Query 034937
Match_columns 78
No_of_seqs 102 out of 317
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 12:45:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hj3_A Sulfhydryl oxidase ERV1 100.0 3.5E-31 1.2E-35 178.4 4.7 64 8-71 59-122 (125)
2 3u5s_A FAD-linked sulfhydryl o 99.9 1.6E-28 5.3E-33 165.5 6.0 58 8-66 69-126 (126)
3 1jr8_A ERV2 protein, mitochond 99.9 2.3E-25 7.8E-30 148.5 5.2 54 8-61 57-110 (117)
4 4e0h_A Mitochondrial FAD-linke 99.9 8.2E-25 2.8E-29 142.6 5.6 54 8-61 53-106 (106)
5 3gwl_A P14, FAD-linked sulfhyd 99.9 2E-24 6.9E-29 141.6 4.8 50 8-57 53-102 (106)
6 4e0i_A Mitochondrial FAD-linke 99.9 1.3E-23 4.6E-28 149.9 5.6 54 8-61 136-189 (189)
7 3gwn_A Probable FAD-linked sul 99.8 4.7E-21 1.6E-25 126.8 2.3 51 8-58 55-111 (114)
8 3t58_A Sulfhydryl oxidase 1; o 99.3 3.4E-13 1.1E-17 105.7 3.7 54 8-61 427-485 (519)
9 3td7_A FAD-linked sulfhydryl o 99.3 3.1E-13 1E-17 102.5 2.5 50 8-57 89-144 (295)
10 3llk_A Sulfhydryl oxidase 1; d 99.3 8.4E-13 2.9E-17 98.1 3.7 54 8-61 170-228 (261)
11 3qcp_A QSOX from trypanosoma b 99.0 7.2E-11 2.4E-15 92.9 -0.1 48 8-61 341-394 (470)
12 1x05_A Pleckstrin; PH domain, 21.9 69 0.0024 18.8 2.6 28 18-45 100-127 (129)
13 2ajj_A NS5A, nonstructural pro 21.8 25 0.00085 17.9 0.4 15 29-43 8-22 (28)
14 3atr_A Conserved archaeal prot 21.6 84 0.0029 22.7 3.4 30 8-40 419-448 (453)
No 1
>2hj3_A Sulfhydryl oxidase ERV1P; four-helix bundle, flavin adenine dinucleotide, oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana}
Probab=99.96 E-value=3.5e-31 Score=178.43 Aligned_cols=64 Identities=83% Similarity=1.503 Sum_probs=48.9
Q ss_pred hHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCchhHHhhhccCccCCCcccCCCCC
Q 034937 8 HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLECEQRACDLQGTT 71 (78)
Q Consensus 8 ~f~~~l~~~PP~v~SR~~ls~WlC~~HN~VN~kLGKp~FdCs~v~eRW~~~~~~~~~cd~~~~~ 71 (78)
||+++++++||+|+||++|++|||++||.||+|||||+|||+.|.|||+.||+|+|||||+|.+
T Consensus 59 hF~~~~~~~p~~v~sr~~~~lWLw~~HN~VN~rL~Kp~f~c~~~~~rw~~g~~d~~~c~~~~~~ 122 (125)
T 2hj3_A 59 HFKEILRSNPAQAGSQEEFSQWLCHVHNTVNRSLGKLVFPCERVDARWGKLECEQKSCDLHGTS 122 (125)
T ss_dssp HHHHHHHHSCCCCSSHHHHHHHHHHHHHHHHHHTTCCCCCTTSHHHHCC---------------
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHhccCCCCCCCcCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999998864
No 2
>3u5s_A FAD-linked sulfhydryl oxidase ALR; flavin, liver, oxidoreductase; HET: FAD; 1.50A {Homo sapiens} PDB: 3mbg_A* 3tk0_A* 3o55_A* 3u2m_A* 3u2l_A* 3r7c_A* 1oqc_A*
Probab=99.95 E-value=1.6e-28 Score=165.49 Aligned_cols=58 Identities=36% Similarity=0.624 Sum_probs=56.7
Q ss_pred hHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCchhHHhhhccCccCCCccc
Q 034937 8 HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLECEQRACD 66 (78)
Q Consensus 8 ~f~~~l~~~PP~v~SR~~ls~WlC~~HN~VN~kLGKp~FdCs~v~eRW~~~~~~~~~cd 66 (78)
||+++|+++||+++||++|++|||++||.||++||||+|||+.|.|||++|+.| ||||
T Consensus 69 hf~~~l~~~pp~l~SR~~l~~Wl~~~HN~VN~rLgKp~fd~~~~~ery~~g~~d-g~~d 126 (126)
T 3u5s_A 69 DLRKRLARNHPDTRTRAAFTQWLXHLHNEVNRKLGKPDFDXSKVDERWRDGWKD-GSXD 126 (126)
T ss_dssp HHHHHHHHSCCCCSSHHHHHHHHHHHHHHHHHHTTCCCCCGGGHHHHHTTCCTT-STTC
T ss_pred HHHHHHHHCccccCCHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHccCCCC-CCCC
Confidence 999999999999999999999999999999999999999999999999999775 9998
No 3
>1jr8_A ERV2 protein, mitochondrial; FAD, sulfhydryl oxidase, helical bundle, CXXC, oxidoreductase; HET: FAD; 1.50A {Saccharomyces cerevisiae} SCOP: a.24.15.1 PDB: 1jra_A*
Probab=99.91 E-value=2.3e-25 Score=148.45 Aligned_cols=54 Identities=30% Similarity=0.565 Sum_probs=51.5
Q ss_pred hHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCchhHHhhhccCccC
Q 034937 8 HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLECE 61 (78)
Q Consensus 8 ~f~~~l~~~PP~v~SR~~ls~WlC~~HN~VN~kLGKp~FdCs~v~eRW~~~~~~ 61 (78)
||+++++++||+|+||++|++|||++||.||++||||+|||+.|.|||++|+.+
T Consensus 57 hF~~~~~~~p~~v~sr~~~~lWLw~~HN~VN~rL~kp~f~c~~~~er~~~g~~~ 110 (117)
T 1jr8_A 57 HFVKLIEKYPVQTSSRTAAAMWGCHIHNKVNEYLKKDIYDCATILEDYDCGCSD 110 (117)
T ss_dssp HHHHHHHHSCCCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCTTHHHHTCCCC--
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999999999999999999776
No 4
>4e0h_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; four-helix bundle, flavin-linked sulfhydryl oxidase, FAD BIN oxidation; HET: FAD; 2.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=8.2e-25 Score=142.59 Aligned_cols=54 Identities=37% Similarity=0.694 Sum_probs=52.1
Q ss_pred hHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCchhHHhhhccCccC
Q 034937 8 HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLECE 61 (78)
Q Consensus 8 ~f~~~l~~~PP~v~SR~~ls~WlC~~HN~VN~kLGKp~FdCs~v~eRW~~~~~~ 61 (78)
||+++++++||+++||++|++|+|.+||.||++||||+|||+.+.+||++|+.|
T Consensus 53 hf~~~l~~~p~~~~sr~~l~~Wl~~~HN~VN~rLgKp~f~~~~~~~ry~~g~~d 106 (106)
T 4e0h_A 53 DFEKYIRENAPQVESREELGRWMCEAHNKVNKKLRKPKFDCNFWEKRWKDGWDE 106 (106)
T ss_dssp HHHHHHHHSCCCCSSHHHHHHHHHHHHHHHHHHTTCCCCCGGGHHHHHTSCCC-
T ss_pred HHHHHHHHCCCccCCHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999764
No 5
>3gwl_A P14, FAD-linked sulfhydryl oxidase; homodimer, five-helix bundle, cytoplasm, disulfide bond, flavoprotein, late protein; HET: FAD; 2.10A {African swine fever virus BA71V}
Probab=99.90 E-value=2e-24 Score=141.65 Aligned_cols=50 Identities=24% Similarity=0.433 Sum_probs=49.0
Q ss_pred hHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCchhHHhhhcc
Q 034937 8 HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGK 57 (78)
Q Consensus 8 ~f~~~l~~~PP~v~SR~~ls~WlC~~HN~VN~kLGKp~FdCs~v~eRW~~ 57 (78)
||+++++++||++.||.++++|||++||+||++||||+|||+.|.|||+.
T Consensus 53 hf~~~~~~~p~~~~s~~~~~lWlc~~HN~VN~rLgKp~fdc~~~~e~y~~ 102 (106)
T 3gwl_A 53 HAFSYLTKNPLTLNNSEDFQYWTFAFHNNVNNRLNKKIISWSEYKNIYEQ 102 (106)
T ss_dssp HHHHHHHHSCCCCSSHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHTT
T ss_pred HHHHHHHhCCCCccChHHHHHHHHHHHhHHHHhhCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999985
No 6
>4e0i_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; flavin-linked sulfhydryl oxidase, MIA40, oxidation, mitochon intermembrane space; HET: FAD; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.3e-23 Score=149.95 Aligned_cols=54 Identities=37% Similarity=0.694 Sum_probs=52.1
Q ss_pred hHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCchhHHhhhccCccC
Q 034937 8 HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLECE 61 (78)
Q Consensus 8 ~f~~~l~~~PP~v~SR~~ls~WlC~~HN~VN~kLGKp~FdCs~v~eRW~~~~~~ 61 (78)
||+++|+++||+++||++|++|||++||.||++||||+|||+.+.|||++||.|
T Consensus 136 hf~~~lk~~pp~l~SR~~l~~Wl~~~HN~VN~rLgKp~fdc~~~~erw~~G~~d 189 (189)
T 4e0i_A 136 DFEKYIRENAPQVESREELGRWMCEAHNKVNKKLRKPKFDCNFWEKRWKDGWDE 189 (189)
T ss_dssp HHHHHHHHSCCCCSSHHHHHHHHHHHHHHHHHHTTCCCCCGGGHHHHHTSCCC-
T ss_pred HHHHHHHHCccccCCHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999763
No 7
>3gwn_A Probable FAD-linked sulfhydryl oxidase R596; five helix bundle, homodimer, disulfide bond, flavoprot oxidoreductase, virion; HET: FAD; 1.78A {Acanthamoeba polyphaga mimivirus}
Probab=99.81 E-value=4.7e-21 Score=126.79 Aligned_cols=51 Identities=20% Similarity=0.425 Sum_probs=48.3
Q ss_pred hHHHHHhhCC----CC-CCCHHHHHHHHHHHHHHHHHhcCCCC-CCchhHHhhhccC
Q 034937 8 HFKEVLRANP----VQ-AESHDEFSQWLCHVHNVVNRSLGKLV-FPCERVDARWGKL 58 (78)
Q Consensus 8 ~f~~~l~~~P----P~-v~SR~~ls~WlC~~HN~VN~kLGKp~-FdCs~v~eRW~~~ 58 (78)
||+++++++| |+ |+||++|++|||++||.||++||||. ++|+.|.|||+..
T Consensus 55 hf~~~~~~~p~~~~~~~v~sr~~~~~Wlc~~HN~VN~rLgKp~~~~~~~v~ery~~~ 111 (114)
T 3gwn_A 55 SYKKFITTGKTALTNEVLRNRHTLTKWFYDVHNAVNNKLEVDYGLSYEDVVNKYESF 111 (114)
T ss_dssp HHHHHTTSGGGCCCGGGGSSHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTT
T ss_pred HHHHHHHHCCCcCCccccCCHHHHHHHHHHHHhHHHHHhCCCCcCCHHHHHHHHHHH
Confidence 9999999999 99 99999999999999999999999997 5789999999863
No 8
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=99.35 E-value=3.4e-13 Score=105.74 Aligned_cols=54 Identities=30% Similarity=0.344 Sum_probs=46.9
Q ss_pred hHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhc-----CCCCCCchhHHhhhccCccC
Q 034937 8 HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSL-----GKLVFPCERVDARWGKLECE 61 (78)
Q Consensus 8 ~f~~~l~~~PP~v~SR~~ls~WlC~~HN~VN~kL-----GKp~FdCs~v~eRW~~~~~~ 61 (78)
||+++++++||+|+||+++++|||++||.||+|| ++|.|+|..+--+-.+..|.
T Consensus 427 hF~~~~~~~~~~v~s~~~~~~Wlw~~HN~VN~rL~~~~~~dp~f~k~q~P~~~~C~~C~ 485 (519)
T 3t58_A 427 HFEQMAAASMHQVRSPSNAILWLWTSHNRVNARLSGALSEDPHFPKVQWPPRELCSACH 485 (519)
T ss_dssp HHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHHHTTCTTCCTTSCCCSSSCTTTCSTTB
T ss_pred HHHHHHhhCCCcCCCHHHHHHHHHHhhCHHHhhcCCCCCCCCCCCccCCCCchhChhhh
Confidence 9999999999999999999999999999999999 66888887666555555554
No 9
>3td7_A FAD-linked sulfhydryl oxidase R596; four helix-bundle, orfan domain, oxidoreductase; HET: FAD; 2.21A {Acanthamoeba polyphaga mimivirus}
Probab=99.33 E-value=3.1e-13 Score=102.46 Aligned_cols=50 Identities=20% Similarity=0.401 Sum_probs=42.0
Q ss_pred hHHHHHhhCC-----CCCCCHHHHHHHHHHHHHHHHHhcCCCC-CCchhHHhhhcc
Q 034937 8 HFKEVLRANP-----VQAESHDEFSQWLCHVHNVVNRSLGKLV-FPCERVDARWGK 57 (78)
Q Consensus 8 ~f~~~l~~~P-----P~v~SR~~ls~WlC~~HN~VN~kLGKp~-FdCs~v~eRW~~ 57 (78)
||+++|+++| |.++||++|+.|+|++||.||++||||. +.-..+.++|..
T Consensus 89 HF~k~Lkk~Pv~~~~p~L~SRdsLskWL~~iHN~VNkrLGKP~~lSYedv~kkYE~ 144 (295)
T 3td7_A 89 SYKKFITTGKTALTNEVLRNRHTLTKWFYDVHNAVNNKLEVDYGLSYEDVVNKYES 144 (295)
T ss_dssp HHHHHTTSGGGCCCTTGGGSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHT
T ss_pred HHHHHHHhccccccccccCCHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 9999999988 5589999999999999999999999996 433455566554
No 10
>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide, alternative splicing, FAD, flavoprotein, glycoprotein, GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo sapiens} PDB: 3lli_A*
Probab=99.31 E-value=8.4e-13 Score=98.07 Aligned_cols=54 Identities=28% Similarity=0.343 Sum_probs=45.8
Q ss_pred hHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhc-----CCCCCCchhHHhhhccCccC
Q 034937 8 HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSL-----GKLVFPCERVDARWGKLECE 61 (78)
Q Consensus 8 ~f~~~l~~~PP~v~SR~~ls~WlC~~HN~VN~kL-----GKp~FdCs~v~eRW~~~~~~ 61 (78)
||+++++++||+|+||+++++|||++||.||++| +.|.|++..+-.+-.+..|-
T Consensus 170 hF~~~~~~~~~~v~sr~~~~lWLw~~HN~VN~rLag~~seDP~fpK~qwP~~~~Cp~C~ 228 (261)
T 3llk_A 170 HFEQMAAASMHRVGSPNAAVLWLWSSHNRVNARLAGAPSEDPQFPKVQWPPRELCSACH 228 (261)
T ss_dssp HHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHHHTTCTTSCTTSCCCSSSCTTTCSTTB
T ss_pred HHHHHHhhCCCccCCHHHHHHHHHHhcCHHhhhcCCCCCCCCCCCccCCCCchhChHHH
Confidence 9999999999999999999999999999999999 35788886655555555553
No 11
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*
Probab=98.95 E-value=7.2e-11 Score=92.93 Aligned_cols=48 Identities=23% Similarity=0.259 Sum_probs=40.7
Q ss_pred hHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhcCC------CCCCchhHHhhhccCccC
Q 034937 8 HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGK------LVFPCERVDARWGKLECE 61 (78)
Q Consensus 8 ~f~~~l~~~PP~v~SR~~ls~WlC~~HN~VN~kLGK------p~FdCs~v~eRW~~~~~~ 61 (78)
||++++ ++||+++++|||++||.||+||+| |.|||..+--...+..|.
T Consensus 341 hF~~~~------~~s~~~~~lWlw~~HN~VN~rL~~~~~~~dp~fpk~~~P~~~~C~~C~ 394 (470)
T 3qcp_A 341 HFIQFN------FSPNEDPVLQLWRAHNNVNARLANVKDGADPLVPKRQFPTLEACTECY 394 (470)
T ss_dssp HHTTCC------CCSSSCHHHHHHHHHHHHHHHHTTCCTTSCTTSCCCCSSCTTTCSSSS
T ss_pred HHHHHh------ccCHHHHHHHHHHHhCHHHHhcCCCCCCCCCCCCccCCCCchhChhhh
Confidence 666654 799999999999999999999998 889998877766676665
No 12
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=21.90 E-value=69 Score=18.83 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 034937 18 VQAESHDEFSQWLCHVHNVVNRSLGKLV 45 (78)
Q Consensus 18 P~v~SR~~ls~WlC~~HN~VN~kLGKp~ 45 (78)
..++|.+++..|+-.+.+.++.-.+.|.
T Consensus 100 l~a~s~~e~~~Wi~al~~~~~~~~~~~~ 127 (129)
T 1x05_A 100 LQAATPKERTEWIKAIQMASRTGKSGPS 127 (129)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCCSCSSS
T ss_pred EECCCHHHHHHHHHHHHHHHHccCCCCC
Confidence 4588999999999999999987776654
No 13
>2ajj_A NS5A, nonstructural protein 5A; IN-plane membrane anchor domain, amphipathic alpha-helix, membrane protein; NMR {Synthetic} PDB: 2ajm_A 2ajn_A 2ajo_A
Probab=21.81 E-value=25 Score=17.94 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhcCC
Q 034937 29 WLCHVHNVVNRSLGK 43 (78)
Q Consensus 29 WlC~~HN~VN~kLGK 43 (78)
=++.+|+.+|..+.|
T Consensus 8 Ll~~lh~~~~~~ikk 22 (28)
T 2ajj_A 8 LIYSLHKQINRGLKK 22 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 467899999987654
No 14
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=21.60 E-value=84 Score=22.72 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=24.6
Q ss_pred hHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHh
Q 034937 8 HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRS 40 (78)
Q Consensus 8 ~f~~~l~~~PP~v~SR~~ls~WlC~~HN~VN~k 40 (78)
++.+.+..|| ++...|..|.=++++.+++-
T Consensus 419 ~~~~~~~~~p---~~~~~~~~~~~~~~~~~~~~ 448 (453)
T 3atr_A 419 KIKELYLNYP---RSPSSLGSWRREVDNVLTEF 448 (453)
T ss_dssp HHHHHHHTCC---SSGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC---CChHHHHHHHHHHHHHHHHH
Confidence 7778888887 45889999999999888763
Done!