BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034961
         (78 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
          Domain From Homo Sapiens
          Length = 71

 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 11 SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSN-GWDFTEIHNAYETLSDPKARAVYD 69
          + Y+VL V+P A   E+K  YR LA  YH D + N G  F +I  AYE LSD K R +YD
Sbjct: 7  TYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYD 66


>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
          Length = 73

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-FTEIHNAYETLSDPKARAVYDM 70
          Y+VL V+P A  +E+K  YR +A  +H D + +G + F +I  AYE LSD K R +YD 
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQ 69


>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
          Saccharomyces Cerevisiae
          Length = 92

 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 12 LYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-FTEIHNAYETLSDPKARAVYDM 70
          LY++L V P+A   E+K  YR  A  YH D  +   + F EI  A+E L+DP+ R +YD 
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQ 69


>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
          Escherichia Coli N-Terminal Fragment (Residues 2-108)
          Of The Molecular Chaperone Dnaj, 20 Structures
          Length = 107

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPKARAVY 68
          YE+L V  TA   EI+  Y+ LA  YH D +    +    F EI  AYE L+D + RA Y
Sbjct: 6  YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65

Query: 69 DM 70
          D 
Sbjct: 66 DQ 67


>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
          N-Terminal Fragment (Residues 1-78) Of The Molecular
          Chaperone Dnaj, Nmr, 20 Structures
          Length = 77

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPKARAVY 68
          YE+L V  TA   EI+  Y+ LA  YH D +    +    F EI  AYE L+D + RA Y
Sbjct: 6  YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65

Query: 69 DM 70
          D 
Sbjct: 66 DQ 67


>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
          Escherichia Coli Cbpa
          Length = 73

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSN---GWDFTEIHNAYETLSDPKARAVYD 69
          Y ++ V+PT  +  IKT YR LA+ YH D+S        F E+  A+E LSD + RA YD
Sbjct: 8  YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYD 67

Query: 70 M 70
           
Sbjct: 68 Q 68


>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
          N-Terminal Fragment (Residues 1-104) Of The Molecular
          Chaperone Dnaj, Nmr, 20 Structures
          Length = 103

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPKARAVY 68
          YE+L V  TA   EI+  Y+ LA  YH D +    +    F EI  AYE L+D + RA Y
Sbjct: 6  YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65

Query: 69 DM 70
          D 
Sbjct: 66 DQ 67


>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
          Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
          Resolution.
 pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
          Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
          Resolution
          Length = 329

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNG---WDFTEIHNAYETLSDPKARAVYD 69
          Y +L V+PT  +  IKT YR LA+ YH D+S        F ++  A+E L D + RA YD
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYD 90


>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
          C Menber 5
          Length = 109

 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 9  GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPKA 64
          G SLY VL ++  A   +IK  YR LA  YH D + +  +    F EI+NA+  L+D   
Sbjct: 16 GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATK 75

Query: 65 RAVYD 69
          R +YD
Sbjct: 76 RNIYD 80


>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
          Human Tid1 Protein
          Length = 79

 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 7  GMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNG----WDFTEIHNAYETLSDP 62
          G  G  Y++L V   A   EIK  Y  LAK YH D + +       F+++  AYE LSD 
Sbjct: 4  GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDE 63

Query: 63 KARAVYD 69
            R  YD
Sbjct: 64 VKRKQYD 70


>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
          Subfamily B Member 8
          Length = 92

 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-----FTEIHNAYETLSDPKARAV 67
          YEVL V+ +A   +IK  YR LA  +H D + +  +     F  +  AYE LSD K R++
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71

Query: 68 YDMSLVSTRR 77
          YD +   + R
Sbjct: 72 YDRAGCDSWR 81


>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
          Length = 77

 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 9  GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSN-GWD--FTEIHNAYETLSDPKAR 65
          G   Y+ L +   A   EIK  YR  A  YH D +   G +  F EI  AY+ LSDP+ R
Sbjct: 2  GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61

Query: 66 AVYD 69
           ++D
Sbjct: 62 EIFD 65


>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
          Length = 99

 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 11 SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFT-----EIHNAYETLSDPKAR 65
          S YE+L V  +A   +IK  YR  A  +H D + +  +F      E+  AYE LSD   R
Sbjct: 3  SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62

Query: 66 AVYD 69
           +YD
Sbjct: 63 EIYD 66


>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
          Protein Hcg3, A Hypothetical Protein Tmp_locus_21
          Length = 82

 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-----FTEIHNAYETLSDPKARAV 67
          YEVL V   A    IK  YR LA  +H D +    +     F ++  AYE LSD K R +
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71

Query: 68 YD 69
          YD
Sbjct: 72 YD 73


>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
          Protein, Mouse Hypothetical Mkiaa0962
          Length = 88

 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSN-GWD--FTEIHNAYETLSDPKARAVYD 69
          Y VL V  TA  ++IK  Y+ LA+ +H D + + G +  F +I  AYE LS+ + R  YD
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 79


>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
          B Menber 9
          Length = 88

 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSN---GWDFTEIHNAYETLSDPKARAVYD 69
          Y++L V  +A   +IK  +  LA  YH D + +      F EI  AYETLSD   R  YD
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69


>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
          B Menber 12
          Length = 78

 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 7  GMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLS---SNGWDFTEIHNAYETLSDPK 63
          G  G  YE+L V   A   ++K  YR LA  +H D +        F  I  AY  LS+P+
Sbjct: 4  GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPE 63

Query: 64 ARAVYDM 70
           R  YD 
Sbjct: 64 KRKQYDQ 70


>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
 pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
          Length = 210

 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 11 SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNG----WDFTEIHNAYETLSDPKARA 66
          + Y +L V  TA   EI+  ++ LA   H D + N      DF +I+ AYE L D   R 
Sbjct: 3  NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62

Query: 67 VYD 69
           YD
Sbjct: 63 KYD 65


>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
          Williams- Beuren Syndrome Chromosome Region 18 Protein
          Length = 99

 Score = 38.5 bits (88), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 11 SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPKARA 66
          +LY++L V  TA  ++IK  Y     +YH D +S   +    FT I  AY  L     R 
Sbjct: 18 ALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR 77

Query: 67 VYDMSLVS 74
           YD  L+S
Sbjct: 78 KYDRGLLS 85


>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
          Length = 780

 Score = 38.5 bits (88), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 11 SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNG----WDFTEIHNAYETLSDPKARA 66
          + Y +L V  TA   EI+  ++ LA   H D + N      DF +I+ AYE L D   R 
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81

Query: 67 VYD 69
           YD
Sbjct: 82 KYD 84


>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
          Protein
          Length = 94

 Score = 35.0 bits (79), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNG----------WDFTEIHNAYETLSDP 62
          Y +L  +P+A +S++K  Y+ L  +YH D  S              F EI  A++ L + 
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78

Query: 63 KARAVYDM 70
          + +  YD+
Sbjct: 79 ETKKKYDL 86


>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
          Length = 155

 Score = 35.0 bits (79), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 10/69 (14%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNG----------WDFTEIHNAYETLSDP 62
          Y +L  +P+A IS++K  Y+ L  +YH D  S              F EI  A++ L + 
Sbjct: 13 YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 72

Query: 63 KARAVYDMS 71
          + +  YD+ 
Sbjct: 73 ETKREYDLQ 81


>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
          Length = 450

 Score = 34.7 bits (78), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 13  YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSN-------GWDFTEIHNAYETLSDPKAR 65
           Y++L V+  A   EI   YR LA  +H D   N          F +I  A E LSDP+ R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEXR 444

Query: 66  AVYD 69
             +D
Sbjct: 445 KKFD 448


>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
 pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
 pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
          Length = 450

 Score = 34.3 bits (77), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 13  YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSN-------GWDFTEIHNAYETLSDPKAR 65
           Y++L V+  A   EI   YR LA  +H D   N          F +I  A E LSDP+ R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444

Query: 66  AVYD 69
             +D
Sbjct: 445 KKFD 448


>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
          Precursor From C.Elegans
          Length = 109

 Score = 32.7 bits (73), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 9/79 (11%)

Query: 2  PLMAPGMGGSLYEVLRVEPTAMISE-IKTVYRSLAKVYHHDLSSNGWD-------FTEIH 53
          P +  G+  + Y+VL V       + +   YR+LA+ +H D   N  +       F  I 
Sbjct: 8  PELYCGLE-NCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIA 66

Query: 54 NAYETLSDPKARAVYDMSL 72
           AYETL D +A+  YD  L
Sbjct: 67 TAYETLKDDEAKTNYDYYL 85


>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
          Clone
 pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
          Clone
          Length = 181

 Score = 31.2 bits (69), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 25 SEIKTVYRSLAKVYHHDLSSNGWDFTE-IHNAYETLSDPKARAVYDMSLV 73
          S ++  YR L   +H D++  G + +  ++ AY TL DP  R+ Y + L+
Sbjct: 33 SRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKLL 82


>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
 pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
          Length = 175

 Score = 31.2 bits (69), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 25 SEIKTVYRSLAKVYHHDLSSNGWDFTE-IHNAYETLSDPKARAVYDMSLV 73
          S ++  YR L   +H D++  G + +  ++ AY TL DP  R+ Y + L+
Sbjct: 25 SRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKLL 74


>pdb|1YDW|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis
          Thaliana At4g09670
 pdb|1YDW|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis
          Thaliana At4g09670
 pdb|2Q4E|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
          Gene Product From Arabidopsis Thaliana At4g09670
 pdb|2Q4E|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
          Gene Product From Arabidopsis Thaliana At4g09670
          Length = 362

 Score = 30.4 bits (67), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 16 LRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYET-LSDPKARAVY 68
          + + P A IS + +  RSL K      ++N  + T+IH +YE+ L DP+  A+Y
Sbjct: 25 IHLAPNATISGVAS--RSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALY 76


>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
 pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
 pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
 pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
          Length = 174

 Score = 30.0 bits (66), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 9/57 (15%)

Query: 25 SEIKTVYRSLAKVYHHDLSSNGWD---------FTEIHNAYETLSDPKARAVYDMSL 72
          S + + +R+L K +H D  +   +           +I++AY+TL DP  RA Y +SL
Sbjct: 21 SLLSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDAYQTLKDPLRRAEYLLSL 77


>pdb|1GZJ|A Chain A, Structure Of Thermoascus Aurantiacus Family 5
           Endoglucanase
 pdb|1GZJ|B Chain B, Structure Of Thermoascus Aurantiacus Family 5
           Endoglucanase
          Length = 304

 Score = 26.2 bits (56), Expect = 4.6,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 18/27 (66%)

Query: 44  SNGWDFTEIHNAYETLSDPKARAVYDM 70
           +  W +T +++  ++L+DP  + +Y+M
Sbjct: 170 TGAWTWTNVNDNMKSLTDPSDKIIYEM 196


>pdb|1H1N|A Chain A, Atomic Resolution Structure Of The Major Endoglucanase
           From Thermoascus Aurantiacus
 pdb|1H1N|B Chain B, Atomic Resolution Structure Of The Major Endoglucanase
           From Thermoascus Aurantiacus
          Length = 305

 Score = 26.2 bits (56), Expect = 4.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 18/27 (66%)

Query: 44  SNGWDFTEIHNAYETLSDPKARAVYDM 70
           +  W +T +++  ++L+DP  + +Y+M
Sbjct: 171 TGAWTWTNVNDNMKSLTDPSDKIIYEM 197


>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
          Ras- Associated Protein Rap1
          Length = 90

 Score = 25.8 bits (55), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHD 41
          +++L V+P A   E+   YR LA + H D
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPD 58


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.130    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,278,283
Number of Sequences: 62578
Number of extensions: 66680
Number of successful extensions: 247
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 32
length of query: 78
length of database: 14,973,337
effective HSP length: 47
effective length of query: 31
effective length of database: 12,032,171
effective search space: 372997301
effective search space used: 372997301
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)