BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034955
(78 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CJK|A Chain A, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
Length = 68
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFWEEE 60
M+C GC AV RVL K+ GV+ +DIDL +KV ++ D +L T+ KTGK ++ E
Sbjct: 9 MTCGGCAEAVSRVLNKLGGVK-YDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYLGLE 67
>pdb|1FE4|A Chain A, Crystal Structure Of Mercury-Hah1
pdb|1FE4|B Chain B, Crystal Structure Of Mercury-Hah1
pdb|1FEE|A Chain A, Crystal Structure Of Copper-Hah1
pdb|1FEE|B Chain B, Crystal Structure Of Copper-Hah1
pdb|1FE0|A Chain A, Crystal Structure Of Cadmium-Hah1
pdb|1FE0|B Chain B, Crystal Structure Of Cadmium-Hah1
pdb|1TL4|A Chain A, Solution Structure Of Cu(i) Hah1
pdb|1TL5|A Chain A, Solution Structure Of Apohah1
pdb|2K1R|B Chain B, The Solution Nmr Structure Of The Complex Between Mnk1
And Hah1 Mediated By Cu(I)
pdb|3IWL|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Monomer)
pdb|3IWX|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Dimer)
pdb|3IWX|B Chain B, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Dimer)
Length = 68
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFWEEE 60
M+C GC AV RVL K+ GV+ +DIDL +KV ++ D +L T+ KTGK ++ E
Sbjct: 10 MTCGGCAEAVSRVLNKLGGVK-YDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYLGLE 68
>pdb|1FD8|A Chain A, Solution Structure Of The Cu(I) Form Of The Yeast
Metallochaperone, Atx1
Length = 73
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 1 MSCEGCVGAVKRVLGKMD-GVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGK 52
M+C GC GAV +VL K++ V DI L++Q V V + D +L+ + KTGK
Sbjct: 13 MTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGK 65
>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
Length = 249
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGK 52
M CE CV +K L + G+ + + D+++Q ++V+ +V P ++ T+ GK
Sbjct: 15 MHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGK 66
>pdb|1CC7|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
pdb|1CC8|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
pdb|2GGP|A Chain A, Solution Structure Of The Atx1-Cu(I)-Ccc2a Complex
pdb|1FES|A Chain A, Solution Structure Of The Apo Form Of The Yeast
Metallochaperone, Atx1
pdb|3K7R|A Chain A, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|B Chain B, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|C Chain C, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|D Chain D, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|E Chain E, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|F Chain F, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|G Chain G, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|H Chain H, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|I Chain I, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|J Chain J, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|K Chain K, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|L Chain L, Crystal Structure Of [tm][cuatx1]3
Length = 73
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 1 MSCEGCVGAVKRVLGKMD-GVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGK 52
M+C GC GAV +VL K++ V DI L++Q V V + D +L+ + KTGK
Sbjct: 13 MTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGK 65
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKK 53
M+C CV AV + L K+ GVE ++ L++ + V+G P A++Q V + G K
Sbjct: 9 MTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYK 61
>pdb|1QUP|A Chain A, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
pdb|1QUP|B Chain B, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
Length = 222
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 3 CEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGK 52
CE CV +K L + G+ + + D+++Q +V+ +V P ++ T+ GK
Sbjct: 16 CENCVNDIKACLKNVPGINSLNFDIEQQIXSVESSVAPSTIINTLRNCGK 65
>pdb|2QIF|A Chain A, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|2QIF|B Chain B, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|3I9Z|A Chain A, Crystal Structure Of A Metallochaperone With A
Trinuclear Cu(I) Cluster
Length = 69
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTV 34
MSC+ CV AV+ +G++DGV ++L+ KV V
Sbjct: 11 MSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDV 44
>pdb|1P8G|A Chain A, The Solution Structure Of Apo Copz From Bacillus
Subtilis
pdb|1K0V|A Chain A, Copper Trafficking: The Solution Structure Of Bacillus
Subtilis Copz
Length = 73
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTV 34
MSC+ CV AV+ +G++DGV ++L+ KV V
Sbjct: 11 MSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDV 44
>pdb|2CRL|A Chain A, The Apo Form Of Hma Domain Of Copper Chaperone For
Superoxide Dismutase
Length = 98
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAF 56
M+C+ CV AV++ L + GV+ ++ L++Q V V + V + TG++
Sbjct: 27 MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVL 82
>pdb|1KVI|A Chain A, Solution Structure Of The Reduced Form Of The First
Heavy Metal Binding Motif Of The Menkes Protein
pdb|1KVJ|A Chain A, Solution Structure Of The Cu(I) Bound Form Of The First
Heavy Metal Binding Motif Of The Menkes Protein
Length = 79
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTV 34
M+C CV +++ +GK++GV + L+E+ T+
Sbjct: 17 MTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATI 50
>pdb|3CJK|B Chain B, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
Length = 75
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTV 34
M+C CV +++ +GK++GV + L+E+ T+
Sbjct: 11 MTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATI 44
>pdb|2K1R|A Chain A, The Solution Nmr Structure Of The Complex Between Mnk1
And Hah1 Mediated By Cu(I)
Length = 73
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTV 34
M+C CV +++ +GK++GV + L+E+ T+
Sbjct: 13 MTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATI 46
>pdb|2GCF|A Chain A, Solution Structure Of The N-Terminal Domain Of The
Coppper(I) Atpase Pacs In Its Apo Form
Length = 73
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDID--LKEQKVTVKGNVQPDAVLQTVSKTGKKTAFWE 58
M C C +++R + K+ GV++ ++ L++ V+ G P + V + G +
Sbjct: 12 MRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARVLK 71
Query: 59 EE 60
++
Sbjct: 72 QQ 73
>pdb|2XMW|A Chain A, Pacs, N-Terminal Domain, From Synechocystis Pcc6803
Length = 71
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDID--LKEQKVTVKGNVQPDAVLQTVSKTG 51
M C C +++R + K+ GV++ ++ L++ V+ G P + V + G
Sbjct: 12 MRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAG 64
>pdb|2ROP|A Chain A, Solution Structure Of Domains 3 And 4 Of Human Atp7b
Length = 202
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGN 37
M+C CV +++ ++ +++GV+ + L E TV N
Sbjct: 131 MTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYN 167
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK 35
M C+ CV ++ +G++ GV++ + L+ + VK
Sbjct: 29 MHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVK 63
>pdb|1Y3K|A Chain A, Solution Structure Of The Apo Form Of The Fifth Domain
Of Menkes Protein
pdb|1Y3J|A Chain A, Solution Structure Of The Copper(I) Form Of The Fifth
Domain Of Menkes Protein
Length = 77
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGN---VQPDAVLQTVSKTG 51
M+C CV ++R L + +G+ + + L K V+ N +QP + + + + G
Sbjct: 12 MTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELG 65
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDID--LKEQKVTVKGNVQPDAVLQTVSKTGKK 53
M C C +++R + K+ GV++ ++ L++ V+ G P + V + G
Sbjct: 11 MDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYH 65
>pdb|1Q8L|A Chain A, Second Metal Binding Domain Of The Menkes Atpase
Length = 84
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTV 34
M+C C ++ +GK+ GV+ + L Q+ T+
Sbjct: 18 MTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATI 51
>pdb|2EW9|A Chain A, Solution Structure Of Apowln5-6
Length = 149
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGN---VQPDAVLQTVSKTGKKTAFW 57
M+C CV ++R L K GV + + L K +K + +QP + Q + G + A
Sbjct: 13 MTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEAAVM 72
Query: 58 EE 59
E+
Sbjct: 73 ED 74
>pdb|4A46|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKK 53
++CE C AV + + D T +DL +KVT+ + + + ++ G +
Sbjct: 9 IACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHE 61
>pdb|1SB6|A Chain A, Solution Structure Of A Cyanobacterial Copper
Metallochaperone, Scatx1
pdb|2XMT|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMT|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMU|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMU|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMJ|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMJ|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMK|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
pdb|2XMK|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
Length = 64
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKK 53
++CE C AV + + D T +DL +KVT+ + + + ++ G +
Sbjct: 10 IACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHE 62
>pdb|2XMV|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|C Chain C, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|D Chain D, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|E Chain E, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|F Chain F, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMM|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
pdb|2XMM|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
Length = 64
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTV 34
++CE C AV + + D T +DL +KVT+
Sbjct: 10 IACEACAEAVTKAVQNEDAQATVQVDLTSKKVTI 43
>pdb|1S6O|A Chain A, Solution Structure And Backbone Dynamics Of The Apo-Form
Of The Second Metal-Binding Domain Of The Menkes
Protein Atp7a
pdb|1S6U|A Chain A, Solution Structure And Backbone Dynamics Of The Cu(I)
Form Of The Second Metal-Binding Domain Of The Menkes
Protein Atp7a
Length = 76
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAV 43
M+C C ++ +GK+ GV+ + L Q+ T+ QP +
Sbjct: 12 MTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATI--VYQPHLI 52
>pdb|2RGO|A Chain A, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
pdb|2RGO|B Chain B, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
Length = 607
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 4 EGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKK--TAFWEEE 60
EG + ++++L + G+ET +ID K+ +++ GN P + +TV++ K+ A EEE
Sbjct: 438 EGALRLIRQLLKEEYGIETKEIDSKKYQIS-GGNFDPTKLEETVTELAKEGVAAGLEEE 495
>pdb|2RGH|A Chain A, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
Length = 571
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 4 EGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKK--TAFWEEE 60
EG + ++++L + G+ET +ID K+ +++ GN P + +TV++ K+ A EEE
Sbjct: 402 EGALRLIRQLLKEEYGIETKEIDSKKYQIS-GGNFDPTKLEETVTELAKEGVAAGLEEE 459
>pdb|2RML|A Chain A, Solution Structure Of The N-Terminal Soluble Domains Of
Bacillus Subtilis Copa
Length = 147
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGN 37
M+C C +++ L K++GV ++ + VTV+ N
Sbjct: 83 MTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYN 119
>pdb|1P6T|A Chain A, Structure Characterization Of The Water Soluble Region Of
P- Type Atpase Copa From Bacillus Subtilis
Length = 151
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGN 37
M+C C +++ L K++GV ++ + VTV+ N
Sbjct: 83 MTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYN 119
>pdb|2KT2|A Chain A, Structure Of Nmera, The N-Terminal Hma Domain Of Tn501
Mercuric Reductase
pdb|2KT3|A Chain A, Structure Of Hg-Nmera, Hg(Ii) Complex Of The N-Terminal
Domain Of Tn501 Mercuric Reductase
Length = 69
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKE---QKVTVKGNVQPDAVLQTVSKTGKKTAFW 57
M+C+ C VK L K+ GV++ + + Q V G PDA+ V+ G K
Sbjct: 9 MTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGT-SPDALTAAVAGLGYKATLA 67
Query: 58 E 58
+
Sbjct: 68 D 68
>pdb|4A47|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTV 34
M C C AV + + D T +DL +KVT+
Sbjct: 9 MDCTSCAEAVTKAVQNEDAQATVQVDLTSKKVTI 42
>pdb|2VOY|A Chain A, Cryoem Model Of Copa, The Copper Transporting Atpase
From Archaeoglobus Fulgidus
pdb|1JWW|A Chain A, Nmr Characterization Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis
Length = 80
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGN 37
M+C C +++ L K++GV ++ + VTV+ N
Sbjct: 12 MTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYN 48
>pdb|1KQK|A Chain A, Solution Structure Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis In The Cu(I)loaded State
Length = 80
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGN 37
M+C C +++ L K++GV ++ + VTV+ N
Sbjct: 12 MTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYN 48
>pdb|1CPZ|A Chain A, Copper Chaperone Of Enterococcus Hirae (Apo-Form)
Length = 68
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVSKTGKK 53
MSC CV ++ +G++ GV+ + LK++K VK NVQ + Q +++ G +
Sbjct: 9 MSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQ 64
>pdb|2L3M|A Chain A, Solution Structure Of The Putative Copper-Ion-Binding
Protein From Bacillus Anthracis Str. Ames
Length = 71
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTV 34
MSC CV A++ + +++GVE + L E V V
Sbjct: 14 MSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEV 47
>pdb|1AFI|A Chain A, Structure Of The Reduced Form Of Merp, The Periplasmic
Protein From The Bacterial Mercury Detoxification
System, Nmr, 20 Structures
pdb|1AFJ|A Chain A, Structure Of The Mercury-Bound Form Of Merp, The
Periplasmic Protein From The Bacterial Mercury
Detoxification System, Nmr, 20 Structures
pdb|2HQI|A Chain A, Nmr Solution Structure Of The Oxidized Form Of Merp, 14
Structures
Length = 72
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTV 34
M+C C VK+ L K++GV D+ ++++ V
Sbjct: 12 MTCAACPITVKKALSKVEGVSKVDVGFEKREAVV 45
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTV 34
M+C C VK+ + K++GV D+ + ++ V
Sbjct: 12 MTCSACPITVKKAISKVEGVSKVDVTFETRQAVV 45
>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
Length = 525
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 9 AVKRVLGKMDGVETFD---IDLKEQKVTVKGNVQPDAVLQTVSKTGK 52
A ++++G++ VE FD + L++ K +G + PD + S TGK
Sbjct: 306 AKRKIIGRV-FVEVFDEEALKLEDVKWLAQGTIYPDVIESAASATGK 351
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK 35
M+C CV +++ +G ++GVE ++L + ++
Sbjct: 11 MTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIR 45
>pdb|2AJ0|A Chain A, Solution Structure Of Apocada
pdb|2AJ1|A Chain A, Solution Structure Of Apocada
Length = 71
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTG 51
+SC C +R + +++GV ++ K+TV G +A +Q V + G
Sbjct: 12 LSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTG----EASIQQVEQAG 58
>pdb|1AW0|A Chain A, Fourth Metal-Binding Domain Of The Menkes Copper-
Transporting Atpase, Nmr, 20 Structures
pdb|2AW0|A Chain A, Fourth Metal-Binding Domain Of The Menkes Copper-
Transporting Atpase, Nmr, 20 Structures
Length = 72
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 1 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK 35
M+C CV +++ V+ K GV++ + L TV+
Sbjct: 12 MTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVE 46
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis
Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis
Hb8
Length = 211
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 27 LKEQKVTVKGNVQPDAVLQTVSKTGKKTAFWEEEKPAPAESDSKPTEAVAA 77
+ E++ +KG + P +++ + G T +W P P + +P+EA A
Sbjct: 23 IAEEERALKGLLPPG---ESLLEVGAGTGYWLRRLPYPQKVGVEPSEAXLA 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.308 0.125 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,247,963
Number of Sequences: 62578
Number of extensions: 71899
Number of successful extensions: 193
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 46
length of query: 78
length of database: 14,973,337
effective HSP length: 47
effective length of query: 31
effective length of database: 12,032,171
effective search space: 372997301
effective search space used: 372997301
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 45 (21.9 bits)