BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034952
(78 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DY0|A Chain A, Crystal Structure Of Project Jw0458 From Escherichia Coli
pdb|2DY0|B Chain B, Crystal Structure Of Project Jw0458 From Escherichia Coli
Length = 190
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 40/52 (76%)
Query: 6 EIISEEYSLEYGKDVMEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRF 57
E ISE Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A ++L+ R
Sbjct: 101 ETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRL 152
>pdb|1ORE|A Chain A, Human Adenine Phosphoribosyltransferase
pdb|1ZN7|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN7|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN8|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN8|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN9|A Chain A, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
pdb|1ZN9|B Chain B, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
Length = 180
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 37/53 (69%)
Query: 5 GEIISEEYSLEYGKDVMEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRF 57
G + YSLEYGK +E+ A++ G+R ++VDDL+ATGGT+ AA LLGR
Sbjct: 94 GPTLWASYSLEYGKAELEIQKDALEPGQRVVVVDDLLATGGTMNAACELLGRL 146
>pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani.
pdb|1QB8|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCC|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCD|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
Length = 236
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 7 IISEEYSLEYGK---DVMEMHVCAVQAGERALIVDDLVATGGTLFAAIRLL 54
I SE Y EY + +VM + ++ G R +++DD++ATGGT + ++L+
Sbjct: 111 IRSEPYEKEYKEAAPEVMTIRYGSIGKGSRVVLIDDVLATGGTALSGLQLV 161
>pdb|1G2Q|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2Q|B Chain B, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2P|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
Length = 187
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 5 GEIISEEYSLEYGKDVMEMHVCAVQAGERALIVDDLV 41
GE Y EYG D+ E+ A+ AG +IVDD++
Sbjct: 96 GECFKATYEKEYGSDLFEIQKNAIPAGSNVIIVDDII 132
>pdb|1MZV|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
(Aprt) From Leishmania Tarentolae
Length = 235
Score = 33.9 bits (76), Expect = 0.025, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 7 IISEEYSLEYGK---DVMEMHVCAVQAGERALIVDDLVATGGTLFAAIRLL 54
I SE Y EY + +VM + ++ R +++DD++ATGGT + ++L+
Sbjct: 112 IRSEPYEKEYKEAAPEVMTIRHGSIGKNSRVVLIDDVLATGGTALSGLQLV 162
>pdb|1L1Q|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine
pdb|1L1R|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine, Mg2+ And Prpp
Length = 186
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 5 GEIISEEYSLEYGKDV-MEMHVCAVQAGERALIVDDLVATGGTLFAAIRL 53
G++ + +EY K V +E+ + + L+ DD++ATGGTL AAI L
Sbjct: 90 GDVCKCTFDMEYQKGVTIEVQKRQLGPHDVVLLHDDVLATGGTLLAAIEL 139
>pdb|1U9Y|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Z|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
Length = 284
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 35 LIVDDLVATGGTLFAAIRLL 54
IVDD+++TGGT+ A++LL
Sbjct: 209 FIVDDIISTGGTMATAVKLL 228
>pdb|3MBI|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|C Chain C, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|D Chain D, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
Length = 287
Score = 30.0 bits (66), Expect = 0.36, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 21 MEMHVCAVQA-GERALIVDDLVATGGTLFAAIRLL 54
+EM V V G++ LIVDD+++TGGT+ + LL
Sbjct: 194 VEMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLL 228
>pdb|3LPN|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LPN|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LRT|A Chain A, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3LRT|B Chain B, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3NAG|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
pdb|3NAG|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
Length = 286
Score = 30.0 bits (66), Expect = 0.36, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 21 MEMHVCAVQA-GERALIVDDLVATGGTLFAAIRLL 54
+EM V V G++ LIVDD+++TGGT+ + LL
Sbjct: 192 VEMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLL 226
>pdb|2EHJ|A Chain A, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|B Chain B, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|C Chain C, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|D Chain D, Structure Of Uracil Phosphoribosyl Transferase
Length = 208
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 34 ALIVDDLVATGGTLFAAIRLLGR 56
ALIVD ++ATGG++ A I LL +
Sbjct: 126 ALIVDPMLATGGSVIATIDLLKK 148
>pdb|1O57|A Chain A, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|B Chain B, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|C Chain C, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|D Chain D, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
Length = 291
Score = 28.9 bits (63), Expect = 0.74, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 27 AVQAGERALIVDDLVATGGTLFAAIRLLGRF 57
+++ G LI+DD + GGT+ I LL F
Sbjct: 192 SMKTGSNVLIIDDFMKAGGTINGMINLLDEF 222
>pdb|1P4A|A Chain A, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|B Chain B, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|C Chain C, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|D Chain D, Crystal Structure Of The Purr Complexed With Cprpp
Length = 285
Score = 28.9 bits (63), Expect = 0.74, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 27 AVQAGERALIVDDLVATGGTLFAAIRLLGRF 57
+++ G LI+DD + GGT+ I LL F
Sbjct: 192 SMKTGSNVLIIDDFMKAGGTINGMINLLDEF 222
>pdb|3QW4|B Chain B, Structure Of Leishmania Donovani Ump Synthase
pdb|3QW4|C Chain C, Structure Of Leishmania Donovani Ump Synthase
Length = 453
Score = 28.9 bits (63), Expect = 0.75, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 29 QAGERALIVDDLVATGGTLFAAIRLL 54
+ G+R +I+DDLV+TG T AI L
Sbjct: 363 KKGDRVVIIDDLVSTGETKVEAIEKL 388
>pdb|3DEZ|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
pdb|3DEZ|B Chain B, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
Length = 243
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 2 VPLGEIISEEYSL--EYGKDVMEMHVCA------VQAGERALIVDDLVATGGTLFAAI 51
+P G II+++ +L Y + + H V G++ +I++DL++TGG++ A+
Sbjct: 112 IPHGAIIADKMNLPLAYIRSKPKDHGAGNQIEGRVTKGQKMVIIEDLISTGGSVLDAV 169
>pdb|2AEE|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Pyogenes
pdb|2AEE|B Chain B, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Pyogenes
Length = 211
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 8/55 (14%)
Query: 2 VPLGEIISEEYSLEYG--KDVMEMHVCAVQ------AGERALIVDDLVATGGTLF 48
+P G II+++ +L + + + H Q G++ +I++DL++TGG++
Sbjct: 80 IPHGAIIADKMTLPFAYIRSKPKDHGAGNQIEGRVLKGQKMVIIEDLISTGGSVL 134
>pdb|2E4H|A Chain A, Solution Structure Of Cytoskeletal Protein In Complex
With Tubulin Tail
Length = 98
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 27 AVQAGERALIVDDLVATGGTLFAAIRLLG 55
+++ GER L + D V GGT +R LG
Sbjct: 2 SIKKGERELKIGDRVLVGGTKAGVVRFLG 30
>pdb|2CP6|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Clip- 170RESTIN
Length = 172
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 27 AVQAGERALIVDDLVATGGTLFAAIRLLG 55
+++ GER L + D V GGT +R LG
Sbjct: 31 SIKKGERELKIGDRVLVGGTKAGVVRFLG 59
>pdb|3LW5|G Chain G, Improved Model Of Plant Photosystem I
Length = 95
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 7/38 (18%)
Query: 34 ALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMV 71
AL++ ++TG +LF LGRFV FNF E K V
Sbjct: 2 ALVIS--LSTGLSLF-----LGRFVFFNFQRENVAKQV 32
>pdb|3M3H|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor'
pdb|3OSC|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
Length = 234
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 28 VQAGERALIVDDLVATGGTLF--------AAIRLLGRFVSFNFHLE 65
+ G++ ++V+DL++TGG+ A +LG F + LE
Sbjct: 134 AEKGQKVVVVEDLISTGGSAITCVEALREAGCEVLGIVSIFTYELE 179
>pdb|2WSC|G Chain G, Improved Model Of Plant Photosystem I
pdb|2WSE|G Chain G, Improved Model Of Plant Photosystem I
pdb|2WSF|G Chain G, Improved Model Of Plant Photosystem I
Length = 167
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 33 RALIVDDLV---ATGGTLFAAIRLLGRFVSFNFHLERCQKMV 71
RA + LV +TG +LF LGRFV FNF E K V
Sbjct: 68 RAELSPSLVISLSTGLSLF-----LGRFVFFNFQRENMAKQV 104
>pdb|2O01|G Chain G, The Structure Of A Plant Photosystem I Supercomplex At
3.4 Angstrom Resolution
Length = 95
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 41 VATGGTLFAAIRLLGRFVSFNFHLERCQKMV 71
++TG +LF LGRFV FNF E K V
Sbjct: 7 LSTGLSLF-----LGRFVFFNFQRENMAKQV 32
>pdb|3OZF|A Chain A, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZF|B Chain B, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZF|C Chain C, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZF|D Chain D, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZG|A Chain A, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
pdb|3OZG|B Chain B, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
pdb|3OZG|C Chain C, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
pdb|3OZG|D Chain D, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
Length = 250
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 14/52 (26%)
Query: 6 EIISEEYSLEYGKDVMEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRF 57
EI+SE+ S GK V LIV+D++ TG TL L +F
Sbjct: 145 EIVSEDLSCLKGKHV--------------LIVEDIIDTGKTLVKFCEYLKKF 182
>pdb|2E55|A Chain A, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|B Chain B, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|C Chain C, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|D Chain D, Structure Of Aq2163 Protein From Aquifex Aeolicus
Length = 208
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 14 LEYGKDVMEMHVCAVQ----AGERALIVDDLVATGGTLFAAIR 52
++ ++ +E H+ + G+ +I+D ++ATGGTL A+R
Sbjct: 100 IKRNEETLESHIYYSRLPELKGKIVVILDPMLATGGTLEVALR 142
>pdb|1NUL|A Chain A, Xprtase From E. Coli
pdb|1NUL|B Chain B, Xprtase From E. Coli
pdb|1A95|A Chain A, Xprtase From E. Coli Complexed With Mg:cprpp And Guanine
pdb|1A95|B Chain B, Xprtase From E. Coli Complexed With Mg:cprpp And Guanine
pdb|1A95|C Chain C, Xprtase From E. Coli Complexed With Mg:cprpp And Guanine
pdb|1A95|D Chain D, Xprtase From E. Coli Complexed With Mg:cprpp And Guanine
pdb|1A96|A Chain A, Xprtase From E. Coli With Bound Cprpp And Xanthine
pdb|1A96|B Chain B, Xprtase From E. Coli With Bound Cprpp And Xanthine
pdb|1A96|C Chain C, Xprtase From E. Coli With Bound Cprpp And Xanthine
pdb|1A96|D Chain D, Xprtase From E. Coli With Bound Cprpp And Xanthine
Length = 152
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 31 GERALIVDDLVATGGTLFA 49
GE +++DDLV TGGT A
Sbjct: 81 GEGFIVIDDLVDTGGTAVA 99
>pdb|1A97|A Chain A, Xprtase From E. Coli Complexed With Gmp
pdb|1A97|B Chain B, Xprtase From E. Coli Complexed With Gmp
pdb|1A97|C Chain C, Xprtase From E. Coli Complexed With Gmp
pdb|1A97|D Chain D, Xprtase From E. Coli Complexed With Gmp
Length = 148
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 31 GERALIVDDLVATGGTLFA 49
GE +++DDLV TGGT A
Sbjct: 79 GEGFIVIDDLVDTGGTAVA 97
>pdb|1A98|A Chain A, Xprtase From E. Coli Complexed With Gmp
pdb|1A98|B Chain B, Xprtase From E. Coli Complexed With Gmp
Length = 152
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 31 GERALIVDDLVATGGTLFA 49
GE +++DDLV TGGT A
Sbjct: 81 GEGFIVIDDLVDTGGTAVA 99
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 4 LGEIISEEYSLEYGKDVMEMHVCAVQAG 31
+G +I+ YS+ YG M+M +C AG
Sbjct: 384 MGFVINAIYSMAYGLHNMQMSLCPGYAG 411
>pdb|1CJB|A Chain A, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|B Chain B, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|C Chain C, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|D Chain D, Malarial Purine Phosphoribosyltransferase
Length = 231
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 31 GERALIVDDLVATGGTLFAAIRLLGRF 57
G+ LIV+D++ TG TL L +F
Sbjct: 137 GKHVLIVEDIIDTGKTLVKFCEYLKKF 163
>pdb|3DAH|A Chain A, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|B Chain B, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|C Chain C, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
Length = 319
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 23 MHVCAVQAGERALIVDDLVATGGTLFAAIRLL 54
M++ G +I+DD+V T GTL A ++L
Sbjct: 208 MNIIGEVEGRTCVIMDDMVDTAGTLCKAAQVL 239
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.143 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,122,293
Number of Sequences: 62578
Number of extensions: 64634
Number of successful extensions: 259
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 229
Number of HSP's gapped (non-prelim): 36
length of query: 78
length of database: 14,973,337
effective HSP length: 47
effective length of query: 31
effective length of database: 12,032,171
effective search space: 372997301
effective search space used: 372997301
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)