BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034948
         (78 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WVK|A Chain A, Nmr Solution Structure Of The Partially Disordered
          Protein At2g23090 From Arabidopsis Thaliana
          Length = 86

 Score =  139 bits (350), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 66/77 (85%), Positives = 70/77 (90%)

Query: 2  GGGNGQKAKMAREKNLEKQKAANKGSQLETNKKAMSIQCKVCMQTFMCTTSEVKCREHAE 61
          GGGN QK+ MAR KNLEK KAA KGSQLE NKKAMSIQCKVCMQTF+CTTSEVKCREHAE
Sbjct: 10 GGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAE 69

Query: 62 AKHPKSDIYACFPHLKK 78
          AKHPK+D+ ACFPHLKK
Sbjct: 70 AKHPKADVVACFPHLKK 86


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.124    0.367 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,123,567
Number of Sequences: 62578
Number of extensions: 55513
Number of successful extensions: 86
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 3
length of query: 78
length of database: 14,973,337
effective HSP length: 47
effective length of query: 31
effective length of database: 12,032,171
effective search space: 372997301
effective search space used: 372997301
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)