BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034937
(78 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HJ3|A Chain A, Structure Of The Arabidopsis Thaliana Erv1 Thiol Oxidase
pdb|2HJ3|B Chain B, Structure Of The Arabidopsis Thaliana Erv1 Thiol Oxidase
Length = 125
Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/79 (74%), Positives = 65/79 (82%), Gaps = 8/79 (10%)
Query: 1 MAILSRM--------HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVD 52
M ILSRM HFKE+LR+NP QA S +EFSQWLCHVHN VNRSLGKLVFPCERVD
Sbjct: 44 MTILSRMYPCRECADHFKEILRSNPAQAGSQEEFSQWLCHVHNTVNRSLGKLVFPCERVD 103
Query: 53 ARWGKLECEQRACDLQGTT 71
ARWGKLECEQ++CDL GT+
Sbjct: 104 ARWGKLECEQKSCDLHGTS 122
>pdb|3R7C|A Chain A, The Structure Of A Hexahestidine-Tagged Form Of Augmenter
Of Liver Regeneration Reveals A Novel Cd(2)cl(4)o(6)
Cluster That Aids In Crystal Packing
pdb|3R7C|B Chain B, The Structure Of A Hexahestidine-Tagged Form Of Augmenter
Of Liver Regeneration Reveals A Novel Cd(2)cl(4)o(6)
Cluster That Aids In Crystal Packing
pdb|3R7C|C Chain C, The Structure Of A Hexahestidine-Tagged Form Of Augmenter
Of Liver Regeneration Reveals A Novel Cd(2)cl(4)o(6)
Cluster That Aids In Crystal Packing
pdb|3R7C|D Chain D, The Structure Of A Hexahestidine-Tagged Form Of Augmenter
Of Liver Regeneration Reveals A Novel Cd(2)cl(4)o(6)
Cluster That Aids In Crystal Packing
Length = 139
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 10 KEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
K + R+ P + FSQWLC +HN VNR LGK F C RVD RW
Sbjct: 85 KRIDRSQP-DTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERW 129
>pdb|3MBG|A Chain A, Crystal Structure Of Human Augmenter Of Liver Regeneration
(Alr)
pdb|3MBG|B Chain B, Crystal Structure Of Human Augmenter Of Liver Regeneration
(Alr)
pdb|3MBG|C Chain C, Crystal Structure Of Human Augmenter Of Liver Regeneration
(Alr)
Length = 139
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 9 FKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
++ L N + F+QWLCH+HN VNR LGK F C +VD RW
Sbjct: 83 LRKRLARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERW 129
>pdb|1OQC|A Chain A, The Crystal Structure Of Augmenter Of Liver Regeneration:
A Mammalian Fad Dependent Sulfhydryl Oxidase
pdb|1OQC|B Chain B, The Crystal Structure Of Augmenter Of Liver Regeneration:
A Mammalian Fad Dependent Sulfhydryl Oxidase
pdb|1OQC|C Chain C, The Crystal Structure Of Augmenter Of Liver Regeneration:
A Mammalian Fad Dependent Sulfhydryl Oxidase
pdb|1OQC|D Chain D, The Crystal Structure Of Augmenter Of Liver Regeneration:
A Mammalian Fad Dependent Sulfhydryl Oxidase
Length = 125
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 10 KEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
K + R+ P + FSQWLC +HN VNR LGK F C RVD RW
Sbjct: 71 KRIDRSQP-DTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERW 115
>pdb|3TK0|A Chain A, Mutation Of Sfalr
Length = 126
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 23/30 (76%)
Query: 26 FSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
F+QWLCH+HN VNR LGK F C +VD RW
Sbjct: 87 FTQWLCHLHNEVNRKLGKPDFDCSKVDERW 116
>pdb|3O55|A Chain A, Crystal Structure Of Human Fad-Linked Augmenter Of Liver
Regeneration (Alr)
Length = 125
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 9 FKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
++ L N + F+QWLCH+HN VNR LGK F C +VD RW
Sbjct: 69 LRKRLARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERW 115
>pdb|3U2M|A Chain A, Crystal Structure Of Human Alr Mutant C142145S
Length = 115
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 23/30 (76%)
Query: 26 FSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
F+QWLCH+HN VNR LGK F C +VD RW
Sbjct: 76 FTQWLCHLHNEVNRKLGKPDFDCSKVDERW 105
>pdb|3U2L|A Chain A, Crystal Structure Of Human Alr Mutant C142s
Length = 115
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 23/30 (76%)
Query: 26 FSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
F+QWLCH+HN VNR LGK F C +VD RW
Sbjct: 76 FTQWLCHLHNEVNRKLGKPDFDCSKVDERW 105
>pdb|4E0I|A Chain A, Crystal Structure Of The C30s/c133s Mutant Of Erv1 From
Saccharomyces Cerevisiae
pdb|4E0I|B Chain B, Crystal Structure Of The C30s/c133s Mutant Of Erv1 From
Saccharomyces Cerevisiae
pdb|4E0I|C Chain C, Crystal Structure Of The C30s/c133s Mutant Of Erv1 From
Saccharomyces Cerevisiae
Length = 189
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 5 SRMHFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
S F++ +R N Q ES +E +W+C HN VN+ L K F C + RW
Sbjct: 133 SAKDFEKYIRENAPQVESREELGRWMCEAHNKVNKKLRKPKFDCNFWEKRW 183
>pdb|4E0H|A Chain A, Crystal Structure Of Fad Binding Domain Of Erv1 From
Saccharomyces Cerevisiae
Length = 106
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 9 FKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
F++ +R N Q ES +E +W+C HN VN+ L K F C + RW
Sbjct: 54 FEKYIRENAPQVESREELGRWMCEAHNKVNKKLRKPKFDCNFWEKRW 100
>pdb|3U5S|A Chain A, Selenium Substituted Human Augmenter Of Liver Regeneration
Length = 126
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 26 FSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
F+QWL H+HN VNR LGK F +VD RW
Sbjct: 87 FTQWLXHLHNEVNRKLGKPDFDXSKVDERW 116
>pdb|1JR8|A Chain A, Crystal Structure Of Erv2p
pdb|1JR8|B Chain B, Crystal Structure Of Erv2p
pdb|1JRA|A Chain A, Crystal Structure Of Erv2p
pdb|1JRA|B Chain B, Crystal Structure Of Erv2p
pdb|1JRA|C Chain C, Crystal Structure Of Erv2p
pdb|1JRA|D Chain D, Crystal Structure Of Erv2p
Length = 117
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 7 MHFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERV 51
HF +++ PVQ S + W CH+HN VN L K ++ C +
Sbjct: 56 YHFVKLIEKYPVQTSSRTAAAMWGCHIHNKVNEYLKKDIYDCATI 100
>pdb|3GWL|A Chain A, Crystal Structure Of Asfv Pb119l, A Viral Sulfhydryl
Oxidase
pdb|3GWL|B Chain B, Crystal Structure Of Asfv Pb119l, A Viral Sulfhydryl
Oxidase
Length = 106
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 8 HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLV 45
H L NP+ + ++F W HN VN L K +
Sbjct: 53 HAFSYLTKNPLTLNNSEDFQYWTFAFHNNVNNRLNKKI 90
>pdb|4H8S|A Chain A, Crystal Structure Of Human Appl2barph Domain
pdb|4H8S|B Chain B, Crystal Structure Of Human Appl2barph Domain
pdb|4H8S|C Chain C, Crystal Structure Of Human Appl2barph Domain
pdb|4H8S|D Chain D, Crystal Structure Of Human Appl2barph Domain
Length = 407
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 18 VQAESHDEFSQWLCHVHNV 36
+QAES E +W+C ++N+
Sbjct: 378 LQAESRKENEEWICAINNI 396
>pdb|2Z0O|A Chain A, Crystal Structure Of Appl1-Bar-Ph Domain
Length = 387
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 14 RANPVQAESHDEFSQWLCHVHNV 36
+++ +QAES + +W+C ++N+
Sbjct: 353 KSSILQAESKKDHEEWICTINNI 375
>pdb|2ELB|A Chain A, Crystal Structure Of The Bar-Ph Domain Of Human Appl1
Length = 396
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 14 RANPVQAESHDEFSQWLCHVHNV 36
+++ +QAES + +W+C ++N+
Sbjct: 371 KSSILQAESKKDHEEWICTINNI 393
>pdb|2Q13|A Chain A, Crystal Structure Of Bar-Ph Domain Of Appl1
Length = 385
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 14 RANPVQAESHDEFSQWLCHVHNV 36
+++ +QAES + +W+C ++N+
Sbjct: 351 KSSILQAESKKDHEEWICTINNI 373
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.134 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,251,790
Number of Sequences: 62578
Number of extensions: 70725
Number of successful extensions: 146
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 127
Number of HSP's gapped (non-prelim): 21
length of query: 78
length of database: 14,973,337
effective HSP length: 47
effective length of query: 31
effective length of database: 12,032,171
effective search space: 372997301
effective search space used: 372997301
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)