Query 034947
Match_columns 78
No_of_seqs 130 out of 1041
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 12:55:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034947.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034947hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s6n_E Small nuclear ribonucle 99.9 1.4E-26 4.9E-31 143.6 7.7 75 4-78 8-82 (92)
2 1i8f_A Putative snRNP SM-like 99.9 1.1E-23 3.6E-28 127.2 7.5 71 1-78 1-71 (81)
3 4emk_A U6 snRNA-associated SM- 99.9 1.8E-23 6.2E-28 130.1 8.6 69 6-78 14-82 (94)
4 1mgq_A SM-like protein; LSM, R 99.9 3.3E-23 1.1E-27 125.6 7.8 71 1-78 6-76 (83)
5 1ljo_A Archaeal SM-like protei 99.9 4.6E-22 1.6E-26 118.8 7.7 65 9-78 2-67 (77)
6 3s6n_F Small nuclear ribonucle 99.9 4.5E-22 1.5E-26 121.6 7.4 63 11-78 5-67 (86)
7 1n9r_A SMF, small nuclear ribo 99.9 3.8E-22 1.3E-26 123.7 5.4 70 4-78 13-83 (93)
8 4emk_B U6 snRNA-associated SM- 99.9 1E-21 3.6E-26 116.9 7.0 63 11-78 3-65 (75)
9 1th7_A SnRNP-2, small nuclear 99.9 2.2E-21 7.6E-26 116.8 7.9 64 10-78 7-70 (81)
10 3bw1_A SMX4 protein, U6 snRNA- 99.9 1.6E-21 5.5E-26 121.1 7.4 67 8-78 6-78 (96)
11 1h64_1 SnRNP SM-like protein; 99.8 3E-21 1E-25 114.6 7.6 63 11-78 3-65 (75)
12 2fwk_A U6 snRNA-associated SM- 99.8 1E-21 3.5E-26 126.4 5.7 68 7-78 23-104 (121)
13 1i4k_A Putative snRNP SM-like 99.8 3.7E-21 1.3E-25 114.6 7.4 63 11-78 3-65 (77)
14 4emg_A Probable U6 snRNA-assoc 99.8 6E-21 2E-25 118.1 7.5 65 10-78 7-83 (93)
15 1d3b_A Protein (small nuclear 99.8 1E-20 3.6E-25 112.8 7.7 63 11-78 4-66 (75)
16 4emh_A Probable U6 snRNA-assoc 99.8 5.8E-21 2E-25 120.8 6.4 65 10-78 14-78 (105)
17 4emk_C U6 snRNA-associated SM- 99.8 6.7E-21 2.3E-25 121.7 6.5 69 6-78 17-91 (113)
18 1b34_B Protein (small nuclear 99.8 1.4E-20 4.9E-25 120.6 6.2 68 9-78 24-104 (118)
19 3s6n_G Small nuclear ribonucle 99.8 3.7E-20 1.3E-24 110.5 5.4 61 13-78 5-65 (76)
20 1d3b_B Protein (small nuclear 99.8 2.3E-20 8E-25 114.2 4.6 63 12-78 4-75 (91)
21 1b34_A Protein (small nuclear 99.8 1.3E-19 4.5E-24 116.3 7.1 62 12-78 2-63 (119)
22 3pgw_B SM B; protein-RNA compl 99.8 1.2E-18 4.1E-23 122.7 8.2 64 11-78 3-75 (231)
23 2y9a_D Small nuclear ribonucle 99.7 3.6E-18 1.2E-22 111.0 7.3 63 11-78 4-66 (126)
24 1m5q_A SMAP3, small nuclear ri 99.7 8E-17 2.7E-21 105.0 4.8 56 14-78 2-57 (130)
25 1y96_A Gemin6, SIP2, GEM-assoc 98.0 1.7E-05 5.7E-10 48.3 6.2 42 11-57 7-49 (86)
26 1u1s_A HFQ protein; SM-like ba 98.0 1.1E-05 3.6E-10 48.9 4.8 40 14-56 9-48 (82)
27 2qtx_A Uncharacterized protein 97.9 4.5E-06 1.5E-10 49.3 2.6 37 16-55 17-53 (71)
28 3sb2_A Protein HFQ; SM-like, R 97.9 1.5E-05 5.2E-10 47.9 4.8 41 12-55 8-48 (79)
29 2y90_A Protein HFQ; RNA-bindin 97.9 1.8E-05 6.1E-10 49.7 4.8 41 13-56 10-50 (104)
30 2ylb_A Protein HFQ; RNA-bindin 97.9 1.5E-05 5.3E-10 47.2 4.1 40 14-56 11-50 (74)
31 3ahu_A Protein HFQ; SM-like mo 97.9 1.6E-05 5.5E-10 47.6 4.1 39 14-55 13-51 (78)
32 1kq1_A HFQ, HOST factor for Q 97.8 1.9E-05 6.5E-10 47.1 4.1 39 14-55 9-47 (77)
33 3hfo_A SSR3341 protein; HFQ, S 96.0 0.011 3.8E-07 34.5 4.2 43 11-56 7-50 (70)
34 3hfn_A ASL2047 protein; HFQ, S 95.9 0.026 8.9E-07 33.1 5.5 41 14-57 13-53 (72)
35 1ycy_A Conserved hypothetical 94.1 0.19 6.7E-06 29.0 5.7 42 15-61 9-50 (71)
36 2vxe_A CG10686-PA; EDC3, CAR-1 87.7 2.8 9.7E-05 25.2 6.4 55 20-78 11-74 (88)
37 1ib8_A Conserved protein SP14. 84.0 1.4 4.6E-05 28.8 4.0 50 2-55 85-136 (164)
38 2xk0_A Polycomb protein PCL; t 77.5 8 0.00027 22.2 5.3 48 20-71 17-65 (69)
39 4a53_A EDC3; RNA binding prote 73.4 4 0.00014 26.0 3.6 38 17-59 7-46 (125)
40 2fb7_A SM-like protein, LSM-14 73.2 2.7 9.4E-05 25.6 2.7 45 12-60 9-54 (95)
41 2vc8_A Enhancer of mRNA-decapp 71.1 7.8 0.00027 23.1 4.3 36 19-58 6-43 (84)
42 3rux_A BIRA bifunctional prote 63.0 14 0.00048 25.5 5.0 31 25-57 225-255 (270)
43 1bia_A BIRA bifunctional prote 53.4 51 0.0018 22.9 6.6 45 25-77 274-318 (321)
44 2eay_A Biotin [acetyl-COA-carb 50.4 12 0.00041 25.2 2.8 44 25-77 189-232 (233)
45 2ej9_A Putative biotin ligase; 41.2 47 0.0016 22.2 4.7 29 25-56 193-221 (237)
46 1y96_B Gemin7, SIP3, GEM-assoc 40.9 55 0.0019 19.3 4.8 56 12-77 19-75 (85)
47 1x4r_A PARP14 protein; WWE dom 40.5 1.7 5.7E-05 26.7 -2.5 36 11-58 17-52 (99)
48 4b4t_U RPN8, 26S proteasome re 35.7 64 0.0022 22.9 4.9 52 1-61 1-55 (338)
49 3sgr_A Tandem repeat of amyloi 35.0 36 0.0012 15.4 3.1 19 53-74 5-23 (25)
50 1nvp_D Transcription initiatio 34.1 46 0.0016 20.3 3.4 25 36-60 54-81 (108)
51 1ky9_A Protease DO, DEGP, HTRA 32.7 82 0.0028 23.0 5.1 29 26-56 112-140 (448)
52 4a8c_A Periplasmic PH-dependen 32.5 79 0.0027 22.9 5.0 31 25-57 88-118 (436)
53 2e12_A SM-like motif, hypothet 31.6 59 0.002 19.6 3.5 28 14-43 18-45 (101)
54 1nh2_D Transcription initiatio 31.2 54 0.0018 20.5 3.4 25 36-60 58-85 (121)
55 4hcz_A PHD finger protein 1; p 29.7 73 0.0025 17.5 3.4 35 27-63 10-47 (58)
56 3rkx_A Biotin-[acetyl-COA-carb 25.0 98 0.0033 21.7 4.3 29 25-56 280-308 (323)
57 2dxu_A Biotin--[acetyl-COA-car 23.6 58 0.002 21.8 2.7 28 25-56 190-217 (235)
58 3stj_A Protease DEGQ; serine p 22.5 1.3E+02 0.0045 21.0 4.5 29 26-56 89-117 (345)
59 1te0_A Protease DEGS; two doma 21.7 1.7E+02 0.0058 19.9 4.9 29 26-56 67-95 (318)
60 1lcy_A HTRA2 serine protease; 20.1 1.9E+02 0.0065 19.8 4.9 29 26-56 72-100 (325)
No 1
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.93 E-value=1.4e-26 Score=143.58 Aligned_cols=75 Identities=64% Similarity=1.064 Sum_probs=64.4
Q ss_pred cccceeecChHHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEeceEEEEecCCeeeeeeEEEEecC
Q 034947 4 TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGFFSKETT 78 (78)
Q Consensus 4 ~~~~~~~~~Pl~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da~E~~~~~~~~~~lG~ilir~~ 78 (78)
++.||.|..|+++|.++++++.+|.+|++.++|+++.|+|.|||+||||+|+||+|+..+++..+.+|.++|||.
T Consensus 8 ~~~~~~m~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~iRG~ 82 (92)
T 3s6n_E 8 QKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGD 82 (92)
T ss_dssp ------CCCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSCCEEEEEEEEECGG
T ss_pred CccceeccCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCCceeEcCeEEEeCC
Confidence 467889999999999999999888888888889999999999999999999999999766778889999999994
No 2
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.90 E-value=1.1e-23 Score=127.16 Aligned_cols=71 Identities=23% Similarity=0.295 Sum_probs=57.6
Q ss_pred CCccccceeecChHHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEeceEEEEecCCeeeeeeEEEEecC
Q 034947 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGFFSKETT 78 (78)
Q Consensus 1 ms~~~~~~~~~~Pl~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da~E~~~~~~~~~~lG~ilir~~ 78 (78)
||+. .++....|+.+|.++++++ |.|+|++ |+++.|+|.|||+|||++|+||+|+ +++..+.+|.++|||.
T Consensus 1 m~~~-~~~~~~~P~~~L~~~~~~~--V~V~l~~--g~~~~G~L~~~D~~mNlvL~d~~e~--~~~~~~~lg~v~iRG~ 71 (81)
T 1i8f_A 1 MASD-ISKCFATLGATLQDSIGKQ--VLVKLRD--SHEIRGILRSFDQHVNLLLEDAEEI--IDGNVYKRGTMVVRGE 71 (81)
T ss_dssp ----------CCHHHHHHTTTTSE--EEEEEGG--GEEEEEEEEEECTTCCEEEEEEEEE--ETTEEEEEEEEEECGG
T ss_pred CCcc-cCccccchHHHHHHHCCCe--EEEEEcC--CcEEEEEEEEEcCCCeeEEccEEEE--cCCcccCCCEEEECCC
Confidence 7875 6888899999999999965 9999976 8999999999999999999999999 5677899999999994
No 3
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.90 E-value=1.8e-23 Score=130.11 Aligned_cols=69 Identities=20% Similarity=0.373 Sum_probs=57.0
Q ss_pred cceeecChHHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEeceEEEEecCCeeeeeeEEEEecC
Q 034947 6 VQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGFFSKETT 78 (78)
Q Consensus 6 ~~~~~~~Pl~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da~E~~~~~~~~~~lG~ilir~~ 78 (78)
+++.+..|+++|.++++++ |.|.+++ |++|.|+|.|||+||||+|+||+|+..+++..+.+|.++|||.
T Consensus 14 ~~~~~~~Pl~lL~~~l~k~--V~V~Lk~--gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~IRG~ 82 (94)
T 4emk_A 14 PMSMTILPLELIDKCIGSN--LWVIMKS--EREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGN 82 (94)
T ss_dssp ------CHHHHHHHTTTSE--EEEEESS--SEEEEEEEEEECTTCCEEEEEEEEEETTTCCEEEEEEEEECST
T ss_pred CccccccCHHHHHHHcCCe--EEEEECC--CcEEEEEEEEEcccCCeEeeeEEEEecCCCcEeEcCEEEEcCC
Confidence 5677899999999999976 7777754 9999999999999999999999999646677899999999995
No 4
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.89 E-value=3.3e-23 Score=125.60 Aligned_cols=71 Identities=30% Similarity=0.375 Sum_probs=60.5
Q ss_pred CCccccceeecChHHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEeceEEEEecCCeeeeeeEEEEecC
Q 034947 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGFFSKETT 78 (78)
Q Consensus 1 ms~~~~~~~~~~Pl~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da~E~~~~~~~~~~lG~ilir~~ 78 (78)
||++ .+....|+++|.++++++ |.|+|++ |+++.|+|.|||+|||++|+||+|++ .++..+.+|.++|||.
T Consensus 6 ms~~--~~~~~~P~~~L~~~~~~~--V~V~Lk~--g~~~~G~L~~~D~~mNlvL~d~~e~~-~~~~~~~lg~v~IRG~ 76 (83)
T 1mgq_A 6 VSSQ--RVNVQRPLDALGNSLNSP--VIIKLKG--DREFRGVLKSFDLHMNLVLNDAEELE-DGEVTRRLGTVLIRGD 76 (83)
T ss_dssp ------CCCTTCTTHHHHHTTTSE--EEEEETT--TEEEEEEEEEECTTCCEEEEEEEEEE-TTEEEEEEEEEEECGG
T ss_pred cccc--cccCcChHHHHHHhCCCE--EEEEEcC--CcEEEEEEEEECCCceeEEccEEEEe-cCCcccCCCEEEECCC
Confidence 7864 566789999999999975 9999966 99999999999999999999999996 5677889999999994
No 5
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.87 E-value=4.6e-22 Score=118.77 Aligned_cols=65 Identities=23% Similarity=0.386 Sum_probs=58.7
Q ss_pred eecChHHHHHHhhcCcceEEEEEEecCC-eEEEEEEEEeccccceeEeceEEEEecCCeeeeeeEEEEecC
Q 034947 9 IMTQPINLIFRFLQSKARIQIWLFEQKD-LRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGFFSKETT 78 (78)
Q Consensus 9 ~~~~Pl~~L~~~~~k~~~V~V~lk~~~~-~~~~G~L~gfD~~mNlvL~da~E~~~~~~~~~~lG~ilir~~ 78 (78)
.|..|+++|.++++++ |+|++++ | +++.|+|.|||+|||++|+||+|++ +++..+.+|.++|||.
T Consensus 2 ~m~~P~~~L~~~~~~~--v~V~lk~--g~~~~~G~L~~~D~~mNlvL~d~~e~~-~~~~~~~lg~v~iRG~ 67 (77)
T 1ljo_A 2 AMVLPNQMVKSMVGKI--IRVEMKG--EENQLVGKLEGVDDYMNLYLTNAMECK-GEEKVRSLGEIVLRGN 67 (77)
T ss_dssp CCCCHHHHHHHTTTSE--EEEEETT--CSSEEEEEEEEECTTCCEEEEEEEEEE-TTEEEEEEEEEEECGG
T ss_pred CccchHHHHHHHCCCE--EEEEEeC--CCEEEEEEEEEECCcceEEEeeEEEEe-cCCcEeECCeEEEeCC
Confidence 3679999999999976 8888865 8 9999999999999999999999996 6677889999999994
No 6
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.86 E-value=4.5e-22 Score=121.61 Aligned_cols=63 Identities=19% Similarity=0.250 Sum_probs=57.3
Q ss_pred cChHHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEeceEEEEecCCeeeeeeEEEEecC
Q 034947 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGFFSKETT 78 (78)
Q Consensus 11 ~~Pl~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da~E~~~~~~~~~~lG~ilir~~ 78 (78)
..|+++|.++++++ |+|+|++ |+++.|+|.|||+|||++|+||+|+. +++..+.+|.++|||.
T Consensus 5 ~~P~~~L~~~~~k~--V~V~Lk~--g~~~~G~L~~~D~~mNlvL~d~~e~~-~g~~~~~lg~v~IRG~ 67 (86)
T 3s6n_F 5 LNPKPFLNGLTGKP--VMVKLKW--GMEYKGYLVSVDGYMNMQLANTEEYI-DGALSGHLGEVLIRCN 67 (86)
T ss_dssp CCHHHHHHHHTTSE--EEEEETT--SCEEEEEEEEECTTCCEEEEEEEEEE-TTEEEEEESSEEECGG
T ss_pred cCcHHHHHHhCCCe--EEEEEcC--CeEEEEEEEEEcCceEEEEeeEEEEc-CCceeeEccEEEEeCC
Confidence 57999999999976 9899866 89999999999999999999999984 7777889999999994
No 7
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.86 E-value=3.8e-22 Score=123.69 Aligned_cols=70 Identities=19% Similarity=0.249 Sum_probs=52.4
Q ss_pred cccceeecChHHHHHHhhcCcceEEEEEEecCC-eEEEEEEEEeccccceeEeceEEEEecCCeeeeeeEEEEecC
Q 034947 4 TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKD-LRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGFFSKETT 78 (78)
Q Consensus 4 ~~~~~~~~~Pl~~L~~~~~k~~~V~V~lk~~~~-~~~~G~L~gfD~~mNlvL~da~E~~~~~~~~~~lG~ilir~~ 78 (78)
..+......|+.+|.++++++ |+|+|++ | +++.|+|.|||+|||++|+||+|++ +++..+.+|.++|||.
T Consensus 13 ~~~~~~~~~P~~~L~~~i~k~--V~V~Lk~--g~~~~~G~L~~~D~~MNlvL~d~~E~~-~~~~~~~lg~v~IRG~ 83 (93)
T 1n9r_A 13 DISAMQPVNPKPFLKGLVNHR--VGVKLKF--NSTEYRGTLVSTDNYFNLQLNEAEEFV-AGVSHGTLGEIFIRCN 83 (93)
T ss_dssp -------------CGGGTTSE--EEEEESS--TTEEEEEEEEECCTTTCEEEEEEEEEE-TTEEEEECCSEEECGG
T ss_pred cccccccCChHHHHHHhCCCE--EEEEEcC--CCEEEEEEEEEEccccEEEEeeEEEEc-CCCeEeEcCEEEEcCC
Confidence 334566789999999999965 9999976 7 9999999999999999999999995 7777889999999994
No 8
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.86 E-value=1e-21 Score=116.92 Aligned_cols=63 Identities=22% Similarity=0.312 Sum_probs=57.0
Q ss_pred cChHHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEeceEEEEecCCeeeeeeEEEEecC
Q 034947 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGFFSKETT 78 (78)
Q Consensus 11 ~~Pl~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da~E~~~~~~~~~~lG~ilir~~ 78 (78)
..|+++|.++++++ |.|+|++ |+++.|+|.|||+|||++|+||+|+. +++..+.+|.++|||.
T Consensus 3 ~~P~~~L~~~~~k~--V~V~Lk~--g~~~~G~L~~~D~~mNlvL~d~~e~~-~~~~~~~lg~v~iRG~ 65 (75)
T 4emk_B 3 SSPNEFLNKVIGKK--VLIRLSS--GVDYKGILSCLDGYMNLALERTEEYV-NGKKTNVYGDAFIRGN 65 (75)
T ss_dssp SHHHHHHHHTTTSE--EEEECTT--SCEEEEEEEEECTTCEEEEEEEEEEE-TTEEEEEEEEEEEEGG
T ss_pred CchHHHHHHhCCCe--EEEEEcC--CcEEEEEEEEEcCcceEEEccEEEEe-cCCcccEecEEEEcCC
Confidence 47999999999975 8888865 89999999999999999999999994 7777889999999994
No 9
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.85 E-value=2.2e-21 Score=116.85 Aligned_cols=64 Identities=23% Similarity=0.358 Sum_probs=57.5
Q ss_pred ecChHHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEeceEEEEecCCeeeeeeEEEEecC
Q 034947 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGFFSKETT 78 (78)
Q Consensus 10 ~~~Pl~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da~E~~~~~~~~~~lG~ilir~~ 78 (78)
...|+++|.++++++ |.|+|++ |+++.|+|.|||+|||++|+||+|++ .++..+.+|.++|||.
T Consensus 7 ~~~P~~~L~~~~~~~--V~V~l~~--g~~~~G~L~~~D~~mNlvL~d~~e~~-~~~~~~~lg~v~iRG~ 70 (81)
T 1th7_A 7 AETAHKVLAESLNNL--VLVKLKG--NKEVRGMLRSYDQHMNLVLSDSEEIQ-SDGSGKKLGTIVIRGD 70 (81)
T ss_dssp CHHHHHHHHHHTTSE--EEEEETT--TEEEEEEEEEECTTCCEEEEEEEEEC-SSSCEEEEEEEEECGG
T ss_pred ccchHHHHHHhCCCe--EEEEEcC--CcEEEEEEEEEcCCCCEEEccEEEEe-cCCceeECCEEEECCC
Confidence 368999999999975 8888865 89999999999999999999999996 5567889999999994
No 10
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.6e-21 Score=121.13 Aligned_cols=67 Identities=22% Similarity=0.292 Sum_probs=59.0
Q ss_pred eeecChHHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEeceEEEEec------CCeeeeeeEEEEecC
Q 034947 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIK------KNTRKPLGFFSKETT 78 (78)
Q Consensus 8 ~~~~~Pl~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da~E~~~~------~~~~~~lG~ilir~~ 78 (78)
.-|..|+.+|.++++++ |.|.|++ ||++.|+|.|||+||||||+||+|++.+ ++..+.+|.++|||.
T Consensus 6 ~~~~~p~~~L~~~i~k~--V~V~Lk~--gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~ 78 (96)
T 3bw1_A 6 HHMETPLDLLKLNLDER--VYIKLRG--ARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGD 78 (96)
T ss_dssp CCCCCHHHHHGGGTTSE--EEEEEGG--GCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGG
T ss_pred hhhhhHHHHHHHHCCCe--EEEEECC--CcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCC
Confidence 34789999999999976 8888866 8999999999999999999999999754 345788999999994
No 11
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.85 E-value=3e-21 Score=114.62 Aligned_cols=63 Identities=29% Similarity=0.503 Sum_probs=56.9
Q ss_pred cChHHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEeceEEEEecCCeeeeeeEEEEecC
Q 034947 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGFFSKETT 78 (78)
Q Consensus 11 ~~Pl~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da~E~~~~~~~~~~lG~ilir~~ 78 (78)
..|+++|.++++++ |.|++++ |+++.|+|.|||+|||++|+||+|++ .+...+.+|.++|||.
T Consensus 3 ~~P~~~L~~~~~~~--V~V~l~~--g~~~~G~L~~~D~~mNlvL~d~~e~~-~~~~~~~lg~v~iRG~ 65 (75)
T 1h64_1 3 ERPLDVIHRSLDKD--VLVILKK--GFEFRGRLIGYDIHLNVVLADAEMIQ-DGEVVKRYGKIVIRGD 65 (75)
T ss_dssp CCHHHHHHTTTTSE--EEEEETT--SEEEEEEEEEECTTCCEEEEEEEEEE-TTEEEEEEEEEEECGG
T ss_pred chHHHHHHHHCCCE--EEEEECC--CCEEEEEEEEEeCCCCeEEeeEEEEe-eCCceeECCEEEECCC
Confidence 47999999999975 8888865 99999999999999999999999996 5677889999999994
No 12
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.85 E-value=1e-21 Score=126.44 Aligned_cols=68 Identities=28% Similarity=0.444 Sum_probs=56.5
Q ss_pred ceeecChHHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEeceEEEEec---------CCe-----eeeeeE
Q 034947 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIK---------KNT-----RKPLGF 72 (78)
Q Consensus 7 ~~~~~~Pl~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da~E~~~~---------~~~-----~~~lG~ 72 (78)
.+.+..|+++|.++++++ |.|.| ++|+++.|+|.|||+||||||+||+|++.+ ++. .+.+|.
T Consensus 23 ~~~~~~Pl~lL~~~l~k~--V~V~L--k~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~ 98 (121)
T 2fwk_A 23 GGNIILPLALIDKCIGNR--IYVVM--KGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLET 98 (121)
T ss_dssp -CCCCCHHHHHHHTBTSB--CEEEE--TTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSE
T ss_pred cccccCcHHHHHHHcCCe--EEEEE--CCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcce
Confidence 446789999999999976 76776 559999999999999999999999999743 323 688999
Q ss_pred EEEecC
Q 034947 73 FSKETT 78 (78)
Q Consensus 73 ilir~~ 78 (78)
++|||.
T Consensus 99 v~IRG~ 104 (121)
T 2fwk_A 99 ILLSGN 104 (121)
T ss_dssp EEECGG
T ss_pred EEECCC
Confidence 999994
No 13
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.84 E-value=3.7e-21 Score=114.58 Aligned_cols=63 Identities=29% Similarity=0.428 Sum_probs=57.0
Q ss_pred cChHHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEeceEEEEecCCeeeeeeEEEEecC
Q 034947 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGFFSKETT 78 (78)
Q Consensus 11 ~~Pl~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da~E~~~~~~~~~~lG~ilir~~ 78 (78)
..|+++|.++++++ |.|+|++ |+++.|+|.|||+|||++|+||+|++ .+...+.+|.++|||.
T Consensus 3 ~~P~~~L~~~~~~~--V~V~L~~--g~~~~G~L~~~D~~mNlvL~d~~e~~-~~~~~~~lg~v~iRG~ 65 (77)
T 1i4k_A 3 PRPLDVLNRSLKSP--VIVRLKG--GREFRGTLDGYDIHMNLVLLDAEEIQ-NGEVVRKVGSVVIRGD 65 (77)
T ss_dssp CCHHHHHHTTTTSE--EEEEETT--SCEEEEEEEEECTTCCEEEEEEEEEE-TTEEEEEEEEEEECGG
T ss_pred ccHHHHHHHhCCCE--EEEEEcC--CCEEEEEEEEEcCCCCeEEeeEEEEe-cCCcEeECCEEEECCC
Confidence 47999999999965 9999966 89999999999999999999999996 5667889999999994
No 14
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.84 E-value=6e-21 Score=118.14 Aligned_cols=65 Identities=28% Similarity=0.434 Sum_probs=55.1
Q ss_pred ecChHHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEeceEEEEec----C--------CeeeeeeEEEEec
Q 034947 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIK----K--------NTRKPLGFFSKET 77 (78)
Q Consensus 10 ~~~Pl~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da~E~~~~----~--------~~~~~lG~ilir~ 77 (78)
...|+++|+.+++++ |.|+|+ +|++|.|+|.|||+||||+|+||+|++.+ + +..+.+|.++|||
T Consensus 7 ~~~Pl~lL~~~~~~~--V~V~l~--~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG 82 (93)
T 4emg_A 7 VAEPLDLVRLSLDEI--VYVKLR--GDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRG 82 (93)
T ss_dssp --CTTHHHHTTTTSE--EEEEET--TTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECG
T ss_pred cCCCHHHHHHhCCCE--EEEEEC--CCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECC
Confidence 579999999999975 888885 49999999999999999999999999752 2 3578999999999
Q ss_pred C
Q 034947 78 T 78 (78)
Q Consensus 78 ~ 78 (78)
.
T Consensus 83 ~ 83 (93)
T 4emg_A 83 D 83 (93)
T ss_dssp G
T ss_pred C
Confidence 4
No 15
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.84 E-value=1e-20 Score=112.83 Aligned_cols=63 Identities=11% Similarity=0.073 Sum_probs=56.4
Q ss_pred cChHHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEeceEEEEecCCeeeeeeEEEEecC
Q 034947 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGFFSKETT 78 (78)
Q Consensus 11 ~~Pl~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da~E~~~~~~~~~~lG~ilir~~ 78 (78)
..|+++|+++++++ |+|+|++ |++++|+|.|||+|||++|+||+|+. .++....+|.++|||.
T Consensus 4 ~~P~~~L~~~~g~~--V~VeLk~--g~~~~G~L~~~D~~MNl~L~~~~e~~-~~~~~~~lg~v~IRG~ 66 (75)
T 1d3b_A 4 GVPIKVLHEAEGHI--VTCETNT--GEVYRGKLIEAEDNMNCQMSNITVTY-RDGRVAQLEQVYIRGC 66 (75)
T ss_dssp CCHHHHHHHTTTSE--EEEEETT--SCEEEEEEEEECTTCCEEEEEEEEEC-TTSCEEEEEEEEECGG
T ss_pred cCHHHHHHHhCCCE--EEEEECC--CcEEEEEEEEEccceeEEEEeEEEEC-CCCcEEEcCeEEEeCC
Confidence 57999999999975 9899865 89999999999999999999999995 4445889999999994
No 16
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.83 E-value=5.8e-21 Score=120.81 Aligned_cols=65 Identities=18% Similarity=0.136 Sum_probs=48.2
Q ss_pred ecChHHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEeceEEEEecCCeeeeeeEEEEecC
Q 034947 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGFFSKETT 78 (78)
Q Consensus 10 ~~~Pl~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da~E~~~~~~~~~~lG~ilir~~ 78 (78)
.-.|+.+|.++++++ |+|+|++ |++|.|+|.|||+||||+|+||+|+..+++..+.+|.++|||.
T Consensus 14 ~~~p~~lL~~~igk~--V~V~Lk~--G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~IRG~ 78 (105)
T 4emh_A 14 PMLPLTLLNATQGRP--ILVELKN--GETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGN 78 (105)
T ss_dssp ------------CCE--EEEEETT--SCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEEECGG
T ss_pred CCcHHHHHHHhCCCE--EEEEECC--CCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEEEeCC
Confidence 468999999999976 9999966 8999999999999999999999999767777889999999994
No 17
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.83 E-value=6.7e-21 Score=121.74 Aligned_cols=69 Identities=32% Similarity=0.415 Sum_probs=46.0
Q ss_pred cceeecChHHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEeceEEEEecC------CeeeeeeEEEEecC
Q 034947 6 VQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK------NTRKPLGFFSKETT 78 (78)
Q Consensus 6 ~~~~~~~Pl~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da~E~~~~~------~~~~~lG~ilir~~ 78 (78)
+.++...|+..|.++++++ |.|.|+ +||+|.|+|.|||+||||||+||+|++.+. ...+.+|.++|||.
T Consensus 17 ~~~~kke~i~~L~~~l~k~--V~V~L~--dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~ 91 (113)
T 4emk_C 17 TERPRKESILDLSRYQDQR--IQATFT--GGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGT 91 (113)
T ss_dssp ---------------CCSE--EEEEET--TSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTT
T ss_pred ccCCccchHHHHHHHcCCc--EEEEEe--CCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCC
Confidence 4556678999999999976 888875 599999999999999999999999997542 46889999999995
No 18
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.82 E-value=1.4e-20 Score=120.55 Aligned_cols=68 Identities=18% Similarity=0.321 Sum_probs=53.7
Q ss_pred eecChHHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEeceEEEEecC-------------CeeeeeeEEEE
Q 034947 9 IMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK-------------NTRKPLGFFSK 75 (78)
Q Consensus 9 ~~~~Pl~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da~E~~~~~-------------~~~~~lG~ili 75 (78)
.+..|+++|.+++++.++|.|+|++ |++|.|+|.|||+||||||+||+|++... +..+.+|.++|
T Consensus 24 ~~~~Pl~lL~~~~~~~k~V~V~Lk~--gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~I 101 (118)
T 1b34_B 24 FNTGPLSVLTQSVKNNTQVLINCRN--NKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFL 101 (118)
T ss_dssp --CCHHHHHHHHHHHTCEEEEEETT--SCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEE
T ss_pred cccChHHHHHHHhcCCcEEEEEECC--CcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEE
Confidence 3679999999999633469999965 89999999999999999999999996321 12457999999
Q ss_pred ecC
Q 034947 76 ETT 78 (78)
Q Consensus 76 r~~ 78 (78)
||.
T Consensus 102 RG~ 104 (118)
T 1b34_B 102 RGD 104 (118)
T ss_dssp CGG
T ss_pred cCC
Confidence 994
No 19
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.80 E-value=3.7e-20 Score=110.49 Aligned_cols=61 Identities=23% Similarity=0.441 Sum_probs=43.3
Q ss_pred hHHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEeceEEEEecCCeeeeeeEEEEecC
Q 034947 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGFFSKETT 78 (78)
Q Consensus 13 Pl~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da~E~~~~~~~~~~lG~ilir~~ 78 (78)
|.++|.++++++ |.|.|++ |+++.|+|.|||+|||++|+||+|+. .+++.+.+|.++|||.
T Consensus 5 ~~~~L~~~~~k~--V~V~Lk~--gr~~~G~L~~~D~~mNlvL~~~~e~~-~~~~~~~lg~v~iRG~ 65 (76)
T 3s6n_G 5 HPPELKKFMDKK--LSLKLNG--GRHVQGILRGFDPFMNLVIDECVEMA-TSGQQNNIGMVVIRGN 65 (76)
T ss_dssp ---------CCE--EEEEETT--TEEEEEEEEEECTTCCEEEEEEEECC-CC----CBSSEEECSS
T ss_pred chHHHHHhCCCe--EEEEECC--CcEEEEEEEEECCcceEEEeceEEEc-cCCcEeEcCEEEECCC
Confidence 667899999976 8888865 99999999999999999999999995 4456789999999995
No 20
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.80 E-value=2.3e-20 Score=114.23 Aligned_cols=63 Identities=19% Similarity=0.337 Sum_probs=52.2
Q ss_pred ChHHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEeceEEEEe---------cCCeeeeeeEEEEecC
Q 034947 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI---------KKNTRKPLGFFSKETT 78 (78)
Q Consensus 12 ~Pl~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da~E~~~---------~~~~~~~lG~ilir~~ 78 (78)
.|..+|.++++++ |.|.+++ |+++.|+|.|||+||||+|+||+|++. ++...+.+|.++|||.
T Consensus 4 ~~~~~L~~~~~k~--V~V~l~~--gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~ 75 (91)
T 1d3b_B 4 GKSSKMLQHIDYR--MRCILQD--GRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGE 75 (91)
T ss_dssp ---CCCGGGTTSE--EEEEETT--CCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGG
T ss_pred ChhHHHHHHcCCc--EEEEECC--CeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCC
Confidence 5778899999976 8888854 999999999999999999999999852 2356789999999994
No 21
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.80 E-value=1.3e-19 Score=116.33 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=55.9
Q ss_pred ChHHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEeceEEEEecCCeeeeeeEEEEecC
Q 034947 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGFFSKETT 78 (78)
Q Consensus 12 ~Pl~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da~E~~~~~~~~~~lG~ilir~~ 78 (78)
.|+.+|.++++++ |+|+|++ |++|.|+|.|||+||||+|+||+|+. .+.....+|.++|||.
T Consensus 2 ~p~~~L~~~~gk~--V~V~Lk~--g~~~~G~L~~~D~~MNlvL~d~~e~~-~~~~~~~lg~v~IRG~ 63 (119)
T 1b34_A 2 KLVRFLMKLSHET--VTIELKN--GTQVHGTITGVDVSMNTHLKAVKMTL-KNREPVQLETLSIRGN 63 (119)
T ss_dssp CHHHHHHTCTTCE--EEEEETT--CCEEEEEEEEECTTCCEEEEEEEEEC-TTSCCEEEEEEEECGG
T ss_pred ChHHHHHHhCCCE--EEEEEcC--CCEEEEEEEEEcccceEEeccEEEec-CCCceeEcceEEEcCC
Confidence 6999999999965 9999965 89999999999999999999999995 5556789999999994
No 22
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.76 E-value=1.2e-18 Score=122.73 Aligned_cols=64 Identities=19% Similarity=0.332 Sum_probs=55.7
Q ss_pred cChHHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEeceEEEEe---------cCCeeeeeeEEEEecC
Q 034947 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI---------KKNTRKPLGFFSKETT 78 (78)
Q Consensus 11 ~~Pl~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da~E~~~---------~~~~~~~lG~ilir~~ 78 (78)
+++...|.++++|+ |.|+|++ ||+|+|+|+|||+||||||+||+|++. +.++.+.+|+++|||.
T Consensus 3 v~k~~kL~klIdKr--V~V~Lkd--GRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGd 75 (231)
T 3pgw_B 3 VGKSSKMLQHIDYR--MRCILQD--GRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGE 75 (231)
T ss_pred cCchHHHHHhcCCe--EEEEECC--CcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCC
Confidence 46778999999987 8888855 999999999999999999999999963 1357899999999995
No 23
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.74 E-value=3.6e-18 Score=110.96 Aligned_cols=63 Identities=11% Similarity=0.049 Sum_probs=56.1
Q ss_pred cChHHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEeceEEEEecCCeeeeeeEEEEecC
Q 034947 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGFFSKETT 78 (78)
Q Consensus 11 ~~Pl~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da~E~~~~~~~~~~lG~ilir~~ 78 (78)
..|+++|.+++++. |+|.|++ |++|.|+|.+||.|||++|+||+|+..++ ....+|.++|||.
T Consensus 4 ~~P~~~L~~~~gk~--V~VeLkn--G~~~~G~L~~~D~~MNi~L~dv~e~~~~g-~~~~l~~v~IRGn 66 (126)
T 2y9a_D 4 GVPIKVLHEAEGHI--VTCETNT--GEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGS 66 (126)
T ss_dssp CCSHHHHHSCSSCE--EEEEESS--CCEEEEEEEEECTTSCEEEEEEEEECTTS-CCEEEEEEEECGG
T ss_pred ccHHHHHHHhCCCE--EEEEECC--CcEEEEEEEEEcCceEEEEeeEEEEcCCC-cEeecccEEEeCC
Confidence 57999999999975 9999976 89999999999999999999999995344 4789999999984
No 24
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.65 E-value=8e-17 Score=105.04 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=49.5
Q ss_pred HHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEeceEEEEecCCeeeeeeEEEEecC
Q 034947 14 INLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGFFSKETT 78 (78)
Q Consensus 14 l~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da~E~~~~~~~~~~lG~ilir~~ 78 (78)
.++|.++++++ |+|+|++ |+++.|+|.|||+||||+|+||+|+. ...+|.++|||.
T Consensus 2 ~~~L~~~igk~--V~V~Lk~--G~~~~G~L~~~D~~MNlvL~d~~E~~-----~~~lg~v~IRG~ 57 (130)
T 1m5q_A 2 VAELNNLLGRE--VQVVLSN--GEVYKGVLHAVDNQLNIVLANASNKA-----GEKFNRVFIMYR 57 (130)
T ss_dssp HHHHHHTTTSE--EEEEETT--SCEEEEEEEEECTTCCEEEEEEECTT-----CCEEEEEEECGG
T ss_pred hhHHHHhCCCe--EEEEECC--CcEEEEEEEEEcccceeEEeeEEEEc-----CCEeceEEEeCC
Confidence 36899999975 9999966 89999999999999999999999972 368999999994
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.02 E-value=1.7e-05 Score=48.33 Aligned_cols=42 Identities=14% Similarity=0.225 Sum_probs=36.1
Q ss_pred cChHHHHHHhhcCcceEEEEEEecCCeEEEEEEEEec-cccceeEece
Q 034947 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFD-EYMNLVLDDA 57 (78)
Q Consensus 11 ~~Pl~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD-~~mNlvL~da 57 (78)
..|+ -|.++++|+ |.|.+. +|+.|.|.|.+|| .-.|++|.||
T Consensus 7 ~~p~-el~~li~Ke--V~V~l~--dg~~y~G~l~tvDp~s~sIvL~n~ 49 (86)
T 1y96_A 7 KGPL-EWQDYIYKE--VRVTAS--EKNEYKGWVLTTDPVSANIVLVNF 49 (86)
T ss_dssp SCHH-HHHHTTTCE--EEEEET--TTEEEEEEEEEECTTTCCEEEEEE
T ss_pred CCHH-HHHhhcCCE--EEEEEc--CCCEEEEEEEEECCCceEEEEeec
Confidence 3566 678899987 777775 4999999999999 9999999998
No 26
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=97.99 E-value=1.1e-05 Score=48.85 Aligned_cols=40 Identities=18% Similarity=0.550 Sum_probs=34.0
Q ss_pred HHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEec
Q 034947 14 INLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDD 56 (78)
Q Consensus 14 l~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~d 56 (78)
-.+|+.+-.++.+|+|.|.+ |..++|.+.|||+|+ +.|++
T Consensus 9 d~fLn~lrk~~~~Vtv~L~N--G~~l~G~I~~fD~ft-VlL~~ 48 (82)
T 1u1s_A 9 DPYLNTLRKERVPVSIYLVN--GIKLQGQIESFDQFV-ILLKN 48 (82)
T ss_dssp HHHHHHHHHTTCCEEEEETT--SCEEEEEEEEECSSE-EEEES
T ss_pred HHHHHHHHHcCCcEEEEEeC--CcEEEEEEEEEcceE-EEEec
Confidence 45788888888999999976 899999999999999 55553
No 27
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=97.95 E-value=4.5e-06 Score=49.29 Aligned_cols=37 Identities=11% Similarity=0.340 Sum_probs=31.2
Q ss_pred HHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEe
Q 034947 16 LIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLD 55 (78)
Q Consensus 16 ~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~ 55 (78)
+|+..-.++.+|+|.|.+ |..++|.+.|||+|+ +.|+
T Consensus 17 fLn~~r~~~~~Vtv~L~N--G~~l~G~I~~fD~ft-Vll~ 53 (71)
T 2qtx_A 17 FEYARRLNGKKVKIFLRN--GEVLDAEVTGVSNYE-IMVK 53 (71)
T ss_dssp CCGGGGGTTCEEEEEETT--SCEEEEEEEEECSSE-EEEE
T ss_pred HHHHHHHcCCcEEEEEeC--CeEEEEEEEEEcceE-EEEE
Confidence 667777888899999976 899999999999999 4444
No 28
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=97.94 E-value=1.5e-05 Score=47.85 Aligned_cols=41 Identities=17% Similarity=0.493 Sum_probs=34.8
Q ss_pred ChHHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEe
Q 034947 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLD 55 (78)
Q Consensus 12 ~Pl~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~ 55 (78)
.--.+|+.+..++.+|+|.|.+ |..++|.+.+||.|+ +.|+
T Consensus 8 lQd~fLn~lrk~k~~VtI~Lvn--G~~L~G~I~~fD~f~-VlL~ 48 (79)
T 3sb2_A 8 LQDPFLNALRKEHVPVSIYLVN--GIKLQGHVESFDQYV-VLLR 48 (79)
T ss_dssp THHHHHHHHHHTTCCEEEEETT--SCEEEEEEEEECSSE-EEEE
T ss_pred hHHHHHHHHHhcCCeEEEEEeC--CCEEEEEEEEECCcE-EEEE
Confidence 3346899999999999999977 899999999999999 4454
No 29
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=97.90 E-value=1.8e-05 Score=49.73 Aligned_cols=41 Identities=17% Similarity=0.548 Sum_probs=35.1
Q ss_pred hHHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEec
Q 034947 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDD 56 (78)
Q Consensus 13 Pl~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~d 56 (78)
=-.+|+.+..++.+|+|.|.+ |..++|.+.+||.|+ +.|++
T Consensus 10 Qd~fLn~lrk~k~~VtI~LvN--G~~L~G~I~~fD~f~-VlL~~ 50 (104)
T 2y90_A 10 QDPFLNALRRERVPVSIYLVN--GIKLQGQIESFDQFV-ILLKN 50 (104)
T ss_dssp HHHHHHHHHHTTCCEEEEETT--SCEEEEEEEEECSSE-EEEES
T ss_pred HHHHHHHHHhcCCcEEEEEeC--CCEEEEEEEEECCcE-EEEEC
Confidence 346899999999999999976 899999999999999 55554
No 30
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=97.88 E-value=1.5e-05 Score=47.22 Aligned_cols=40 Identities=18% Similarity=0.563 Sum_probs=34.3
Q ss_pred HHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEec
Q 034947 14 INLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDD 56 (78)
Q Consensus 14 l~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~d 56 (78)
-.+|+.+..++.+|+|.|.+ |..++|.+.+||.|+ +.|++
T Consensus 11 d~~L~~lrk~k~~Vti~L~n--G~~l~G~I~~fD~f~-vlL~~ 50 (74)
T 2ylb_A 11 DPFLNALRRERVPVSIYLVN--GIKLQGQIESFDQFV-ILLKN 50 (74)
T ss_dssp HHHHHHHHHHTCCEEEEETT--SCEEEEEEEEECSSE-EEEES
T ss_pred HHHHHHHHhcCCcEEEEEeC--CCEEEEEEEEECCcE-EEEEC
Confidence 46888888888899999976 899999999999999 55554
No 31
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=97.87 E-value=1.6e-05 Score=47.63 Aligned_cols=39 Identities=15% Similarity=0.571 Sum_probs=32.7
Q ss_pred HHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEe
Q 034947 14 INLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLD 55 (78)
Q Consensus 14 l~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~ 55 (78)
-.+|+.+-.++.+|+|.|.+ |..++|.+.|||+|+ +.|+
T Consensus 13 d~fLn~lrk~~~~Vtv~L~n--G~~l~G~I~~fD~f~-VlL~ 51 (78)
T 3ahu_A 13 DQFLNQIRKENTYVTVFLLN--GFQLRGQVKGFDNFT-VLLE 51 (78)
T ss_dssp HHHHHHHHHHTCCEEEEETT--SCEEEEEEEEECSSE-EEEE
T ss_pred HHHHHHHHHcCCcEEEEEeC--CeEEEEEEEEEcceE-EEEE
Confidence 35788888778899999976 899999999999999 4444
No 32
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=97.84 E-value=1.9e-05 Score=47.15 Aligned_cols=39 Identities=15% Similarity=0.493 Sum_probs=33.1
Q ss_pred HHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEe
Q 034947 14 INLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLD 55 (78)
Q Consensus 14 l~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~ 55 (78)
-.+|+.+..++.+|+|.|.+ |..++|.+.+||.|+ +.|+
T Consensus 9 d~fLn~lrk~k~~VtI~L~n--G~~l~G~I~~fD~f~-VlL~ 47 (77)
T 1kq1_A 9 DKALENFKANQTEVTVFFLN--GFQMKGVIEEYDKYV-VSLN 47 (77)
T ss_dssp HHHHHHHHHHTCEEEEEETT--SCEEEEEEEEECSSE-EEEE
T ss_pred HHHHHHHHhcCCeEEEEEeC--CCEEEEEEEEECCcE-EEEE
Confidence 35888888888899999976 899999999999999 4444
No 33
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=95.97 E-value=0.011 Score=34.49 Aligned_cols=43 Identities=21% Similarity=0.197 Sum_probs=35.7
Q ss_pred cCh-HHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEec
Q 034947 11 TQP-INLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDD 56 (78)
Q Consensus 11 ~~P-l~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~d 56 (78)
..| ...|..++..+.+|.|.|.+ |..++|.+.-+|.|+ +.|.+
T Consensus 7 ~lPsvR~lQ~~ik~k~~V~I~L~t--G~~l~G~i~WQD~~c-l~L~~ 50 (70)
T 3hfo_A 7 GLPSVRQVQLLIKDQTPVEIKLLT--GDSLFGTIRWQDTDG-LGLVD 50 (70)
T ss_dssp SCHHHHHHHHHHHHTCEEEEEETT--SCEEEEEEEEECSSE-EEEEC
T ss_pred CCCcHHHHHHHHhhCceEEEEecC--CCEEEEEEEEeCCCE-EEEEc
Confidence 345 78999999999898888865 889999999999999 55554
No 34
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=95.87 E-value=0.026 Score=33.07 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=34.9
Q ss_pred HHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEece
Q 034947 14 INLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDA 57 (78)
Q Consensus 14 l~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da 57 (78)
...|..++..+.+|.|+|.+ |..++|.+.-+|.|+ +.|.+.
T Consensus 13 vR~lQ~~Ik~k~~V~I~L~t--Gd~l~G~i~WQD~~c-l~L~~~ 53 (72)
T 3hfn_A 13 IRQLQNLIKQAAPVEIKLVT--GDAITGRVLWQDPTC-VCIADE 53 (72)
T ss_dssp HHHHHHHHSSCCEEEEEETT--SCEEEEEEEEECSSE-EEEEC-
T ss_pred HHHHHHHHhhCceEEEEecC--CCEEEEEEEEECCCE-EEEEcC
Confidence 78999999999898888855 889999999999999 666554
No 35
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=94.09 E-value=0.19 Score=28.96 Aligned_cols=42 Identities=21% Similarity=0.387 Sum_probs=31.1
Q ss_pred HHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEeceEEEE
Q 034947 15 NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61 (78)
Q Consensus 15 ~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da~E~~ 61 (78)
..|.++-+++ |-|.+ ++...|.|+|.-||+-. +.|.|++.+.
T Consensus 9 ktL~~WKg~r--vAv~v--g~ehSFtGiledFDeEv-iLL~dV~D~~ 50 (71)
T 1ycy_A 9 KVLKEWKGHK--VAVSV--GGDHSFTGTLEDFDEEV-ILLKDVVDVI 50 (71)
T ss_dssp HHHHHHTTSE--EEEEE--C----CEEEEEEECSSE-EEEEEEEETT
T ss_pred HHHHHhCCcE--EEEEe--cCcceeeeehhhcCcce-eehhhHHHHh
Confidence 4677888876 66666 77889999999999998 8899999873
No 36
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=87.73 E-value=2.8 Score=25.19 Aligned_cols=55 Identities=22% Similarity=0.298 Sum_probs=39.3
Q ss_pred hhcCcceEEEEEEecCCeEEEEEEEEecccc-ceeEeceEEEEecCC--------eeeeeeEEEEecC
Q 034947 20 FLQSKARIQIWLFEQKDLRIEGRIIGFDEYM-NLVLDDAEEVHIKKN--------TRKPLGFFSKETT 78 (78)
Q Consensus 20 ~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~m-NlvL~da~E~~~~~~--------~~~~lG~ilir~~ 78 (78)
|++++ |.|..+.+.+|+|+|...|.-= -+.|.++.-+-.++. ....+.-|+.||.
T Consensus 11 yIGs~----iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgs 74 (88)
T 2vxe_A 11 ELGSK----ISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGS 74 (88)
T ss_dssp CTTCE----EEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETT
T ss_pred ccCCe----EEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccC
Confidence 78877 6777788999999999998764 588999887733322 1234566777763
No 37
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=83.99 E-value=1.4 Score=28.81 Aligned_cols=50 Identities=20% Similarity=0.346 Sum_probs=31.9
Q ss_pred CccccceeecChHHHHHHhhcCcceEEEEEEe--cCCeEEEEEEEEeccccceeEe
Q 034947 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFE--QKDLRIEGRIIGFDEYMNLVLD 55 (78)
Q Consensus 2 s~~~~~~~~~~Pl~~L~~~~~k~~~V~V~lk~--~~~~~~~G~L~gfD~~mNlvL~ 55 (78)
||+-..++...|-+| .+++++. |.|+++. ++.+++.|+|.++|+-. ++|+
T Consensus 85 SSPGldRpL~~~~df-~r~~G~~--V~V~l~~~~~g~k~~~G~L~~~~~~~-v~l~ 136 (164)
T 1ib8_A 85 TSPGLERPLKTKDAV-AGAVGKY--IHVGLYQAIDKQKVFEGTLLAFEEDE-LTME 136 (164)
T ss_dssp ECCSSSSCCSSHHHH-HHHCSEE--EEEECSSCSSSCSEEEEEEEEEETTE-EEEE
T ss_pred eCCCCCCCCCCHHHH-HHhCCcE--EEEEEecccCCceEEEEEEEEEeCCE-EEEE
Confidence 455444555555554 4778865 7676642 34589999999998653 4443
No 38
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=77.55 E-value=8 Score=22.23 Aligned_cols=48 Identities=25% Similarity=0.212 Sum_probs=31.9
Q ss_pred hhcCcceEEEEEEecCCeEEEEEEEEeccccceeE-eceEEEEecCCeeeeee
Q 034947 20 FLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVL-DDAEEVHIKKNTRKPLG 71 (78)
Q Consensus 20 ~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL-~da~E~~~~~~~~~~lG 71 (78)
.+++. |+++ ..+|+-|-|+++.....-=+|. +|-.|.|..-+..+++|
T Consensus 17 ~~geD--VL~r--w~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv~~kdi~kl~ 65 (69)
T 2xk0_A 17 ALQED--VFIK--CNDGRFYLGTIIDQTSDQYLIRFDDQSEQWCEPDKLRKLG 65 (69)
T ss_dssp CTTCE--EEEE--CTTSCEEEEEEEEECSSCEEEEETTCCEEEECTTTEECSS
T ss_pred ccCCe--EEEE--ecCCCEEEEEEEecCCceEEEEecCCcceeeeHHHHHhhc
Confidence 34544 6555 5779999999977765554443 77777776655555554
No 39
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=73.42 E-value=4 Score=26.01 Aligned_cols=38 Identities=29% Similarity=0.464 Sum_probs=29.6
Q ss_pred HHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeE--eceEE
Q 034947 17 IFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVL--DDAEE 59 (78)
Q Consensus 17 L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL--~da~E 59 (78)
+..|++.. |.|.|++ |..++|++..+|. =+|+| .+|..
T Consensus 7 ~sqFlGy~--V~v~LkD--gs~~qG~I~~vd~-k~LtL~~~~a~~ 46 (125)
T 4a53_A 7 VADFYGSN--VEVLLNN--DSKARGVITNFDS-SNSILQLRLAND 46 (125)
T ss_dssp HHHHTTCE--EEEEETT--SCEEEEEEEEEET-TTTEEEEEETTT
T ss_pred HHHhcCce--EEEEECC--CCEeeEEEEeecC-CeeEEecccccc
Confidence 45688866 8888875 8899999999985 46777 87743
No 40
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=73.21 E-value=2.7 Score=25.60 Aligned_cols=45 Identities=20% Similarity=0.246 Sum_probs=30.6
Q ss_pred ChHHHHHHhhcCcceEEEEEEecCCeEEEEEEEEecccc-ceeEeceEEE
Q 034947 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYM-NLVLDDAEEV 60 (78)
Q Consensus 12 ~Pl~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~m-NlvL~da~E~ 60 (78)
.|..--..|++++ |.|..+.+.+|+|+|...|.-= -+.|.++.-+
T Consensus 9 ~~~~~~~~~IGs~----ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsf 54 (95)
T 2fb7_A 9 EDPSGGTPYIGSK----ISLISKAEIRYEGILYTIDTENSTVALAKVRSF 54 (95)
T ss_dssp -------CCSSEE----EEEEETTTEEEEEEEEEEETTTTEEEEESCCCC
T ss_pred CCCCccCcccCCe----EEEEECCCceEEEEEecccCccCEEEEEeeeEe
Confidence 3445556788976 6777788999999999998543 4788888766
No 41
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=71.13 E-value=7.8 Score=23.08 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=27.9
Q ss_pred HhhcCcceEEEEEEecCCe-EEEEEEEEecccc-ceeEeceE
Q 034947 19 RFLQSKARIQIWLFEQKDL-RIEGRIIGFDEYM-NLVLDDAE 58 (78)
Q Consensus 19 ~~~~k~~~V~V~lk~~~~~-~~~G~L~gfD~~m-NlvL~da~ 58 (78)
+|+++. |.+.. .++. .|+|.|..+|..= ||.|.+|.
T Consensus 6 ~~iGs~--VSi~c--~d~lGvYQG~i~~vd~~~~tItL~~~f 43 (84)
T 2vc8_A 6 DWLGSI--VSINC--GDSLGVYQGRVSAVDQVSQTISLTRPF 43 (84)
T ss_dssp TTTTCE--EEEEC--CTTTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred cccCCE--EEEEE--CCCceEEEEEEEEeccCCCeEEEehhh
Confidence 578865 55555 4566 8999999999874 79999984
No 42
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=63.02 E-value=14 Score=25.49 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=23.6
Q ss_pred ceEEEEEEecCCeEEEEEEEEeccccceeEece
Q 034947 25 ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDA 57 (78)
Q Consensus 25 ~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da 57 (78)
++|.|.. .++..+.|+..|+|+.=.|+++..
T Consensus 225 ~~V~v~~--~~~~~~~G~~~gId~~G~L~v~~~ 255 (270)
T 3rux_A 225 SRVRVEL--PGGQDVVGIARDIDDQGRLCLDVG 255 (270)
T ss_dssp SEEEEEC--TTSCEEEEEEEEECTTSCEEEEET
T ss_pred CEEEEEE--CCCeEEEEEEEEECCCCeEEEEEC
Confidence 3465543 446789999999999999998754
No 43
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=53.44 E-value=51 Score=22.88 Aligned_cols=45 Identities=20% Similarity=0.143 Sum_probs=30.4
Q ss_pred ceEEEEEEecCCeEEEEEEEEeccccceeEeceEEEEecCCeeeeeeEEEEec
Q 034947 25 ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGFFSKET 77 (78)
Q Consensus 25 ~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da~E~~~~~~~~~~lG~ilir~ 77 (78)
++|.|.. . +..+.|+..|+|+.=.|++++.. +.....-|+|.+|.
T Consensus 274 ~~V~v~~--~-~~~~~G~~~gid~~G~L~v~~~~-----g~~~~~~Gev~~r~ 318 (321)
T 1bia_A 274 RPVKLII--G-DKEIFGISRGIDKQGALLLEQDG-----IIKPWMGGEISLRS 318 (321)
T ss_dssp SEEEEEE--T-TEEEEEEEEEECTTSCEEEEETT-----EEEEESSCEEEEC-
T ss_pred CEEEEEE--C-CcEEEEEEEEECCCCeEEEEECC-----CEEEEEeeeEEEec
Confidence 4566653 3 56899999999999999987432 22334557777764
No 44
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=50.36 E-value=12 Score=25.16 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=28.4
Q ss_pred ceEEEEEEecCCeEEEEEEEEeccccceeEeceEEEEecCCeeeeeeEEEEec
Q 034947 25 ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGFFSKET 77 (78)
Q Consensus 25 ~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da~E~~~~~~~~~~lG~ilir~ 77 (78)
++|.+.. . +. +.|+..|+|+.=.|++++.. +.....-|+|.+|+
T Consensus 189 ~~V~v~~--~-~~-~~G~~~gId~~G~L~v~~~~-----G~~~~~~Gev~~r~ 232 (233)
T 2eay_A 189 EEVKLLG--E-GK-ITGKLVGLSEKGGALILTEE-----GIKEILSGEFSLRR 232 (233)
T ss_dssp SEEEETT--E-EE-EEEEEEEECTTSCEEEEETT-----EEEEECSCCEEEC-
T ss_pred CEEEEEE--C-Ce-EEEEEEEECCCCeEEEEECC-----CeEEEEEeEEEEec
Confidence 3465543 2 34 99999999999999987421 11234457777765
No 45
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=41.17 E-value=47 Score=22.18 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCeEEEEEEEEeccccceeEec
Q 034947 25 ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDD 56 (78)
Q Consensus 25 ~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~d 56 (78)
++|.+.. .++..+.|+..|+|+.=.|+ ++
T Consensus 193 ~~V~v~~--~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 193 KQVKILL--SNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp CEEEEEE--TTSCEEEEEEEEECSSEEEE-EE
T ss_pred CEEEEEE--CCCeEEEEEEEEECCCCeEE-Ec
Confidence 4566654 44444999999999999998 64
No 46
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=40.89 E-value=55 Score=19.33 Aligned_cols=56 Identities=9% Similarity=0.083 Sum_probs=36.7
Q ss_pred ChHHHHHHhhcCcceEEEEEEecCCeEEEEEEEEecccc-ceeEeceEEEEecCCeeeeeeEEEEec
Q 034947 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYM-NLVLDDAEEVHIKKNTRKPLGFFSKET 77 (78)
Q Consensus 12 ~Pl~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~m-NlvL~da~E~~~~~~~~~~lG~ilir~ 77 (78)
.-+.+|....++ +|.+.+.+ +.++.|...++|... |+..++- +. ....+...+||+
T Consensus 19 RfLr~l~~m~~~--~v~f~m~E--~t~V~a~F~a~d~d~~~f~Vs~L-~T-----PiGv~~eAlLR~ 75 (85)
T 1y96_B 19 RYLRSLLAMVGH--QVSFTLHE--GVRVAAHFGATDLDVANFYVSQL-QT-----PIGVQAEALLRC 75 (85)
T ss_dssp HHHHHHHHHTTS--EEEEEEGG--GCEEEEEEEEECTTCCEEEEEEE-CC-----TTCCEEEEEEEG
T ss_pred HHHHHHHHhCCC--ceEEEEeC--CeEEEEEEEecCcccceeEhhhc-CC-----Ccccchhhhhhc
Confidence 346677777775 58888866 788999999999765 5554431 11 123355566664
No 47
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=40.52 E-value=1.7 Score=26.66 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=26.9
Q ss_pred cChHHHHHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEeceE
Q 034947 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAE 58 (78)
Q Consensus 11 ~~Pl~~L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da~ 58 (78)
..-.+++..++. |-..+ | |....||.-.|+.||+|.
T Consensus 17 ~~~Ael~s~lVe-------WqY~d-~----~~~~~FDk~TNl~LEeA~ 52 (99)
T 1x4r_A 17 ESQADYISTYVE-------WQYID-K----NITQCFDKMTNMKLEVAW 52 (99)
T ss_dssp THHHHHHHTSCE-------EEEEC-S----SCEEECCTTHHHHHHHHH
T ss_pred HHHHHHHHHhhE-------EEEeC-C----CeEeechHHHHHHHHHHH
Confidence 344566666654 76654 4 679999999999999987
No 48
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.73 E-value=64 Score=22.86 Aligned_cols=52 Identities=13% Similarity=0.256 Sum_probs=34.7
Q ss_pred CCccccceeecChHHH---HHHhhcCcceEEEEEEecCCeEEEEEEEEeccccceeEeceEEEE
Q 034947 1 MASTKVQRIMTQPINL---IFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61 (78)
Q Consensus 1 ms~~~~~~~~~~Pl~~---L~~~~~k~~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da~E~~ 61 (78)
||-. .++....|+-+ +..|... +.+...++.|.|.|.+.==.+-+.||.+..
T Consensus 1 ~s~~-~~~V~vhPlVll~I~dH~~R~--------~~~~~~rViG~LLG~~~~~~veV~nsF~~p 55 (338)
T 4b4t_U 1 MSLQ-HEKVTIAPLVLLSALDHYERT--------QTKENKRCVGVILGDANSSTIRVTNSFALP 55 (338)
T ss_dssp -CCC-CSEEEECHHHHHHHHHHHHHH--------TTTCCSCCEEEEEEEECSSEEEEEEEEECC
T ss_pred CCCC-CCEEEEecHHHHHHHHHHHHh--------hcCCCCeEEEEEEeEEcCCEEEEEEEEEec
Confidence 6776 46777888554 4455421 113345688999999776778889998874
No 49
>3sgr_A Tandem repeat of amyloid-related segment of alpha crystallin residues 90-100 mutant...; amyloid oligomer, beta cylindrin, protein fibril; 2.17A {Homo sapiens}
Probab=35.03 E-value=36 Score=15.44 Aligned_cols=19 Identities=42% Similarity=0.345 Sum_probs=11.6
Q ss_pred eEeceEEEEecCCeeeeeeEEE
Q 034947 53 VLDDAEEVHIKKNTRKPLGFFS 74 (78)
Q Consensus 53 vL~da~E~~~~~~~~~~lG~il 74 (78)
||.|+.|. +..-+.+|+++
T Consensus 5 vlgdviev---ggklkvlgdvi 23 (25)
T 3sgr_A 5 VLGDVIEV---GGKLKVLGDVI 23 (26)
T ss_dssp EEEEEEEE---TTEEEEEEEEE
T ss_pred Eeeeeeee---CcEEEEeeeEE
Confidence 56777776 33455677664
No 50
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=34.10 E-value=46 Score=20.32 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=20.0
Q ss_pred CeEEEEEEEEe---ccccceeEeceEEE
Q 034947 36 DLRIEGRIIGF---DEYMNLVLDDAEEV 60 (78)
Q Consensus 36 ~~~~~G~L~gf---D~~mNlvL~da~E~ 60 (78)
...++|.|.-| |+.+.++|.|++=.
T Consensus 54 k~sfKG~L~tYrfcDnVWTf~lkd~~fk 81 (108)
T 1nvp_D 54 RVNFRGSLNTYRFCDNVWTFVLNDVEFR 81 (108)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCeEeeccCCccccCcEEEEEEeceEEE
Confidence 46688988554 99999999998754
No 51
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=32.65 E-value=82 Score=22.98 Aligned_cols=29 Identities=17% Similarity=0.371 Sum_probs=23.5
Q ss_pred eEEEEEEecCCeEEEEEEEEeccccceeEec
Q 034947 26 RIQIWLFEQKDLRIEGRIIGFDEYMNLVLDD 56 (78)
Q Consensus 26 ~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~d 56 (78)
.|.|.+ .+++++.+++.++|...+|.+=.
T Consensus 112 ~i~V~~--~dg~~~~a~vv~~d~~~DlAvlk 140 (448)
T 1ky9_A 112 VIKVQL--SDGRKFDAKMVGKDPRSDIALIQ 140 (448)
T ss_dssp EEEEEE--TTSCEEEEEEEEEETTTTEEEEE
T ss_pred EEEEEE--CCCCEEEEEEEEEcCCCCEEEEE
Confidence 466666 56899999999999999987643
No 52
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=32.48 E-value=79 Score=22.87 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=24.3
Q ss_pred ceEEEEEEecCCeEEEEEEEEeccccceeEece
Q 034947 25 ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDA 57 (78)
Q Consensus 25 ~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~da 57 (78)
..+.|.+ .+++.+.+++.++|...+|.|=..
T Consensus 88 ~~i~V~~--~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 88 QKISIQL--NDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CEEEEEe--CCCCEEEEEEEEEcCCCCEEEEEe
Confidence 3466666 558999999999999999876543
No 53
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=31.62 E-value=59 Score=19.63 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=21.7
Q ss_pred HHHHHHhhcCcceEEEEEEecCCeEEEEEE
Q 034947 14 INLIFRFLQSKARIQIWLFEQKDLRIEGRI 43 (78)
Q Consensus 14 l~~L~~~~~k~~~V~V~lk~~~~~~~~G~L 43 (78)
++-+...++-..+|.+.|. +|..+.|++
T Consensus 18 Le~~~~~LdGq~~v~i~l~--DGs~l~GTv 45 (101)
T 2e12_A 18 LEHWVKLLDGQERVRIELD--DGSMIAGTV 45 (101)
T ss_dssp HHHHHHTSCTTCEEEEEET--TSCEEEEEE
T ss_pred HHHHHHhhCCeeEEEEEEc--CCCeEeeee
Confidence 5667777887778888885 488899986
No 54
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=31.19 E-value=54 Score=20.49 Aligned_cols=25 Identities=12% Similarity=0.457 Sum_probs=20.2
Q ss_pred CeEEEEEEEEe---ccccceeEeceEEE
Q 034947 36 DLRIEGRIIGF---DEYMNLVLDDAEEV 60 (78)
Q Consensus 36 ~~~~~G~L~gf---D~~mNlvL~da~E~ 60 (78)
...++|.|.-| |+.+.++|.|++=.
T Consensus 58 k~sfKG~L~tYrfcDnVWtfilkd~~fk 85 (121)
T 1nh2_D 58 KLTVKGNLDTYGFCDDVWTFIVKNCQVT 85 (121)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCeEEeeeccccccCcEEEEEEeceEEE
Confidence 46688988655 99999999998854
No 55
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=29.66 E-value=73 Score=17.52 Aligned_cols=35 Identities=14% Similarity=0.078 Sum_probs=24.5
Q ss_pred EEEEEEecCCeEEEEEEEEecccc---ceeEeceEEEEec
Q 034947 27 IQIWLFEQKDLRIEGRIIGFDEYM---NLVLDDAEEVHIK 63 (78)
Q Consensus 27 V~V~lk~~~~~~~~G~L~gfD~~m---NlvL~da~E~~~~ 63 (78)
|++ +..+|+-|-|+++.+|..- =+..+|..+.+..
T Consensus 10 VLa--rwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~ 47 (58)
T 4hcz_A 10 VLA--RWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVL 47 (58)
T ss_dssp EEE--ECTTSCEEEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred EEE--EecCCCEEeEEEEEEecCCCEEEEEEcCCCeEEEE
Confidence 555 4477999999999987652 3455676666643
No 56
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=25.04 E-value=98 Score=21.67 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCeEEEEEEEEeccccceeEec
Q 034947 25 ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDD 56 (78)
Q Consensus 25 ~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~d 56 (78)
++|.|.. + +..+.|+..|+|+.=.|++++
T Consensus 280 ~~V~v~~--~-~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 280 RTLLFTE--N-DKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp SCEEEEC--C--CEEEEEEEEECTTSCEEEEE
T ss_pred CEEEEEE--C-CeEEEEEEEEECCCCEEEEEE
Confidence 3465543 3 467999999999999999863
No 57
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=23.64 E-value=58 Score=21.77 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=20.1
Q ss_pred ceEEEEEEecCCeEEEEEEEEeccccceeEec
Q 034947 25 ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDD 56 (78)
Q Consensus 25 ~~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~d 56 (78)
++|.+.. .++ +.|+..|+|+.=.|++++
T Consensus 190 ~~V~v~~--~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 190 VRVKILG--DGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp SEEEC------C--CEEEEEEECTTSCEEEEC
T ss_pred CeEEEEE--CCe--EEEEEEEECCCCEEEEEE
Confidence 4566654 334 899999999999999975
No 58
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=22.53 E-value=1.3e+02 Score=21.00 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=22.5
Q ss_pred eEEEEEEecCCeEEEEEEEEeccccceeEec
Q 034947 26 RIQIWLFEQKDLRIEGRIIGFDEYMNLVLDD 56 (78)
Q Consensus 26 ~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~d 56 (78)
.+.|.+ .+++.+.+.+.++|...+|.|=.
T Consensus 89 ~i~V~~--~dg~~~~a~vv~~d~~~DlAlLk 117 (345)
T 3stj_A 89 KISIQL--NDGREFDAKLIGSDDQSDIALLQ 117 (345)
T ss_dssp EEEEEC--TTSCEEEEEEEEEETTTTEEEEE
T ss_pred EEEEEe--CCCcEEEEEEEEEcCCCCEEEEE
Confidence 455555 66899999999999999887643
No 59
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=21.69 E-value=1.7e+02 Score=19.88 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=22.6
Q ss_pred eEEEEEEecCCeEEEEEEEEeccccceeEec
Q 034947 26 RIQIWLFEQKDLRIEGRIIGFDEYMNLVLDD 56 (78)
Q Consensus 26 ~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~d 56 (78)
.+.|.+ .++..+.+.+.++|...+|.|=.
T Consensus 67 ~i~V~~--~~g~~~~a~v~~~d~~~DlAllk 95 (318)
T 1te0_A 67 QIIVAL--QDGRVFEALLVGSDSLTDLAVLI 95 (318)
T ss_dssp EEEEEC--TTSCEEEEEEEEEETTTTEEEEE
T ss_pred EEEEEe--CCCCEEEEEEEEeCCCceEEEEE
Confidence 455655 56889999999999998887643
No 60
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=20.08 E-value=1.9e+02 Score=19.77 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=22.6
Q ss_pred eEEEEEEecCCeEEEEEEEEeccccceeEec
Q 034947 26 RIQIWLFEQKDLRIEGRIIGFDEYMNLVLDD 56 (78)
Q Consensus 26 ~V~V~lk~~~~~~~~G~L~gfD~~mNlvL~d 56 (78)
.+.|.+ .+++.+.+.+.++|...+|.|=.
T Consensus 72 ~i~V~~--~~g~~~~a~v~~~d~~~DlAllk 100 (325)
T 1lcy_A 72 RVRVRL--LSGDTYEAVVTAVDPVADIATLR 100 (325)
T ss_dssp EEEEEC--TTSCEEEEEEEEEETTTTEEEEE
T ss_pred EEEEEe--CCCCEEEEEEEEECCCCCEEEEE
Confidence 466665 56889999999999988887643
Done!