Query 034952
Match_columns 78
No_of_seqs 134 out of 1180
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 07:58:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034952.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034952hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1712 Adenine phosphoribosyl 99.8 5.7E-21 1.2E-25 132.3 8.0 72 3-77 94-165 (183)
2 PLN02293 adenine phosphoribosy 99.6 2E-15 4.4E-20 105.0 9.8 71 3-76 97-167 (187)
3 COG0503 Apt Adenine/guanine ph 99.6 3.1E-15 6.8E-20 103.3 9.0 72 3-77 88-159 (179)
4 TIGR01744 XPRTase xanthine pho 99.6 1.6E-14 3.4E-19 100.9 9.1 64 9-76 96-159 (191)
5 PRK02304 adenine phosphoribosy 99.6 3.4E-14 7.4E-19 96.8 8.8 68 5-75 88-155 (175)
6 TIGR01743 purR_Bsub pur operon 99.5 3.7E-14 8E-19 103.9 9.0 71 2-75 163-235 (268)
7 TIGR01090 apt adenine phosphor 99.5 5.1E-14 1.1E-18 95.6 9.1 69 4-75 82-150 (169)
8 PRK09213 pur operon repressor; 99.5 3.6E-14 7.8E-19 104.0 8.7 71 2-75 165-237 (271)
9 PRK09219 xanthine phosphoribos 99.5 5.9E-14 1.3E-18 97.9 8.7 57 17-76 103-159 (189)
10 PRK12560 adenine phosphoribosy 99.5 1.2E-13 2.6E-18 95.8 8.1 60 14-76 95-156 (187)
11 PRK13810 orotate phosphoribosy 99.5 3E-13 6.4E-18 94.2 7.9 64 7-75 100-163 (187)
12 PRK13812 orotate phosphoribosy 99.4 1.2E-12 2.5E-17 90.3 7.8 63 7-74 85-147 (176)
13 COG0461 PyrE Orotate phosphori 99.4 1.1E-12 2.5E-17 92.8 7.8 63 6-74 89-152 (201)
14 PRK13811 orotate phosphoribosy 99.4 3.7E-12 8E-17 87.1 8.0 61 8-74 84-144 (170)
15 PRK13809 orotate phosphoribosy 99.4 4.6E-12 9.9E-17 89.5 8.3 63 8-74 95-158 (206)
16 PRK08558 adenine phosphoribosy 99.3 6.4E-12 1.4E-16 90.2 8.6 53 20-75 165-217 (238)
17 TIGR00336 pyrE orotate phospho 99.3 5.7E-12 1.2E-16 86.0 7.5 61 10-75 89-149 (173)
18 PRK05500 bifunctional orotidin 99.3 9.1E-12 2E-16 97.1 7.8 64 7-75 371-434 (477)
19 PF00156 Pribosyltran: Phospho 99.3 2.5E-11 5.4E-16 76.6 7.9 47 22-71 79-125 (125)
20 PRK07322 adenine phosphoribosy 99.2 1.1E-10 2.3E-15 80.2 9.3 44 29-75 118-161 (178)
21 TIGR00201 comF comF family pro 99.2 4.5E-11 9.8E-16 82.3 6.2 48 20-71 142-189 (190)
22 PRK06031 phosphoribosyltransfe 99.2 9.4E-11 2E-15 84.2 7.9 45 28-75 151-195 (233)
23 PRK02277 orotate phosphoribosy 99.2 8.7E-11 1.9E-15 82.0 6.3 44 29-75 138-181 (200)
24 TIGR01367 pyrE_Therm orotate p 99.1 1.3E-10 2.9E-15 80.7 6.5 45 27-74 101-145 (187)
25 PRK00455 pyrE orotate phosphor 99.1 3.2E-10 7E-15 78.8 8.0 56 13-74 97-153 (202)
26 PRK09162 hypoxanthine-guanine 99.1 5.6E-10 1.2E-14 76.8 8.4 45 28-75 94-138 (181)
27 TIGR01203 HGPRTase hypoxanthin 99.0 9.8E-10 2.1E-14 74.8 7.0 45 28-75 81-125 (166)
28 PLN02238 hypoxanthine phosphor 99.0 1.5E-09 3.2E-14 75.5 7.0 45 28-75 94-138 (189)
29 COG1040 ComFC Predicted amidop 99.0 1.1E-09 2.3E-14 78.1 6.3 51 19-73 173-223 (225)
30 COG0856 Orotate phosphoribosyl 99.0 1E-09 2.2E-14 77.4 5.3 46 29-77 139-184 (203)
31 PRK05205 bifunctional pyrimidi 99.0 1.7E-09 3.7E-14 73.8 6.0 42 29-73 93-135 (176)
32 PRK11595 DNA utilization prote 99.0 1.4E-09 3E-14 77.0 5.4 41 29-72 185-225 (227)
33 PTZ00149 hypoxanthine phosphor 98.9 1.1E-08 2.3E-13 74.2 8.6 44 29-75 148-191 (241)
34 PRK15423 hypoxanthine phosphor 98.9 1.1E-08 2.3E-13 70.9 7.0 45 28-75 89-133 (178)
35 PRK07199 phosphoribosylpyropho 98.8 5.1E-08 1.1E-12 72.1 8.5 40 28-70 208-247 (301)
36 PRK02269 ribose-phosphate pyro 98.7 2.1E-08 4.6E-13 74.7 5.1 38 29-69 215-252 (320)
37 PTZ00271 hypoxanthine-guanine 98.7 5.6E-08 1.2E-12 69.1 7.0 45 28-75 115-159 (211)
38 PRK00934 ribose-phosphate pyro 98.7 2.8E-08 6.1E-13 72.7 5.3 40 29-71 202-241 (285)
39 PLN02297 ribose-phosphate pyro 98.7 5.7E-08 1.2E-12 72.9 6.6 51 17-70 216-266 (326)
40 PRK09246 amidophosphoribosyltr 98.7 3E-08 6.5E-13 77.6 5.2 39 29-70 356-394 (501)
41 PRK08525 amidophosphoribosyltr 98.7 5E-08 1.1E-12 75.4 6.3 38 29-69 338-375 (445)
42 PRK04923 ribose-phosphate pyro 98.6 1.2E-07 2.7E-12 70.7 7.5 38 29-69 215-252 (319)
43 PRK07272 amidophosphoribosyltr 98.6 5.6E-08 1.2E-12 76.1 5.8 40 28-70 347-386 (484)
44 TIGR01091 upp uracil phosphori 98.6 1.7E-07 3.7E-12 65.8 7.6 43 29-74 120-162 (207)
45 PRK00129 upp uracil phosphorib 98.6 2.4E-07 5.3E-12 65.0 7.8 43 29-74 122-164 (209)
46 PRK02458 ribose-phosphate pyro 98.6 6.3E-08 1.4E-12 72.3 4.9 38 29-69 216-253 (323)
47 PLN02440 amidophosphoribosyltr 98.6 7.6E-08 1.6E-12 75.0 5.3 40 29-71 338-377 (479)
48 PRK00553 ribose-phosphate pyro 98.6 1E-07 2.2E-12 71.5 5.3 38 29-69 216-253 (332)
49 TIGR01134 purF amidophosphorib 98.6 9.1E-08 2E-12 73.8 5.2 39 29-70 336-374 (442)
50 PRK09177 xanthine-guanine phos 98.6 2.5E-07 5.5E-12 62.6 6.8 49 18-74 71-119 (156)
51 COG0462 PrsA Phosphoribosylpyr 98.6 9.1E-08 2E-12 71.8 4.9 39 29-70 212-250 (314)
52 COG0634 Hpt Hypoxanthine-guani 98.6 1.5E-07 3.2E-12 65.9 5.7 44 29-75 91-134 (178)
53 PRK01259 ribose-phosphate pyro 98.6 4.3E-07 9.3E-12 67.3 8.3 39 29-70 206-244 (309)
54 PRK05793 amidophosphoribosyltr 98.6 1E-07 2.2E-12 74.2 5.1 38 29-69 351-388 (469)
55 PRK06781 amidophosphoribosyltr 98.5 1.1E-07 2.4E-12 74.2 5.1 39 28-69 345-383 (471)
56 PRK03092 ribose-phosphate pyro 98.5 1.3E-07 2.9E-12 70.0 5.1 38 29-69 199-236 (304)
57 PRK06388 amidophosphoribosyltr 98.5 1.5E-07 3.3E-12 73.5 5.3 38 28-68 353-390 (474)
58 PRK08341 amidophosphoribosyltr 98.5 1.6E-07 3.4E-12 72.9 5.1 38 29-69 332-369 (442)
59 PRK07349 amidophosphoribosyltr 98.5 1.9E-07 4.1E-12 73.5 5.5 38 28-68 374-411 (500)
60 PLN02541 uracil phosphoribosyl 98.5 2.7E-07 5.8E-12 67.0 5.7 43 27-72 153-197 (244)
61 PLN02369 ribose-phosphate pyro 98.5 2.1E-07 4.6E-12 68.8 5.1 38 29-69 200-237 (302)
62 PRK07631 amidophosphoribosyltr 98.5 2.1E-07 4.6E-12 72.8 5.2 39 28-69 345-383 (475)
63 PTZ00145 phosphoribosylpyropho 98.5 2.3E-07 4.9E-12 72.2 5.1 38 29-69 333-370 (439)
64 PRK06827 phosphoribosylpyropho 98.5 2.9E-07 6.3E-12 70.4 5.4 42 28-72 261-302 (382)
65 PRK02812 ribose-phosphate pyro 98.4 3.2E-07 6.9E-12 68.8 5.1 38 29-69 228-265 (330)
66 TIGR01251 ribP_PPkin ribose-ph 98.4 6.3E-07 1.4E-11 66.2 5.4 41 28-71 207-247 (308)
67 PF14572 Pribosyl_synth: Phosp 98.4 6.4E-07 1.4E-11 62.9 4.7 38 29-69 81-118 (184)
68 PRK09123 amidophosphoribosyltr 98.4 6.9E-07 1.5E-11 69.8 5.3 38 29-69 358-395 (479)
69 PRK07847 amidophosphoribosyltr 98.3 9.7E-07 2.1E-11 69.6 5.5 37 29-68 365-401 (510)
70 COG2065 PyrR Pyrimidine operon 98.2 1.9E-06 4.1E-11 60.2 4.9 43 29-74 94-137 (179)
71 KOG3367 Hypoxanthine-guanine p 98.0 1.1E-05 2.3E-10 57.3 4.8 43 29-74 123-165 (216)
72 COG2236 Predicted phosphoribos 97.9 7.6E-06 1.7E-10 57.8 2.2 29 29-57 85-113 (192)
73 PF14681 UPRTase: Uracil phosp 97.8 0.0002 4.4E-09 50.2 8.4 39 30-71 120-160 (207)
74 COG1926 Predicted phosphoribos 97.7 6.3E-05 1.4E-09 54.2 4.8 38 29-69 122-159 (220)
75 COG0035 Upp Uracil phosphoribo 97.7 6.1E-05 1.3E-09 54.0 4.7 45 28-74 121-165 (210)
76 PF15609 PRTase_2: Phosphoribo 97.6 0.00018 3.9E-09 51.0 5.5 45 27-73 117-161 (191)
77 KOG1448 Ribose-phosphate pyrop 97.3 0.00035 7.6E-09 52.7 4.4 38 29-69 212-249 (316)
78 COG0034 PurF Glutamine phospho 97.0 0.00097 2.1E-08 52.6 4.1 38 28-68 345-382 (470)
79 KOG0572 Glutamine phosphoribos 96.7 0.0023 5E-08 50.1 3.8 38 28-68 353-390 (474)
80 KOG1017 Predicted uracil phosp 93.5 0.25 5.5E-06 36.2 5.6 31 30-63 188-218 (267)
81 PF15610 PRTase_3: PRTase ComF 91.7 0.19 4.2E-06 37.5 3.1 41 20-64 128-168 (274)
82 KOG1503 Phosphoribosylpyrophos 89.6 0.66 1.4E-05 35.0 4.3 37 30-69 246-282 (354)
83 PF01555 N6_N4_Mtase: DNA meth 73.9 2.9 6.2E-05 27.7 2.2 26 31-56 190-215 (231)
84 PF07931 CPT: Chloramphenicol 60.6 17 0.00036 25.0 3.8 35 32-69 83-118 (174)
85 PRK11524 putative methyltransf 60.3 7.6 0.00016 28.1 2.2 27 31-57 207-233 (284)
86 smart00450 RHOD Rhodanese Homo 57.2 29 0.00064 19.4 4.0 31 28-64 53-83 (100)
87 COG0784 CheY FOG: CheY-like re 57.1 38 0.00082 20.1 4.7 25 30-57 4-28 (130)
88 PF11382 DUF3186: Protein of u 52.7 50 0.0011 24.5 5.5 42 28-72 80-121 (308)
89 KOG4203 Armadillo/beta-Catenin 52.2 15 0.00032 29.2 2.7 24 34-57 389-412 (473)
90 PRK06824 translation initiatio 51.1 69 0.0015 21.1 6.2 38 29-66 52-89 (118)
91 PF02875 Mur_ligase_C: Mur lig 50.1 27 0.00059 20.6 3.2 38 31-69 11-48 (91)
92 cd00158 RHOD Rhodanese Homolog 49.0 46 0.001 18.4 4.3 32 28-65 47-78 (89)
93 KOG1377 Uridine 5'- monophosph 48.4 15 0.00031 27.5 2.0 43 29-76 152-194 (261)
94 cd01444 GlpE_ST GlpE sulfurtra 46.7 42 0.00091 19.3 3.6 31 28-64 53-83 (96)
95 cd01529 4RHOD_Repeats Member o 44.6 57 0.0012 19.1 4.0 29 29-63 54-82 (96)
96 PRK13699 putative methylase; P 44.5 19 0.00042 25.4 2.1 23 35-57 166-188 (227)
97 PF00910 RNA_helicase: RNA hel 43.7 31 0.00067 21.1 2.8 28 30-57 48-80 (107)
98 PF03681 UPF0150: Uncharacteri 39.3 10 0.00023 20.2 0.1 19 39-57 23-41 (48)
99 PRK13584 hisG ATP phosphoribos 38.6 15 0.00032 26.3 0.8 13 37-49 148-160 (204)
100 TIGR00432 arcsn_tRNA_tgt tRNA- 38.3 20 0.00044 29.0 1.6 33 26-58 495-530 (540)
101 PRK01686 hisG ATP phosphoribos 37.4 17 0.00037 26.1 0.9 13 37-49 158-170 (215)
102 cd01523 RHOD_Lact_B Member of 36.7 87 0.0019 18.3 4.0 30 28-63 58-87 (100)
103 PF01634 HisG: ATP phosphoribo 36.3 17 0.00037 24.9 0.8 13 37-49 110-122 (163)
104 PRK13583 hisG ATP phosphoribos 35.1 18 0.00039 26.2 0.8 13 37-49 175-187 (228)
105 cd01481 vWA_collagen_alpha3-VI 34.7 25 0.00054 23.3 1.4 33 34-70 110-142 (165)
106 PF03192 DUF257: Pyrococcus pr 32.4 14 0.0003 26.2 -0.1 52 2-54 8-61 (210)
107 COG0040 HisG ATP phosphoribosy 32.0 21 0.00046 26.9 0.7 14 36-49 158-171 (290)
108 TIGR00070 hisG ATP phosphoribo 31.6 24 0.00053 24.6 1.0 14 36-49 151-164 (182)
109 PF00595 PDZ: PDZ domain (Also 31.4 74 0.0016 18.0 2.9 30 28-57 43-72 (81)
110 PRK09019 translation initiatio 31.3 1.5E+02 0.0032 19.2 7.2 50 18-67 30-80 (108)
111 PRK00939 translation initiatio 31.2 1.4E+02 0.003 18.8 6.0 48 19-66 24-71 (99)
112 COG0588 GpmA Phosphoglycerate 30.8 52 0.0011 24.2 2.6 27 27-57 170-196 (230)
113 PF15432 Sec-ASP3: Accessory S 30.7 68 0.0015 21.2 2.9 14 1-14 22-35 (128)
114 PF04189 Gcd10p: Gcd10p family 29.1 1E+02 0.0022 23.1 3.9 26 27-54 198-223 (299)
115 cd01518 RHOD_YceA Member of th 28.9 1.3E+02 0.0028 17.7 4.1 29 29-63 59-87 (101)
116 smart00155 PLDc Phospholipase 28.5 23 0.0005 16.9 0.3 15 31-45 6-21 (28)
117 PRK04333 50S ribosomal protein 28.0 1.5E+02 0.0033 18.2 4.2 39 2-44 4-42 (84)
118 cd01644 RT_pepA17 RT_pepA17: R 28.0 30 0.00065 24.2 0.9 23 33-55 137-159 (213)
119 KOG0519 Sensory transduction h 27.9 93 0.002 26.2 3.9 36 26-67 661-696 (786)
120 PF00614 PLDc: Phospholipase D 27.3 36 0.00078 16.8 0.9 11 31-41 6-16 (28)
121 PRK02122 glucosamine-6-phospha 26.8 1.1E+02 0.0024 25.3 4.1 26 26-51 364-394 (652)
122 PF12646 DUF3783: Domain of un 26.5 1.3E+02 0.0028 16.9 3.9 33 33-70 2-34 (58)
123 TIGR01809 Shik-DH-AROM shikima 25.7 1.7E+02 0.0036 21.2 4.5 30 30-66 124-153 (282)
124 cd06437 CESA_CaSu_A2 Cellulose 25.7 75 0.0016 21.2 2.6 23 33-57 34-56 (232)
125 TIGR01158 SUI1_rel translation 25.4 1.8E+02 0.0039 18.3 6.0 49 18-66 23-72 (101)
126 TIGR02825 B4_12hDH leukotriene 25.4 2.1E+02 0.0046 20.2 4.9 35 27-67 135-169 (325)
127 cd00001 PTS_IIB_man PTS_IIB, P 25.3 1.3E+02 0.0029 20.0 3.7 47 9-57 5-51 (151)
128 PRK10618 phosphotransfer inter 24.5 2.1E+02 0.0047 24.4 5.5 33 29-67 687-719 (894)
129 PF14382 ECR1_N: Exosome compl 24.2 26 0.00057 18.6 0.0 11 1-11 1-11 (39)
130 PRK06620 hypothetical protein; 24.1 1.8E+02 0.0039 20.1 4.3 32 31-65 85-117 (214)
131 cd01076 NAD_bind_1_Glu_DH NAD( 23.7 2.7E+02 0.0058 19.6 5.2 42 29-77 29-74 (227)
132 PRK07451 translation initiatio 23.7 2.2E+02 0.0048 18.6 6.1 38 30-67 50-87 (115)
133 TIGR00854 pts-sorbose PTS syst 23.7 1.5E+02 0.0033 19.8 3.7 32 30-64 25-56 (151)
134 cd08295 double_bond_reductase_ 23.4 2.4E+02 0.0053 20.0 5.0 35 27-67 148-182 (338)
135 cd01520 RHOD_YbbB Member of th 22.9 2E+02 0.0043 17.9 4.2 32 27-63 82-113 (128)
136 cd05286 QOR2 Quinone oxidoredu 22.5 2.5E+02 0.0054 18.8 4.9 33 28-66 134-166 (320)
137 cd08290 ETR 2-enoyl thioester 22.4 2.4E+02 0.0052 19.8 4.7 34 28-67 144-177 (341)
138 TIGR02824 quinone_pig3 putativ 22.4 2.6E+02 0.0056 19.0 4.9 33 28-66 137-169 (325)
139 PLN02245 ATP phosphoribosyl tr 22.4 44 0.00095 26.3 1.0 13 37-49 240-252 (403)
140 TIGR03711 acc_sec_asp3 accesso 22.2 1E+02 0.0022 20.8 2.6 13 2-14 34-46 (135)
141 cd08239 THR_DH_like L-threonin 22.1 2.2E+02 0.0048 20.1 4.5 32 28-66 161-193 (339)
142 PF01488 Shikimate_DH: Shikima 22.0 1.3E+02 0.0029 19.1 3.1 31 29-66 10-40 (135)
143 cd08243 quinone_oxidoreductase 21.9 2.7E+02 0.0058 19.0 4.9 33 28-66 140-172 (320)
144 cd01477 vWA_F09G8-8_type VWA F 21.9 1.9E+02 0.0042 19.8 4.0 34 32-68 132-168 (193)
145 PRK15029 arginine decarboxylas 21.2 2E+02 0.0042 24.5 4.6 32 33-67 2-38 (755)
146 cd01576 AcnB_Swivel Aconitase 21.2 1.7E+02 0.0037 19.5 3.5 29 27-55 46-74 (131)
147 cd08294 leukotriene_B4_DH_like 20.6 3E+02 0.0065 19.1 4.9 34 28-67 141-174 (329)
148 cd08233 butanediol_DH_like (2R 20.5 2.9E+02 0.0063 19.7 4.9 32 28-66 170-202 (351)
149 cd08242 MDR_like Medium chain 20.4 3E+02 0.0066 19.1 4.9 32 28-66 153-184 (319)
150 PRK00439 leuD 3-isopropylmalat 20.4 61 0.0013 22.1 1.3 34 30-66 47-80 (163)
151 PRK10773 murF UDP-N-acetylmura 20.4 2.3E+02 0.005 21.7 4.5 26 32-57 325-351 (453)
152 TIGR02822 adh_fam_2 zinc-bindi 20.2 2.8E+02 0.0062 19.9 4.8 32 28-66 163-194 (329)
153 PRK11425 PTS system N-acetylga 20.1 1.9E+02 0.0041 19.5 3.6 28 30-57 27-54 (157)
154 TIGR01143 murF UDP-N-acetylmur 20.1 1.9E+02 0.0041 21.8 4.0 27 31-57 295-322 (417)
No 1
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=99.84 E-value=5.7e-21 Score=132.33 Aligned_cols=72 Identities=47% Similarity=0.736 Sum_probs=70.5
Q ss_pred CCceeeeeeeeccccceeEEEEccccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecCCCC
Q 034952 3 PLGEIISEEYSLEYGKDVMEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLLEFS 77 (78)
Q Consensus 3 ~pg~~i~~~y~~~~g~~~~~~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~~~~ 77 (78)
+||++++++|.+|||.+.+||+.+++.+|+||+||||+++||+|+.+|.+++.+. |++++.|.|+++.++|+
T Consensus 94 LPG~~i~~~Y~lEYg~d~~Emq~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~---ga~vvE~~~vieL~~Lk 165 (183)
T KOG1712|consen 94 LPGEVISESYELEYGEDRFEMQKGAIKPGQRVVVVDDLLATGGTLAAATELLERV---GAEVVECACVIELPELK 165 (183)
T ss_pred CCCceeEEEEeeecCccceeeeccccCCCCeEEEEechhhcCccHHHHHHHHHHh---ccEEEEEEEEEEccccC
Confidence 6999999999999999999999999999999999999999999999999999999 99999999999999885
No 2
>PLN02293 adenine phosphoribosyltransferase
Probab=99.64 E-value=2e-15 Score=105.02 Aligned_cols=71 Identities=58% Similarity=0.866 Sum_probs=65.4
Q ss_pred CCceeeeeeeeccccceeEEEEccccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecCCC
Q 034952 3 PLGEIISEEYSLEYGKDVMEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLLEF 76 (78)
Q Consensus 3 ~pg~~i~~~y~~~~g~~~~~~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~~~ 76 (78)
.|++.++..|..+||++.++++.+.+.+|+||+||||++|||+|+.+++++++++ |+++++++++++..++
T Consensus 97 ~~~~~~~~~~~~~~g~~~l~l~~~~i~~G~rVlIVDDvitTG~T~~~~~~~l~~~---Ga~~v~~~~~~~~~~~ 167 (187)
T PLN02293 97 LPGEVISEEYVLEYGTDCLEMHVGAVEPGERALVIDDLIATGGTLCAAINLLERA---GAEVVECACVIELPEL 167 (187)
T ss_pred CCCceEEEEEeccCCceEEEEEcCccCCCCEEEEEeccccchHHHHHHHHHHHHC---CCEEEEEEEEEEcCCc
Confidence 4788888899999999888888777889999999999999999999999999999 9999999999997764
No 3
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=99.62 E-value=3.1e-15 Score=103.31 Aligned_cols=72 Identities=40% Similarity=0.580 Sum_probs=66.6
Q ss_pred CCceeeeeeeeccccceeEEEEccccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecCCCC
Q 034952 3 PLGEIISEEYSLEYGKDVMEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLLEFS 77 (78)
Q Consensus 3 ~pg~~i~~~y~~~~g~~~~~~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~~~~ 77 (78)
+|.......|..+|+.+.++++.+.+.+|+||+||||+++||+|+.++.++++++ |++++++.+++++.+++
T Consensus 88 l~~~~~~~~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~---ga~vvg~~~~ie~~~~~ 159 (179)
T COG0503 88 LPEESVVETYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGTALALIELLEQA---GAEVVGAAFVIELGELD 159 (179)
T ss_pred CCCcceeEEEEEeccceEEEEEhhhCCCCCEEEEEecchhcChHHHHHHHHHHHC---CCEEEEEEEEEEcCccc
Confidence 3566777889999998889999999999999999999999999999999999999 99999999999998874
No 4
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=99.58 E-value=1.6e-14 Score=100.86 Aligned_cols=64 Identities=11% Similarity=0.137 Sum_probs=55.9
Q ss_pred eeeeeccccceeEEEEccccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecCCC
Q 034952 9 SEEYSLEYGKDVMEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLLEF 76 (78)
Q Consensus 9 ~~~y~~~~g~~~~~~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~~~ 76 (78)
...|.+ |+...++++...+.+|+|||||||++|||+|+.+++++++++ |++++++++++|+.+.
T Consensus 96 ~~s~~~-~~~~~l~i~~~~l~~G~rVLIVDDvvtTGgT~~a~~~ll~~a---Ga~Vvgv~~lvd~~~~ 159 (191)
T TIGR01744 96 VHSFTK-QTTSTVAVSGEFLSDQDRVLIIDDFLANGQAAHGLVDIAKQA---GAKIAGIGIVIEKSFQ 159 (191)
T ss_pred EEEeec-CccEEEEEEHHhCCCcCEEEEEEehhccChHHHHHHHHHHHC---CCEEEEEEEEEEecCc
Confidence 344555 566678888777889999999999999999999999999999 9999999999998754
No 5
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=99.55 E-value=3.4e-14 Score=96.76 Aligned_cols=68 Identities=50% Similarity=0.743 Sum_probs=58.9
Q ss_pred ceeeeeeeeccccceeEEEEccccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecCC
Q 034952 5 GEIISEEYSLEYGKDVMEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLLE 75 (78)
Q Consensus 5 g~~i~~~y~~~~g~~~~~~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~~ 75 (78)
+...+..|..+|+++.+++....+.+|++||||||++|||+|+.++++.|+++ |++++++++++|+.+
T Consensus 88 ~~~~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG~Tl~~~~~~l~~~---Ga~~v~v~vl~~~~~ 155 (175)
T PRK02304 88 RETISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATGGTLEAAIKLLERL---GAEVVGAAFVIELPD 155 (175)
T ss_pred CceEeEEEecccCceEEEEchhhcCCCCEEEEEeCCccccHHHHHHHHHHHHc---CCEEEEEEEEEEccc
Confidence 44556667777777778776666678999999999999999999999999999 999999999999875
No 6
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=99.54 E-value=3.7e-14 Score=103.85 Aligned_cols=71 Identities=24% Similarity=0.388 Sum_probs=63.8
Q ss_pred CCCceeeeeeeeccccce--eEEEEccccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecCC
Q 034952 2 VPLGEIISEEYSLEYGKD--VMEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLLE 75 (78)
Q Consensus 2 ~~pg~~i~~~y~~~~g~~--~~~~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~~ 75 (78)
++||+.++.+|..++.+. .+++++..+.+|+|||||||+++||+|+.+++++++++ |++++++++++|+.+
T Consensus 163 ~t~g~~vs~nY~sgs~~~ie~m~l~k~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~---Ga~VvGv~vlve~~~ 235 (268)
T TIGR01743 163 VTEGSTVSINYVSGSSNRIQTMSLAKRSLKTGSKVLIIDDFMKAGGTINGMINLLDEF---DAEVAGIGVLIDNEG 235 (268)
T ss_pred CCCCCcEEEEEEcccCccceEEEEehhhCCCcCEEEEEeeecccCHHHHHHHHHHHHC---CCEEEEEEEEEECCC
Confidence 368999999998866543 58888888899999999999999999999999999999 999999999999863
No 7
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=99.54 E-value=5.1e-14 Score=95.56 Aligned_cols=69 Identities=43% Similarity=0.646 Sum_probs=59.2
Q ss_pred CceeeeeeeeccccceeEEEEccccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecCC
Q 034952 4 LGEIISEEYSLEYGKDVMEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLLE 75 (78)
Q Consensus 4 pg~~i~~~y~~~~g~~~~~~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~~ 75 (78)
+++..+..|..+++++.+++......+|++||||||++|||+|+.++.+.|+++ |++++++++++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDIitTG~Tl~~a~~~L~~~---Ga~~v~~~~l~~~~~ 150 (169)
T TIGR01090 82 PGETISASYDLEYGKDQLEIHKDAIKPGQRVLIVDDLLATGGTAEATDELIRKL---GGEVVEAAFLIELKD 150 (169)
T ss_pred CCceeeeEEeeccCceEEEEehhhcCCcCEEEEEeccccchHHHHHHHHHHHHc---CCEEEEEEEEEEccc
Confidence 455666677777887777776555679999999999999999999999999999 999999999999864
No 8
>PRK09213 pur operon repressor; Provisional
Probab=99.54 E-value=3.6e-14 Score=104.02 Aligned_cols=71 Identities=31% Similarity=0.446 Sum_probs=63.5
Q ss_pred CCCceeeeeeeeccccc--eeEEEEccccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecCC
Q 034952 2 VPLGEIISEEYSLEYGK--DVMEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLLE 75 (78)
Q Consensus 2 ~~pg~~i~~~y~~~~g~--~~~~~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~~ 75 (78)
++||++++.+|...... ..++++...+.+|+|||||||+++||+|+.+++++++++ |++++++++++|+.+
T Consensus 165 ~~~G~~vs~~y~sgs~~~ie~m~L~~~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~---Ga~VvGv~vlVd~~~ 237 (271)
T PRK09213 165 VTEGSTVSINYVSGSSKRIETMSLSKRSLKEGSRVLIVDDFMKAGGTINGMISLLKEF---DAEVVGIGVLVETKE 237 (271)
T ss_pred CCCCCcEEEEEEecccccceEEEEeHhhcCCcCEEEEEeeecccCHhHHHHHHHHHHC---CCEEEEEEEEEECCC
Confidence 46899999999875543 358899888999999999999999999999999999999 999999999999853
No 9
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=99.53 E-value=5.9e-14 Score=97.91 Aligned_cols=57 Identities=16% Similarity=0.221 Sum_probs=52.2
Q ss_pred cceeEEEEccccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecCCC
Q 034952 17 GKDVMEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLLEF 76 (78)
Q Consensus 17 g~~~~~~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~~~ 76 (78)
+.+.++++.+.+.+|+||+||||++|||+|+.+++++++++ |++++++++++|+.+.
T Consensus 103 ~~~~l~i~~~~i~~G~rVlIVDDviaTGgT~~a~~~lv~~a---Ga~vvgv~~lvd~~~~ 159 (189)
T PRK09219 103 VTSTVSVSKKFLSEGDRVLIIDDFLANGQAALGLIDIIEQA---GAKVAGIGIVIEKSFQ 159 (189)
T ss_pred ceEEEEEEhhhCCCCCEEEEEeehhhcChHHHHHHHHHHHC---CCEEEEEEEEEEccCc
Confidence 44578888888899999999999999999999999999999 9999999999998643
No 10
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=99.50 E-value=1.2e-13 Score=95.85 Aligned_cols=60 Identities=23% Similarity=0.378 Sum_probs=51.3
Q ss_pred ccccceeEE--EEccccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecCCC
Q 034952 14 LEYGKDVME--MHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLLEF 76 (78)
Q Consensus 14 ~~~g~~~~~--~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~~~ 76 (78)
++|++..++ +....+.+|+||+||||++|||+|+.+++++++++ |+++++++|++|+.++
T Consensus 95 ~~~~~~~~eg~~~~~~~~~G~rVlIVDDvitTG~T~~~ai~ll~~a---Ga~vv~v~~vvd~~~~ 156 (187)
T PRK12560 95 VEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTGGTVIALIKAIENS---GGIVSDVICVIEKTQN 156 (187)
T ss_pred eeeeccceeeeeEccCCCCcCEEEEEEeccccCHHHHHHHHHHHHC---CCEEEEEEEEEEeccc
Confidence 456655444 44456779999999999999999999999999999 9999999999998764
No 11
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=99.46 E-value=3e-13 Score=94.25 Aligned_cols=64 Identities=19% Similarity=0.302 Sum_probs=55.4
Q ss_pred eeeeeeeccccceeEEEEccccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecCC
Q 034952 7 IISEEYSLEYGKDVMEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLLE 75 (78)
Q Consensus 7 ~i~~~y~~~~g~~~~~~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~~ 75 (78)
++.++..++||.+.+. .+.+.+|+||+||||++|||+|+.+++++++++ |++++++++++|+.+
T Consensus 100 v~vRK~~k~~g~~~~~--~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~---Ga~V~~v~vlvdr~~ 163 (187)
T PRK13810 100 LIVRKSVKDYGTGSRF--VGDLKPEDRIVMLEDVTTSGGSVREAIEVVREA---GAYIKYVITVVDREE 163 (187)
T ss_pred EEEecCCCccCCCceE--EccCCCcCEEEEEEeccCCChHHHHHHHHHHHC---CCEEEEEEEEEECCc
Confidence 4555667899887653 356779999999999999999999999999999 999999999999864
No 12
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=99.40 E-value=1.2e-12 Score=90.31 Aligned_cols=63 Identities=21% Similarity=0.304 Sum_probs=53.4
Q ss_pred eeeeeeeccccceeEEEEccccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecC
Q 034952 7 IISEEYSLEYGKDVMEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLL 74 (78)
Q Consensus 7 ~i~~~y~~~~g~~~~~~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~ 74 (78)
.+.++..++||..... .+.+.+|++|+||||++|||+|+.+++++++++ |++++++++++|+.
T Consensus 85 ~~~rk~~k~yg~~~~~--~g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~---Ga~vv~~~vlvdr~ 147 (176)
T PRK13812 85 VIARKQAKEYGTGNRI--EGRLDEGEEVVVLEDIATTGQSAVDAVEALREA---GATVNRVLVVVDRE 147 (176)
T ss_pred EEEeccCCcCCCCCeE--EecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHC---CCeEEEEEEEEECC
Confidence 4455556788876531 245679999999999999999999999999999 99999999999986
No 13
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.40 E-value=1.1e-12 Score=92.85 Aligned_cols=63 Identities=19% Similarity=0.278 Sum_probs=55.9
Q ss_pred eeeeeeeecccccee-EEEEccccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecC
Q 034952 6 EIISEEYSLEYGKDV-MEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLL 74 (78)
Q Consensus 6 ~~i~~~y~~~~g~~~-~~~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~ 74 (78)
.++.++..++||+.. ++. ...+|+||+||||++|||+++.+++++|+++ |+.+.++++++|+.
T Consensus 89 ~~~~Rke~K~hG~~~~ieG---~~~~G~kVvvVEDViTTG~Si~eai~~l~~~---G~~V~gv~~ivDR~ 152 (201)
T COG0461 89 MAYVRKEAKDHGTGGLIEG---GEVKGEKVVVVEDVITTGGSILEAVEALREA---GAEVVGVAVIVDRQ 152 (201)
T ss_pred EEEEeceeccCCCcceeEe---cCCCCCEEEEEEecccCCHhHHHHHHHHHHc---CCeEEEEEEEEecc
Confidence 677888899999953 443 3449999999999999999999999999999 99999999999985
No 14
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=99.36 E-value=3.7e-12 Score=87.13 Aligned_cols=61 Identities=21% Similarity=0.280 Sum_probs=50.9
Q ss_pred eeeeeeccccceeEEEEccccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecC
Q 034952 8 ISEEYSLEYGKDVMEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLL 74 (78)
Q Consensus 8 i~~~y~~~~g~~~~~~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~ 74 (78)
+.++..++||...+.. .. .+|+||+||||++|||+|+.+++++|+++ |++++++++++|+.
T Consensus 84 ~~rK~~k~~g~~~~~~--g~-~~g~~VlIVDDvi~TG~T~~~~~~~l~~~---Ga~v~~~~~~vdr~ 144 (170)
T PRK13811 84 IIRKEAKDHGKAGLII--GD-VKGKRVLLVEDVTTSGGSALYGIEQLRAA---GAVVDDVVTVVDRE 144 (170)
T ss_pred EEecCCCCCCCcceEE--cc-cCCCEEEEEEecccccHHHHHHHHHHHHC---CCeEEEEEEEEECC
Confidence 3344556777665433 22 48999999999999999999999999999 99999999999986
No 15
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=99.35 E-value=4.6e-12 Score=89.49 Aligned_cols=63 Identities=10% Similarity=0.172 Sum_probs=52.1
Q ss_pred eeeeeecccccee-EEEEccccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecC
Q 034952 8 ISEEYSLEYGKDV-MEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLL 74 (78)
Q Consensus 8 i~~~y~~~~g~~~-~~~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~ 74 (78)
+.++..+.+|+.. +++ .+.+.+|++|+||||++|||+|+.+++++|++. |+++++++|++|+.
T Consensus 95 ~~RK~~K~~G~~~~~~~-~g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~---G~~vv~v~vlvdr~ 158 (206)
T PRK13809 95 LRRKELKNVDPSDAIKV-EGLFTPGQTCLVINDMVSSGKSIIETAVALEEE---GLVVREALVFLDRQ 158 (206)
T ss_pred EEeCCCCCCCCcCEEEE-ccccCCCCEEEEEEeccccCHHHHHHHHHHHHC---CCEEEEEEEEEECc
Confidence 3444556677653 554 345679999999999999999999999999999 99999999999964
No 16
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=99.34 E-value=6.4e-12 Score=90.25 Aligned_cols=53 Identities=25% Similarity=0.344 Sum_probs=48.8
Q ss_pred eEEEEccccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecCC
Q 034952 20 VMEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLLE 75 (78)
Q Consensus 20 ~~~~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~~ 75 (78)
.++++...+.+|+|||||||+++||+|+.+++++++++ |+++++++++++..+
T Consensus 165 ~~~l~~~~l~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~---ga~vvgv~vlv~~~~ 217 (238)
T PRK08558 165 TLYLPASALKKGDRVLIVDDIIRSGETQRALLDLARQA---GADVVGVFFLIAVGE 217 (238)
T ss_pred EEEecHHHcCCcCEEEEEecccccCHHHHHHHHHHHHc---CCEEEEEEEEEecCc
Confidence 46777677889999999999999999999999999999 999999999999764
No 17
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=99.33 E-value=5.7e-12 Score=86.00 Aligned_cols=61 Identities=15% Similarity=0.228 Sum_probs=51.0
Q ss_pred eeeeccccceeEEEEccccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecCC
Q 034952 10 EEYSLEYGKDVMEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLLE 75 (78)
Q Consensus 10 ~~y~~~~g~~~~~~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~~ 75 (78)
++..++||...+. .+.+.+|++|+||||+++||+|+.+++++|+++ |+++++++|++|+.+
T Consensus 89 rk~~k~~g~~~~~--~g~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~---Ga~v~~~~vlvdr~~ 149 (173)
T TIGR00336 89 RKEAKDHGEGGNI--EGELLEGDKVVVVEDVITTGTSILEAVEIIQAA---GGQVAGVIIAVDRQE 149 (173)
T ss_pred cCCcccCCCCCce--ecCCCCCCEEEEEeccccChHHHHHHHHHHHHc---CCeEEEEEEEEecCc
Confidence 3344566665432 245678999999999999999999999999999 999999999999875
No 18
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=99.30 E-value=9.1e-12 Score=97.15 Aligned_cols=64 Identities=16% Similarity=0.227 Sum_probs=55.8
Q ss_pred eeeeeeeccccceeEEEEccccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecCC
Q 034952 7 IISEEYSLEYGKDVMEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLLE 75 (78)
Q Consensus 7 ~i~~~y~~~~g~~~~~~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~~ 75 (78)
++.++..++||+..+ .++.+.+|+||+|||||+|||+|+.+++++|+++ |++++++++++|+.+
T Consensus 371 v~vRKe~K~~G~~~~--ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~a---G~~V~~v~vlVDR~~ 434 (477)
T PRK05500 371 IFPRKEVKAHGTRRL--IEGNFHPGETVVVVDDILITGKSVMEGAEKLKSA---GLNVRDIVVFIDHEQ 434 (477)
T ss_pred EEEecCcCccCCCce--EecCCCCcCEEEEEEeccccCHHHHHHHHHHHHC---CCEEEEEEEEEECCc
Confidence 455566788998764 3457789999999999999999999999999999 999999999999864
No 19
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=99.28 E-value=2.5e-11 Score=76.64 Aligned_cols=47 Identities=36% Similarity=0.399 Sum_probs=41.8
Q ss_pred EEEccccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEE
Q 034952 22 EMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMV 71 (78)
Q Consensus 22 ~~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v 71 (78)
........+|++||||||+++||+|+.++++.|+++ |++++.+++++
T Consensus 79 ~~~~~~~~~gk~vliVDDvi~tG~Tl~~~~~~L~~~---g~~~v~~~vl~ 125 (125)
T PF00156_consen 79 FIIDKEDIKGKRVLIVDDVIDTGGTLKEAIELLKEA---GAKVVGVAVLV 125 (125)
T ss_dssp EEEESSSGTTSEEEEEEEEESSSHHHHHHHHHHHHT---TBSEEEEEEEE
T ss_pred eecccccccceeEEEEeeeEcccHHHHHHHHHHHhC---CCcEEEEEEEC
Confidence 334455678999999999999999999999999999 99999999875
No 20
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=99.23 E-value=1.1e-10 Score=80.23 Aligned_cols=44 Identities=36% Similarity=0.397 Sum_probs=41.1
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecCC
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLLE 75 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~~ 75 (78)
.+|++|+||||+++||+|+.+++++|+++ |+++++++++++..+
T Consensus 118 ~~gk~VLIVDDiitTG~Tl~aa~~~L~~~---GA~~V~~~~v~~~~~ 161 (178)
T PRK07322 118 LKGKRVAIVDDVVSTGGTLTALERLVERA---GGQVVAKAAIFAEGD 161 (178)
T ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHc---CCEEEEEEEEEEcCC
Confidence 47999999999999999999999999999 999999999988754
No 21
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=99.19 E-value=4.5e-11 Score=82.28 Aligned_cols=48 Identities=25% Similarity=0.348 Sum_probs=40.7
Q ss_pred eEEEEccccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEE
Q 034952 20 VMEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMV 71 (78)
Q Consensus 20 ~~~~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v 71 (78)
.|.+... ..+|++|||||||+|||+|+.++.+.|+++ |++.+.++++.
T Consensus 142 ~f~~~~~-~~~~~~vllvDDV~TTGaTl~~~~~~L~~~---Ga~~V~~~~la 189 (190)
T TIGR00201 142 AFDLKNN-SFQGRNIVLVDDVVTTGATLHEIARLLLEL---GAASVQVWTLA 189 (190)
T ss_pred cEEccCC-CCCCCEEEEEeeeeccHHHHHHHHHHHHHc---CCCEEEEEEEE
Confidence 4554332 347899999999999999999999999999 99999998874
No 22
>PRK06031 phosphoribosyltransferase; Provisional
Probab=99.19 E-value=9.4e-11 Score=84.24 Aligned_cols=45 Identities=24% Similarity=0.471 Sum_probs=42.0
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecCC
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLLE 75 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~~ 75 (78)
..+|+|||||||+++||+|+.+++++++++ |++++++.+++++.+
T Consensus 151 ~~~GkrVLIVDDVitTG~Tl~aa~~lL~~~---Ga~Vvgv~v~v~~g~ 195 (233)
T PRK06031 151 LLEGRRVALIDDVISSGASIVAGLRLLAAC---GIEPAGIGAAMLQSE 195 (233)
T ss_pred cCCCCEEEEEEeEccccHHHHHHHHHHHHc---CCeEEEEEEEEEccc
Confidence 358999999999999999999999999999 999999999998754
No 23
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=99.16 E-value=8.7e-11 Score=82.02 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=42.1
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecCC
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLLE 75 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~~ 75 (78)
.+|++|+||||++|||+|+.++++.|+++ |++++++++++|+..
T Consensus 138 ~~gk~VlIVDDVitTG~Tl~~ai~~l~~~---Ga~~v~v~vlvdk~g 181 (200)
T PRK02277 138 VEGKRCVIVDDVITSGTTMKETIEYLKEH---GGKPVAVVVLIDKSG 181 (200)
T ss_pred CCcCEEEEEeeccCchHHHHHHHHHHHHc---CCEEEEEEEEEECcc
Confidence 57999999999999999999999999999 999999999999865
No 24
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=99.14 E-value=1.3e-10 Score=80.65 Aligned_cols=45 Identities=31% Similarity=0.412 Sum_probs=42.5
Q ss_pred ccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecC
Q 034952 27 AVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLL 74 (78)
Q Consensus 27 ~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~ 74 (78)
.+.+|++||||||+++||+|+.++.+.++++ |++++++++++++.
T Consensus 101 ~l~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~---Ga~vv~~~vlid~~ 145 (187)
T TIGR01367 101 AVKPGEKFVAVEDVVTTGGSLLEAIRAIEGQ---GGQVVGLACIIDRS 145 (187)
T ss_pred cCCCCCEEEEEEeeecchHHHHHHHHHHHHc---CCeEEEEEEEEECc
Confidence 3468999999999999999999999999999 99999999999987
No 25
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=99.13 E-value=3.2e-10 Score=78.79 Aligned_cols=56 Identities=21% Similarity=0.334 Sum_probs=46.7
Q ss_pred ecccccee-EEEEccccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecC
Q 034952 13 SLEYGKDV-MEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLL 74 (78)
Q Consensus 13 ~~~~g~~~-~~~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~ 74 (78)
.+.||... ++ ....+|++|+||||+++||+|+.++++++++. |++++++++++|+.
T Consensus 97 ~~~~g~~~~~~---~~~~~g~~VliVDDvi~tG~Tl~~~~~~l~~~---Ga~~v~~~vlv~~~ 153 (202)
T PRK00455 97 AKDHGEGGQIE---GRRLFGKRVLVVEDVITTGGSVLEAVEAIRAA---GAEVVGVAVIVDRQ 153 (202)
T ss_pred cCCCCCCceEE---ccCCCCCEEEEEecccCCcHHHHHHHHHHHHc---CCEEEEEEEEEECc
Confidence 34565442 33 23457999999999999999999999999999 99999999999984
No 26
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.11 E-value=5.6e-10 Score=76.84 Aligned_cols=45 Identities=22% Similarity=0.138 Sum_probs=41.9
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecCC
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLLE 75 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~~ 75 (78)
..+|++||||||+++||+|+.++.+.|+++ |++.+.++++.+++.
T Consensus 94 ~v~gk~VLIVDDIidTG~Tl~~~~~~Lk~~---Ga~~V~~avL~~k~~ 138 (181)
T PRK09162 94 SLKGRTVLVVDDILDEGHTLAAIRDRCLEM---GAAEVYSAVLVDKTH 138 (181)
T ss_pred CCCCCEEEEEccccCcHHHHHHHHHHHHhC---CCCEEEEEEEEEcCc
Confidence 458999999999999999999999999999 999999999998853
No 27
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=99.03 E-value=9.8e-10 Score=74.82 Aligned_cols=45 Identities=27% Similarity=0.217 Sum_probs=41.9
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecCC
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLLE 75 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~~ 75 (78)
..+|++||||||+++||+|+.++++.|++. |++.+.++++++++.
T Consensus 81 ~~~gk~vlivDDii~TG~Tl~~~~~~l~~~---g~~~i~~~~l~~k~~ 125 (166)
T TIGR01203 81 SIKGKDVLIVEDIVDTGLTLQYLLDLLKAR---KPKSLKIVTLLDKPS 125 (166)
T ss_pred CCCCCEEEEEeeeeCcHHHHHHHHHHHHHC---CCCEEEEEEEEecCc
Confidence 357999999999999999999999999999 999999999999854
No 28
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=99.00 E-value=1.5e-09 Score=75.53 Aligned_cols=45 Identities=24% Similarity=0.210 Sum_probs=42.6
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecCC
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLLE 75 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~~ 75 (78)
..+|++||||||+++||+|+.++++.|++. |++.+.++++++++.
T Consensus 94 ~v~gk~VliVDDIidTG~Tl~~~~~~l~~~---g~~~v~~avL~dK~~ 138 (189)
T PLN02238 94 DVKGKHVLLVEDIVDTGNTLSALVAHLEAK---GAASVSVCALLDKRA 138 (189)
T ss_pred CCCCCEEEEEecccchHHHHHHHHHHHHhC---CCCEEEEEEEEECCc
Confidence 358999999999999999999999999999 999999999999875
No 29
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=99.00 E-value=1.1e-09 Score=78.10 Aligned_cols=51 Identities=22% Similarity=0.232 Sum_probs=41.2
Q ss_pred eeEEEEccccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEec
Q 034952 19 DVMEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLL 73 (78)
Q Consensus 19 ~~~~~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~ 73 (78)
+.|.+.... ...++|+|||||+|||+|+.++.+.|++. |++.+.++++..-
T Consensus 173 ~aF~~~~~~-~~~~~vlLvDDV~TTGaTl~~~~~~L~~~---Ga~~v~~~~lar~ 223 (225)
T COG1040 173 GAFRLKKGI-EEPKNVLLVDDVYTTGATLKEAAKLLREA---GAKRVFVLTLARA 223 (225)
T ss_pred CCeecCCCC-CCCCeEEEEecccccHHHHHHHHHHHHHc---CCceEEEEEEEec
Confidence 345554322 22389999999999999999999999999 9999999888643
No 30
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=98.97 E-value=1e-09 Score=77.44 Aligned_cols=46 Identities=24% Similarity=0.224 Sum_probs=43.9
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecCCCC
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLLEFS 77 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~~~~ 77 (78)
-+|+|++||||++|||+|+.++++.|++. |++.+.+.+++|+.+++
T Consensus 139 V~gK~cvIVDDvittG~Ti~E~Ie~lke~---g~kpv~v~VL~dK~G~d 184 (203)
T COG0856 139 VEGKRCVIVDDVITTGSTIKETIEQLKEE---GGKPVLVVVLADKKGVD 184 (203)
T ss_pred ccCceEEEEecccccChhHHHHHHHHHHc---CCCcEEEEEEEccCCcc
Confidence 47999999999999999999999999999 99999999999999875
No 31
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=98.96 E-value=1.7e-09 Score=73.84 Aligned_cols=42 Identities=29% Similarity=0.320 Sum_probs=39.5
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCC-CeEEEEEEEEec
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFN-FHLERCQKMVLL 73 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g-~~~~~~~~~v~~ 73 (78)
.+|++||||||+++||+|+.++++.|++. | ++.+.+++++++
T Consensus 93 v~gr~VLIVDDIidTG~Tl~~~~~~L~~~---G~~~~v~~avL~~K 135 (176)
T PRK05205 93 IEGKRVILVDDVLYTGRTIRAALDALFDY---GRPARVQLAVLVDR 135 (176)
T ss_pred CCCCEEEEEecccCcHHHHHHHHHHHHhc---CCCcEEEEEEEEEC
Confidence 57999999999999999999999999999 9 688999999986
No 32
>PRK11595 DNA utilization protein GntX; Provisional
Probab=98.95 E-value=1.4e-09 Score=76.96 Aligned_cols=41 Identities=29% Similarity=0.281 Sum_probs=38.0
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEe
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVL 72 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~ 72 (78)
.+|++|||||||+|||.|+.++.+.|++. |++.+.++++..
T Consensus 185 ~~~~~vllvDDv~tTG~Tl~~~~~~L~~~---g~~~V~~~~la~ 225 (227)
T PRK11595 185 VQGQHMAIVDDVVTTGSTVAEIAQLLLRN---GAASVQVWCLCR 225 (227)
T ss_pred CCCCEEEEEeeeecchHHHHHHHHHHHHc---CCcEEEEEEEEe
Confidence 47899999999999999999999999999 999999988753
No 33
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=98.90 E-value=1.1e-08 Score=74.20 Aligned_cols=44 Identities=25% Similarity=0.324 Sum_probs=41.8
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecCC
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLLE 75 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~~ 75 (78)
.+|++||||||+++||+|+.++++.|++. |++.+.++++++++.
T Consensus 148 l~gk~VLIVDDIidTG~Tl~~~~~~L~~~---g~~~V~va~L~~K~~ 191 (241)
T PTZ00149 148 LKDKHVLIVEDIIDTGNTLVKFCEYLKKF---EPKTIRIATLFEKRT 191 (241)
T ss_pred cCCCEEEEEEeEeChHHHHHHHHHHHHhc---CCCEEEEEEEEecCc
Confidence 58999999999999999999999999999 999999999999874
No 34
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=98.86 E-value=1.1e-08 Score=70.85 Aligned_cols=45 Identities=20% Similarity=0.176 Sum_probs=42.4
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecCC
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLLE 75 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~~ 75 (78)
..+|++||||||++.||.|+.++.+.+++. |++.+.++++++++.
T Consensus 89 ~v~gk~VLlVDDIiDTG~TL~~l~~~l~~~---~~~~v~~avL~~K~~ 133 (178)
T PRK15423 89 DIRGKDVLIVEDIIDSGNTLSKVREILSLR---EPKSLAICTLLDKPS 133 (178)
T ss_pred CCCCCEEEEEeeecCchHHHHHHHHHHHhC---CCCEEEEEEEEECCC
Confidence 458999999999999999999999999999 999999999999875
No 35
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=98.77 E-value=5.1e-08 Score=72.09 Aligned_cols=40 Identities=35% Similarity=0.454 Sum_probs=36.6
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEE
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKM 70 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~ 70 (78)
..+|++|+||||+++||+|+.++++.|++. |++.+.+++.
T Consensus 208 ~v~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~---GA~~V~~~~t 247 (301)
T PRK07199 208 PWAGRTPVLVDDIVSTGRTLIEAARQLRAA---GAASPDCVVV 247 (301)
T ss_pred ccCCCEEEEEecccCcHHHHHHHHHHHHHC---CCcEEEEEEE
Confidence 358999999999999999999999999999 9998888764
No 36
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.71 E-value=2.1e-08 Score=74.65 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=35.5
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEE
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQK 69 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~ 69 (78)
.+|++|+||||+++||+|+.++++.|++. |++.+.++|
T Consensus 215 v~Gr~viIVDDIidTG~Tl~~aa~~Lk~~---GA~~V~~~~ 252 (320)
T PRK02269 215 VKGKKCILIDDMIDTAGTICHAADALAEA---GATEVYASC 252 (320)
T ss_pred cCCCEEEEEeeecCcHHHHHHHHHHHHHC---CCCEEEEEE
Confidence 47999999999999999999999999999 999888765
No 37
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=98.71 E-value=5.6e-08 Score=69.14 Aligned_cols=45 Identities=18% Similarity=0.085 Sum_probs=42.0
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecCC
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLLE 75 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~~ 75 (78)
..+|++|||||||+.||.|+.++.+.|++. +++.+..+++++++.
T Consensus 115 ~i~gk~VLIVDDIvDTG~TL~~v~~~l~~~---~p~svk~avL~dK~~ 159 (211)
T PTZ00271 115 SVENRHILIVEDIVDSAITLQYLMRFMLAK---KPASLKTVVLLDKPS 159 (211)
T ss_pred CCCCCEEEEEecccCCHHHHHHHHHHHHhc---CCCEEEEEEEEEccc
Confidence 357999999999999999999999999999 999999999999953
No 38
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.70 E-value=2.8e-08 Score=72.68 Aligned_cols=40 Identities=33% Similarity=0.459 Sum_probs=37.2
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEE
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMV 71 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v 71 (78)
.+|++|+||||+++||+|+.++.+.|++. |++.+.++++-
T Consensus 202 v~Gk~VlIVDDIi~TG~Tl~~aa~~Lk~~---GA~~V~~~~~H 241 (285)
T PRK00934 202 VKGKDVLIVDDIISTGGTMATAIKILKEQ---GAKKVYVACVH 241 (285)
T ss_pred cCCCEEEEEcCccccHHHHHHHHHHHHHC---CCCEEEEEEEe
Confidence 47999999999999999999999999999 99998888863
No 39
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=98.68 E-value=5.7e-08 Score=72.95 Aligned_cols=51 Identities=27% Similarity=0.330 Sum_probs=40.8
Q ss_pred cceeEEEEccccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEE
Q 034952 17 GKDVMEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKM 70 (78)
Q Consensus 17 g~~~~~~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~ 70 (78)
|............+|++|+||||+++||+|+.++.+.|++. |++.+.+++.
T Consensus 216 g~~~~~~~~~~dv~gr~vlIVDDIidTG~Tl~~aa~~L~~~---Ga~~V~~~~T 266 (326)
T PLN02297 216 GDKRIVRIKEGNPAGRHVVIVDDLVQSGGTLIECQKVLAAH---GAAKVSAYVT 266 (326)
T ss_pred CCceEEEecccccCCCeEEEEecccCcHHHHHHHHHHHHHC---CCcEEEEEEE
Confidence 43333333334458999999999999999999999999999 9998888763
No 40
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=98.67 E-value=3e-08 Score=77.55 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=36.9
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEE
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKM 70 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~ 70 (78)
.+|++|+||||++|||+|+.++++.|+++ |++.+.++++
T Consensus 356 v~gK~VlLVDDvitTGaTl~~~~~~L~~a---GA~~V~v~v~ 394 (501)
T PRK09246 356 FKGKNVLLVDDSIVRGTTSEQIVQMAREA---GAKKVYFASA 394 (501)
T ss_pred ccCCeEEEEeccccccHHHHHHHHHHHHc---CCCEEEEEEE
Confidence 57999999999999999999999999999 9999988876
No 41
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=98.67 E-value=5e-08 Score=75.40 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=35.1
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEE
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQK 69 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~ 69 (78)
.+|++|+||||++|||+|+.++++.|+++ |++.+.+++
T Consensus 338 v~gK~VlLVDDvitTG~Tl~~a~~~Lr~a---GA~~V~v~~ 375 (445)
T PRK08525 338 LEGKRIVVIDDSIVRGTTSKKIVSLLRAA---GAKEIHLRI 375 (445)
T ss_pred cCCCeEEEEecccCcHHHHHHHHHHHHhc---CCCEEEEEE
Confidence 57999999999999999999999999999 998877665
No 42
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.65 E-value=1.2e-07 Score=70.68 Aligned_cols=38 Identities=34% Similarity=0.322 Sum_probs=35.6
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEE
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQK 69 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~ 69 (78)
.+|++++||||+++||+|+.++++.|++. |++.+.+++
T Consensus 215 v~Gr~viIVDDIidTG~Tl~~aa~~Lk~~---GA~~V~~~~ 252 (319)
T PRK04923 215 VQGKTCVLVDDLVDTAGTLCAAAAALKQR---GALKVVAYI 252 (319)
T ss_pred CCCCEEEEEecccCchHHHHHHHHHHHHC---CCCEEEEEE
Confidence 58999999999999999999999999999 999888765
No 43
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=98.64 E-value=5.6e-08 Score=76.13 Aligned_cols=40 Identities=25% Similarity=0.290 Sum_probs=37.9
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEE
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKM 70 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~ 70 (78)
..+|++|+||||++|||+|+.+++++|+++ |++.+.+++.
T Consensus 347 ~~~gk~vllVDDvittG~T~~~~~~~L~~~---Ga~~v~~~~~ 386 (484)
T PRK07272 347 VVKGKRVVMVDDSIVRGTTSRRIVQLLKEA---GAKEVHVAIA 386 (484)
T ss_pred ccCCCEEEEEccccCchHHHHHHHHHHHhc---CCcEEEEEEe
Confidence 457999999999999999999999999999 9999999988
No 44
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=98.64 E-value=1.7e-07 Score=65.76 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=39.3
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecC
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLL 74 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~ 74 (78)
.++++|+|+||+++||+|+.++++.|++. |++.+.+++++..+
T Consensus 120 i~~~~VllvDd~laTG~Tl~~ai~~L~~~---G~~~I~v~~ll~~~ 162 (207)
T TIGR01091 120 IDERTVIVLDPMLATGGTMIAALDLLKKR---GAKKIKVLSIVAAP 162 (207)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHHHHc---CCCEEEEEEEecCH
Confidence 47899999999999999999999999999 99988888887653
No 45
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=98.61 E-value=2.4e-07 Score=64.98 Aligned_cols=43 Identities=28% Similarity=0.329 Sum_probs=39.5
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecC
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLL 74 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~ 74 (78)
.+|++|+|+||+++||+|+.++++.|++. |++.+.+++++..+
T Consensus 122 i~~~~VllvDd~laTG~Tl~~ai~~L~~~---G~~~I~~~~ll~~~ 164 (209)
T PRK00129 122 IDERTVIVVDPMLATGGSAIAAIDLLKKR---GAKNIKVLCLVAAP 164 (209)
T ss_pred CCCCEEEEECCcccchHHHHHHHHHHHHc---CCCEEEEEEEecCH
Confidence 47899999999999999999999999999 99999998887654
No 46
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.60 E-value=6.3e-08 Score=72.31 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=35.2
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEE
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQK 69 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~ 69 (78)
.+|++++||||+++||+|+.++++.|++. |++.+.+++
T Consensus 216 V~gk~viIVDDIidTG~Tl~~aa~~Lk~~---GA~~V~~~~ 253 (323)
T PRK02458 216 VAGKKAILIDDILNTGKTFAEAAKIVERE---GATEIYAVA 253 (323)
T ss_pred cCCCEEEEEcceeCcHHHHHHHHHHHHhC---CCCcEEEEE
Confidence 47999999999999999999999999999 998877765
No 47
>PLN02440 amidophosphoribosyltransferase
Probab=98.59 E-value=7.6e-08 Score=75.03 Aligned_cols=40 Identities=23% Similarity=0.290 Sum_probs=37.2
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEE
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMV 71 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v 71 (78)
.+|++||||||++|||+|+.++++.|+++ |++.+.+++..
T Consensus 338 v~gk~VlLVDDiittGtTl~~i~~~L~~a---Ga~~V~v~v~~ 377 (479)
T PLN02440 338 LEGKRVVVVDDSIVRGTTSSKIVRMLREA---GAKEVHMRIAS 377 (479)
T ss_pred ccCceEEEEeceeCcHHHHHHHHHHHHhc---CCCEEEEEEEC
Confidence 57999999999999999999999999999 99988887764
No 48
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.58 E-value=1e-07 Score=71.52 Aligned_cols=38 Identities=34% Similarity=0.467 Sum_probs=35.9
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEE
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQK 69 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~ 69 (78)
.+|++|+||||+++||+|+.++.+.|++. |++.+.+++
T Consensus 216 v~Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~---GA~~V~~~a 253 (332)
T PRK00553 216 VKNKNCLIVDDMIDTGGTVIAAAKLLKKQ---KAKKVCVMA 253 (332)
T ss_pred CCCCEEEEEeccccchHHHHHHHHHHHHc---CCcEEEEEE
Confidence 47999999999999999999999999999 999988876
No 49
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=98.57 E-value=9.1e-08 Score=73.85 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=36.1
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEE
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKM 70 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~ 70 (78)
.+|++|+||||++|||+|+.+++++|+++ |++.+.+.+.
T Consensus 336 ~~gk~v~lvDD~ittG~T~~~~~~~l~~~---ga~~v~~~~~ 374 (442)
T TIGR01134 336 FRGKRVVLVDDSIVRGTTSRQIVKMLRDA---GAKEVHVRIA 374 (442)
T ss_pred CCCCEEEEEeccccccHHHHHHHHHHHHc---CCcEEEEEEc
Confidence 47999999999999999999999999999 9999887655
No 50
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=98.57 E-value=2.5e-07 Score=62.61 Aligned_cols=49 Identities=29% Similarity=0.295 Sum_probs=36.6
Q ss_pred ceeEEEEccccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecC
Q 034952 18 KDVMEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLL 74 (78)
Q Consensus 18 ~~~~~~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~ 74 (78)
++..++......+|++||||||++.||+|+.++.+.+.+. ..+++.+++
T Consensus 71 ~~~~~~~~~~~~~gk~VLIVDDIiDTG~Tl~~v~~~l~~v--------~~a~l~~K~ 119 (156)
T PRK09177 71 QGELKVLKRAEGDGEGFLVVDDLVDTGGTARAVREMYPKA--------HFATVYAKP 119 (156)
T ss_pred CCcEEEecCCCcCcCEEEEEeeeeCCHHHHHHHHHHHhhC--------CEEEEEECc
Confidence 3344444444568999999999999999999999988653 355666665
No 51
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=98.57 E-value=9.1e-08 Score=71.82 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=36.3
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEE
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKM 70 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~ 70 (78)
.+|++++||||++.||+|+..|+++|++. ||+.+.++|.
T Consensus 212 V~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~---GAk~V~a~~t 250 (314)
T COG0462 212 VEGKDVVIVDDIIDTGGTIAKAAKALKER---GAKKVYAAAT 250 (314)
T ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHC---CCCeEEEEEE
Confidence 48999999999999999999999999999 9998888763
No 52
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.57 E-value=1.5e-07 Score=65.92 Aligned_cols=44 Identities=27% Similarity=0.270 Sum_probs=42.3
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecCC
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLLE 75 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~~ 75 (78)
.+|++||||||++.||.|+..+.++|+.+ |++.+.+++++|++.
T Consensus 91 i~grdVLiVeDIiDsG~TLs~i~~~l~~r---~a~sv~i~tLldK~~ 134 (178)
T COG0634 91 IKGRDVLIVEDIIDSGLTLSKVRDLLKER---GAKSVRIATLLDKPE 134 (178)
T ss_pred CCCCeEEEEecccccChhHHHHHHHHHhC---CCCeEEEEEEeeCcc
Confidence 58999999999999999999999999999 999999999999975
No 53
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.56 E-value=4.3e-07 Score=67.33 Aligned_cols=39 Identities=26% Similarity=0.311 Sum_probs=36.4
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEE
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKM 70 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~ 70 (78)
.+|++|+||||+++||+|+.++++.|++. |++.+.+++.
T Consensus 206 ~~g~~vliVDDii~TG~T~~~a~~~l~~~---Ga~~v~~~~t 244 (309)
T PRK01259 206 VEGRDCILVDDMIDTAGTLCKAAEALKER---GAKSVYAYAT 244 (309)
T ss_pred CCCCEEEEEecccCcHHHHHHHHHHHHcc---CCCEEEEEEE
Confidence 57999999999999999999999999999 9999888774
No 54
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=98.56 E-value=1e-07 Score=74.15 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=35.3
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEE
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQK 69 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~ 69 (78)
.+|++|+||||+++||+|+.++++.|+++ |++.+.+.+
T Consensus 351 v~gk~VlLVDD~ItTGtTl~~~~~~Lr~a---GAk~V~~~~ 388 (469)
T PRK05793 351 VEGKRVVLIDDSIVRGTTSKRLVELLRKA---GAKEVHFRV 388 (469)
T ss_pred cCCCEEEEEccccCchHHHHHHHHHHHHc---CCCEEEEEE
Confidence 47999999999999999999999999999 999887765
No 55
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=98.55 E-value=1.1e-07 Score=74.18 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=35.5
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEE
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQK 69 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~ 69 (78)
..+|++|+||||++|||.|+.+++++|+++ |++.+.+..
T Consensus 345 ~i~gk~VlLVDDvittGtTl~~~~~~Lk~a---GA~eV~v~i 383 (471)
T PRK06781 345 VVEGKRVVMIDDSIVRGTTSKRIVRMLREA---GATEVHVRI 383 (471)
T ss_pred ccCCceEEEEeceeccchHHHHHHHHHHHc---CCcEEEEEE
Confidence 457999999999999999999999999999 998887653
No 56
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.54 E-value=1.3e-07 Score=69.96 Aligned_cols=38 Identities=29% Similarity=0.411 Sum_probs=35.8
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEE
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQK 69 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~ 69 (78)
.+|++|+||||+++||+|+.++++.|++. |++.+.+++
T Consensus 199 v~gr~viIVDDIi~TG~Tl~~aa~~Lk~~---Ga~~I~~~~ 236 (304)
T PRK03092 199 VEGRTCVLVDDMIDTGGTIAGAVRALKEA---GAKDVIIAA 236 (304)
T ss_pred CCCCEEEEEccccCcHHHHHHHHHHHHhc---CCCeEEEEE
Confidence 47999999999999999999999999999 999888877
No 57
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=98.52 E-value=1.5e-07 Score=73.52 Aligned_cols=38 Identities=21% Similarity=0.465 Sum_probs=34.5
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEE
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQ 68 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~ 68 (78)
..+|++|+||||++|||+|+.+++++|+++ |++.+...
T Consensus 353 ~i~gk~VlLVDDsittGtTl~~~~~~L~~a---Gak~V~~r 390 (474)
T PRK06388 353 VISGKRIVLVDDSIVRGNTMRFIVKIMRKY---GAKEVHVR 390 (474)
T ss_pred cccCceEEEEeCeECcHHHHHHHHHHHHHc---CCCEEEEE
Confidence 347899999999999999999999999999 99887764
No 58
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=98.51 E-value=1.6e-07 Score=72.87 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=34.8
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEE
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQK 69 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~ 69 (78)
.+|++|+||||++|||+|+.+++++|+++ |++.+.+..
T Consensus 332 v~gk~VlLVDD~IttGtTl~~~~~~L~~a---GAk~V~~~~ 369 (442)
T PRK08341 332 INGKRVVLVDDSIVRGTTMKRIVKMLRDA---GAREVHVRI 369 (442)
T ss_pred cCCCEEEEEeeeeccHHHHHHHHHHHHhc---CCcEEEEEE
Confidence 47999999999999999999999999999 998777654
No 59
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=98.51 E-value=1.9e-07 Score=73.48 Aligned_cols=38 Identities=29% Similarity=0.328 Sum_probs=34.7
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEE
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQ 68 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~ 68 (78)
..+|++|+||||++|||.|+.+++++|+++ |++.+...
T Consensus 374 ~~~gkrVlLVDDvIttGtTl~~~~~~Lr~a---GAkeV~~~ 411 (500)
T PRK07349 374 VLAGKRIIIVDDSIVRGTTSRKIVKALRDA---GATEVHMR 411 (500)
T ss_pred ccCCCEEEEEeceeCCcHHHHHHHHHHHHh---CCeEEEEE
Confidence 347999999999999999999999999999 99988664
No 60
>PLN02541 uracil phosphoribosyltransferase
Probab=98.50 E-value=2.7e-07 Score=67.00 Aligned_cols=43 Identities=37% Similarity=0.406 Sum_probs=35.3
Q ss_pred ccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCe--EEEEEEEEe
Q 034952 27 AVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFH--LERCQKMVL 72 (78)
Q Consensus 27 ~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~--~~~~~~~v~ 72 (78)
.+.++++|+|+||+++||+|+.++++.|++. |++ -+.+++++.
T Consensus 153 ~i~~~~~VlllDpmLATGgS~~~ai~~L~~~---Gv~~~~I~~v~~ia 197 (244)
T PLN02541 153 KFPEGSRVLVVDPMLATGGTIVAAIDELVSR---GASVEQIRVVCAVA 197 (244)
T ss_pred hcCCCCEEEEECcchhhhHHHHHHHHHHHHc---CCCcccEEEEEEEE
Confidence 3445789999999999999999999999999 986 455555543
No 61
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=98.49 E-value=2.1e-07 Score=68.81 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=35.7
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEE
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQK 69 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~ 69 (78)
.+|++|+||||+++||+|+.++++.|++. |++.+.+++
T Consensus 200 v~g~~viivDDii~TG~Tl~~a~~~l~~~---Ga~~v~~~~ 237 (302)
T PLN02369 200 VKGKVAIMVDDMIDTAGTITKGAALLHQE---GAREVYACA 237 (302)
T ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHhC---CCCEEEEEE
Confidence 47999999999999999999999999999 999888877
No 62
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=98.49 E-value=2.1e-07 Score=72.76 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=35.1
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEE
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQK 69 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~ 69 (78)
..+|++|+||||++|||+|+.++++.|+++ |++.+.+..
T Consensus 345 ~v~gk~VlLVDDsittGtTl~~~~~~L~~a---GA~eV~v~~ 383 (475)
T PRK07631 345 VVEGKRVVMVDDSIVRGTTSRRIVTMLREA---GATEVHVRI 383 (475)
T ss_pred ccCCceEEEEeeeeccHHHHHHHHHHHHHc---CCCEEEEEE
Confidence 357999999999999999999999999999 998877643
No 63
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=98.47 E-value=2.3e-07 Score=72.24 Aligned_cols=38 Identities=26% Similarity=0.299 Sum_probs=35.7
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEE
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQK 69 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~ 69 (78)
.+|++++||||+++||+|+.++++.|++. |++.+.+++
T Consensus 333 V~Gk~vIIVDDIIdTG~Tl~~aa~~Lk~~---GA~~V~~~~ 370 (439)
T PTZ00145 333 VYDSDVIIVDDMIDTSGTLCEAAKQLKKH---GARRVFAFA 370 (439)
T ss_pred CCCCEEEEEcceeCcHHHHHHHHHHHHHc---CCCEEEEEE
Confidence 48999999999999999999999999999 999888776
No 64
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=98.47 E-value=2.9e-07 Score=70.43 Aligned_cols=42 Identities=26% Similarity=0.311 Sum_probs=37.8
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEe
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVL 72 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~ 72 (78)
..+|++|+||||+++||+|+.++++.|++. |++.+.+++..-
T Consensus 261 dV~gr~vIIVDDII~TG~Tl~~aa~~Lk~~---GA~~V~~~~tH~ 302 (382)
T PRK06827 261 DVEGKDVLIVDDMIASGGSMIDAAKELKSR---GAKKIIVAATFG 302 (382)
T ss_pred ccCCCEEEEEeCCcCcHHHHHHHHHHHHHc---CCCEEEEEEEee
Confidence 347999999999999999999999999999 999888877653
No 65
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.45 E-value=3.2e-07 Score=68.84 Aligned_cols=38 Identities=32% Similarity=0.471 Sum_probs=35.5
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEE
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQK 69 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~ 69 (78)
.+|++|+||||+++||+|+.++++.|++. |++.+.+++
T Consensus 228 v~g~~viiVDDii~TG~T~~~a~~~L~~~---Ga~~v~~~~ 265 (330)
T PRK02812 228 VKGKTAILVDDMIDTGGTICEGARLLRKE---GAKQVYACA 265 (330)
T ss_pred CCCCEEEEEccccCcHHHHHHHHHHHhcc---CCCeEEEEE
Confidence 47999999999999999999999999999 998888776
No 66
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=98.39 E-value=6.3e-07 Score=66.16 Aligned_cols=41 Identities=27% Similarity=0.330 Sum_probs=37.0
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEE
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMV 71 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v 71 (78)
..+|++|+||||+++||+|+.++++.|++. |++.+.+++..
T Consensus 207 ~v~g~~vliVDDii~tG~Tl~~a~~~l~~~---ga~~v~~~~th 247 (308)
T TIGR01251 207 DVEGKDVVIVDDIIDTGGTIAKAAEILKSA---GAKRVIAAATH 247 (308)
T ss_pred ccCCCEEEEEccccCCHHHHHHHHHHHHhc---CCCEEEEEEEe
Confidence 347999999999999999999999999999 99988877753
No 67
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=98.36 E-value=6.4e-07 Score=62.95 Aligned_cols=38 Identities=34% Similarity=0.428 Sum_probs=34.4
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEE
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQK 69 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~ 69 (78)
-.|+.++||||++.||+|+.+++++|++. ||+.+.+.+
T Consensus 81 V~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~---GA~~V~~~a 118 (184)
T PF14572_consen 81 VKGKICIIVDDIIDTGGTLIKAAELLKER---GAKKVYACA 118 (184)
T ss_dssp -TTSEEEEEEEEESSTHHHHHHHHHHHHT---TESEEEEEE
T ss_pred ccCCeEeeecccccchHHHHHHHHHHHHc---CCCEEEEEE
Confidence 37999999999999999999999999999 998777654
No 68
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=98.36 E-value=6.9e-07 Score=69.84 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=35.4
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEE
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQK 69 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~ 69 (78)
.+|++|+||||+++||.|+.++++.|+++ |++.+.+.+
T Consensus 358 ~~gk~vvlvDD~i~tG~Tl~~~~~~l~~~---Ga~~v~~~~ 395 (479)
T PRK09123 358 IEGKRVVLVDDSIVRGTTSRKIVQMLRDA---GAKEVHLRI 395 (479)
T ss_pred cCCCEEEEEeceeCchHHHHHHHHHHHHc---CCCEEEEEE
Confidence 57999999999999999999999999999 999888765
No 69
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=98.33 E-value=9.7e-07 Score=69.64 Aligned_cols=37 Identities=27% Similarity=0.359 Sum_probs=33.9
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEE
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQ 68 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~ 68 (78)
.+|++|+||||++|||.|+.++++.|+++ |++.+...
T Consensus 365 ~~gk~vllVDD~ittG~T~~~~~~~L~~~---ga~~v~~r 401 (510)
T PRK07847 365 IRGKRLVVVDDSIVRGNTQRALVRMLREA---GAAEVHVR 401 (510)
T ss_pred cCCCEEEEEecccCchHHHHHHHHHHHHc---CCCEEEEE
Confidence 58999999999999999999999999999 99877653
No 70
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.25 E-value=1.9e-06 Score=60.24 Aligned_cols=43 Identities=28% Similarity=0.298 Sum_probs=38.2
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCC-eEEEEEEEEecC
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNF-HLERCQKMVLLL 74 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~-~~~~~~~~v~~~ 74 (78)
..|++|++|||++.||+|+.+|++.|..+ |- ..+..+|++|+-
T Consensus 94 i~~k~VILVDDVLytGRTIRAAldal~d~---GRPa~I~LavLVDRG 137 (179)
T COG2065 94 ITGKRVILVDDVLYTGRTIRAALDALVDY---GRPAKIQLAVLVDRG 137 (179)
T ss_pred ccCCEEEEEeeecccCccHHHHHHHHHhc---CCcceEEEEEEEcCC
Confidence 47999999999999999999999999998 54 678889999863
No 71
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.00 E-value=1.1e-05 Score=57.30 Aligned_cols=43 Identities=23% Similarity=0.407 Sum_probs=40.2
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecC
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLL 74 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~ 74 (78)
..|++||||||++.||+|+...++.+++. +++-+.++.++.++
T Consensus 123 ltgK~VliVeDIvdTGrTl~~Lls~~~~~---k~~~v~vasLL~Kr 165 (216)
T KOG3367|consen 123 LTGKNVLIVEDIVDTGRTLSTLLSHMKAY---KPSMVKVASLLVKR 165 (216)
T ss_pred hcCCcEEEEEeeccccchHHHHHHHHHhc---Cccceeeeeecccc
Confidence 58999999999999999999999999999 99999998888765
No 72
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=97.88 E-value=7.6e-06 Score=57.75 Aligned_cols=29 Identities=45% Similarity=0.654 Sum_probs=27.5
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhch
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRF 57 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~ 57 (78)
..|+|||||||+..||.||..+.+.|++.
T Consensus 85 l~GkkVLIVDDI~DTG~Tl~~a~~~l~~~ 113 (192)
T COG2236 85 LSGKKVLIVDDIVDTGETLELALEELKKL 113 (192)
T ss_pred cCCCeEEEEecccCchHhHHHHHHHHHhh
Confidence 58999999999999999999999999995
No 73
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=97.81 E-value=0.0002 Score=50.22 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=33.5
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHhchhcCCC--eEEEEEEEE
Q 034952 30 AGERALIVDDLVATGGTLFAAIRLLGRFVSFNF--HLERCQKMV 71 (78)
Q Consensus 30 ~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~--~~~~~~~~v 71 (78)
++++|+|+|.+++||+|+.++++.|++. |+ +.+.+++++
T Consensus 120 ~~~~VillDpmlaTG~s~~~ai~~L~~~---G~~~~~I~~v~~i 160 (207)
T PF14681_consen 120 ENRKVILLDPMLATGGSAIAAIEILKEH---GVPEENIIIVSVI 160 (207)
T ss_dssp TTSEEEEEESEESSSHHHHHHHHHHHHT---TG-GGEEEEEEEE
T ss_pred cCCEEEEEeccccchhhHHHHHHHHHHc---CCCcceEEEEEEE
Confidence 7899999999999999999999999998 76 455555554
No 74
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=97.72 E-value=6.3e-05 Score=54.25 Aligned_cols=38 Identities=32% Similarity=0.293 Sum_probs=34.2
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEE
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQK 69 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~ 69 (78)
.++++|+||||=++||.||.++++.+++. +++-+.+++
T Consensus 122 ~~g~~VIlVDDGiATGatm~aAi~~~r~~---~~~~IviAV 159 (220)
T COG1926 122 LKGRTVILVDDGIATGATMKAAVRALRAK---GPKEIVIAV 159 (220)
T ss_pred CCCCEEEEEeCCcchhHHHHHHHHHHHhc---CCceEEEEc
Confidence 57999999999999999999999999999 887766654
No 75
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=97.72 E-value=6.1e-05 Score=54.00 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=37.8
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecC
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLL 74 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~ 74 (78)
..+++.++|+|.+++||+|+..|++.|+++ | |++.+.+.|++..+
T Consensus 121 ~~~~~~viv~DPMLATG~s~i~ai~~L~~~-G-~~~~I~~v~~vAap 165 (210)
T COG0035 121 DIDERTVIVLDPMLATGGSAIAAIDLLKKR-G-GPKNIKVVSLVAAP 165 (210)
T ss_pred cccCCeEEEECchhhccHhHHHHHHHHHHh-C-CCceEEEEEEEecH
Confidence 357899999999999999999999999998 3 55677777777543
No 76
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=97.59 E-value=0.00018 Score=50.96 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=37.0
Q ss_pred ccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEec
Q 034952 27 AVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLL 73 (78)
Q Consensus 27 ~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~ 73 (78)
.+...+.+++|||=+|||+|+...++.|++.+ .-+...++.++|-
T Consensus 117 ~l~~~~~lVLVDDEiSTG~T~lnli~al~~~~--p~~~yvvasL~d~ 161 (191)
T PF15609_consen 117 LLRNARTLVLVDDEISTGNTFLNLIRALHAKY--PRKRYVVASLLDW 161 (191)
T ss_pred HhcCCCCEEEEecCccchHHHHHHHHHHHHhC--CCceEEEEEEeeC
Confidence 34567899999999999999999999999984 4566666777775
No 77
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=97.31 E-value=0.00035 Score=52.66 Aligned_cols=38 Identities=29% Similarity=0.268 Sum_probs=34.6
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEE
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQK 69 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~ 69 (78)
.+|+.++||||++.|++|+..+.+.|.+. ||+.+.+.+
T Consensus 212 v~gkvailVDDm~dt~GTl~~aa~~L~~~---GA~kV~a~~ 249 (316)
T KOG1448|consen 212 VKGKVAILVDDMADTCGTLIKAADKLLEH---GAKKVYAIV 249 (316)
T ss_pred cCCcEEEEecccccccchHHHHHHHHHhc---CCceEEEEE
Confidence 47999999999999999999999999999 998877654
No 78
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.00097 Score=52.62 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=35.1
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEE
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQ 68 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~ 68 (78)
..+||||++|||=+-.|.|+...+++|+++ ||+.+.+.
T Consensus 345 ~v~GKrVvlVDDSIVRGTTsr~IV~mlReA---GAkEVHvr 382 (470)
T COG0034 345 VVKGKRVVLVDDSIVRGTTSRRIVQMLREA---GAKEVHVR 382 (470)
T ss_pred HhCCCeEEEEccccccCccHHHHHHHHHHh---CCCEEEEE
Confidence 347999999999999999999999999999 99988764
No 79
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=96.65 E-value=0.0023 Score=50.10 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=34.9
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEE
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQ 68 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~ 68 (78)
..+|+||+||||=+--|+|+...+++|+++ ||+.+...
T Consensus 353 ~~~GKrvvlVDDSIVRGtTs~~IVkmlrea---GAkeVh~r 390 (474)
T KOG0572|consen 353 NFEGKRVVLVDDSIVRGTTSSPIVKMLREA---GAKEVHIR 390 (474)
T ss_pred hcCCceEEEEecceeccCchHHHHHHHHHc---CCcEEEEE
Confidence 358999999999999999999999999999 99988764
No 80
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=93.54 E-value=0.25 Score=36.15 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=28.6
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHhchhcCCCe
Q 034952 30 AGERALIVDDLVATGGTLFAAIRLLGRFVSFNFH 63 (78)
Q Consensus 30 ~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~ 63 (78)
..++||+.=++++||+|+..|++.|+++ |..
T Consensus 188 ~sR~VLLmYPi~stGnTV~~Av~VL~Eh---gVp 218 (267)
T KOG1017|consen 188 TSRRVLLMYPIISTGNTVCKAVEVLKEH---GVP 218 (267)
T ss_pred cceeEEEEeeeecCCccHHHHHHHHHHc---CCC
Confidence 4689999999999999999999999999 764
No 81
>PF15610 PRTase_3: PRTase ComF-like
Probab=91.73 E-value=0.19 Score=37.48 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=33.9
Q ss_pred eEEEEccccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeE
Q 034952 20 VMEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHL 64 (78)
Q Consensus 20 ~~~~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~ 64 (78)
.+.+.. ...+|+.++.+|||-.||++-..+.+.+++. |++-
T Consensus 128 ~y~ID~-~~l~gk~lIflDDIkITGshE~~V~~~~~~~---~~~~ 168 (274)
T PF15610_consen 128 TYHIDK-EFLSGKHLIFLDDIKITGSHEDKVRKILKEY---GLEN 168 (274)
T ss_pred ceEecH-HHhCCcEEEEeccEEecCcHHHHHHHHHHHc---Cccc
Confidence 344443 3458999999999999999999999999999 8865
No 82
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=89.62 E-value=0.66 Score=34.97 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=32.8
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEE
Q 034952 30 AGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQK 69 (78)
Q Consensus 30 ~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~ 69 (78)
.|+-.++|||++..-.+-.+|.+.|++. |+-.+.+.+
T Consensus 246 ggriaimvddiiddvqsfvaaae~lker---gaykiyv~a 282 (354)
T KOG1503|consen 246 GGRIAIMVDDIIDDVQSFVAAAEVLKER---GAYKIYVMA 282 (354)
T ss_pred CceEEEEehhhHHhHHHHHHHHHHHHhc---CceEEEEEe
Confidence 5778899999999999999999999999 998776643
No 83
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=73.94 E-value=2.9 Score=27.74 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=18.0
Q ss_pred CCEEEEEeccccchHHHHHHHHHHhc
Q 034952 31 GERALIVDDLVATGGTLFAAIRLLGR 56 (78)
Q Consensus 31 g~~vlIVDDvitTG~Ti~~~~~~l~~ 56 (78)
.+.=+|+|.+.-||+|+.+|.++=++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R~ 215 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGRR 215 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT-E
T ss_pred ccceeeehhhhccChHHHHHHHcCCe
Confidence 33457899999999999988875444
No 84
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=60.57 E-value=17 Score=25.03 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=19.8
Q ss_pred CEEEEEeccccchHHHHHHH-HHHhchhcCCCeEEEEEE
Q 034952 32 ERALIVDDLVATGGTLFAAI-RLLGRFVSFNFHLERCQK 69 (78)
Q Consensus 32 ~~vlIVDDvitTG~Ti~~~~-~~l~~~~~~g~~~~~~~~ 69 (78)
..=+||||++-.+.-+.... ++|..+ ..-.+++.|
T Consensus 83 G~~VIvD~v~~~~~~l~d~l~~~L~~~---~vl~VgV~C 118 (174)
T PF07931_consen 83 GNNVIVDDVFLGPRWLQDCLRRLLAGL---PVLFVGVRC 118 (174)
T ss_dssp T-EEEEEE--TTTHHHHHHHHHHHTTS----EEEEEEE-
T ss_pred CCCEEEecCccCcHHHHHHHHHHhCCC---ceEEEEEEC
Confidence 35578999999998766666 666555 444444433
No 85
>PRK11524 putative methyltransferase; Provisional
Probab=60.27 E-value=7.6 Score=28.09 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=21.6
Q ss_pred CCEEEEEeccccchHHHHHHHHHHhch
Q 034952 31 GERALIVDDLVATGGTLFAAIRLLGRF 57 (78)
Q Consensus 31 g~~vlIVDDvitTG~Ti~~~~~~l~~~ 57 (78)
...=+|+|.+.-||+|+.+|.++=+++
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR~~ 233 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGRKF 233 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCCCE
Confidence 444568999999999999998865554
No 86
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=57.24 E-value=29 Score=19.41 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=25.4
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeE
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHL 64 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~ 64 (78)
..+++++++.+ .+|.....+...|++. |.+-
T Consensus 53 ~~~~~~iv~~c---~~g~~a~~~~~~l~~~---G~~~ 83 (100)
T smart00450 53 LDKDKPVVVYC---RSGNRSAKAAWLLREL---GFKN 83 (100)
T ss_pred CCCCCeEEEEe---CCCcHHHHHHHHHHHc---CCCc
Confidence 45788999998 5788888899999998 8764
No 87
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=57.14 E-value=38 Score=20.09 Aligned_cols=25 Identities=36% Similarity=0.385 Sum_probs=16.1
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHhch
Q 034952 30 AGERALIVDDLVATGGTLFAAIRLLGRF 57 (78)
Q Consensus 30 ~g~~vlIVDDvitTG~Ti~~~~~~l~~~ 57 (78)
.+.+||+||| .-.......+.+...
T Consensus 4 ~~~~vLivdD---~~~~~~~~~~~l~~~ 28 (130)
T COG0784 4 SGLRVLVVDD---EPVNRRLLKRLLEDL 28 (130)
T ss_pred CCcEEEEEcC---CHHHHHHHHHHHHHc
Confidence 5679999999 334444455555556
No 88
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=52.65 E-value=50 Score=24.54 Aligned_cols=42 Identities=14% Similarity=-0.007 Sum_probs=36.4
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEe
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVL 72 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~ 72 (78)
-..|++|+||-.==+......+..++|+++ |+++.+...+-+
T Consensus 80 ~L~g~~V~vV~~p~a~~~~~~~v~~~L~~A---GA~v~g~i~lt~ 121 (308)
T PF11382_consen 80 RLTGRSVAVVTLPGADDEDVDAVRELLEQA---GATVTGRITLTD 121 (308)
T ss_pred ccCCCEEEEEEcCCCChHHHHHHHHHHHHC---CCeEEEEEEEch
Confidence 358999999997667889999999999999 999998877654
No 89
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=52.16 E-value=15 Score=29.24 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=23.5
Q ss_pred EEEEeccccchHHHHHHHHHHhch
Q 034952 34 ALIVDDLVATGGTLFAAIRLLGRF 57 (78)
Q Consensus 34 vlIVDDvitTG~Ti~~~~~~l~~~ 57 (78)
|++.|.+++||++...|+..+...
T Consensus 389 V~ll~p~~~tg~~~~~a~~~ll~~ 412 (473)
T KOG4203|consen 389 VLLLDPVLATGNSAMMAIILLLDH 412 (473)
T ss_pred eeeecchhhcchhHHHHHHHHHhC
Confidence 999999999999999999999998
No 90
>PRK06824 translation initiation factor Sui1; Validated
Probab=51.10 E-value=69 Score=21.06 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=34.0
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEE
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLER 66 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~ 66 (78)
..|+.|-+|+-+-.....+.+.++.|++.++.|+.+..
T Consensus 52 r~gK~VTvI~Gl~~~~~dlk~l~K~LKkk~gcGGtvkd 89 (118)
T PRK06824 52 RGGKTVTVITGVPLAEDALKELAKELKRRCGTGGTLKD 89 (118)
T ss_pred CCCceEEEEeCCcCCHHHHHHHHHHHHHHhcCCceEec
Confidence 46899999999988999999999999999888888765
No 91
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=50.07 E-value=27 Score=20.55 Aligned_cols=38 Identities=11% Similarity=0.108 Sum_probs=25.5
Q ss_pred CCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEE
Q 034952 31 GERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQK 69 (78)
Q Consensus 31 g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~ 69 (78)
...+.+++|...+=.++.++++.+++.+. +.+++.+..
T Consensus 11 ~~~~~vi~D~ahNp~s~~a~l~~l~~~~~-~~~~i~V~G 48 (91)
T PF02875_consen 11 PNGPTVIDDYAHNPDSIRALLEALKELYP-KGRIIAVFG 48 (91)
T ss_dssp ETTEEEEEET--SHHHHHHHHHHHHHHCT-TSEEEEEEE
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHHHhcc-CCcEEEEEc
Confidence 34577777899999999999999988631 244554444
No 92
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=48.96 E-value=46 Score=18.44 Aligned_cols=32 Identities=13% Similarity=0.040 Sum_probs=25.3
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEE
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLE 65 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~ 65 (78)
..++++|+++++- |.....+...|++. |..-+
T Consensus 47 ~~~~~~vv~~c~~---~~~a~~~~~~l~~~---G~~~v 78 (89)
T cd00158 47 LDKDKPIVVYCRS---GNRSARAAKLLRKA---GGTNV 78 (89)
T ss_pred cCCCCeEEEEeCC---CchHHHHHHHHHHh---CcccE
Confidence 4578899999986 77778889999988 85543
No 93
>KOG1377 consensus Uridine 5'- monophosphate synthase/orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=48.37 E-value=15 Score=27.47 Aligned_cols=43 Identities=12% Similarity=0.046 Sum_probs=28.4
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEEEecCCC
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKMVLLLEF 76 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~v~~~~~ 76 (78)
.+++++|+.||+.++|.-+.+. .+.-. .+.+.++.+..+++++
T Consensus 152 ms~kg~L~~~dy~ea~~aI~ee--~~d~~---~G~v~g~~~~ldrq~l 194 (261)
T KOG1377|consen 152 LSSKGSLITGDYTEAATAIAEE--DIDFV---NGFVAGSIVALDRQEL 194 (261)
T ss_pred eccCCceeehhHHHHHHHHHHh--hhchh---eeEEeeeeeeccHHhh
Confidence 4688899999955555555544 33333 5568888888877754
No 94
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=46.67 E-value=42 Score=19.32 Aligned_cols=31 Identities=10% Similarity=0.064 Sum_probs=25.9
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeE
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHL 64 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~ 64 (78)
+.+++.++++.+ +|.+...+...|++. |..-
T Consensus 53 ~~~~~~ivv~c~---~g~~s~~a~~~l~~~---G~~~ 83 (96)
T cd01444 53 LDRDRPVVVYCY---HGNSSAQLAQALREA---GFTD 83 (96)
T ss_pred cCCCCCEEEEeC---CCChHHHHHHHHHHc---CCce
Confidence 457889999988 888888899999998 8754
No 95
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=44.61 E-value=57 Score=19.06 Aligned_cols=29 Identities=14% Similarity=-0.096 Sum_probs=22.6
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCe
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFH 63 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~ 63 (78)
.++++|+++++ +|.....+...|++. |..
T Consensus 54 ~~~~~ivv~c~---~g~~s~~~~~~l~~~---G~~ 82 (96)
T cd01529 54 GRATRYVLTCD---GSLLARFAAQELLAL---GGK 82 (96)
T ss_pred CCCCCEEEEeC---ChHHHHHHHHHHHHc---CCC
Confidence 56789999986 677777778888887 765
No 96
>PRK13699 putative methylase; Provisional
Probab=44.45 E-value=19 Score=25.43 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=19.1
Q ss_pred EEEeccccchHHHHHHHHHHhch
Q 034952 35 LIVDDLVATGGTLFAAIRLLGRF 57 (78)
Q Consensus 35 lIVDDvitTG~Ti~~~~~~l~~~ 57 (78)
+|+|.+.-||+|+.+|.++=++.
T Consensus 166 ~vlDpf~Gsgtt~~aa~~~~r~~ 188 (227)
T PRK13699 166 IVLDPFAGSGSTCVAALQSGRRY 188 (227)
T ss_pred EEEeCCCCCCHHHHHHHHcCCCE
Confidence 79999999999999998754433
No 97
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=43.66 E-value=31 Score=21.12 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=20.7
Q ss_pred CCCEEEEEeccccchHH-----HHHHHHHHhch
Q 034952 30 AGERALIVDDLVATGGT-----LFAAIRLLGRF 57 (78)
Q Consensus 30 ~g~~vlIVDDvitTG~T-----i~~~~~~l~~~ 57 (78)
.+++++++||+-..-.. ....++++...
T Consensus 48 ~~q~vvi~DD~~~~~~~~~~~~~~~l~~l~s~~ 80 (107)
T PF00910_consen 48 QGQPVVIIDDFGQDNDGYNYSDESELIRLISSN 80 (107)
T ss_pred CCCcEEEEeecCccccccchHHHHHHHHHHhcC
Confidence 58999999999887644 55566666554
No 98
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=39.27 E-value=10 Score=20.18 Aligned_cols=19 Identities=21% Similarity=0.125 Sum_probs=16.7
Q ss_pred ccccchHHHHHHHHHHhch
Q 034952 39 DLVATGGTLFAAIRLLGRF 57 (78)
Q Consensus 39 DvitTG~Ti~~~~~~l~~~ 57 (78)
...|.|.|+..+.+.++++
T Consensus 23 g~~t~G~t~eea~~~~~ea 41 (48)
T PF03681_consen 23 GCFTQGDTLEEALENAKEA 41 (48)
T ss_dssp TCEEEESSHHHHHHHHHHH
T ss_pred ChhhcCCCHHHHHHHHHHH
Confidence 5689999999999998875
No 99
>PRK13584 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=38.61 E-value=15 Score=26.31 Aligned_cols=13 Identities=54% Similarity=0.629 Sum_probs=10.6
Q ss_pred EeccccchHHHHH
Q 034952 37 VDDLVATGGTLFA 49 (78)
Q Consensus 37 VDDvitTG~Ti~~ 49 (78)
|=|++.||+|+.+
T Consensus 148 IvDiv~TG~TLr~ 160 (204)
T PRK13584 148 IVDIVQTGTTLKA 160 (204)
T ss_pred EEEEECccHHHHH
Confidence 4489999999864
No 100
>TIGR00432 arcsn_tRNA_tgt tRNA-guanine transglycosylase, archaeosine-15-forming. This tRNA-guanine transglycosylase (tgt) differs from the tgt of E. coli and other Bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the Archaea. This enzyme from Haloferax volcanii has been purified, characterized, and partially sequenced and is the basis for identifying this family. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine. Archeoglobus fulgidus has both enzymes, while some other Archaea have just this one.
Probab=38.34 E-value=20 Score=29.04 Aligned_cols=33 Identities=33% Similarity=0.497 Sum_probs=28.4
Q ss_pred cccCCCCEEEEE---eccccchHHHHHHHHHHhchh
Q 034952 26 CAVQAGERALIV---DDLVATGGTLFAAIRLLGRFV 58 (78)
Q Consensus 26 ~~~~~g~~vlIV---DDvitTG~Ti~~~~~~l~~~~ 58 (78)
..+.+|.-|++| |+++++|.++....+++....
T Consensus 495 ~~IR~~dEV~vv~~~~~llavGra~lsg~em~~~~~ 530 (540)
T TIGR00432 495 NNIRANDEVLIVNADDELLATGKALLCAEEMMDLNH 530 (540)
T ss_pred CCCCCCCeEEEEcCCCcEEEEEehhcCHHHHHhhcC
Confidence 456789999999 789999999999999887664
No 101
>PRK01686 hisG ATP phosphoribosyltransferase catalytic subunit; Reviewed
Probab=37.39 E-value=17 Score=26.06 Aligned_cols=13 Identities=54% Similarity=0.675 Sum_probs=10.5
Q ss_pred EeccccchHHHHH
Q 034952 37 VDDLVATGGTLFA 49 (78)
Q Consensus 37 VDDvitTG~Ti~~ 49 (78)
|=|++.||+|+.+
T Consensus 158 IvDivsTG~TLr~ 170 (215)
T PRK01686 158 IVDIVETGNTLRA 170 (215)
T ss_pred EEEeecChHHHHH
Confidence 4489999999864
No 102
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=36.70 E-value=87 Score=18.34 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=23.5
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCe
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFH 63 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~ 63 (78)
+.+++.++++ ..+|.....+.+.|++. |..
T Consensus 58 ~~~~~~ivv~---C~~G~rs~~aa~~L~~~---G~~ 87 (100)
T cd01523 58 LPDDQEVTVI---CAKEGSSQFVAELLAER---GYD 87 (100)
T ss_pred CCCCCeEEEE---cCCCCcHHHHHHHHHHc---Cce
Confidence 3567788886 45888888889999998 886
No 103
>PF01634 HisG: ATP phosphoribosyltransferase; InterPro: IPR013820 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. ATP phosphoribosyltransferase is found in two distinct forms: a long form containing two catalytic domains and a C-terminal regulatory domain, and a short form in which the regulatory domain is missing. The long form is catalytically competent, but in organisms with the short form, a histidyl-tRNA synthetase paralogue, HisZ, is required for enzyme activity []. This entry represents the catalytic region of this enzyme. The structures of the long form enzymes from Escherichia coli (P60757 from SWISSPROT) and Mycobacterium tuberculosis (P60759 from SWISSPROT) have been determined [, ]. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. The two catalytic domains are linked by a two-stranded beta-sheet and togther form a "periplasmic binding protein fold". A crevice between these domains contains the active site. The C-terminal domain is not directly involved in catalysis but appears to be involved the formation of hexamers, induced by the binding of inhibitors such as histidine to the enzyme, thus regulating activity.; GO: 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1VE4_A 2VD3_B 1NH7_A 1NH8_A 1Z7N_G 1Z7M_E 1O64_A 1O63_A 1USY_F 1Q1K_A ....
Probab=36.28 E-value=17 Score=24.91 Aligned_cols=13 Identities=54% Similarity=0.636 Sum_probs=10.3
Q ss_pred EeccccchHHHHH
Q 034952 37 VDDLVATGGTLFA 49 (78)
Q Consensus 37 VDDvitTG~Ti~~ 49 (78)
|=|++.||+|+.+
T Consensus 110 IvDiv~TG~TLr~ 122 (163)
T PF01634_consen 110 IVDIVETGTTLRA 122 (163)
T ss_dssp EEEEESSSHHHHH
T ss_pred EEEeccCcHHHHH
Confidence 3489999999864
No 104
>PRK13583 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=35.14 E-value=18 Score=26.20 Aligned_cols=13 Identities=46% Similarity=0.585 Sum_probs=10.5
Q ss_pred EeccccchHHHHH
Q 034952 37 VDDLVATGGTLFA 49 (78)
Q Consensus 37 VDDvitTG~Ti~~ 49 (78)
|=|++.||+|+.+
T Consensus 175 IvDivsTG~TLr~ 187 (228)
T PRK13583 175 IVDITSTGETLRA 187 (228)
T ss_pred hhhhhchhHHHHH
Confidence 3389999999874
No 105
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=34.66 E-value=25 Score=23.34 Aligned_cols=33 Identities=6% Similarity=-0.108 Sum_probs=21.6
Q ss_pred EEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEE
Q 034952 34 ALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKM 70 (78)
Q Consensus 34 vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~ 70 (78)
++++=|=-+++ .+..+.+.|++. |..+..+..-
T Consensus 110 ~vviTdG~s~d-~~~~~a~~lr~~---gv~i~~vG~~ 142 (165)
T cd01481 110 LVLITGGKSQD-DVERPAVALKRA---GIVPFAIGAR 142 (165)
T ss_pred EEEEeCCCCcc-hHHHHHHHHHHC---CcEEEEEeCC
Confidence 44554544553 367788899999 9887766543
No 106
>PF03192 DUF257: Pyrococcus protein of unknown function, DUF257; InterPro: IPR005489 This family of proteins is of unknown function.; PDB: 2EKD_C.
Probab=32.39 E-value=14 Score=26.22 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=29.3
Q ss_pred CCCceeeeeeeecccccee-E-EEEccccCCCCEEEEEeccccchHHHHHHHHHH
Q 034952 2 VPLGEIISEEYSLEYGKDV-M-EMHVCAVQAGERALIVDDLVATGGTLFAAIRLL 54 (78)
Q Consensus 2 ~~pg~~i~~~y~~~~g~~~-~-~~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l 54 (78)
+.||+++=.+|+......- + .+-+ ...+...-++|||++.|+.....-.+++
T Consensus 8 ~k~GE~VLVEy~S~~~~el~~~~li~-~~~~~~~~vlI~DilDtl~i~~~~l~~~ 61 (210)
T PF03192_consen 8 IKPGETVLVEYSSSSPPELLFYELIK-WAREKGYPVLIDDILDTLHIYKKHLELM 61 (210)
T ss_dssp S-TT-EEEEEE-TTS-THHHHHHHHH----T-SS-BEEEEETTHHHHHHHHHHHT
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHH-HhhhcCCCEEEEEcCCCHHHHHHHHHHc
Confidence 4689999999988544331 1 1111 1123335788999999999988766655
No 107
>COG0040 HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=31.97 E-value=21 Score=26.89 Aligned_cols=14 Identities=50% Similarity=0.596 Sum_probs=10.9
Q ss_pred EEeccccchHHHHH
Q 034952 36 IVDDLVATGGTLFA 49 (78)
Q Consensus 36 IVDDvitTG~Ti~~ 49 (78)
.|=|+++||+|+.+
T Consensus 158 aIvDivsTG~TLka 171 (290)
T COG0040 158 AIVDIVSTGTTLKA 171 (290)
T ss_pred eEEEeecCCHhHHH
Confidence 34489999999864
No 108
>TIGR00070 hisG ATP phosphoribosyltransferase. Members of this family from B. subtilis, Aquifex aeolicus, and Synechocystis PCC6803 (and related taxa) lack the C-terminal third of the sequence. The sole homolog from Archaeoglobus fulgidus lacks the N-terminal 50 residues (as reported) and is otherwise atypical of the rest of the family. This model excludes the C-terminal extension.
Probab=31.64 E-value=24 Score=24.63 Aligned_cols=14 Identities=43% Similarity=0.541 Sum_probs=11.2
Q ss_pred EEeccccchHHHHH
Q 034952 36 IVDDLVATGGTLFA 49 (78)
Q Consensus 36 IVDDvitTG~Ti~~ 49 (78)
.|=|++.||.|+.+
T Consensus 151 ~IvDiv~TG~TL~~ 164 (182)
T TIGR00070 151 AIVDIVSTGTTLRE 164 (182)
T ss_pred EEEEEeCCHHHHHH
Confidence 44479999999876
No 109
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=31.44 E-value=74 Score=18.05 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=28.8
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhch
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRF 57 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~ 57 (78)
+..|++++=|++.-..+-|..++.++++..
T Consensus 43 l~~GD~Il~INg~~v~~~~~~~~~~~l~~~ 72 (81)
T PF00595_consen 43 LKVGDRILEINGQSVRGMSHDEVVQLLKSA 72 (81)
T ss_dssp SSTTEEEEEETTEESTTSBHHHHHHHHHHS
T ss_pred cchhhhhheeCCEeCCCCCHHHHHHHHHCC
Confidence 789999999999999999999999999998
No 110
>PRK09019 translation initiation factor Sui1; Validated
Probab=31.31 E-value=1.5e+02 Score=19.19 Aligned_cols=50 Identities=8% Similarity=0.066 Sum_probs=38.5
Q ss_pred ceeEEEEc-cccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEE
Q 034952 18 KDVMEMHV-CAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERC 67 (78)
Q Consensus 18 ~~~~~~~~-~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~ 67 (78)
++.+.++. ..=..|+.|-+|+-+-.....+...++.|++.|+.|+.+..-
T Consensus 30 ~~~vri~~~r~gRkGK~VTiI~Gl~~~~~dlk~l~K~lKkk~gcGGtvk~~ 80 (108)
T PRK09019 30 DGIVRIQRQTSGRKGKGVCLITGLDLDDAELKKLAAELKKKCGCGGAVKDG 80 (108)
T ss_pred CceEEEEEecCCCCCCeEEEEeCCcCCHHHHHHHHHHHHHHhcCCCeEEcC
Confidence 33444442 222468899999999888999999999999999888887753
No 111
>PRK00939 translation initiation factor Sui1; Reviewed
Probab=31.24 E-value=1.4e+02 Score=18.82 Aligned_cols=48 Identities=10% Similarity=0.099 Sum_probs=37.8
Q ss_pred eeEEEEccccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEE
Q 034952 19 DVMEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLER 66 (78)
Q Consensus 19 ~~~~~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~ 66 (78)
+.+.++...-..|+.|-+|.-+-..+-.+...++.|++.++-|+.+..
T Consensus 24 ~~i~I~~ekr~~gK~VTiI~Gl~~~~~~lk~l~k~lKk~~gcGgsvk~ 71 (99)
T PRK00939 24 QRIKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTVKD 71 (99)
T ss_pred ceEEEEEEecCCCceEEEEeCCCCcchhHHHHHHHHHHHhCCCceEEC
Confidence 444444333357999999999999999999999999999877887754
No 112
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=30.83 E-value=52 Score=24.18 Aligned_cols=27 Identities=37% Similarity=0.571 Sum_probs=22.6
Q ss_pred ccCCCCEEEEEeccccchHHHHHHHHHHhch
Q 034952 27 AVQAGERALIVDDLVATGGTLFAAIRLLGRF 57 (78)
Q Consensus 27 ~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~ 57 (78)
.+..|++|||+ +-|+|+++.++.|...
T Consensus 170 ~l~~Gk~VlI~----AHGNSlRaLiK~L~~i 196 (230)
T COG0588 170 NLKSGKNVLIV----AHGNSLRALIKYLEGI 196 (230)
T ss_pred HHhCCCeEEEE----ecchhHHHHHHHHhCC
Confidence 34689999986 6799999999998764
No 113
>PF15432 Sec-ASP3: Accessory Sec secretory system ASP3
Probab=30.69 E-value=68 Score=21.24 Aligned_cols=14 Identities=36% Similarity=0.658 Sum_probs=12.3
Q ss_pred CCCCceeeeeeeec
Q 034952 1 MVPLGEIISEEYSL 14 (78)
Q Consensus 1 ~~~pg~~i~~~y~~ 14 (78)
+.|||..|..|++.
T Consensus 22 lmpsG~~I~~W~S~ 35 (128)
T PF15432_consen 22 LMPSGTVIHSWYSQ 35 (128)
T ss_pred CCCCCCEeEEEECc
Confidence 46999999999987
No 114
>PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation
Probab=29.08 E-value=1e+02 Score=23.15 Aligned_cols=26 Identities=38% Similarity=0.526 Sum_probs=17.0
Q ss_pred ccCCCCEEEEEeccccchHHHHHHHHHH
Q 034952 27 AVQAGERALIVDDLVATGGTLFAAIRLL 54 (78)
Q Consensus 27 ~~~~g~~vlIVDDvitTG~Ti~~~~~~l 54 (78)
.+.+|.|+|++|| +.|-=..++++.+
T Consensus 198 NV~~g~r~Lv~D~--~~GLv~aav~eRm 223 (299)
T PF04189_consen 198 NVHAGGRVLVVDD--CGGLVVAAVAERM 223 (299)
T ss_pred CCCCCCeEEEEeC--CCChHHHHHHHHh
Confidence 3568999999999 4444444444444
No 115
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=28.87 E-value=1.3e+02 Score=17.67 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=22.9
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCe
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFH 63 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~ 63 (78)
.+++++++..+ +|.....+...|++. |.+
T Consensus 59 ~~~~~ivvyC~---~G~rs~~a~~~L~~~---G~~ 87 (101)
T cd01518 59 LKGKKVLMYCT---GGIRCEKASAYLKER---GFK 87 (101)
T ss_pred cCCCEEEEECC---CchhHHHHHHHHHHh---CCc
Confidence 47788999985 677777788888888 875
No 116
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=28.49 E-value=23 Score=16.86 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=9.9
Q ss_pred CCEEEEEecc-ccchH
Q 034952 31 GERALIVDDL-VATGG 45 (78)
Q Consensus 31 g~~vlIVDDv-itTG~ 45 (78)
..|++++|+- +-.|+
T Consensus 6 H~K~~v~D~~~~~iGs 21 (28)
T smart00155 6 HTKLMIVDDEIAYIGS 21 (28)
T ss_pred EeEEEEEcCCEEEEeC
Confidence 4688999983 44443
No 117
>PRK04333 50S ribosomal protein L14e; Validated
Probab=28.01 E-value=1.5e+02 Score=18.17 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=23.2
Q ss_pred CCCceeeeeeeeccccceeEEEEccccCCCCEEEEEeccccch
Q 034952 2 VPLGEIISEEYSLEYGKDVMEMHVCAVQAGERALIVDDLVATG 44 (78)
Q Consensus 2 ~~pg~~i~~~y~~~~g~~~~~~~~~~~~~g~~vlIVDDvitTG 44 (78)
|.+|..+...+....|.-.+-+ .+..+.++|| ||-..||
T Consensus 4 v~~GrvV~~~~Grd~gk~~vIv---~i~d~~~vlV-dg~~~~~ 42 (84)
T PRK04333 4 IEVGRVCVKTAGREAGRKCVIV---DIIDKNFVLV-TGPSLTG 42 (84)
T ss_pred ccccEEEEEeccCCCCCEEEEE---EEecCCEEEE-ECCCcCC
Confidence 6788888877777666554333 2334566766 5553343
No 118
>cd01644 RT_pepA17 RT_pepA17: Reverse transcriptase (RTs) in retrotransposons. This subfamily represents the RT domain of a multifunctional enzyme. C-terminal to the RT domain is a domain homologous to aspartic proteinases (corresponding to Merops family A17) encoded by retrotransposons and retroviruses. RT catalyzes DNA replication from an RNA template and is responsible for the replication of retroelements.
Probab=27.97 E-value=30 Score=24.24 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=17.5
Q ss_pred EEEEEeccccchHHHHHHHHHHh
Q 034952 33 RALIVDDLVATGGTLFAAIRLLG 55 (78)
Q Consensus 33 ~vlIVDDvitTG~Ti~~~~~~l~ 55 (78)
+..=|||++..+.|..++.+.++
T Consensus 137 ~~~YvDDili~~~s~~e~~~~~~ 159 (213)
T cd01644 137 RNFYVDDILVSTDTLNEAVNVAK 159 (213)
T ss_pred HeeecccceecCCCHHHHHHHHH
Confidence 46789999999998766655443
No 119
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=27.94 E-value=93 Score=26.16 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=28.1
Q ss_pred cccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEE
Q 034952 26 CAVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERC 67 (78)
Q Consensus 26 ~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~ 67 (78)
..+..|.+||++|| +.-+..-+...+++. |+++..+
T Consensus 661 ~~~l~g~~iLlvdd---n~vn~~Va~~~l~~~---g~~~~~~ 696 (786)
T KOG0519|consen 661 SKLLTGPKILLVDD---NPVNRKVATGMLKKL---GAEVTEV 696 (786)
T ss_pred cccccCCceEEEec---ccchHHHHHHHHHHh---CCeeEee
Confidence 34567999999999 455677788888899 9987765
No 120
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=27.29 E-value=36 Score=16.77 Aligned_cols=11 Identities=36% Similarity=0.594 Sum_probs=6.7
Q ss_pred CCEEEEEeccc
Q 034952 31 GERALIVDDLV 41 (78)
Q Consensus 31 g~~vlIVDDvi 41 (78)
.+|++||||-+
T Consensus 6 H~K~~vvD~~~ 16 (28)
T PF00614_consen 6 HQKFVVVDDRV 16 (28)
T ss_dssp ---EEEETTTE
T ss_pred eeEEEEEcCCE
Confidence 57899999864
No 121
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=26.83 E-value=1.1e+02 Score=25.30 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=19.7
Q ss_pred cccCCCCEEEEE-----eccccchHHHHHHH
Q 034952 26 CAVQAGERALIV-----DDLVATGGTLFAAI 51 (78)
Q Consensus 26 ~~~~~g~~vlIV-----DDvitTG~Ti~~~~ 51 (78)
.+....+|||++ ||++.-|+|+....
T Consensus 364 ~~~~~~~rvLv~spHPDDevi~~GGTlarl~ 394 (652)
T PRK02122 364 RALPYPKRVIIFSPHPDDDVISMGGTFRRLV 394 (652)
T ss_pred ccccCCceEEEEEeCCCchHhhhHHHHHHHH
Confidence 344567899998 88999999985443
No 122
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.45 E-value=1.3e+02 Score=16.86 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=25.6
Q ss_pred EEEEEeccccchHHHHHHHHHHhchhcCCCeEEEEEEE
Q 034952 33 RALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERCQKM 70 (78)
Q Consensus 33 ~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~~~~ 70 (78)
+++++.++ |+.-+...++.+++. |..+..-+++
T Consensus 2 ~~ll~~g~--~~~el~~~l~~~r~~---~~~~~~kAvl 34 (58)
T PF12646_consen 2 EFLLFSGF--SGEELDKFLDALRKA---GIPIPLKAVL 34 (58)
T ss_pred CEEEECCC--CHHHHHHHHHHHHHc---CCCcceEEEE
Confidence 56777777 889999999999999 8855444443
No 123
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=25.73 E-value=1.7e+02 Score=21.19 Aligned_cols=30 Identities=33% Similarity=0.407 Sum_probs=24.9
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEE
Q 034952 30 AGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLER 66 (78)
Q Consensus 30 ~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~ 66 (78)
++++++|+ -+|++.++++..|.+. |++.+.
T Consensus 124 ~~k~vlvl----GaGGaarai~~aL~~~---G~~~i~ 153 (282)
T TIGR01809 124 AGFRGLVI----GAGGTSRAAVYALASL---GVTDIT 153 (282)
T ss_pred CCceEEEE----cCcHHHHHHHHHHHHc---CCCeEE
Confidence 57888865 7899999999999999 886543
No 124
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=25.72 E-value=75 Score=21.17 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=17.2
Q ss_pred EEEEEeccccchHHHHHHHHHHhch
Q 034952 33 RALIVDDLVATGGTLFAAIRLLGRF 57 (78)
Q Consensus 33 ~vlIVDDvitTG~Ti~~~~~~l~~~ 57 (78)
.|+|+|| +|-+|...+.+...+.
T Consensus 34 eIiVvD~--s~D~t~~~~~~~~~~~ 56 (232)
T cd06437 34 EIQVLDD--STDETVRLAREIVEEY 56 (232)
T ss_pred EEEEEEC--CCCcHHHHHHHHHHHH
Confidence 5788898 7778888777766543
No 125
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic. This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.
Probab=25.43 E-value=1.8e+02 Score=18.26 Aligned_cols=49 Identities=12% Similarity=0.090 Sum_probs=37.5
Q ss_pred ceeEEEEcccc-CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEE
Q 034952 18 KDVMEMHVCAV-QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLER 66 (78)
Q Consensus 18 ~~~~~~~~~~~-~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~ 66 (78)
++.+.++...- ..++.|-+|.-+-..+-.+.+.++.|++.++-|+++..
T Consensus 23 ~~~i~i~~e~rgr~gK~VTvV~Gl~~~~~~l~~l~k~LKk~~gcGgtvk~ 72 (101)
T TIGR01158 23 DQVVRIQRETRGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTVKD 72 (101)
T ss_pred CceEEEEEEEecCCCCEEEEEeCCcCchhhHHHHHHHHHHHhcCCeeEeC
Confidence 34444443333 46899999999988899999999999998877887754
No 126
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=25.41 E-value=2.1e+02 Score=20.16 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=25.8
Q ss_pred ccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEE
Q 034952 27 AVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERC 67 (78)
Q Consensus 27 ~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~ 67 (78)
.+.+|++|||. -.+|+.-..++++++.. |++++..
T Consensus 135 ~~~~g~~VLI~---ga~g~vG~~aiqlAk~~---G~~Vi~~ 169 (325)
T TIGR02825 135 GVKGGETVMVN---AAAGAVGSVVGQIAKLK---GCKVVGA 169 (325)
T ss_pred CCCCCCEEEEe---CCccHHHHHHHHHHHHc---CCEEEEE
Confidence 35678999884 33577777888999999 9876543
No 127
>cd00001 PTS_IIB_man PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. The active site histidine receives a phosphate group from the IIA subunit and transfers it to the substrate.
Probab=25.33 E-value=1.3e+02 Score=20.03 Aligned_cols=47 Identities=17% Similarity=0.114 Sum_probs=29.5
Q ss_pred eeeeeccccceeEEEEccccCCCCEEEEEeccccchHHHHHHHHHHhch
Q 034952 9 SEEYSLEYGKDVMEMHVCAVQAGERALIVDDLVATGGTLFAAIRLLGRF 57 (78)
Q Consensus 9 ~~~y~~~~g~~~~~~~~~~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~ 57 (78)
+..+.+=||+-...- .....-++|+++||-++.=.....+.++..-.
T Consensus 5 RIDdRLIHGQV~~~W--~~~~~~~~IvVvdD~~A~D~~~k~~l~ma~P~ 51 (151)
T cd00001 5 RIDDRLIHGQVATTW--TKELNANRIIVVNDEVANDELRKTLLKLAAPP 51 (151)
T ss_pred EecccchhhHhhhhh--hcccCCCEEEEEcccccCCHHHHHHHHhhCCC
Confidence 444455566532211 12235679999999999877777777666555
No 128
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=24.51 E-value=2.1e+02 Score=24.44 Aligned_cols=33 Identities=12% Similarity=-0.073 Sum_probs=23.4
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEE
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERC 67 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~ 67 (78)
.+|.+||++||--.. .....+.|++. |+++..+
T Consensus 687 l~g~~vLlvdD~~~~---r~~l~~~L~~~---G~~v~~a 719 (894)
T PRK10618 687 LDGVTVLLDITSEEV---RKIVTRQLENW---GATCITP 719 (894)
T ss_pred CCCCEEEEEeCCHHH---HHHHHHHHHHC---CCEEEEc
Confidence 467899999987654 23344577888 9987654
No 129
>PF14382 ECR1_N: Exosome complex exonuclease RRP4 N-terminal region; PDB: 2NN6_I 3M7N_C 2BA1_A 3M85_C.
Probab=24.16 E-value=26 Score=18.56 Aligned_cols=11 Identities=18% Similarity=0.374 Sum_probs=7.3
Q ss_pred CCCCceeeeee
Q 034952 1 MVPLGEIISEE 11 (78)
Q Consensus 1 ~~~pg~~i~~~ 11 (78)
+|.||+.+...
T Consensus 1 iV~PG~~l~~~ 11 (39)
T PF14382_consen 1 IVVPGDRLGSS 11 (39)
T ss_dssp EE-TT-EEEET
T ss_pred CCCCCCEeecC
Confidence 57899999875
No 130
>PRK06620 hypothetical protein; Validated
Probab=24.13 E-value=1.8e+02 Score=20.14 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=23.6
Q ss_pred CCEEEEEecccc-chHHHHHHHHHHhchhcCCCeEE
Q 034952 31 GERALIVDDLVA-TGGTLFAAIRLLGRFVSFNFHLE 65 (78)
Q Consensus 31 g~~vlIVDDvit-TG~Ti~~~~~~l~~~~~~g~~~~ 65 (78)
...+|+|||+=. ++..+....+.+++. |..++
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~e~---g~~il 117 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIINEK---QKYLL 117 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHHhc---CCEEE
Confidence 446999999931 456788888888888 76443
No 131
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=23.74 E-value=2.7e+02 Score=19.64 Aligned_cols=42 Identities=19% Similarity=0.087 Sum_probs=33.1
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEE----EEEEecCCCC
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERC----QKMVLLLEFS 77 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~----~~~v~~~~~~ 77 (78)
..+.++.|. -.|+-=..+++.|.+. |++++++ .+++|..+|+
T Consensus 29 l~~~~v~I~----G~G~VG~~~a~~L~~~---g~~vv~v~D~~g~~~~~~Gld 74 (227)
T cd01076 29 LAGARVAIQ----GFGNVGSHAARFLHEA---GAKVVAVSDSDGTIYNPDGLD 74 (227)
T ss_pred ccCCEEEEE----CCCHHHHHHHHHHHHC---CCEEEEEECCCCeEECCCCCC
Confidence 467888876 5788889999999999 9999876 4666666654
No 132
>PRK07451 translation initiation factor Sui1; Validated
Probab=23.67 E-value=2.2e+02 Score=18.60 Aligned_cols=38 Identities=11% Similarity=0.087 Sum_probs=33.0
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEE
Q 034952 30 AGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERC 67 (78)
Q Consensus 30 ~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~ 67 (78)
.|+.|-+|.-+-.....+.+.++.|+..|+.|+.+..-
T Consensus 50 ~GK~VTvV~Gl~~~~~dlk~LaK~LK~k~gcGGtvkd~ 87 (115)
T PRK07451 50 KGKTVTVITGFQHKPETLAKLLKQLKTQCGSGGTVKDN 87 (115)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCceEcCC
Confidence 58899999999888899999999999998888876443
No 133
>TIGR00854 pts-sorbose PTS system, mannose/fructose/sorbose family, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIB components of this family of PTS transporters.
Probab=23.66 E-value=1.5e+02 Score=19.79 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=24.4
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHhchhcCCCeE
Q 034952 30 AGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHL 64 (78)
Q Consensus 30 ~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~ 64 (78)
.-++|+++||-++.=.....+.++..-. |.++
T Consensus 25 ~~~~IiVvdD~~A~D~~~k~~lkma~P~---gvk~ 56 (151)
T TIGR00854 25 GANRIIVVNDDVANDEVRQTLMGIVAPT---GFKV 56 (151)
T ss_pred CCCEEEEEcccccCCHHHHHHHHhhCCC---CCEE
Confidence 5679999999999988777777766655 5544
No 134
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=23.36 E-value=2.4e+02 Score=20.01 Aligned_cols=35 Identities=14% Similarity=0.057 Sum_probs=26.1
Q ss_pred ccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEE
Q 034952 27 AVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERC 67 (78)
Q Consensus 27 ~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~ 67 (78)
.+.+|++|+|. -.+|+.-..++++++.. |++++..
T Consensus 148 ~~~~g~~VlI~---Ga~G~vG~~aiqlAk~~---G~~Vi~~ 182 (338)
T cd08295 148 KPKKGETVFVS---AASGAVGQLVGQLAKLK---GCYVVGS 182 (338)
T ss_pred CCCCCCEEEEe---cCccHHHHHHHHHHHHc---CCEEEEE
Confidence 34678899884 44677777889999999 9986543
No 135
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=22.93 E-value=2e+02 Score=17.88 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=23.8
Q ss_pred ccCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCe
Q 034952 27 AVQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFH 63 (78)
Q Consensus 27 ~~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~ 63 (78)
.+.++++|++.++ .+|.....+..+|+.. |.+
T Consensus 82 ~i~~~~~vvvyC~--~~G~rs~~a~~~L~~~---G~~ 113 (128)
T cd01520 82 RLERDPKLLIYCA--RGGMRSQSLAWLLESL---GID 113 (128)
T ss_pred ccCCCCeEEEEeC--CCCccHHHHHHHHHHc---CCc
Confidence 4567889999997 4565666677888888 774
No 136
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=22.51 E-value=2.5e+02 Score=18.85 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=24.8
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEE
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLER 66 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~ 66 (78)
+.+|++++|... +|..-.+++++.+.. |+++..
T Consensus 134 ~~~g~~vlI~g~---~g~~g~~~~~~a~~~---g~~v~~ 166 (320)
T cd05286 134 VKPGDTVLVHAA---AGGVGLLLTQWAKAL---GATVIG 166 (320)
T ss_pred CCCCCEEEEEcC---CchHHHHHHHHHHHc---CCEEEE
Confidence 457889998764 677777788888888 887544
No 137
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=22.44 E-value=2.4e+02 Score=19.83 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=26.0
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEE
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERC 67 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~ 67 (78)
+.+|++|+|... +|..-.+++++++.. |++++..
T Consensus 144 ~~~g~~vlI~g~---~g~vg~~~~~~a~~~---g~~v~~~ 177 (341)
T cd08290 144 LQPGDWVIQNGA---NSAVGQAVIQLAKLL---GIKTINV 177 (341)
T ss_pred cCCCCEEEEccc---hhHHHHHHHHHHHHc---CCeEEEE
Confidence 457888888754 677888889999999 9876544
No 138
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=22.41 E-value=2.6e+02 Score=18.95 Aligned_cols=33 Identities=30% Similarity=0.359 Sum_probs=24.8
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEE
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLER 66 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~ 66 (78)
+.++++++|... +|+.-..++++.+.. |+++..
T Consensus 137 ~~~~~~vlv~g~---~~~~g~~~~~~a~~~---g~~v~~ 169 (325)
T TIGR02824 137 LKAGETVLIHGG---ASGIGTTAIQLAKAF---GARVFT 169 (325)
T ss_pred CCCCCEEEEEcC---cchHHHHHHHHHHHc---CCEEEE
Confidence 457889988764 577777888888888 887543
No 139
>PLN02245 ATP phosphoribosyl transferase
Probab=22.37 E-value=44 Score=26.35 Aligned_cols=13 Identities=46% Similarity=0.580 Sum_probs=10.6
Q ss_pred EeccccchHHHHH
Q 034952 37 VDDLVATGGTLFA 49 (78)
Q Consensus 37 VDDvitTG~Ti~~ 49 (78)
|=|++.||.|+++
T Consensus 240 IvDIVsTGtTLra 252 (403)
T PLN02245 240 ILDLVSSGTTLRE 252 (403)
T ss_pred hcchhccHHHHHH
Confidence 3489999999874
No 140
>TIGR03711 acc_sec_asp3 accessory Sec system protein Asp3. This protein is designated Asp3 because, along with SecY2, SecA2, and other proteins it is part of the accessory Sec system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=22.22 E-value=1e+02 Score=20.76 Aligned_cols=13 Identities=46% Similarity=0.524 Sum_probs=11.8
Q ss_pred CCCceeeeeeeec
Q 034952 2 VPLGEIISEEYSL 14 (78)
Q Consensus 2 ~~pg~~i~~~y~~ 14 (78)
.|||+.|..++++
T Consensus 34 MpsG~~I~~W~S~ 46 (135)
T TIGR03711 34 MPSGETIHTWSSL 46 (135)
T ss_pred CCCCCEEEEEEee
Confidence 6899999999987
No 141
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=22.14 E-value=2.2e+02 Score=20.12 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=24.2
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCe-EEE
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFH-LER 66 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~-~~~ 66 (78)
+.+|++|+|. ..|..-..++++++.. |++ ++.
T Consensus 161 ~~~g~~vlV~----G~G~vG~~~~~~ak~~---G~~~vi~ 193 (339)
T cd08239 161 VSGRDTVLVV----GAGPVGLGALMLARAL---GAEDVIG 193 (339)
T ss_pred CCCCCEEEEE----CCCHHHHHHHHHHHHc---CCCEEEE
Confidence 4578999987 3577777888888888 988 443
No 142
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=21.97 E-value=1.3e+02 Score=19.09 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=26.5
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEE
Q 034952 29 QAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLER 66 (78)
Q Consensus 29 ~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~ 66 (78)
.++++++|+ -+|++..+++..|.+. |++.+.
T Consensus 10 l~~~~vlvi----GaGg~ar~v~~~L~~~---g~~~i~ 40 (135)
T PF01488_consen 10 LKGKRVLVI----GAGGAARAVAAALAAL---GAKEIT 40 (135)
T ss_dssp GTTSEEEEE----SSSHHHHHHHHHHHHT---TSSEEE
T ss_pred cCCCEEEEE----CCHHHHHHHHHHHHHc---CCCEEE
Confidence 478999986 5899999999999999 998554
No 143
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=21.90 E-value=2.7e+02 Score=18.98 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=25.2
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEE
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLER 66 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~ 66 (78)
+.+|++++|... +|..-.+++++.+.. |++++.
T Consensus 140 ~~~g~~vlV~ga---~g~~g~~~~~~a~~~---g~~v~~ 172 (320)
T cd08243 140 LQPGDTLLIRGG---TSSVGLAALKLAKAL---GATVTA 172 (320)
T ss_pred CCCCCEEEEEcC---CChHHHHHHHHHHHc---CCEEEE
Confidence 457889988754 577778888888888 988544
No 144
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=21.85 E-value=1.9e+02 Score=19.76 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=21.9
Q ss_pred CEEEEE--eccccch-HHHHHHHHHHhchhcCCCeEEEEE
Q 034952 32 ERALIV--DDLVATG-GTLFAAIRLLGRFVSFNFHLERCQ 68 (78)
Q Consensus 32 ~~vlIV--DDvitTG-~Ti~~~~~~l~~~~~~g~~~~~~~ 68 (78)
.|++|| ||--..+ .....+.+.|++. |..+..+.
T Consensus 132 ~kvvIllTDg~~~~~~~~~~~~a~~l~~~---GI~i~tVG 168 (193)
T cd01477 132 KKVVIVFASDYNDEGSNDPRPIAARLKST---GIAIITVA 168 (193)
T ss_pred CeEEEEEecCccCCCCCCHHHHHHHHHHC---CCEEEEEE
Confidence 465555 7755544 3456777788888 88765554
No 145
>PRK15029 arginine decarboxylase; Provisional
Probab=21.22 E-value=2e+02 Score=24.48 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=25.0
Q ss_pred EEEEEecccc-----chHHHHHHHHHHhchhcCCCeEEEE
Q 034952 33 RALIVDDLVA-----TGGTLFAAIRLLGRFVSFNFHLERC 67 (78)
Q Consensus 33 ~vlIVDDvit-----TG~Ti~~~~~~l~~~~~~g~~~~~~ 67 (78)
+||||||=.. +|.......+.|++. |.++..+
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~---G~eV~~a 38 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQ---NVTVIKS 38 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHC---CCEEEEE
Confidence 6899999884 677778888888888 8776643
No 146
>cd01576 AcnB_Swivel Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction.
Probab=21.16 E-value=1.7e+02 Score=19.53 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=25.7
Q ss_pred ccCCCCEEEEEeccccchHHHHHHHHHHh
Q 034952 27 AVQAGERALIVDDLVATGGTLFAAIRLLG 55 (78)
Q Consensus 27 ~~~~g~~vlIVDDvitTG~Ti~~~~~~l~ 55 (78)
...++.++++..+-+-+|+|=+.+...|+
T Consensus 46 ~~~~g~~ilvaG~nFG~GSSRe~A~~aL~ 74 (131)
T cd01576 46 LKPKGHPVAYVGDVVGTGSSRKSATNSVL 74 (131)
T ss_pred cccCCCeEEEECCceeeccchHHHHHHHH
Confidence 34567889999999999999999999997
No 147
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=20.59 E-value=3e+02 Score=19.09 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=25.3
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEEE
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLERC 67 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~~ 67 (78)
+.+|+++||. -.+|+.=..++++++.. |++++..
T Consensus 141 ~~~g~~vlI~---ga~g~vG~~aiqlA~~~---G~~vi~~ 174 (329)
T cd08294 141 PKAGETVVVN---GAAGAVGSLVGQIAKIK---GCKVIGC 174 (329)
T ss_pred CCCCCEEEEe---cCccHHHHHHHHHHHHc---CCEEEEE
Confidence 4678899884 33677777888999988 9976543
No 148
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=20.51 E-value=2.9e+02 Score=19.66 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=24.2
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCC-eEEE
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNF-HLER 66 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~-~~~~ 66 (78)
+.+|++++|. ..|+.-..++++++.. |+ .++.
T Consensus 170 ~~~g~~vlI~----g~g~vG~~a~q~a~~~---G~~~v~~ 202 (351)
T cd08233 170 FKPGDTALVL----GAGPIGLLTILALKAA---GASKIIV 202 (351)
T ss_pred CCCCCEEEEE----CCCHHHHHHHHHHHHc---CCCEEEE
Confidence 4578899887 3577888888999998 98 4443
No 149
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=20.45 E-value=3e+02 Score=19.13 Aligned_cols=32 Identities=9% Similarity=0.177 Sum_probs=24.5
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEE
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLER 66 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~ 66 (78)
+.++++++|. .+|..-..++++++.. |++++.
T Consensus 153 ~~~g~~vlV~----g~g~vg~~~~q~a~~~---G~~vi~ 184 (319)
T cd08242 153 ITPGDKVAVL----GDGKLGLLIAQVLALT---GPDVVL 184 (319)
T ss_pred CCCCCEEEEE----CCCHHHHHHHHHHHHc---CCeEEE
Confidence 4578899887 2577778888999999 988543
No 150
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=20.38 E-value=61 Score=22.13 Aligned_cols=34 Identities=9% Similarity=-0.072 Sum_probs=29.5
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEE
Q 034952 30 AGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLER 66 (78)
Q Consensus 30 ~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~ 66 (78)
++..||+..+=+-+|+|=..|...++.+ |.+.+-
T Consensus 47 ~~g~IiVaG~NfG~GSSRE~A~~al~~~---Gi~aVI 80 (163)
T PRK00439 47 KPGDIIVAGKNFGCGSSREHAPIALKAA---GVSAVI 80 (163)
T ss_pred CCceEEEeCCcccCCccHHHHHHHHHHH---CCCeEE
Confidence 3568999999999999999999999999 876543
No 151
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=20.38 E-value=2.3e+02 Score=21.72 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=21.7
Q ss_pred CEEEEEec-cccchHHHHHHHHHHhch
Q 034952 32 ERALIVDD-LVATGGTLFAAIRLLGRF 57 (78)
Q Consensus 32 ~~vlIVDD-vitTG~Ti~~~~~~l~~~ 57 (78)
..+.|||| --++=.++.++++.+++.
T Consensus 325 ~g~~iIDDsYn~nP~s~~aaL~~l~~~ 351 (453)
T PRK10773 325 EGQLLLDDSYNANVGSMTAAAQVLAEM 351 (453)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHhC
Confidence 34799999 566778999999999886
No 152
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=20.22 E-value=2.8e+02 Score=19.90 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=23.4
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHhchhcCCCeEEE
Q 034952 28 VQAGERALIVDDLVATGGTLFAAIRLLGRFVSFNFHLER 66 (78)
Q Consensus 28 ~~~g~~vlIVDDvitTG~Ti~~~~~~l~~~~~~g~~~~~ 66 (78)
+.+|++|+|.- .|+.-..++++++.. |++++.
T Consensus 163 ~~~g~~VlV~G----~g~iG~~a~~~a~~~---G~~vi~ 194 (329)
T TIGR02822 163 LPPGGRLGLYG----FGGSAHLTAQVALAQ---GATVHV 194 (329)
T ss_pred CCCCCEEEEEc----CCHHHHHHHHHHHHC---CCeEEE
Confidence 45789999874 255556778888888 987554
No 153
>PRK11425 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=20.10 E-value=1.9e+02 Score=19.49 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=22.1
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHhch
Q 034952 30 AGERALIVDDLVATGGTLFAAIRLLGRF 57 (78)
Q Consensus 30 ~g~~vlIVDDvitTG~Ti~~~~~~l~~~ 57 (78)
.-.+|+++||-++.=.-...+.++..-.
T Consensus 27 ~~~~IvVvdD~~A~D~~~k~~l~ma~P~ 54 (157)
T PRK11425 27 GANLVLVANDEVAEDPVQQNLMEMVLAE 54 (157)
T ss_pred CCCEEEEEcchhcCCHHHHHHHHhhCCC
Confidence 4579999999999988777777766655
No 154
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=20.05 E-value=1.9e+02 Score=21.79 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=22.7
Q ss_pred CCEEEEEec-cccchHHHHHHHHHHhch
Q 034952 31 GERALIVDD-LVATGGTLFAAIRLLGRF 57 (78)
Q Consensus 31 g~~vlIVDD-vitTG~Ti~~~~~~l~~~ 57 (78)
.+.+.+||| --++=.++.++++.+++.
T Consensus 295 ~~~~~vidDsya~np~s~~~al~~l~~~ 322 (417)
T TIGR01143 295 KNGLTLIDDTYNANPDSMRAALDALARF 322 (417)
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHhC
Confidence 345788888 778999999999999877
Done!