNGLYFCGEVLDI 416 (447)
T ss_dssp SSSBTEEECGGGBSC
T ss_pred CcCCCEEEEEeeccC
Confidence 479999999987763
No 124
>3u21_A Nuclear factor related to kappa-B-binding protein; DNA/RNA-binding 3-helical bundle, winged-HTH domain, structu genomics; HET: MSE MLY; 2.18A {Homo sapiens}
Probab=31.10 E-value=7.7 Score=23.89 Aligned_cols=14 Identities=36% Similarity=0.536 Sum_probs=10.2
Q ss_pred EEecccccccccCCcc
Q 034934 62 FLAGSYTKQYGRSNFV 77 (78)
Q Consensus 62 ~lAGDwt~~~~~~~~~ 77 (78)
|||||.... |++||
T Consensus 65 FLaGe~~~l--p~~fv 78 (127)
T 3u21_A 65 YLAGESRAV--PSSFS 78 (127)
T ss_dssp HHTTCSSCS--CTTCC
T ss_pred HhcCCCCCC--CCCCc
Confidence 788888754 67765
No 125
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=31.00 E-value=47 Score=20.00 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=18.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCC
Q 034934 2 PLPNDEIIRRVAKQVLALFPS 22 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~ 22 (78)
+++-+++.+.+.+.|++++|-
T Consensus 3 ~~sldevL~~v~~~l~~~~~~ 23 (165)
T 3o5y_A 3 AMSLDDIINNMIDKLKLLVHF 23 (165)
T ss_dssp -CCHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHhcCc
Confidence 578899999999999999984
No 126
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=27.88 E-value=40 Score=23.43 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=13.2
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..+|+|.+||-+.
T Consensus 290 ~~t~~~~iya~GD~~~ 305 (455)
T 2yqu_A 290 LRTRVPHIYAIGDVVR 305 (455)
T ss_dssp SBCSSTTEEECGGGSS
T ss_pred cccCCCCEEEEecCCC
Confidence 4577899999999765
No 127
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=26.98 E-value=20 Score=25.57 Aligned_cols=14 Identities=36% Similarity=0.693 Sum_probs=12.1
Q ss_pred CCCCCEEEeccccc
Q 034934 56 TPVKNFFLAGSYTK 69 (78)
Q Consensus 56 T~~~nL~lAGDwt~ 69 (78)
++|||||-||.-+.
T Consensus 466 ~~I~GLyAaGe~~g 479 (510)
T 4at0_A 466 EPIPGLFAAGRCTS 479 (510)
T ss_dssp SEEEEEEECGGGBC
T ss_pred CCcCCeeeceeccc
Confidence 79999999997664
No 128
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=25.62 E-value=76 Score=16.25 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHHHHHHCC
Q 034934 1 MPLPNDEIIRRVAKQVLALFP 21 (78)
Q Consensus 1 ~~~~~eel~~~~~~~L~~~~P 21 (78)
|.|+++++.+.+.+-+.+.+.
T Consensus 1 m~m~~~~i~~~l~~~i~~~l~ 21 (82)
T 2cnr_A 1 MAATQEEIVAGLAEIVNEIAG 21 (82)
T ss_dssp CCCCHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 578899999999999988885
No 129
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=25.40 E-value=29 Score=24.44 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=11.1
Q ss_pred CCCCCEEEecccc
Q 034934 56 TPVKNFFLAGSYT 68 (78)
Q Consensus 56 T~~~nL~lAGDwt 68 (78)
|..||||.+||-.
T Consensus 305 t~~p~i~aiGd~~ 317 (464)
T 2xve_A 305 EDNPKFFYIGMQD 317 (464)
T ss_dssp SSSTTEEECSCSC
T ss_pred CCCCCEEEEeCcc
Confidence 7789999999944
No 130
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=25.39 E-value=24 Score=24.96 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=11.9
Q ss_pred CCCCCEEEeccccc
Q 034934 56 TPVKNFFLAGSYTK 69 (78)
Q Consensus 56 T~~~nL~lAGDwt~ 69 (78)
|..||+|.|||-..
T Consensus 349 t~~pgvya~GD~~~ 362 (456)
T 1lqt_A 349 NGSPNEYVVGWIKR 362 (456)
T ss_dssp TTCSSEEECTHHHH
T ss_pred CCCCCEEEEeccCC
Confidence 67899999998764
No 131
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=23.42 E-value=13 Score=27.75 Aligned_cols=14 Identities=14% Similarity=0.325 Sum_probs=12.1
Q ss_pred CCCCCCEEEecccc
Q 034934 55 KTPVKNFFLAGSYT 68 (78)
Q Consensus 55 ~T~~~nL~lAGDwt 68 (78)
.|++||||.||+-.
T Consensus 386 ~t~IpGLyAaGE~a 399 (621)
T 2h88_A 386 DKVVPGLYACGEAA 399 (621)
T ss_dssp EEEEEEEEECGGGE
T ss_pred CcccCceEEccccc
Confidence 47899999999964
No 132
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=22.45 E-value=34 Score=26.98 Aligned_cols=16 Identities=19% Similarity=0.189 Sum_probs=13.8
Q ss_pred CCCCCCCEEEeccccc
Q 034934 54 QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 54 ~~T~~~nL~lAGDwt~ 69 (78)
.+|..+|+|.+||-+.
T Consensus 469 ~~Ts~~~VfA~GD~~~ 484 (1025)
T 1gte_A 469 MQTSEPWVFAGGDIVG 484 (1025)
T ss_dssp CBCSSTTEEECSGGGC
T ss_pred CccCCCCEEEeCCCCC
Confidence 4688999999999875
No 133
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=20.58 E-value=31 Score=25.99 Aligned_cols=15 Identities=20% Similarity=0.476 Sum_probs=12.5
Q ss_pred CCCCCCEEEeccccc
Q 034934 55 KTPVKNFFLAGSYTK 69 (78)
Q Consensus 55 ~T~~~nL~lAGDwt~ 69 (78)
+|.++|+|.+||-+.
T Consensus 663 ~t~~~~VyAiGD~~~ 677 (729)
T 1o94_A 663 ENDIKGIYLIGDAEA 677 (729)
T ss_dssp GGTCCEEEECGGGTS
T ss_pred ccCCCCeEEEeCccc
Confidence 468899999999764
No 134
>2g7o_A Protein TRAM; four helix bundle, tetramer, DNA binding protein; 1.40A {Escherichia coli} SCOP: a.241.1.1 PDB: 3d8a_A 2g9e_A
Probab=20.30 E-value=1.2e+02 Score=16.59 Aligned_cols=18 Identities=22% Similarity=0.597 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHCCCC
Q 034934 6 DEIIRRVAKQVLALFPSS 23 (78)
Q Consensus 6 eel~~~~~~~L~~~~P~~ 23 (78)
++|.+.+.+++.++||+.
T Consensus 50 ~~Ir~~~~e~~~~FFpe~ 67 (70)
T 2g7o_A 50 EDIREKVSSEMERFFPKN 67 (70)
T ss_dssp HHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHHHhCccc
Confidence 467778888999999963
Done!