Query 034961
Match_columns 78
No_of_seqs 141 out of 1047
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 08:04:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034961.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034961hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 4.5E-27 9.6E-32 159.0 6.9 67 8-74 2-72 (371)
2 KOG0713 Molecular chaperone (D 99.9 1.5E-25 3.3E-30 149.2 7.3 70 6-75 12-85 (336)
3 PRK14288 chaperone protein Dna 99.9 9.6E-24 2.1E-28 143.5 7.3 64 9-72 2-69 (369)
4 PTZ00037 DnaJ_C chaperone prot 99.9 3.4E-23 7.3E-28 142.8 7.0 65 9-73 27-91 (421)
5 PRK14296 chaperone protein Dna 99.9 7E-23 1.5E-27 139.4 7.2 64 9-72 3-69 (372)
6 PRK14279 chaperone protein Dna 99.9 9.1E-23 2E-27 139.6 7.1 65 8-72 7-75 (392)
7 KOG0712 Molecular chaperone (D 99.9 1.5E-22 3.3E-27 135.6 7.3 67 9-75 3-70 (337)
8 PRK14286 chaperone protein Dna 99.9 4.1E-22 8.8E-27 135.7 7.2 64 9-72 3-70 (372)
9 PF00226 DnaJ: DnaJ domain; I 99.9 4.8E-22 1E-26 105.5 5.4 59 11-69 1-64 (64)
10 PRK14287 chaperone protein Dna 99.9 1.1E-21 2.3E-26 133.6 7.3 64 9-72 3-69 (371)
11 PRK14295 chaperone protein Dna 99.9 1.1E-21 2.5E-26 134.1 7.0 63 8-70 7-73 (389)
12 PRK14282 chaperone protein Dna 99.9 1.2E-21 2.7E-26 133.2 7.1 64 9-72 3-71 (369)
13 PRK14285 chaperone protein Dna 99.9 1.3E-21 2.8E-26 133.0 7.0 64 9-72 2-69 (365)
14 PRK14299 chaperone protein Dna 99.9 1.8E-21 3.9E-26 129.0 7.3 65 9-73 3-70 (291)
15 PRK14276 chaperone protein Dna 99.9 1.8E-21 4E-26 132.8 7.1 64 9-72 3-69 (380)
16 PRK14278 chaperone protein Dna 99.9 1.7E-21 3.6E-26 132.9 6.8 64 9-72 2-68 (378)
17 PRK14291 chaperone protein Dna 99.8 2.1E-21 4.6E-26 132.5 7.1 65 9-73 2-69 (382)
18 PRK14298 chaperone protein Dna 99.8 1.9E-21 4.2E-26 132.6 6.5 64 9-72 4-70 (377)
19 PRK14283 chaperone protein Dna 99.8 2.6E-21 5.6E-26 131.9 7.0 64 9-72 4-70 (378)
20 PRK14277 chaperone protein Dna 99.8 3.3E-21 7.2E-26 131.7 7.3 64 9-72 4-71 (386)
21 PRK14294 chaperone protein Dna 99.8 3.9E-21 8.4E-26 130.6 7.4 64 9-72 3-70 (366)
22 PRK14280 chaperone protein Dna 99.8 4E-21 8.7E-26 131.0 7.2 63 10-72 4-69 (376)
23 PRK14301 chaperone protein Dna 99.8 3.1E-21 6.8E-26 131.4 6.4 64 9-72 3-70 (373)
24 PRK14297 chaperone protein Dna 99.8 3.7E-21 8.1E-26 131.2 6.2 64 9-72 3-70 (380)
25 PRK14284 chaperone protein Dna 99.8 6.8E-21 1.5E-25 130.4 7.0 63 10-72 1-67 (391)
26 PRK14281 chaperone protein Dna 99.8 6E-21 1.3E-25 130.9 6.6 65 9-73 2-70 (397)
27 KOG0715 Molecular chaperone (D 99.8 1.1E-20 2.3E-25 125.3 7.4 65 10-74 43-110 (288)
28 PRK10767 chaperone protein Dna 99.8 8.6E-21 1.9E-25 129.1 7.1 64 9-72 3-70 (371)
29 KOG0717 Molecular chaperone (D 99.8 8.7E-21 1.9E-25 130.6 7.1 70 5-74 3-77 (508)
30 KOG0691 Molecular chaperone (D 99.8 1.3E-20 2.7E-25 125.0 7.2 68 9-76 4-75 (296)
31 PRK14300 chaperone protein Dna 99.8 1.5E-20 3.2E-25 128.1 6.8 64 9-72 2-68 (372)
32 KOG0716 Molecular chaperone (D 99.8 2.1E-20 4.6E-25 121.8 6.4 65 9-73 30-98 (279)
33 TIGR02349 DnaJ_bact chaperone 99.8 2.8E-20 6.1E-25 125.8 6.7 62 11-72 1-65 (354)
34 PRK14293 chaperone protein Dna 99.8 3.8E-20 8.3E-25 126.1 7.2 64 9-72 2-68 (374)
35 PRK14290 chaperone protein Dna 99.8 3E-20 6.5E-25 126.3 6.4 62 10-71 3-69 (365)
36 PRK10266 curved DNA-binding pr 99.8 4.8E-20 1E-24 122.9 7.2 63 10-72 4-69 (306)
37 PRK14289 chaperone protein Dna 99.8 5.5E-20 1.2E-24 125.7 7.2 64 9-72 4-71 (386)
38 PRK14292 chaperone protein Dna 99.8 4.5E-20 9.8E-25 125.5 6.5 63 10-72 2-67 (371)
39 KOG0719 Molecular chaperone (D 99.8 5E-20 1.1E-24 118.2 6.1 70 3-72 7-82 (264)
40 smart00271 DnaJ DnaJ molecular 99.8 7.5E-20 1.6E-24 95.7 5.6 54 10-63 1-59 (60)
41 KOG0718 Molecular chaperone (D 99.8 6.2E-20 1.3E-24 126.7 5.9 67 9-75 8-81 (546)
42 PTZ00341 Ring-infected erythro 99.8 1.5E-19 3.3E-24 132.9 6.8 66 9-74 572-640 (1136)
43 cd06257 DnaJ DnaJ domain or J- 99.8 3.1E-19 6.8E-24 91.8 5.8 51 11-61 1-55 (55)
44 PHA03102 Small T antigen; Revi 99.8 4.5E-19 9.8E-24 108.3 4.5 65 9-73 4-70 (153)
45 KOG0721 Molecular chaperone (D 99.8 8.8E-19 1.9E-23 111.4 5.8 65 9-73 98-166 (230)
46 COG2214 CbpA DnaJ-class molecu 99.7 9.8E-18 2.1E-22 104.5 6.7 64 8-71 4-72 (237)
47 PRK05014 hscB co-chaperone Hsc 99.7 1.2E-17 2.6E-22 103.8 6.7 65 10-74 1-76 (171)
48 PRK01356 hscB co-chaperone Hsc 99.7 1.7E-17 3.7E-22 102.7 7.1 64 10-73 2-74 (166)
49 TIGR03835 termin_org_DnaJ term 99.7 1.2E-17 2.6E-22 120.9 6.8 64 10-73 2-68 (871)
50 PRK03578 hscB co-chaperone Hsc 99.7 8E-17 1.7E-21 100.5 7.5 66 9-74 5-81 (176)
51 PRK00294 hscB co-chaperone Hsc 99.7 9E-17 2E-21 100.0 7.3 67 8-74 2-79 (173)
52 KOG0720 Molecular chaperone (D 99.7 4.9E-17 1.1E-21 112.1 5.7 66 9-74 234-302 (490)
53 PTZ00100 DnaJ chaperone protei 99.7 2.2E-16 4.8E-21 92.5 5.5 52 9-60 64-115 (116)
54 PHA02624 large T antigen; Prov 99.6 7.4E-16 1.6E-20 110.0 4.6 65 4-68 5-71 (647)
55 KOG0624 dsRNA-activated protei 99.6 8.8E-16 1.9E-20 104.2 4.3 64 9-72 393-463 (504)
56 KOG0722 Molecular chaperone (D 99.6 1.4E-15 3.1E-20 99.2 3.7 66 8-73 31-99 (329)
57 PRK01773 hscB co-chaperone Hsc 99.5 6.2E-14 1.4E-18 87.3 7.4 64 10-73 2-76 (173)
58 PRK09430 djlA Dna-J like membr 99.5 2.4E-14 5.1E-19 94.3 4.2 53 9-61 199-262 (267)
59 KOG0550 Molecular chaperone (D 99.5 3.6E-14 7.8E-19 97.6 4.1 65 8-72 371-440 (486)
60 KOG0714 Molecular chaperone (D 99.4 1E-13 2.2E-18 89.8 3.6 65 9-73 2-71 (306)
61 COG5407 SEC63 Preprotein trans 99.4 4.7E-13 1E-17 93.0 3.7 63 9-71 97-168 (610)
62 TIGR00714 hscB Fe-S protein as 99.3 8.2E-12 1.8E-16 76.8 6.7 53 22-74 3-64 (157)
63 KOG1150 Predicted molecular ch 99.3 1E-11 2.2E-16 78.8 6.0 62 8-69 51-117 (250)
64 COG5269 ZUO1 Ribosome-associat 99.2 3.5E-11 7.6E-16 79.5 4.6 62 9-70 42-112 (379)
65 KOG0723 Molecular chaperone (D 99.1 1.8E-10 3.9E-15 66.4 5.2 51 12-62 58-108 (112)
66 KOG0568 Molecular chaperone (D 98.9 1.3E-09 2.7E-14 71.0 4.5 52 10-61 47-102 (342)
67 KOG1789 Endocytosis protein RM 98.6 8.1E-08 1.8E-12 73.0 5.2 52 10-61 1281-1337(2235)
68 KOG3192 Mitochondrial J-type c 98.4 7.1E-07 1.5E-11 54.8 4.8 68 7-74 5-83 (168)
69 PF03656 Pam16: Pam16; InterP 97.8 5.2E-05 1.1E-09 45.3 4.8 54 11-64 59-112 (127)
70 COG1076 DjlA DnaJ-domain-conta 97.5 6.1E-05 1.3E-09 46.9 2.2 50 10-59 113-173 (174)
71 KOG0431 Auxilin-like protein a 97.5 0.00015 3.2E-09 51.3 4.0 46 14-59 392-448 (453)
72 COG1076 DjlA DnaJ-domain-conta 97.4 0.00011 2.4E-09 45.8 2.5 63 11-73 2-75 (174)
73 PF13446 RPT: A repeated domai 95.5 0.041 8.8E-07 28.5 4.0 45 10-61 5-49 (62)
74 PF11833 DUF3353: Protein of u 95.3 0.065 1.4E-06 34.2 5.3 38 19-60 1-38 (194)
75 KOG3442 Uncharacterized conser 93.4 0.17 3.7E-06 30.2 3.7 53 12-64 61-113 (132)
76 KOG0724 Zuotin and related mol 92.2 0.25 5.4E-06 33.4 3.7 48 22-69 4-59 (335)
77 PF14687 DUF4460: Domain of un 87.0 1.2 2.6E-05 26.0 3.4 42 20-61 4-53 (112)
78 COG5552 Uncharacterized conser 84.4 5 0.00011 22.0 5.9 33 9-41 2-34 (88)
79 PF07709 SRR: Seven Residue Re 73.1 4.3 9.2E-05 14.8 1.7 13 48-60 2-14 (14)
80 PF07739 TipAS: TipAS antibiot 72.8 14 0.00031 20.7 4.8 49 17-70 51-100 (118)
81 PF10041 DUF2277: Uncharacteri 65.2 21 0.00046 19.6 5.5 34 10-43 3-36 (78)
82 PF03820 Mtc: Tricarboxylate c 62.7 17 0.00037 24.9 4.0 25 19-43 45-69 (308)
83 PF09938 DUF2170: Uncharacteri 62.6 13 0.00027 22.7 3.0 35 1-35 86-125 (140)
84 COG2879 Uncharacterized small 61.5 19 0.00041 19.0 3.2 27 29-55 26-54 (65)
85 PF08447 PAS_3: PAS fold; Int 50.0 3.6 7.9E-05 21.6 -0.7 31 9-43 5-36 (91)
86 COG0089 RplW Ribosomal protein 49.3 21 0.00045 20.3 2.3 21 15-35 25-45 (94)
87 cd01780 PLC_epsilon_RA Ubiquit 47.4 33 0.00071 19.5 2.9 35 9-43 10-44 (93)
88 cd01388 SOX-TCF_HMG-box SOX-TC 46.8 42 0.00091 17.4 5.6 40 29-69 14-53 (72)
89 PRK10455 periplasmic protein; 46.7 52 0.0011 20.3 4.0 22 53-75 124-145 (161)
90 PRK10141 DNA-binding transcrip 45.4 44 0.00095 19.5 3.4 24 50-73 4-27 (117)
91 CHL00030 rpl23 ribosomal prote 43.8 29 0.00063 19.6 2.4 20 15-34 23-42 (93)
92 PF11207 DUF2989: Protein of u 43.4 90 0.002 20.2 5.4 58 15-72 2-59 (203)
93 KOG3767 Sideroflexin [General 41.3 36 0.00078 23.6 2.9 27 17-43 61-87 (328)
94 PF15178 TOM_sub5: Mitochondri 41.1 44 0.00096 16.6 2.5 23 13-35 2-24 (51)
95 KOG2320 RAS effector RIN1 (con 40.9 54 0.0012 24.8 3.9 37 18-59 397-433 (651)
96 PF00076 RRM_1: RNA recognitio 39.8 34 0.00075 16.7 2.2 22 15-36 3-24 (70)
97 PF10475 DUF2450: Protein of u 39.7 72 0.0016 21.3 4.2 32 25-62 182-213 (291)
98 PF04967 HTH_10: HTH DNA bindi 37.6 14 0.00029 18.7 0.3 22 14-35 31-52 (53)
99 TIGR03636 L23_arch archaeal ri 37.5 43 0.00094 18.2 2.4 20 15-34 18-37 (77)
100 PF14893 PNMA: PNMA 36.9 35 0.00077 23.6 2.4 20 14-33 22-41 (331)
101 PF12840 HTH_20: Helix-turn-he 36.7 49 0.0011 16.5 2.4 18 54-71 2-19 (61)
102 cd01390 HMGB-UBF_HMG-box HMGB- 36.0 59 0.0013 16.0 5.6 37 31-69 15-51 (66)
103 PRK05738 rplW 50S ribosomal pr 34.7 49 0.0011 18.5 2.4 20 15-34 24-43 (92)
104 PRK08230 tartrate dehydratase 34.6 1.5E+02 0.0033 20.4 5.8 30 47-76 28-57 (299)
105 KOG0527 HMG-box transcription 34.1 88 0.0019 21.8 3.9 40 29-69 75-114 (331)
106 PF06767 Sif: Sif protein; In 34.0 73 0.0016 22.2 3.4 40 28-67 44-83 (337)
107 PF04282 DUF438: Family of unk 33.4 25 0.00054 18.9 1.0 28 16-43 7-34 (71)
108 PF00505 HMG_box: HMG (high mo 32.8 71 0.0015 15.9 4.6 41 29-71 13-53 (69)
109 PRK15321 putative type III sec 32.7 92 0.002 18.0 3.3 40 4-43 10-55 (120)
110 cd00084 HMG-box High Mobility 32.1 69 0.0015 15.6 5.7 41 28-70 12-52 (66)
111 KOG3960 Myogenic helix-loop-he 31.9 39 0.00085 22.8 1.9 15 46-60 127-141 (284)
112 smart00362 RRM_2 RNA recogniti 30.6 64 0.0014 15.2 2.3 21 15-35 4-24 (72)
113 PRK14102 nifW nitrogenase stab 30.2 40 0.00086 19.6 1.5 51 8-58 13-74 (105)
114 PRK14548 50S ribosomal protein 29.5 69 0.0015 17.7 2.4 21 15-35 25-45 (84)
115 PRK12547 RNA polymerase sigma 28.8 31 0.00068 20.5 1.0 28 14-41 136-163 (164)
116 PF12434 Malate_DH: Malate deh 28.6 64 0.0014 14.1 2.2 17 24-40 10-26 (28)
117 smart00360 RRM RNA recognition 28.5 72 0.0016 14.9 2.2 20 16-35 2-21 (71)
118 PF11590 DNAPolymera_Pol: DNA 28.5 78 0.0017 15.2 2.1 15 45-59 26-40 (41)
119 PF00276 Ribosomal_L23: Riboso 27.9 76 0.0016 17.5 2.4 21 15-35 24-44 (91)
120 PF12515 CaATP_NAI: Ca2+-ATPas 26.5 75 0.0016 15.7 1.9 26 45-70 14-39 (47)
121 PRK12750 cpxP periplasmic repr 26.5 1.4E+02 0.003 18.6 3.6 23 52-75 130-152 (170)
122 PF14706 Tnp_DNA_bind: Transpo 26.4 1E+02 0.0022 15.8 3.5 38 26-63 16-57 (58)
123 PF06975 DUF1299: Protein of u 26.2 15 0.00034 17.8 -0.5 11 53-63 10-20 (47)
124 PF01388 ARID: ARID/BRIGHT DNA 26.1 99 0.0021 16.6 2.6 13 29-41 58-70 (92)
125 TIGR00798 mtc tricarboxylate c 26.0 1.8E+02 0.0039 20.2 4.3 24 20-43 54-77 (318)
126 PF04949 Transcrip_act: Transc 25.1 1.1E+02 0.0025 18.9 2.9 22 45-66 64-85 (159)
127 PRK09649 RNA polymerase sigma 24.9 38 0.00081 20.7 0.9 28 14-41 154-181 (185)
128 PRK15389 fumarate hydratase; P 24.8 1.5E+02 0.0032 22.2 3.9 55 16-76 39-94 (536)
129 cd00590 RRM RRM (RNA recogniti 24.8 92 0.002 14.7 2.3 20 15-34 4-23 (74)
130 PF05781 MRVI1: MRVI1 protein; 24.5 3.1E+02 0.0067 20.6 6.6 25 19-43 185-209 (538)
131 PF14259 RRM_6: RNA recognitio 24.0 50 0.0011 16.4 1.1 18 17-34 5-22 (70)
132 COG3678 CpxP P pilus assembly/ 23.9 1.9E+02 0.0041 17.9 4.6 27 48-75 120-146 (160)
133 PRK09498 sifA secreted effecto 23.6 2.2E+02 0.0048 19.8 4.3 40 29-68 45-84 (336)
134 smart00427 H2B Histone H2B. 23.4 1.1E+02 0.0023 17.3 2.4 12 32-43 8-19 (89)
135 PF03671 Ufm1: Ubiquitin fold 23.3 75 0.0016 17.3 1.7 22 7-28 11-32 (76)
136 COG1448 TyrB Aspartate/tyrosin 23.3 88 0.0019 22.4 2.4 23 55-77 294-316 (396)
137 PF03172 Sp100: Sp100 domain; 22.1 1.5E+02 0.0032 17.2 2.8 24 45-69 38-61 (103)
138 PRK15390 fumarate hydratase Fu 22.0 1.7E+02 0.0036 22.0 3.8 55 15-75 39-94 (548)
139 PF12098 DUF3574: Protein of u 21.9 87 0.0019 18.1 1.9 25 34-58 62-86 (104)
140 PRK12751 cpxP periplasmic stre 21.9 1.8E+02 0.0038 18.1 3.4 22 53-75 124-145 (162)
141 PF04719 TAFII28: hTAFII28-lik 21.4 92 0.002 17.5 1.9 12 23-34 79-90 (90)
142 PTZ00191 60S ribosomal protein 21.4 1.1E+02 0.0023 18.8 2.3 20 15-34 86-105 (145)
143 PF09598 Stm1_N: Stm1; InterP 21.4 31 0.00068 18.4 0.0 11 11-21 1-11 (68)
144 PF01890 CbiG_C: Cobalamin syn 21.1 1.3E+02 0.0027 17.5 2.5 26 16-41 6-31 (121)
145 KOG3840 Uncharaterized conserv 21.0 69 0.0015 22.5 1.6 29 47-75 191-219 (438)
146 PF02208 Sorb: Sorbin homologo 20.9 1.1E+02 0.0023 15.1 1.8 11 31-41 33-43 (47)
147 PF14606 Lipase_GDSL_3: GDSL-l 20.7 1.3E+02 0.0029 18.9 2.7 29 15-43 64-95 (178)
148 PRK10613 hypothetical protein; 20.7 40 0.00086 18.3 0.3 11 23-33 64-74 (74)
149 cd01766 Ufm1 Urm1-like ubiquit 20.4 1.2E+02 0.0025 16.7 2.1 21 7-27 11-31 (82)
150 PF00880 Nebulin: Nebulin repe 20.2 94 0.002 13.0 2.2 24 48-71 4-27 (29)
151 COG4339 Uncharacterized protei 20.1 9.3 0.0002 24.3 -2.5 42 1-42 1-43 (208)
152 PF11608 Limkain-b1: Limkain b 20.0 1.5E+02 0.0033 16.7 2.6 27 13-39 5-31 (90)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.5e-27 Score=159.03 Aligned_cols=67 Identities=45% Similarity=0.599 Sum_probs=62.7
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961 8 MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSLVS 74 (78)
Q Consensus 8 ~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~ 74 (78)
+..|||+||||+++|+.++||+|||+|+++||||+++ ++++|++|++||+||+||.+|+.||++...
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~ 72 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHA 72 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCcc
Confidence 4679999999999999999999999999999999995 789999999999999999999999987644
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.5e-25 Score=149.19 Aligned_cols=70 Identities=41% Similarity=0.527 Sum_probs=64.5
Q ss_pred CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHhHHh
Q 034961 6 PGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSLVST 75 (78)
Q Consensus 6 ~~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~~ 75 (78)
.....|||+||||+++|+..+||+|||+|++++|||+++ +.+.|+.|+.||+||+||.+|+.||+.....
T Consensus 12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEeg 85 (336)
T KOG0713|consen 12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEG 85 (336)
T ss_pred hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhh
Confidence 345689999999999999999999999999999999995 6899999999999999999999999987544
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=9.6e-24 Score=143.52 Aligned_cols=64 Identities=42% Similarity=0.518 Sum_probs=60.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
..|||+||||+++|+.++||+|||++++++|||+++ +++.|++|++||+||+||.+|+.||+..
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G 69 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYG 69 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhc
Confidence 479999999999999999999999999999999984 5689999999999999999999999864
No 4
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.89 E-value=3.4e-23 Score=142.77 Aligned_cols=65 Identities=43% Similarity=0.577 Sum_probs=61.8
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDMSLV 73 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~ 73 (78)
..|||+||||+++|+.++||+|||++++++|||++++.+.|++|++||+||+||.+|+.||+...
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~~G~ 91 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDEYGE 91 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhhhcc
Confidence 57999999999999999999999999999999999888999999999999999999999998643
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=7e-23 Score=139.42 Aligned_cols=64 Identities=41% Similarity=0.494 Sum_probs=60.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
..|||+||||+++|+.++||+|||++++++|||+++ +.+.|++|++||+||+||.+|+.||+..
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G 69 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFG 69 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhcc
Confidence 469999999999999999999999999999999973 6789999999999999999999999854
No 6
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=9.1e-23 Score=139.62 Aligned_cols=65 Identities=34% Similarity=0.489 Sum_probs=60.9
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 8 MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 8 ~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
+..|||+||||+++|+.++||+|||++++++|||+++ +.+.|++|++||+||+||.+|+.||+..
T Consensus 7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G 75 (392)
T PRK14279 7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETR 75 (392)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhh
Confidence 4579999999999999999999999999999999984 5689999999999999999999999864
No 7
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.5e-22 Score=135.63 Aligned_cols=67 Identities=45% Similarity=0.665 Sum_probs=62.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHcCChhHHHHHHHHhHHh
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-NGWDFTEIHNAYETLSDPKARAVYDMSLVST 75 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~~ 75 (78)
.+.+|+||||+++|+.++||+|||++++++|||+++ +.++|++|..||+||+||++|..||+..+..
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~ 70 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEG 70 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhh
Confidence 568999999999999999999999999999999996 6799999999999999999999999987543
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=4.1e-22 Score=135.68 Aligned_cols=64 Identities=42% Similarity=0.573 Sum_probs=59.9
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
..|||+||||+++|+.++||+|||++++++|||+++ +.+.|++|++||+||+||.+|+.||+..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G 70 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFG 70 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhC
Confidence 369999999999999999999999999999999974 5689999999999999999999999864
No 9
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.86 E-value=4.8e-22 Score=105.47 Aligned_cols=59 Identities=47% Similarity=0.718 Sum_probs=55.5
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChhHHHHHH
Q 034961 11 SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----NGWDFTEIHNAYETLSDPKARAVYD 69 (78)
Q Consensus 11 d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----~~~~~~~i~~Ay~~L~d~~~R~~Yd 69 (78)
|||+||||+++++.++|+++|+++++.+|||+.+ +...|..|++||++|++|.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999963 3479999999999999999999998
No 10
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=1.1e-21 Score=133.61 Aligned_cols=64 Identities=42% Similarity=0.671 Sum_probs=59.8
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
..|||+||||+++|+.++||+|||++++++|||++. +++.|+.|++||++|+||.+|+.||+..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G 69 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFG 69 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhC
Confidence 369999999999999999999999999999999983 5688999999999999999999999864
No 11
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=1.1e-21 Score=134.14 Aligned_cols=63 Identities=43% Similarity=0.613 Sum_probs=59.5
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHH
Q 034961 8 MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDM 70 (78)
Q Consensus 8 ~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~ 70 (78)
+..|||+||||+++|+.++||+|||++++++|||+++ +++.|+.|++||+||+||.+|+.||+
T Consensus 7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 3579999999999999999999999999999999973 56899999999999999999999998
No 12
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=1.2e-21 Score=133.18 Aligned_cols=64 Identities=42% Similarity=0.607 Sum_probs=59.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
..|||+||||+++|+.++||+|||++++++|||+++ +.+.|++|++||+||+||.+|+.||+..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g 71 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFG 71 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcC
Confidence 469999999999999999999999999999999974 4679999999999999999999999854
No 13
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.3e-21 Score=132.97 Aligned_cols=64 Identities=38% Similarity=0.463 Sum_probs=59.7
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
..|||+||||+++|+.++||+|||++++++|||+++ +.+.|++|++||+||+||.+|..||+..
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g 69 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFG 69 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcC
Confidence 369999999999999999999999999999999984 5678999999999999999999999854
No 14
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.8e-21 Score=128.96 Aligned_cols=65 Identities=37% Similarity=0.576 Sum_probs=60.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSLV 73 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~ 73 (78)
..|||+||||+++|+.++||+|||++++++|||+++ +.+.|+.|++||++|+||.+|+.||+...
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~ 70 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGT 70 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 469999999999999999999999999999999984 57899999999999999999999998543
No 15
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.8e-21 Score=132.76 Aligned_cols=64 Identities=42% Similarity=0.638 Sum_probs=59.9
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
..|||+||||+++|+.++||+|||++++++|||+++ +.+.|+.|++||+||+||.+|+.||+..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G 69 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYG 69 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcC
Confidence 469999999999999999999999999999999974 5789999999999999999999999854
No 16
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.7e-21 Score=132.90 Aligned_cols=64 Identities=39% Similarity=0.555 Sum_probs=59.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
..|||+||||+++|+.++||+|||++++++|||+++ +.+.|+.|++||+||+||.+|+.||+..
T Consensus 2 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G 68 (378)
T PRK14278 2 ARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGG 68 (378)
T ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccC
Confidence 369999999999999999999999999999999984 5678999999999999999999999753
No 17
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=2.1e-21 Score=132.54 Aligned_cols=65 Identities=42% Similarity=0.625 Sum_probs=60.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSLV 73 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~ 73 (78)
..|||+||||+++|+.++||+|||++++++|||+++ +.+.|+.|++||+||+||.+|+.||+...
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~ 69 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGH 69 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcc
Confidence 469999999999999999999999999999999984 57899999999999999999999998653
No 18
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.9e-21 Score=132.60 Aligned_cols=64 Identities=39% Similarity=0.552 Sum_probs=59.8
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
..|||+||||+++|+.++||+|||++++++|||+++ +.+.|++|++||++|+||.+|+.||+..
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G 70 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFG 70 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcC
Confidence 369999999999999999999999999999999984 5689999999999999999999999854
No 19
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=2.6e-21 Score=131.93 Aligned_cols=64 Identities=44% Similarity=0.576 Sum_probs=60.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
..|||+||||+++|+.++||+||+++++++|||+++ +.+.|++|++||++|+||.+|+.||+..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G 70 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFG 70 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhc
Confidence 569999999999999999999999999999999973 6789999999999999999999999854
No 20
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=3.3e-21 Score=131.71 Aligned_cols=64 Identities=48% Similarity=0.682 Sum_probs=59.7
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
..|||+||||+++|+.++||+|||++++++|||+++ +++.|++|++||+||+||.+|+.||+..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G 71 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFG 71 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhc
Confidence 369999999999999999999999999999999974 5678999999999999999999999854
No 21
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=3.9e-21 Score=130.63 Aligned_cols=64 Identities=44% Similarity=0.565 Sum_probs=60.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
..|||+||||+++|+.++||+|||++++++|||+++ +.+.|+.|++||+||+||.+|+.||+..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G 70 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYG 70 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhc
Confidence 469999999999999999999999999999999984 5688999999999999999999999864
No 22
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=4e-21 Score=130.96 Aligned_cols=63 Identities=46% Similarity=0.630 Sum_probs=59.6
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
.|||+||||+++|+.++||+||+++++++|||+++ +.+.|++|++||+||+||.+|+.||+..
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G 69 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFG 69 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcC
Confidence 69999999999999999999999999999999973 6789999999999999999999999854
No 23
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=3.1e-21 Score=131.40 Aligned_cols=64 Identities=42% Similarity=0.519 Sum_probs=59.7
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
..|||+||||+++|+.++||+|||++++++|||+++ +++.|++|++||+||+||.+|+.||+..
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g 70 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFG 70 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcc
Confidence 469999999999999999999999999999999974 4679999999999999999999999854
No 24
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=3.7e-21 Score=131.22 Aligned_cols=64 Identities=42% Similarity=0.574 Sum_probs=59.7
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
..|||+||||+++|+.++||+|||++++++|||+++ +++.|+.|++||+||+||.+|+.||+..
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G 70 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFG 70 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcC
Confidence 369999999999999999999999999999999984 5689999999999999999999999853
No 25
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=6.8e-21 Score=130.37 Aligned_cols=63 Identities=41% Similarity=0.540 Sum_probs=59.2
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
.|||+||||+++|+.++||+|||++++++|||+++ +.+.|+.|++||++|+||.+|+.||+..
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G 67 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYG 67 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence 48999999999999999999999999999999984 5688999999999999999999999864
No 26
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=6e-21 Score=130.85 Aligned_cols=65 Identities=40% Similarity=0.503 Sum_probs=60.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSLV 73 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~ 73 (78)
..|||+||||+++|+.++||+|||++++++|||+++ +.+.|+.|++||++|+||.+|+.||+...
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~ 70 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGH 70 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 369999999999999999999999999999999984 46889999999999999999999998643
No 27
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.1e-20 Score=125.27 Aligned_cols=65 Identities=43% Similarity=0.641 Sum_probs=61.6
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCC---ccHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961 10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLS---SNGWDFTEIHNAYETLSDPKARAVYDMSLVS 74 (78)
Q Consensus 10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~---~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~ 74 (78)
.|||+||||+++|+..+||+||+++++++|||.+ .+.+.|++|.+||+||+|+++|..||..+..
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~ 110 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLE 110 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhh
Confidence 3999999999999999999999999999999998 4789999999999999999999999998765
No 28
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=8.6e-21 Score=129.06 Aligned_cols=64 Identities=47% Similarity=0.619 Sum_probs=59.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
..|||+||||+++|+.++||+||+++++++|||+++ +.+.|+.|++||++|+||.+|..||+..
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g 70 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYG 70 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcc
Confidence 469999999999999999999999999999999974 4678999999999999999999999854
No 29
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=8.7e-21 Score=130.55 Aligned_cols=70 Identities=44% Similarity=0.527 Sum_probs=63.6
Q ss_pred CCCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961 5 APGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----NGWDFTEIHNAYETLSDPKARAVYDMSLVS 74 (78)
Q Consensus 5 ~~~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~ 74 (78)
.+.+-..||+||||.++++..+||++||++++++|||+++ +.+.|+.|+.||+|||||..|++||.-..+
T Consensus 3 ~~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreq 77 (508)
T KOG0717|consen 3 NPFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQ 77 (508)
T ss_pred CchhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHH
Confidence 4556679999999999999999999999999999999974 689999999999999999999999975543
No 30
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.3e-20 Score=125.00 Aligned_cols=68 Identities=37% Similarity=0.510 Sum_probs=63.7
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHhHHhh
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSLVSTR 76 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~~~ 76 (78)
+.|||+||||+++++..+|+++|+..++.+|||+++ +.+.|+.|.+||+||+|+..|..||+.+....
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~ 75 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGS 75 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Confidence 679999999999999999999999999999999995 67889999999999999999999999887643
No 31
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.5e-20 Score=128.05 Aligned_cols=64 Identities=38% Similarity=0.556 Sum_probs=59.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
..|||+||||+++|+.++||+||+++++++|||+++ +++.|++|++||++|+|+.+|+.||+..
T Consensus 2 ~~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G 68 (372)
T PRK14300 2 SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFG 68 (372)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcc
Confidence 369999999999999999999999999999999873 5789999999999999999999999853
No 32
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.1e-20 Score=121.79 Aligned_cols=65 Identities=45% Similarity=0.567 Sum_probs=60.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSLV 73 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~ 73 (78)
..|+|+|||++++++.++||++||++++++|||+++ +...|.+|++||.||+||.+|..||....
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~ 98 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGE 98 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhh
Confidence 357999999999999999999999999999999984 56899999999999999999999998853
No 33
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.82 E-value=2.8e-20 Score=125.83 Aligned_cols=62 Identities=48% Similarity=0.657 Sum_probs=58.5
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 11 SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 11 d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
|||+||||+++|+.++||+||+++++++|||+++ +.+.|+.|++||++|+|+.+|..||+..
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g 65 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFG 65 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcc
Confidence 7999999999999999999999999999999984 5689999999999999999999999854
No 34
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=3.8e-20 Score=126.08 Aligned_cols=64 Identities=44% Similarity=0.636 Sum_probs=59.8
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
..|||+||||+++++.++|++||+++++++|||+++ +.+.|+.|++||++|+||.+|+.||...
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g 68 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFG 68 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhcc
Confidence 369999999999999999999999999999999973 6789999999999999999999999854
No 35
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=3e-20 Score=126.28 Aligned_cols=62 Identities=42% Similarity=0.672 Sum_probs=58.6
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChhHHHHHHHH
Q 034961 10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----NGWDFTEIHNAYETLSDPKARAVYDMS 71 (78)
Q Consensus 10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 71 (78)
.|||+||||+++|+.++|++|||++++++|||+++ +.+.|+.|++||++|+||.+|+.||+.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~ 69 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQT 69 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhccc
Confidence 69999999999999999999999999999999974 458899999999999999999999974
No 36
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.82 E-value=4.8e-20 Score=122.87 Aligned_cols=63 Identities=41% Similarity=0.643 Sum_probs=59.5
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
.|||+||||+++++.++||+|||++++++|||++. +.+.|++|++||++|+||.+|+.||+..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g 69 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLW 69 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 69999999999999999999999999999999873 6789999999999999999999999854
No 37
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=5.5e-20 Score=125.68 Aligned_cols=64 Identities=42% Similarity=0.567 Sum_probs=59.9
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
..|||+||||+++|+.++|++||+++++++|||+++ +.+.|+.|++||++|+||.+|+.||+..
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G 71 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFG 71 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhc
Confidence 469999999999999999999999999999999984 5688999999999999999999999854
No 38
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=4.5e-20 Score=125.54 Aligned_cols=63 Identities=43% Similarity=0.559 Sum_probs=59.2
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
.|||+||||+++|+.++||+||+++++++|||+++ +.+.|+.|++||++|+||.+|+.||+..
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G 67 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFG 67 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcC
Confidence 48999999999999999999999999999999984 6789999999999999999999999853
No 39
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=5e-20 Score=118.22 Aligned_cols=70 Identities=37% Similarity=0.451 Sum_probs=63.4
Q ss_pred CCCCCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCC------ccHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 3 LMAPGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLS------SNGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 3 ~~~~~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~------~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
+--.+...|+|+||||.++|+..+|++||+++++.+|||++ .+...|+.|+.||.||+|..+|+.||...
T Consensus 7 ~~~~f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG 82 (264)
T KOG0719|consen 7 CTGSFNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETG 82 (264)
T ss_pred ccccccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccC
Confidence 33456677999999999999999999999999999999998 36788999999999999999999999754
No 40
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.81 E-value=7.5e-20 Score=95.68 Aligned_cols=54 Identities=46% Similarity=0.688 Sum_probs=50.9
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChh
Q 034961 10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----NGWDFTEIHNAYETLSDPK 63 (78)
Q Consensus 10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----~~~~~~~i~~Ay~~L~d~~ 63 (78)
.|||+||||+++++.++|+++|+++++.+|||+++ +.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 48999999999999999999999999999999986 6789999999999999985
No 41
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=6.2e-20 Score=126.70 Aligned_cols=67 Identities=37% Similarity=0.554 Sum_probs=61.7
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-------cHHHHHHHHHHHHHcCChhHHHHHHHHhHHh
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-------NGWDFTEIHNAYETLSDPKARAVYDMSLVST 75 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~~ 75 (78)
+.+||.+|+|+++|+.++|++|||++++.+|||+.. +++.|++|+.||+||+||.+|+.||....++
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qG 81 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQG 81 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcc
Confidence 348999999999999999999999999999999972 6788999999999999999999999876654
No 42
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.79 E-value=1.5e-19 Score=132.89 Aligned_cols=66 Identities=27% Similarity=0.355 Sum_probs=61.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSLVS 74 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~ 74 (78)
.++||+||||+++|+..+||+|||++++++|||+++ +...|+.|++||+||+||.+|+.||+....
T Consensus 572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~ 640 (1136)
T PTZ00341 572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYD 640 (1136)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhcccc
Confidence 579999999999999999999999999999999985 578899999999999999999999986543
No 43
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.79 E-value=3.1e-19 Score=91.78 Aligned_cols=51 Identities=47% Similarity=0.683 Sum_probs=48.4
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCC
Q 034961 11 SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSD 61 (78)
Q Consensus 11 d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d 61 (78)
|||+||||+++++.++|+++|+++++.+|||+.+ +...|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999999999999999986 57899999999999986
No 44
>PHA03102 Small T antigen; Reviewed
Probab=99.77 E-value=4.5e-19 Score=108.32 Aligned_cols=65 Identities=12% Similarity=0.169 Sum_probs=60.7
Q ss_pred ccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961 9 GGSLYEVLRVEPTA--MISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDMSLV 73 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a--~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~ 73 (78)
...+|+||||+++| +..+||+||+++++.+|||++++.+.|+.|++||++|+|+..|..||....
T Consensus 4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~yd~~g~ 70 (153)
T PHA03102 4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLRDLDGEE 70 (153)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhccccccCC
Confidence 34689999999999 999999999999999999999999999999999999999999999997643
No 45
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=8.8e-19 Score=111.36 Aligned_cols=65 Identities=34% Similarity=0.455 Sum_probs=60.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCC----ccHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLS----SNGWDFTEIHNAYETLSDPKARAVYDMSLV 73 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~----~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~ 73 (78)
..|+|+||||+++++..+||+|||+++.++|||+. ++++.|..|.+||+.|+|+..|..|+....
T Consensus 98 ~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~ 166 (230)
T KOG0721|consen 98 KFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGN 166 (230)
T ss_pred cCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCC
Confidence 35999999999999999999999999999999995 578889999999999999999999987653
No 46
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=9.8e-18 Score=104.47 Aligned_cols=64 Identities=47% Similarity=0.639 Sum_probs=59.8
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChhHHHHHHHH
Q 034961 8 MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----NGWDFTEIHNAYETLSDPKARAVYDMS 71 (78)
Q Consensus 8 ~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 71 (78)
...++|+||||+++++..+|+++|+++++++|||+++ +.+.|..|++||++|+|+..|..||+.
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 4569999999999999999999999999999999984 458999999999999999999999985
No 47
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.73 E-value=1.2e-17 Score=103.76 Aligned_cols=65 Identities=23% Similarity=0.345 Sum_probs=57.2
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCc---------cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961 10 GSLYEVLRVEPT--AMISEIKTVYRSLAKVYHHDLSS---------NGWDFTEIHNAYETLSDPKARAVYDMSLVS 74 (78)
Q Consensus 10 ~d~Y~iLgv~~~--a~~~~Ik~ay~~~~~~~hPd~~~---------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~ 74 (78)
.|||+||||++. ++..+|+++|+++++.+|||+.. +...+..|++||++|+||.+|+.|+-.+.+
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g 76 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHG 76 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcC
Confidence 489999999996 57899999999999999999962 245789999999999999999999876653
No 48
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.73 E-value=1.7e-17 Score=102.68 Aligned_cols=64 Identities=25% Similarity=0.349 Sum_probs=56.4
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961 10 GSLYEVLRVEPT--AMISEIKTVYRSLAKVYHHDLSSN-------GWDFTEIHNAYETLSDPKARAVYDMSLV 73 (78)
Q Consensus 10 ~d~Y~iLgv~~~--a~~~~Ik~ay~~~~~~~hPd~~~~-------~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~ 73 (78)
.|||++|||++. ++..+|+++|+++++++|||+... ...+..|++||+||+||.+|+.|...+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 489999999997 579999999999999999999732 2347899999999999999999987764
No 49
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.72 E-value=1.2e-17 Score=120.85 Aligned_cols=64 Identities=42% Similarity=0.546 Sum_probs=59.3
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961 10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSLV 73 (78)
Q Consensus 10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~ 73 (78)
.|||+||||+++|+..+||++||++++++|||+++ +...|+.|++||++|+||.+|+.||....
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~ 68 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGH 68 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcc
Confidence 58999999999999999999999999999999984 45689999999999999999999998653
No 50
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.70 E-value=8e-17 Score=100.49 Aligned_cols=66 Identities=23% Similarity=0.283 Sum_probs=57.3
Q ss_pred ccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCc---------cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961 9 GGSLYEVLRVEPT--AMISEIKTVYRSLAKVYHHDLSS---------NGWDFTEIHNAYETLSDPKARAVYDMSLVS 74 (78)
Q Consensus 9 ~~d~Y~iLgv~~~--a~~~~Ik~ay~~~~~~~hPd~~~---------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~ 74 (78)
..|||+||||++. ++..+|+++|+++++.+|||+.. +.+.+..|++||++|+||.+|+.|.-.+.+
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G 81 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRG 81 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcC
Confidence 4799999999996 57899999999999999999973 234468999999999999999999976653
No 51
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.69 E-value=9e-17 Score=100.02 Aligned_cols=67 Identities=25% Similarity=0.377 Sum_probs=59.2
Q ss_pred CccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCc---------cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961 8 MGGSLYEVLRVEPTA--MISEIKTVYRSLAKVYHHDLSS---------NGWDFTEIHNAYETLSDPKARAVYDMSLVS 74 (78)
Q Consensus 8 ~~~d~Y~iLgv~~~a--~~~~Ik~ay~~~~~~~hPd~~~---------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~ 74 (78)
...|||++||+++.. +..+|+++|+++++.+|||+.. +...+..|++||++|+||.+|+.|+-.+.+
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g 79 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSG 79 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcC
Confidence 467999999999985 6799999999999999999973 245689999999999999999999987754
No 52
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=4.9e-17 Score=112.11 Aligned_cols=66 Identities=24% Similarity=0.348 Sum_probs=62.7
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCC---ccHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLS---SNGWDFTEIHNAYETLSDPKARAVYDMSLVS 74 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~---~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~ 74 (78)
..|+|.+|||+.+++.++||+.||+++..+|||++ .+++.|+.|+.||++|+|+.+|..||..+..
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~k 302 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKK 302 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 57999999999999999999999999999999998 4889999999999999999999999988764
No 53
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.66 E-value=2.2e-16 Score=92.51 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=49.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcC
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLS 60 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~ 60 (78)
..++|+||||+++++.++|+++|+++++.+|||++++...|.+|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 3589999999999999999999999999999999988999999999999985
No 54
>PHA02624 large T antigen; Provisional
Probab=99.60 E-value=7.4e-16 Score=109.96 Aligned_cols=65 Identities=17% Similarity=0.268 Sum_probs=60.6
Q ss_pred CCCCCccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHH
Q 034961 4 MAPGMGGSLYEVLRVEPTA--MISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVY 68 (78)
Q Consensus 4 ~~~~~~~d~Y~iLgv~~~a--~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Y 68 (78)
|......++|++|||++++ +..+||+|||++++++|||++++.+.|++|+.||++|+|+.+|..|
T Consensus 5 Ltree~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 5 LSREESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred hchHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 4455567899999999999 9999999999999999999999999999999999999999999988
No 55
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.60 E-value=8.8e-16 Score=104.23 Aligned_cols=64 Identities=34% Similarity=0.472 Sum_probs=59.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-------cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-------NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
..|||+||||.++|+..+|.+|||+++.++|||... ++.+|.-|..|-+||+||.+|+.||..-
T Consensus 393 kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGe 463 (504)
T KOG0624|consen 393 KRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGE 463 (504)
T ss_pred cchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCC
Confidence 469999999999999999999999999999999873 5678999999999999999999999753
No 56
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.4e-15 Score=99.18 Aligned_cols=66 Identities=38% Similarity=0.476 Sum_probs=60.4
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCC---ccHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961 8 MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLS---SNGWDFTEIHNAYETLSDPKARAVYDMSLV 73 (78)
Q Consensus 8 ~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~---~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~ 73 (78)
...|+|+||||++.++..+|.+|||++++++|||+. +..+.|..|..||++|.|...|..||-.++
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyald 99 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALD 99 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhc
Confidence 346999999999999999999999999999999998 356789999999999999999999997664
No 57
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.52 E-value=6.2e-14 Score=87.31 Aligned_cols=64 Identities=20% Similarity=0.210 Sum_probs=56.9
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCc---------cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961 10 GSLYEVLRVEPT--AMISEIKTVYRSLAKVYHHDLSS---------NGWDFTEIHNAYETLSDPKARAVYDMSLV 73 (78)
Q Consensus 10 ~d~Y~iLgv~~~--a~~~~Ik~ay~~~~~~~hPd~~~---------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~ 73 (78)
.|||++||+++. .+...+++.|+++.+.+|||+.. +.+....||+||.+|.||.+|+.|--.+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 489999999987 58999999999999999999972 24567899999999999999999987665
No 58
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.49 E-value=2.4e-14 Score=94.25 Aligned_cols=53 Identities=32% Similarity=0.323 Sum_probs=48.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----------cHHHHHHHHHHHHHcCC
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----------NGWDFTEIHNAYETLSD 61 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----------~~~~~~~i~~Ay~~L~d 61 (78)
..++|+||||+++++.++||++||++++++|||+.. +.+.|+.|++||++|..
T Consensus 199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999999999999999999999999951 45789999999999975
No 59
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.6e-14 Score=97.57 Aligned_cols=65 Identities=35% Similarity=0.493 Sum_probs=59.9
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 8 MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 8 ~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
...|||.||||+++++..+|+++|+++++.+|||++. ++..|.++-+||.+|+||.+|..||...
T Consensus 371 kRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 371 KRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred hhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 3569999999999999999999999999999999983 5788999999999999999999999654
No 60
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1e-13 Score=89.82 Aligned_cols=65 Identities=42% Similarity=0.624 Sum_probs=58.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----NGWDFTEIHNAYETLSDPKARAVYDMSLV 73 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~ 73 (78)
..|+|.||||.++++..+|++||+.+++.+|||+++ +...|.+|.+||++|+|+.+|..||+...
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 469999999999999999999999999999999963 33468999999999999999999998654
No 61
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.36 E-value=4.7e-13 Score=93.03 Aligned_cols=63 Identities=30% Similarity=0.426 Sum_probs=57.8
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---------cHHHHHHHHHHHHHcCChhHHHHHHHH
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---------NGWDFTEIHNAYETLSDPKARAVYDMS 71 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 71 (78)
.-|+|+|||++.+++..+||++||+++.++|||+.+ -++.+..|++||+.|+|...|..|-..
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~y 168 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNY 168 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 359999999999999999999999999999999973 368899999999999999999999764
No 62
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.31 E-value=8.2e-12 Score=76.76 Aligned_cols=53 Identities=32% Similarity=0.427 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCc---------cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961 22 AMISEIKTVYRSLAKVYHHDLSS---------NGWDFTEIHNAYETLSDPKARAVYDMSLVS 74 (78)
Q Consensus 22 a~~~~Ik~ay~~~~~~~hPd~~~---------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~ 74 (78)
.+..+|+++|+++++.+|||+.. +...+..|++||++|+||.+|+.|.-.+.+
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g 64 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHG 64 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcC
Confidence 47789999999999999999852 346799999999999999999999988753
No 63
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1e-11 Score=78.84 Aligned_cols=62 Identities=27% Similarity=0.409 Sum_probs=55.4
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChhHHHHHH
Q 034961 8 MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----NGWDFTEIHNAYETLSDPKARAVYD 69 (78)
Q Consensus 8 ~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----~~~~~~~i~~Ay~~L~d~~~R~~Yd 69 (78)
-..|+|+||.|.|..+.++|++.||+++..+|||+++ +...|..|.+||..|.|+..|..-+
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 4569999999999999999999999999999999995 4678999999999999998665443
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3.5e-11 Score=79.54 Aligned_cols=62 Identities=29% Similarity=0.324 Sum_probs=55.8
Q ss_pred ccCcccccccCC---CCCHHHHHHHHHHHHHHhCCCCC------ccHHHHHHHHHHHHHcCChhHHHHHHH
Q 034961 9 GGSLYEVLRVEP---TAMISEIKTVYRSLAKVYHHDLS------SNGWDFTEIHNAYETLSDPKARAVYDM 70 (78)
Q Consensus 9 ~~d~Y~iLgv~~---~a~~~~Ik~ay~~~~~~~hPd~~------~~~~~~~~i~~Ay~~L~d~~~R~~Yd~ 70 (78)
..|+|.+||++. .+++.+|.+++++.+.++|||+. +..+.|..|+.||+||+|+..|..||-
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS 112 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDS 112 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccc
Confidence 469999999985 66889999999999999999986 346889999999999999999999984
No 65
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.8e-10 Score=66.37 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=47.4
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCCh
Q 034961 12 LYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDP 62 (78)
Q Consensus 12 ~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~ 62 (78)
-=.||||+++++.+.||.++|+++...|||+++......+|++|+++|...
T Consensus 58 A~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 58 AALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEGT 108 (112)
T ss_pred HHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhcc
Confidence 346999999999999999999999999999999999999999999999754
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.3e-09 Score=70.99 Aligned_cols=52 Identities=29% Similarity=0.456 Sum_probs=47.3
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHH-HcCC
Q 034961 10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYE-TLSD 61 (78)
Q Consensus 10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~-~L~d 61 (78)
..||.||||..+|+.++++.+|..+++.+|||.+. +.+.|.+|.+||. ||+.
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999983 6788999999999 6664
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=8.1e-08 Score=73.03 Aligned_cols=52 Identities=31% Similarity=0.403 Sum_probs=44.9
Q ss_pred cCcccccccCC----CCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHcCC
Q 034961 10 GSLYEVLRVEP----TAMISEIKTVYRSLAKVYHHDLSS-NGWDFTEIHNAYETLSD 61 (78)
Q Consensus 10 ~d~Y~iLgv~~----~a~~~~Ik~ay~~~~~~~hPd~~~-~~~~~~~i~~Ay~~L~d 61 (78)
.+-|+||.|+- ....++||++|++++.+||||+++ ..+.|..+++||+.|+.
T Consensus 1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLSS 1337 (2235)
T ss_pred HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHH
Confidence 36899999874 335588999999999999999996 67889999999999983
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=7.1e-07 Score=54.78 Aligned_cols=68 Identities=28% Similarity=0.449 Sum_probs=55.6
Q ss_pred CCccCcccccccCC--CCCHHHHHHHHHHHHHHhCCCCCc---------cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961 7 GMGGSLYEVLRVEP--TAMISEIKTVYRSLAKVYHHDLSS---------NGWDFTEIHNAYETLSDPKARAVYDMSLVS 74 (78)
Q Consensus 7 ~~~~d~Y~iLgv~~--~a~~~~Ik~ay~~~~~~~hPd~~~---------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~ 74 (78)
+...+||.++|... ..++..+..-|....+++|||... +.+....|++||.+|.||..|+.|--.+..
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g 83 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKG 83 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 34568999998654 446777887999999999999852 467789999999999999999999866654
No 69
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=97.83 E-value=5.2e-05 Score=45.31 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=43.1
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhH
Q 034961 11 SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKA 64 (78)
Q Consensus 11 d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~ 64 (78)
.-..||||++..+.++|.+.|.++....+|++++....-..|..|.+.|..+..
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~El~ 112 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQELK 112 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999999999886553
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=6.1e-05 Score=46.91 Aligned_cols=50 Identities=34% Similarity=0.388 Sum_probs=43.1
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----------cHHHHHHHHHHHHHc
Q 034961 10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----------NGWDFTEIHNAYETL 59 (78)
Q Consensus 10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----------~~~~~~~i~~Ay~~L 59 (78)
.+.|.+||+....+..+|+++|+.+....|||+.. ..+.++.|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 58899999999999999999999999999999851 456788888888643
No 71
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=97.49 E-value=0.00015 Score=51.27 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=34.2
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----------cHHHHHHHHHHHHHc
Q 034961 14 EVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----------NGWDFTEIHNAYETL 59 (78)
Q Consensus 14 ~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----------~~~~~~~i~~Ay~~L 59 (78)
+=+++..-.+..+||++||+.++.+||||.. +++.|..+++||...
T Consensus 392 qpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 392 QPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred ccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 3345566679999999999999999999972 345566666666543
No 72
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00011 Score=45.78 Aligned_cols=63 Identities=29% Similarity=0.420 Sum_probs=50.3
Q ss_pred CcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCc---------cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961 11 SLYEVLRVEPTA--MISEIKTVYRSLAKVYHHDLSS---------NGWDFTEIHNAYETLSDPKARAVYDMSLV 73 (78)
Q Consensus 11 d~Y~iLgv~~~a--~~~~Ik~ay~~~~~~~hPd~~~---------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~ 73 (78)
+++..+|..+.+ ..+.++..|+.+.+.+|||+.. ....+..++.||.+|.+|..|+.|-..+.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 456666766655 4566899999999999999973 23568889999999999999999976554
No 73
>PF13446 RPT: A repeated domain in UCH-protein
Probab=95.47 E-value=0.041 Score=28.54 Aligned_cols=45 Identities=13% Similarity=0.201 Sum_probs=33.8
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCC
Q 034961 10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSD 61 (78)
Q Consensus 10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d 61 (78)
.+-|+.|||+++.+.+.|-.+|..... ..| .....+.+|..++.+
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P------~~~~~~r~AL~~Ia~ 49 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN-DDP------SQKDTLREALRVIAE 49 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH-cCh------HhHHHHHHHHHHHHH
Confidence 357999999999999999999998887 333 334555666666654
No 74
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=95.35 E-value=0.065 Score=34.16 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcC
Q 034961 19 EPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLS 60 (78)
Q Consensus 19 ~~~a~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~ 60 (78)
+++|+.+||.+|+.++..++-- ++..-..|..||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~g----d~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAG----DEKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHH
Confidence 5789999999999999999954 4678889999999543
No 75
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.41 E-value=0.17 Score=30.23 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=43.1
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhH
Q 034961 12 LYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKA 64 (78)
Q Consensus 12 ~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~ 64 (78)
--+||+|++..+.++|.+.|..+-....+.+++....-..|..|-+-|..+..
T Consensus 61 a~qILnV~~~ln~eei~k~yehLFevNdkskGGSFYLQSKVfRAkErld~El~ 113 (132)
T KOG3442|consen 61 AQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFYLQSKVFRAKERLDEELK 113 (132)
T ss_pred HhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcceeehHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999998876666667777776654433
No 76
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=92.15 E-value=0.25 Score=33.44 Aligned_cols=48 Identities=27% Similarity=0.351 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCCC--------ccHHHHHHHHHHHHHcCChhHHHHHH
Q 034961 22 AMISEIKTVYRSLAKVYHHDLS--------SNGWDFTEIHNAYETLSDPKARAVYD 69 (78)
Q Consensus 22 a~~~~Ik~ay~~~~~~~hPd~~--------~~~~~~~~i~~Ay~~L~d~~~R~~Yd 69 (78)
++...|..+|+..+...||+.. ...+.+.+|.+||.+|.+...|...|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~ 59 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPD 59 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchh
Confidence 5677899999999999999976 24567999999999999865544444
No 77
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=87.05 E-value=1.2 Score=26.00 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCc--------cHHHHHHHHHHHHHcCC
Q 034961 20 PTAMISEIKTVYRSLAKVYHHDLSS--------NGWDFTEIHNAYETLSD 61 (78)
Q Consensus 20 ~~a~~~~Ik~ay~~~~~~~hPd~~~--------~~~~~~~i~~Ay~~L~d 61 (78)
+..+..+++.+.|..-+.+|||-.+ +++-++.++.-.+.|..
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence 3456778999999999999999763 34445555555444443
No 78
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=84.43 E-value=5 Score=22.02 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=26.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCC
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHD 41 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd 41 (78)
..|--+++|+.|-++..+|+.+-++.++++.-.
T Consensus 2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGt 34 (88)
T COG5552 2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGT 34 (88)
T ss_pred ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCC
Confidence 345567899999999999999988887776433
No 79
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=73.11 E-value=4.3 Score=14.83 Aligned_cols=13 Identities=54% Similarity=0.925 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHcC
Q 034961 48 DFTEIHNAYETLS 60 (78)
Q Consensus 48 ~~~~i~~Ay~~L~ 60 (78)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 3667777777663
No 80
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=72.82 E-value=14 Score=20.67 Aligned_cols=49 Identities=20% Similarity=0.408 Sum_probs=30.5
Q ss_pred ccCCCCC-HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHHH
Q 034961 17 RVEPTAM-ISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDM 70 (78)
Q Consensus 17 gv~~~a~-~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~ 70 (78)
|++|+.. ..+|-+.+..++..+++ ++...+..|...| +.||.-+..|+.
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~---~~~~~~~~l~~~y--~~~~~~~~~~~~ 100 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTG---GDPELLRGLAQMY--VEDPRFAAMYDK 100 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS------HHHHHHHHHHT--TSTHHHHHHHG-
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHH--HcCHHHHhhccc
Confidence 4555553 34466666667667776 3567888888888 888888888873
No 81
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=65.22 E-value=21 Score=19.58 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=26.7
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCC
Q 034961 10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLS 43 (78)
Q Consensus 10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~ 43 (78)
.|--.+.|+.|-++.++|+.+-.+.+++..--..
T Consensus 3 RnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~ 36 (78)
T PF10041_consen 3 RNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRK 36 (78)
T ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCC
Confidence 3445677899999999999999888888765444
No 82
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=62.72 E-value=17 Score=24.87 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCC
Q 034961 19 EPTAMISEIKTVYRSLAKVYHHDLS 43 (78)
Q Consensus 19 ~~~a~~~~Ik~ay~~~~~~~hPd~~ 43 (78)
+++.+.+++-+|.+..-..+|||.+
T Consensus 45 ~~~~~~~~lw~Ak~l~~Sa~HPDTg 69 (308)
T PF03820_consen 45 PPGLTDDELWKAKKLYDSAFHPDTG 69 (308)
T ss_pred CCCCCHHHHHHHHHHhhcccCCCCC
Confidence 4456899999999999999999987
No 83
>PF09938 DUF2170: Uncharacterized protein conserved in bacteria (DUF2170); InterPro: IPR019231 This family of various hypothetical prokaryotic proteins has no known function.
Probab=62.56 E-value=13 Score=22.70 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=24.1
Q ss_pred CCCCCCC----CccCcccccc-cCCCCCHHHHHHHHHHHH
Q 034961 1 MPLMAPG----MGGSLYEVLR-VEPTAMISEIKTVYRSLA 35 (78)
Q Consensus 1 m~~~~~~----~~~d~Y~iLg-v~~~a~~~~Ik~ay~~~~ 35 (78)
||+.+-+ ...+||.++| ++..++.+.|-.--..++
T Consensus 86 ~PLSs~gI~~i~g~~~Yv~FGALS~~S~l~~I~~Ei~tLa 125 (140)
T PF09938_consen 86 FPLSSFGISTIDGEDYYVAFGALSAQSSLEDIVIEIETLA 125 (140)
T ss_pred CcceeeeeeeecCcEEEEEeeeecccCCHHHHHHHHHHHH
Confidence 4554444 6789999999 688887777665544444
No 84
>COG2879 Uncharacterized small protein [Function unknown]
Probab=61.54 E-value=19 Score=19.04 Aligned_cols=27 Identities=22% Similarity=0.156 Sum_probs=18.3
Q ss_pred HHHHHHHHHhCCCCCc--cHHHHHHHHHH
Q 034961 29 TVYRSLAKVYHHDLSS--NGWDFTEIHNA 55 (78)
Q Consensus 29 ~ay~~~~~~~hPd~~~--~~~~~~~i~~A 55 (78)
..|.+-++..|||+.+ -.+-|.+-+.|
T Consensus 26 dnYVehmr~~hPd~p~mT~~EFfrec~da 54 (65)
T COG2879 26 DNYVEHMRKKHPDKPPMTYEEFFRECQDA 54 (65)
T ss_pred HHHHHHHHHhCcCCCcccHHHHHHHHHHh
Confidence 3577788999999985 34555554443
No 85
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=50.02 E-value=3.6 Score=21.58 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=20.1
Q ss_pred ccCcccccccCCCCCHHHH-HHHHHHHHHHhCCCCC
Q 034961 9 GGSLYEVLRVEPTAMISEI-KTVYRSLAKVYHHDLS 43 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~I-k~ay~~~~~~~hPd~~ 43 (78)
+.+++++||+++ +++ ...........|||..
T Consensus 5 s~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD~ 36 (91)
T PF08447_consen 5 SDNFYEIFGYSP----EEIGKPDFEEWLERIHPDDR 36 (91)
T ss_dssp -THHHHHHTS-H----HHHTCBEHHHHHHHB-TTTH
T ss_pred eHHHHHHhCCCH----HHhccCCHHHHHhhcCHHHH
Confidence 356889999854 555 4556667788999854
No 86
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=49.34 E-value=21 Score=20.30 Aligned_cols=21 Identities=38% Similarity=0.469 Sum_probs=18.3
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSLA 35 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~~ 35 (78)
+|-|+++|+..+|++|...+-
T Consensus 25 vF~V~~~AtK~~IK~AvE~lF 45 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEELF 45 (94)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 577999999999999988764
No 87
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=47.44 E-value=33 Score=19.50 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=25.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCC
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLS 43 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~ 43 (78)
...+|.||.++..+|..+|-+.-...+++.+||..
T Consensus 10 ~dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~~ 44 (93)
T cd01780 10 PDQPYAILRAPRVSTAQDVIQQTLCKARRSNPNPS 44 (93)
T ss_pred CCCCeeEEEccccccHHHHHHHHHHHhccCCCCcc
Confidence 34799999999999887765554445555677765
No 88
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=46.82 E-value=42 Score=17.35 Aligned_cols=40 Identities=13% Similarity=0.017 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHH
Q 034961 29 TVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYD 69 (78)
Q Consensus 29 ~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd 69 (78)
...+...+.-||+. +..+....|.+.|..|++..+...++
T Consensus 14 ~~~r~~~~~~~p~~-~~~eisk~l~~~Wk~ls~~eK~~y~~ 53 (72)
T cd01388 14 KRHRRKVLQEYPLK-ENRAISKILGDRWKALSNEEKQPYYE 53 (72)
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455666778975 46677888999999999776554443
No 89
>PRK10455 periplasmic protein; Reviewed
Probab=46.71 E-value=52 Score=20.31 Aligned_cols=22 Identities=14% Similarity=0.490 Sum_probs=16.4
Q ss_pred HHHHHHcCChhHHHHHHHHhHHh
Q 034961 53 HNAYETLSDPKARAVYDMSLVST 75 (78)
Q Consensus 53 ~~Ay~~L~d~~~R~~Yd~~l~~~ 75 (78)
+..|.+|+ |..|..|+..+..+
T Consensus 124 ~qiy~vLT-PEQr~q~~~~~ekr 145 (161)
T PRK10455 124 NKIYNVLT-PEQKKQFNANFEKR 145 (161)
T ss_pred HHHHHhCC-HHHHHHHHHHHHHH
Confidence 45677776 88999998777654
No 90
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=45.38 E-value=44 Score=19.54 Aligned_cols=24 Identities=13% Similarity=-0.006 Sum_probs=19.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhH
Q 034961 50 TEIHNAYETLSDPKARAVYDMSLV 73 (78)
Q Consensus 50 ~~i~~Ay~~L~d~~~R~~Yd~~l~ 73 (78)
..+.+.+.+|+||.+++.......
T Consensus 4 ~~~~~~fkaLadptRl~IL~~L~~ 27 (117)
T PRK10141 4 LLPLQLFKILSDETRLGIVLLLRE 27 (117)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455688999999999999876543
No 91
>CHL00030 rpl23 ribosomal protein L23
Probab=43.81 E-value=29 Score=19.57 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=17.6
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSL 34 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~ 34 (78)
++-|+++++..+|++|...+
T Consensus 23 ~F~V~~~anK~eIK~avE~l 42 (93)
T CHL00030 23 TFDVDSGSTKTEIKHWIELF 42 (93)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 56799999999999999776
No 92
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=43.43 E-value=90 Score=20.23 Aligned_cols=58 Identities=14% Similarity=0.048 Sum_probs=45.2
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 15 VLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
+.|.....+.++|-+..=.++..+|.|.----++-..|..=|+++.+|.....|....
T Consensus 2 L~GC~~~~~t~~iC~~nP~LC~dLn~Dg~Cr~eRtdLI~~Ry~~~~~pt~~~ky~~l~ 59 (203)
T PF11207_consen 2 LSGCFENPNTEQICENNPELCEDLNDDGWCRYERTDLIWHRYELKKNPTDKNKYQLLE 59 (203)
T ss_pred CcCcCCCCCHHHHHccCHHHHHHhCcchhhccHhHHHHHHHHHHhcCCchHHHHHHHH
Confidence 3466667788899999999999999665445566677888888888998888887554
No 93
>KOG3767 consensus Sideroflexin [General function prediction only]
Probab=41.25 E-value=36 Score=23.62 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=23.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHHhCCCCC
Q 034961 17 RVEPTAMISEIKTVYRSLAKVYHHDLS 43 (78)
Q Consensus 17 gv~~~a~~~~Ik~ay~~~~~~~hPd~~ 43 (78)
.++++.+.+++-+|.+..-..+|||.+
T Consensus 61 ~~~p~~t~~~lW~Akkl~dS~~HPDTg 87 (328)
T KOG3767|consen 61 KVPPGLTDDELWKAKKLYDSTFHPDTG 87 (328)
T ss_pred CcCCCCcHHHHHHHHHHHhcccCCCCC
Confidence 466778899999999999999999987
No 94
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=41.12 E-value=44 Score=16.63 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=18.1
Q ss_pred ccccccCCCCCHHHHHHHHHHHH
Q 034961 13 YEVLRVEPTAMISEIKTVYRSLA 35 (78)
Q Consensus 13 Y~iLgv~~~a~~~~Ik~ay~~~~ 35 (78)
|.+=|+.|..++++.|+.-|+-.
T Consensus 2 ~~~egl~pk~DPeE~k~kmR~dv 24 (51)
T PF15178_consen 2 FRIEGLGPKMDPEEMKRKMREDV 24 (51)
T ss_pred cccccCCCCCCHHHHHHHHHHHH
Confidence 45668899999999998777544
No 95
>KOG2320 consensus RAS effector RIN1 (contains VPS domain) [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.91 E-value=54 Score=24.82 Aligned_cols=37 Identities=11% Similarity=0.311 Sum_probs=27.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHc
Q 034961 18 VEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETL 59 (78)
Q Consensus 18 v~~~a~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L 59 (78)
++..+..++|+.+++.+.+.|||. ++...+.+|++.|
T Consensus 397 ~Ps~~~mEqvk~k~~~m~r~YSP~-----kkl~~Llk~ckLl 433 (651)
T KOG2320|consen 397 TPSDVLMEQVKQKFTAMQRRYSPS-----KKLHALLKACKLL 433 (651)
T ss_pred CCcHHHHHHHHHHHHHHHHhhChH-----HHHHHHHHHHHHH
Confidence 344556788999999999999995 5566666665543
No 96
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=39.77 E-value=34 Score=16.65 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=17.7
Q ss_pred ccccCCCCCHHHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSLAK 36 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~~~ 36 (78)
|=||+++++.++|+..|.....
T Consensus 3 v~nlp~~~t~~~l~~~f~~~g~ 24 (70)
T PF00076_consen 3 VGNLPPDVTEEELRDFFSQFGK 24 (70)
T ss_dssp EESETTTSSHHHHHHHHHTTST
T ss_pred EcCCCCcCCHHHHHHHHHHhhh
Confidence 4478999999999998877543
No 97
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=39.68 E-value=72 Score=21.27 Aligned_cols=32 Identities=9% Similarity=0.344 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCCh
Q 034961 25 SEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDP 62 (78)
Q Consensus 25 ~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~ 62 (78)
+.+...+.+++..+.| ..|..|.+||..|++.
T Consensus 182 ~~ld~~l~~~~~~Fd~------~~Y~~v~~AY~lLgk~ 213 (291)
T PF10475_consen 182 EQLDSDLSKVCQDFDP------DKYSKVQEAYQLLGKT 213 (291)
T ss_pred HHHHHHHHHHHHhCCH------HHHHHHHHHHHHHhhh
Confidence 4455666666666665 6799999999999965
No 98
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=37.55 E-value=14 Score=18.70 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=13.4
Q ss_pred cccccCCCCCHHHHHHHHHHHH
Q 034961 14 EVLRVEPTAMISEIKTVYRSLA 35 (78)
Q Consensus 14 ~iLgv~~~a~~~~Ik~ay~~~~ 35 (78)
+.|||++.+-...|+++-++++
T Consensus 31 ~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 31 EELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred HHhCCCHHHHHHHHHHHHHHHh
Confidence 4566666666666666666543
No 99
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=37.49 E-value=43 Score=18.17 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=17.4
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSL 34 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~ 34 (78)
.+-|+++++..+|+++...+
T Consensus 18 ~F~V~~~anK~eIK~avE~l 37 (77)
T TIGR03636 18 TFIVDRKATKGDIKRAVEKL 37 (77)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 46789999999999998776
No 100
>PF14893 PNMA: PNMA
Probab=36.87 E-value=35 Score=23.64 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=16.7
Q ss_pred cccccCCCCCHHHHHHHHHH
Q 034961 14 EVLRVEPTAMISEIKTVYRS 33 (78)
Q Consensus 14 ~iLgv~~~a~~~~Ik~ay~~ 33 (78)
-|+||+.+|+..+|..+-+.
T Consensus 22 Lv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 22 LVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred eeecCCCCCCHHHHHHHHHH
Confidence 37899999999999977654
No 101
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=36.71 E-value=49 Score=16.45 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=14.5
Q ss_pred HHHHHcCChhHHHHHHHH
Q 034961 54 NAYETLSDPKARAVYDMS 71 (78)
Q Consensus 54 ~Ay~~L~d~~~R~~Yd~~ 71 (78)
+...+|+||.++..+...
T Consensus 2 ~i~~aL~~p~R~~Il~~L 19 (61)
T PF12840_consen 2 EIFKALSDPTRLRILRLL 19 (61)
T ss_dssp HHHHHHTSHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHH
Confidence 456789999999988765
No 102
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=36.02 E-value=59 Score=15.99 Aligned_cols=37 Identities=19% Similarity=0.146 Sum_probs=26.3
Q ss_pred HHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHH
Q 034961 31 YRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYD 69 (78)
Q Consensus 31 y~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd 69 (78)
.+.....-||+. ...+....|...|..|++. .|..|.
T Consensus 15 ~r~~~~~~~p~~-~~~~i~~~~~~~W~~ls~~-eK~~y~ 51 (66)
T cd01390 15 QRPKLKKENPDA-SVTEVTKILGEKWKELSEE-EKKKYE 51 (66)
T ss_pred HHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHH-HHHHHH
Confidence 455556678873 4677889999999999965 444444
No 103
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=34.70 E-value=49 Score=18.45 Aligned_cols=20 Identities=40% Similarity=0.531 Sum_probs=17.3
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSL 34 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~ 34 (78)
.|-|++.++..+|+++...+
T Consensus 24 ~F~V~~~a~K~eIK~aie~l 43 (92)
T PRK05738 24 VFEVAPDATKPEIKAAVEKL 43 (92)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 56789999999999998766
No 104
>PRK08230 tartrate dehydratase subunit alpha; Validated
Probab=34.56 E-value=1.5e+02 Score=20.35 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHhh
Q 034961 47 WDFTEIHNAYETLSDPKARAVYDMSLVSTR 76 (78)
Q Consensus 47 ~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~~~ 76 (78)
.....+.+|++.-.+|..|..+++.+.+..
T Consensus 28 Dv~~al~~a~~~E~s~~ak~~L~~ileN~~ 57 (299)
T PRK08230 28 DVTAKLKELKDAETSPLAKIIYDTMFENQQ 57 (299)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 668889999999999999999999887653
No 105
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=34.10 E-value=88 Score=21.75 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=32.1
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHH
Q 034961 29 TVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYD 69 (78)
Q Consensus 29 ~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd 69 (78)
+..|+.+..-.|+-. +.++.++|-+-|+.|++.++|-.+|
T Consensus 75 q~~RRkma~qnP~mH-NSEISK~LG~~WK~Lse~EKrPFi~ 114 (331)
T KOG0527|consen 75 QGQRRKLAKQNPKMH-NSEISKRLGAEWKLLSEEEKRPFVD 114 (331)
T ss_pred HHHHHHHHHhCcchh-hHHHHHHHHHHHhhcCHhhhccHHH
Confidence 345666666677764 6788999999999999999998887
No 106
>PF06767 Sif: Sif protein; InterPro: IPR010637 This family consists of several SifA and SifB and SseJ proteins, which seem to be specific to the Salmonella species. SifA, SifB and SseJ have been demonstrated to localise to the Salmonella-containing vacuole (SCV) and to Salmonella-induced filaments (Sifs). Trafficking of SseJ and SifB away from the SCV requires the SPI-2 effector SifA. SseJ trafficking away from the SCV along Sifs is unnecessary for its virulence function [].; PDB: 3HW2_A 3CXB_A.
Probab=33.98 E-value=73 Score=22.22 Aligned_cols=40 Identities=13% Similarity=0.193 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHH
Q 034961 28 KTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAV 67 (78)
Q Consensus 28 k~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~ 67 (78)
.+|..-+...+||+.++..+.+..+-.+...|.-|..|..
T Consensus 44 aeA~~cI~eLc~~~~~pT~~~l~~iF~~LKeLAspg~Kd~ 83 (337)
T PF06767_consen 44 AEALECIFELCHPDPPPTRERLEDIFFELKELASPGYKDR 83 (337)
T ss_dssp HHHHHHHHHHHSSSS---HHHHHHHHHHHHHHC-HHHHTT
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCchhhhc
Confidence 3577778888999999888888888888888888887765
No 107
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=33.36 E-value=25 Score=18.91 Aligned_cols=28 Identities=14% Similarity=0.077 Sum_probs=22.5
Q ss_pred cccCCCCCHHHHHHHHHHHHHHhCCCCC
Q 034961 16 LRVEPTAMISEIKTVYRSLAKVYHHDLS 43 (78)
Q Consensus 16 Lgv~~~a~~~~Ik~ay~~~~~~~hPd~~ 43 (78)
..+..+.+.++||+.|.+......|...
T Consensus 7 ~~Lh~G~~~e~vk~~F~~~~~~Vs~~EI 34 (71)
T PF04282_consen 7 KRLHEGEDPEEVKEEFKKLFSDVSASEI 34 (71)
T ss_pred HHHhCCCCHHHHHHHHHHHHCCCCHHHH
Confidence 4567788999999999998888877644
No 108
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=32.76 E-value=71 Score=15.90 Aligned_cols=41 Identities=24% Similarity=0.206 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHHHH
Q 034961 29 TVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDMS 71 (78)
Q Consensus 29 ~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 71 (78)
...+...+.-||+.. ..+....|...|.-|++ ..|..|...
T Consensus 13 ~~~~~~~k~~~p~~~-~~~i~~~~~~~W~~l~~-~eK~~y~~~ 53 (69)
T PF00505_consen 13 KEKRAKLKEENPDLS-NKEISKILAQMWKNLSE-EEKAPYKEE 53 (69)
T ss_dssp HHHHHHHHHHSTTST-HHHHHHHHHHHHHCSHH-HHHHHHHHH
T ss_pred HHHHHHHHHHhcccc-cccchhhHHHHHhcCCH-HHHHHHHHH
Confidence 445555667789866 66778888999999884 455555443
No 109
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=32.72 E-value=92 Score=18.05 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=30.3
Q ss_pred CCCCCccCccc-----ccccCCCCCHHHHHHHHHHHHHHhC-CCCC
Q 034961 4 MAPGMGGSLYE-----VLRVEPTAMISEIKTVYRSLAKVYH-HDLS 43 (78)
Q Consensus 4 ~~~~~~~d~Y~-----iLgv~~~a~~~~Ik~ay~~~~~~~h-Pd~~ 43 (78)
++.+.+.|.|+ +|.+++.++.+++|.+-.+.+..+. |..+
T Consensus 10 lsng~~vdlydAF~Q~l~~LP~la~S~~~KD~I~q~m~~F~dp~~G 55 (120)
T PRK15321 10 LSNGGDVDLYDAFYQRLLALPESASSETLKDSIYQEMNAFKDPNSG 55 (120)
T ss_pred cCCCCcchHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHhCCCCCC
Confidence 55666677664 6789999999999998888888775 4433
No 110
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=32.05 E-value=69 Score=15.57 Aligned_cols=41 Identities=20% Similarity=0.188 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHHH
Q 034961 28 KTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDM 70 (78)
Q Consensus 28 k~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~ 70 (78)
...++...+.-||+. ...+....+...|..|++. .|..|..
T Consensus 12 ~~~~~~~~~~~~~~~-~~~~i~~~~~~~W~~l~~~-~k~~y~~ 52 (66)
T cd00084 12 SQEHRAEVKAENPGL-SVGEISKILGEMWKSLSEE-EKKKYEE 52 (66)
T ss_pred HHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHH-HHHHHHH
Confidence 344566667778873 3567788899999999965 4554543
No 111
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=31.86 E-value=39 Score=22.80 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHcC
Q 034961 46 GWDFTEIHNAYETLS 60 (78)
Q Consensus 46 ~~~~~~i~~Ay~~L~ 60 (78)
....++||+||++|.
T Consensus 127 RRRLkKVNEAFE~LK 141 (284)
T KOG3960|consen 127 RRRLKKVNEAFETLK 141 (284)
T ss_pred HHHHHHHHHHHHHHH
Confidence 366899999999863
No 112
>smart00362 RRM_2 RNA recognition motif.
Probab=30.59 E-value=64 Score=15.17 Aligned_cols=21 Identities=14% Similarity=0.368 Sum_probs=17.0
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSLA 35 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~~ 35 (78)
|-|++.+.+.++|+..+....
T Consensus 4 i~~l~~~~~~~~l~~~~~~~g 24 (72)
T smart00362 4 VGNLPPDVTEEDLKELFSKFG 24 (72)
T ss_pred EcCCCCcCCHHHHHHHHHhcC
Confidence 557889999999999887653
No 113
>PRK14102 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=30.17 E-value=40 Score=19.58 Aligned_cols=51 Identities=10% Similarity=0.158 Sum_probs=28.7
Q ss_pred CccCcccccccCCCCCH-----HHHHHHHHHHHHHhCCCCC--ccH----HHHHHHHHHHHH
Q 034961 8 MGGSLYEVLRVEPTAMI-----SEIKTVYRSLAKVYHHDLS--SNG----WDFTEIHNAYET 58 (78)
Q Consensus 8 ~~~d~Y~iLgv~~~a~~-----~~Ik~ay~~~~~~~hPd~~--~~~----~~~~~i~~Ay~~ 58 (78)
...+|++.|||+-+... =-|=+.|.......+.+.. +.. ..-..+.+||+.
T Consensus 13 sAEdFf~ff~v~YDp~vvnV~RLHILkrf~qyl~~~~~~~~~~~e~~~~~~yr~~L~~AY~d 74 (105)
T PRK14102 13 DAEDYFQFFELPYDPTVVNVNRLHILKQFSQLIAEIDANFPDLSEEEKLEKYQLALEEAYQV 74 (105)
T ss_pred cHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 34689999999865533 2355666666665343221 122 223446677774
No 114
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=29.50 E-value=69 Score=17.70 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=17.7
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSLA 35 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~~ 35 (78)
.+-|++.++..+|++|...+-
T Consensus 25 ~F~V~~~anK~eIK~AvE~lf 45 (84)
T PRK14548 25 TFIVDRRATKPDIKRAVEELF 45 (84)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 467899999999999988763
No 115
>PRK12547 RNA polymerase sigma factor; Provisional
Probab=28.80 E-value=31 Score=20.52 Aligned_cols=28 Identities=11% Similarity=0.154 Sum_probs=17.1
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHhCCC
Q 034961 14 EVLRVEPTAMISEIKTVYRSLAKVYHHD 41 (78)
Q Consensus 14 ~iLgv~~~a~~~~Ik~ay~~~~~~~hPd 41 (78)
++||++++.-...+.++-+++...+-||
T Consensus 136 ~~lgis~~tV~~~l~Rar~~Lr~~l~~~ 163 (164)
T PRK12547 136 AICGCAVGTIKSRVSRARNRLQELLKVD 163 (164)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566666666666666666666555554
No 116
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=28.63 E-value=64 Score=14.13 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhCC
Q 034961 24 ISEIKTVYRSLAKVYHH 40 (78)
Q Consensus 24 ~~~Ik~ay~~~~~~~hP 40 (78)
.++.+.+-|+.++.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 46778888999999883
No 117
>smart00360 RRM RNA recognition motif.
Probab=28.55 E-value=72 Score=14.87 Aligned_cols=20 Identities=10% Similarity=0.336 Sum_probs=16.1
Q ss_pred cccCCCCCHHHHHHHHHHHH
Q 034961 16 LRVEPTAMISEIKTVYRSLA 35 (78)
Q Consensus 16 Lgv~~~a~~~~Ik~ay~~~~ 35 (78)
-|++...+.++|+..+....
T Consensus 2 ~~l~~~~~~~~l~~~f~~~g 21 (71)
T smart00360 2 GNLPPDVTEEELRELFSKFG 21 (71)
T ss_pred CCCCcccCHHHHHHHHHhhC
Confidence 46788889999999887654
No 118
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=28.45 E-value=78 Score=15.18 Aligned_cols=15 Identities=13% Similarity=0.249 Sum_probs=11.0
Q ss_pred cHHHHHHHHHHHHHc
Q 034961 45 NGWDFTEIHNAYETL 59 (78)
Q Consensus 45 ~~~~~~~i~~Ay~~L 59 (78)
.++.-++++.|+++|
T Consensus 26 eeEt~qkL~~AF~iL 40 (41)
T PF11590_consen 26 EEETRQKLRRAFDIL 40 (41)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhh
Confidence 356677788888877
No 119
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=27.94 E-value=76 Score=17.55 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=17.5
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSLA 35 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~~ 35 (78)
.+.|+++++..+|+.+...+-
T Consensus 24 tF~V~~~atK~~Ik~aie~iy 44 (91)
T PF00276_consen 24 TFEVDPRATKTEIKEAIEKIY 44 (91)
T ss_dssp EEEETTTSTHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHhhc
Confidence 567899999999999887653
No 120
>PF12515 CaATP_NAI: Ca2+-ATPase N terminal autoinhibitory domain; InterPro: IPR024750 This entry represents the N-terminal autoinhibitory calmodulin-binding domain characteristic of certain calcium-transporting ATPases []. This domain binds calmodulin in a calcium-dependent fashion and has a conserved RRFR sequence motif. There are two completely conserved residues (F and W) that may be functionally important.; GO: 0005516 calmodulin binding
Probab=26.52 E-value=75 Score=15.74 Aligned_cols=26 Identities=12% Similarity=0.136 Sum_probs=11.2
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHH
Q 034961 45 NGWDFTEIHNAYETLSDPKARAVYDM 70 (78)
Q Consensus 45 ~~~~~~~i~~Ay~~L~d~~~R~~Yd~ 70 (78)
+.+...+-..|..+..++..|-.|-.
T Consensus 14 s~e~l~rWR~a~~lv~N~~RRFR~~~ 39 (47)
T PF12515_consen 14 SEEALRRWRQAVGLVKNARRRFRYTA 39 (47)
T ss_pred CHHHHHHHHHHhHHhccccceeeecc
Confidence 33444444444444444444444433
No 121
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=26.48 E-value=1.4e+02 Score=18.61 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=16.4
Q ss_pred HHHHHHHcCChhHHHHHHHHhHHh
Q 034961 52 IHNAYETLSDPKARAVYDMSLVST 75 (78)
Q Consensus 52 i~~Ay~~L~d~~~R~~Yd~~l~~~ 75 (78)
-+++|.+|+ |..|..|......+
T Consensus 130 ~~~~~~vLT-pEQRak~~e~~~~r 152 (170)
T PRK12750 130 RHQMLSILT-PEQKAKFQELQQER 152 (170)
T ss_pred HHHHHHhCC-HHHHHHHHHHHHHH
Confidence 345788887 88888887765443
No 122
>PF14706 Tnp_DNA_bind: Transposase DNA-binding; PDB: 3ECP_A 4DM0_A 1MUS_A 1MUH_A 1MM8_A.
Probab=26.39 E-value=1e+02 Score=15.77 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=23.4
Q ss_pred HHHHHHHHHHH--HhCCCCC--ccHHHHHHHHHHHHHcCChh
Q 034961 26 EIKTVYRSLAK--VYHHDLS--SNGWDFTEIHNAYETLSDPK 63 (78)
Q Consensus 26 ~Ik~ay~~~~~--~~hPd~~--~~~~~~~~i~~Ay~~L~d~~ 63 (78)
-+.+....++. .-+|... .+-+....+..||+.|.+|.
T Consensus 16 Rl~~Rl~~l~~~la~~p~~Sip~a~~~wa~tkaAYRF~~N~~ 57 (58)
T PF14706_consen 16 RLTRRLVKLAESLAEKPGASIPQACQDWAETKAAYRFFRNPR 57 (58)
T ss_dssp HHHHHHHHHHHHHHHTTTS-HHHHTT-HHHHHHHHHHHT-TT
T ss_pred hHHHHHHHHHHHHHHCCCCccchhccCHHHHHHHHHhhcCCC
Confidence 35566666655 4477765 23445777889999998873
No 123
>PF06975 DUF1299: Protein of unknown function (DUF1299); InterPro: IPR010725 This entry represents a conserved region approximately 50 residues long within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that many proteins contain multiple copies of this region.
Probab=26.18 E-value=15 Score=17.80 Aligned_cols=11 Identities=45% Similarity=0.643 Sum_probs=8.9
Q ss_pred HHHHHHcCChh
Q 034961 53 HNAYETLSDPK 63 (78)
Q Consensus 53 ~~Ay~~L~d~~ 63 (78)
++||-+|||..
T Consensus 10 qeayvilsdde 20 (47)
T PF06975_consen 10 QEAYVILSDDE 20 (47)
T ss_pred hhheeeccccc
Confidence 68999999864
No 124
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=26.05 E-value=99 Score=16.61 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=7.3
Q ss_pred HHHHHHHHHhCCC
Q 034961 29 TVYRSLAKVYHHD 41 (78)
Q Consensus 29 ~ay~~~~~~~hPd 41 (78)
+.|..++..+.-.
T Consensus 58 ~~W~~va~~lg~~ 70 (92)
T PF01388_consen 58 KKWREVARKLGFP 70 (92)
T ss_dssp TTHHHHHHHTTS-
T ss_pred chHHHHHHHhCCC
Confidence 3477777766443
No 125
>TIGR00798 mtc tricarboxylate carrier. The MTC family consists of a limited number of homologues, all from eukaryotes. A single member of the family has been functionally characterized, the tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism.
Probab=26.03 E-value=1.8e+02 Score=20.22 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=17.7
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCC
Q 034961 20 PTAMISEIKTVYRSLAKVYHHDLS 43 (78)
Q Consensus 20 ~~a~~~~Ik~ay~~~~~~~hPd~~ 43 (78)
+..+.+++-+|-+-.-..+|||.+
T Consensus 54 ~~~t~~~lW~Akk~~dS~~HPDTG 77 (318)
T TIGR00798 54 SPLTVDELWRAKKLYDSAFHPDTG 77 (318)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCC
Confidence 445556777777777778999987
No 126
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=25.13 E-value=1.1e+02 Score=18.95 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHHHHcCChhHHH
Q 034961 45 NGWDFTEIHNAYETLSDPKARA 66 (78)
Q Consensus 45 ~~~~~~~i~~Ay~~L~d~~~R~ 66 (78)
.+.....|.++.++|.||.++.
T Consensus 64 etkrLa~ireeLE~l~dP~RkE 85 (159)
T PF04949_consen 64 ETKRLAEIREELEVLADPMRKE 85 (159)
T ss_pred HHHHHHHHHHHHHhhccchHHH
Confidence 4677888999999999997765
No 127
>PRK09649 RNA polymerase sigma factor SigC; Reviewed
Probab=24.92 E-value=38 Score=20.71 Aligned_cols=28 Identities=14% Similarity=0.046 Sum_probs=15.7
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHhCCC
Q 034961 14 EVLRVEPTAMISEIKTVYRSLAKVYHHD 41 (78)
Q Consensus 14 ~iLgv~~~a~~~~Ik~ay~~~~~~~hPd 41 (78)
++||+++++-...+.++-.++..-..||
T Consensus 154 ~~lgis~~tVk~~l~Rar~~Lr~~~~~~ 181 (185)
T PRK09649 154 AVCGCPVGTIRSRVARARDALLADAEPD 181 (185)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhhCCcc
Confidence 3566666555555555555555544554
No 128
>PRK15389 fumarate hydratase; Provisional
Probab=24.85 E-value=1.5e+02 Score=22.20 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=34.9
Q ss_pred cccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHH-HHcCChhHHHHHHHHhHHhh
Q 034961 16 LRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAY-ETLSDPKARAVYDMSLVSTR 76 (78)
Q Consensus 16 Lgv~~~a~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay-~~L~d~~~R~~Yd~~l~~~~ 76 (78)
|.|++..-.+.+..++.+.+. .+|+ +....|.+|| +.=.+|..|..+++.+.+..
T Consensus 39 ~~v~~~~i~~~v~~l~~~a~~-~lp~-----Dv~~aL~~a~~~~E~s~~ak~vl~~ileN~~ 94 (536)
T PRK15389 39 LKVEPEALTLLAEEAFHDISH-LLRP-----AHLQQLAKILDDPEASDNDKFVALDLLKNAN 94 (536)
T ss_pred EEECHHHHHHHHHHHHHHHHh-hCCH-----HHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 334333333444455554443 4554 5678889996 66778999999999887653
No 129
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=24.76 E-value=92 Score=14.65 Aligned_cols=20 Identities=10% Similarity=0.370 Sum_probs=16.8
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSL 34 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~ 34 (78)
|-|++.+.+.++|+..+...
T Consensus 4 i~~l~~~~~~~~i~~~~~~~ 23 (74)
T cd00590 4 VGNLPPDVTEEDLRELFSKF 23 (74)
T ss_pred EeCCCCccCHHHHHHHHHhc
Confidence 45888999999999988875
No 130
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=24.53 E-value=3.1e+02 Score=20.60 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCC
Q 034961 19 EPTAMISEIKTVYRSLAKVYHHDLS 43 (78)
Q Consensus 19 ~~~a~~~~Ik~ay~~~~~~~hPd~~ 43 (78)
+..++..+|...|.++++-++-|..
T Consensus 185 ~~s~~EkEvE~~F~~lsL~f~~D~~ 209 (538)
T PF05781_consen 185 PGSASEKEVEAEFLRLSLGFKCDRF 209 (538)
T ss_pred CCCCcHHHHHHHHHHHHHHhhhhhh
Confidence 3455899999999999999999987
No 131
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=24.01 E-value=50 Score=16.39 Aligned_cols=18 Identities=6% Similarity=0.440 Sum_probs=12.5
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 034961 17 RVEPTAMISEIKTVYRSL 34 (78)
Q Consensus 17 gv~~~a~~~~Ik~ay~~~ 34 (78)
||+++++.++|+..+...
T Consensus 5 nlp~~~~~~~l~~~f~~~ 22 (70)
T PF14259_consen 5 NLPPSTTEEDLRNFFSRF 22 (70)
T ss_dssp SSTTT--HHHHHHHCTTS
T ss_pred CCCCCCCHHHHHHHHHhc
Confidence 688889999998876653
No 132
>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]
Probab=23.91 E-value=1.9e+02 Score=17.92 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHh
Q 034961 48 DFTEIHNAYETLSDPKARAVYDMSLVST 75 (78)
Q Consensus 48 ~~~~i~~Ay~~L~d~~~R~~Yd~~l~~~ 75 (78)
.++.-+..|.||. |+.|..+...+...
T Consensus 120 r~k~~~~m~~vLT-PEQr~~l~~~~~~r 146 (160)
T COG3678 120 RVKSDNQMYQVLT-PEQRAKLQELLAQR 146 (160)
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHHH
Confidence 3555567888888 88888777666543
No 133
>PRK09498 sifA secreted effector protein SifA; Reviewed
Probab=23.57 E-value=2.2e+02 Score=19.79 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHH
Q 034961 29 TVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVY 68 (78)
Q Consensus 29 ~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Y 68 (78)
+|..=+...+||+..+..+....+.+....|.-|..|..+
T Consensus 45 eA~~CI~eLchp~~~~trE~i~~~F~~Lk~LA~p~y~dnf 84 (336)
T PRK09498 45 KADRCLHEMLFADRAPTRERLTEIFFELKELACASQRDRF 84 (336)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCchhhhce
Confidence 4556667789999998777777777777788888776543
No 134
>smart00427 H2B Histone H2B.
Probab=23.44 E-value=1.1e+02 Score=17.27 Aligned_cols=12 Identities=25% Similarity=0.230 Sum_probs=9.5
Q ss_pred HHHHHHhCCCCC
Q 034961 32 RSLAKVYHHDLS 43 (78)
Q Consensus 32 ~~~~~~~hPd~~ 43 (78)
.+..++.|||.+
T Consensus 8 ~kvLKqVhpd~g 19 (89)
T smart00427 8 YKVLKQVHPDTG 19 (89)
T ss_pred HHHHHHhCCCcc
Confidence 456788999986
No 135
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=23.32 E-value=75 Score=17.31 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=16.4
Q ss_pred CCccCcccccccCCCCCHHHHH
Q 034961 7 GMGGSLYEVLRVEPTAMISEIK 28 (78)
Q Consensus 7 ~~~~d~Y~iLgv~~~a~~~~Ik 28 (78)
+...-+|.+|.|+..+....+-
T Consensus 11 sDp~~p~kv~sVPE~apftaVl 32 (76)
T PF03671_consen 11 SDPKLPYKVISVPEEAPFTAVL 32 (76)
T ss_dssp TSSTS-EEEEEEETTSBHHHHH
T ss_pred cCCCCcceEEecCCCCchHHHH
Confidence 3456789999999999887643
No 136
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=23.25 E-value=88 Score=22.39 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=18.7
Q ss_pred HHHHcCChhHHHHHHHHhHHhhc
Q 034961 55 AYETLSDPKARAVYDMSLVSTRR 77 (78)
Q Consensus 55 Ay~~L~d~~~R~~Yd~~l~~~~~ 77 (78)
.-.||+||..|+.+.+.+...++
T Consensus 294 va~IL~~p~Lra~W~~El~~Mr~ 316 (396)
T COG1448 294 VATILNNPELRAEWEQELEEMRQ 316 (396)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHH
Confidence 34589999999999999877653
No 137
>PF03172 Sp100: Sp100 domain; InterPro: IPR004865 The Sp100 and promyelocytic leukemia proteins (PML) are constituents of nuclear domains, known as nuclear dots (NDs or NBs - nuclear bodies or PML bodies), and are both covalently modified by the small ubiquitin-related protein SUMO-1. NBs play a role in autoimmunity, virus infections, and in the etiology of acute promyelocytic leukemia []. A functional nuclear localization signal and an NB-targeting region that coincides with an Sp100 homodimerization domain have been mapped. Sequences similar to the Sp100 homodimerization/ND-targeting region occur in several other proteins, which include the autoimmune regulator proteins (AIRE) and other numerous other transiently or permanently localised proteins. PML is expressed as a family of isoforms (PML I-VII) as a result of alternative splicing, most of which are found in the nucleus. Although there are many other functions of PML NBs in a wide range of cellular pathways, there is accumulating evidence that they represent preferential targets for viral infections and that PML plays a role in the mechanism of the antiviral action of interferon []. The Sp100 domain is usually found at the amino terminus of proteins that contain a SAND domain IPR000770 from INTERPRO. ; GO: 0005634 nucleus
Probab=22.12 E-value=1.5e+02 Score=17.21 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=19.9
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHH
Q 034961 45 NGWDFTEIHNAYETLSDPKARAVYD 69 (78)
Q Consensus 45 ~~~~~~~i~~Ay~~L~d~~~R~~Yd 69 (78)
.++.|+...+|++.|- |..|..|+
T Consensus 38 tE~~y~e~~e~crnlv-pv~rvvY~ 61 (103)
T PF03172_consen 38 TEQMYKESQEACRNLV-PVQRVVYN 61 (103)
T ss_pred cHHHHHHHHHHHhccc-cHHHHHHH
Confidence 4678999999988865 88888887
No 138
>PRK15390 fumarate hydratase FumA; Provisional
Probab=22.04 E-value=1.7e+02 Score=21.96 Aligned_cols=55 Identities=11% Similarity=0.165 Sum_probs=35.3
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHH-HHHHcCChhHHHHHHHHhHHh
Q 034961 15 VLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHN-AYETLSDPKARAVYDMSLVST 75 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~-Ay~~L~d~~~R~~Yd~~l~~~ 75 (78)
+|.|+|.+-..-++++++..+..+-|| ....|.+ +++.=.++..|..+++.|.+.
T Consensus 39 ~l~v~~~~l~~~~~~~~~~a~~~L~~d------v~~~l~~~~~d~E~s~~~k~vl~~lL~Na 94 (548)
T PRK15390 39 ILKVAPEALTLLARQAFHDASFMLRPA------HQQQVADILRDPEASENDKYVALQFLRNS 94 (548)
T ss_pred EEEECHHHHHHHHHHHHHHHhhhCCHH------HHHHHHHHhhCccCCHHHHHHHHHHHHHH
Confidence 344555555555667777766666553 4556666 445666778888888888764
No 139
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=21.94 E-value=87 Score=18.07 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=18.7
Q ss_pred HHHHhCCCCCccHHHHHHHHHHHHH
Q 034961 34 LAKVYHHDLSSNGWDFTEIHNAYET 58 (78)
Q Consensus 34 ~~~~~hPd~~~~~~~~~~i~~Ay~~ 58 (78)
+...+||+..........|..||..
T Consensus 62 vv~i~~~~~~~~~~~i~~Ir~~Yk~ 86 (104)
T PF12098_consen 62 VVIIVHPDTPAAEARIEAIREAYKQ 86 (104)
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHH
Confidence 3456788877777888888888864
No 140
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=21.89 E-value=1.8e+02 Score=18.09 Aligned_cols=22 Identities=14% Similarity=0.350 Sum_probs=15.8
Q ss_pred HHHHHHcCChhHHHHHHHHhHHh
Q 034961 53 HNAYETLSDPKARAVYDMSLVST 75 (78)
Q Consensus 53 ~~Ay~~L~d~~~R~~Yd~~l~~~ 75 (78)
++-|.+|+ |+.|..|......+
T Consensus 124 ~qmy~lLT-PEQra~l~~~~e~r 145 (162)
T PRK12751 124 NQMYNLLT-PEQKEALNKKHQER 145 (162)
T ss_pred HHHHHcCC-HHHHHHHHHHHHHH
Confidence 55677776 88888888766544
No 141
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=21.41 E-value=92 Score=17.47 Aligned_cols=12 Identities=25% Similarity=0.531 Sum_probs=8.9
Q ss_pred CHHHHHHHHHHH
Q 034961 23 MISEIKTVYRSL 34 (78)
Q Consensus 23 ~~~~Ik~ay~~~ 34 (78)
.+..|++||++|
T Consensus 79 ~P~hlreA~rrL 90 (90)
T PF04719_consen 79 QPDHLREAYRRL 90 (90)
T ss_dssp -HHHHHHHHHHH
T ss_pred CcHHHHHHHHhC
Confidence 567788888875
No 142
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=21.40 E-value=1.1e+02 Score=18.82 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=15.8
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSL 34 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~ 34 (78)
+|-|++.++..+|++|...+
T Consensus 86 vF~Vd~kAnK~qIK~AVEkl 105 (145)
T PTZ00191 86 VFIVDQRANKTQIKKAVEKL 105 (145)
T ss_pred EEEEcCCCCHHHHHHHHHHH
Confidence 34577888999999888776
No 143
>PF09598 Stm1_N: Stm1; InterPro: IPR019084 This domain is found at the N-terminal region of the Stm1 protein. Stm1 is a G4 quadraplex and purine motif triplex nucleic acid-binding protein. It has been implicated in many biological processes including apoptosis and telomere biosynthesis. Stm1 is known to interact with CDC13 [], and is known to associate with ribosomes and nuclear telomere cap complexes []. ; PDB: 3U5G_h 3U5C_h.
Probab=21.40 E-value=31 Score=18.36 Aligned_cols=11 Identities=9% Similarity=0.332 Sum_probs=0.0
Q ss_pred CcccccccCCC
Q 034961 11 SLYEVLRVEPT 21 (78)
Q Consensus 11 d~Y~iLgv~~~ 21 (78)
|+|++||=...
T Consensus 1 N~FdLLGnD~e 11 (68)
T PF09598_consen 1 NPFDLLGNDDE 11 (68)
T ss_dssp -----------
T ss_pred CchhhcCCCcc
Confidence 67999996543
No 144
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=21.12 E-value=1.3e+02 Score=17.52 Aligned_cols=26 Identities=12% Similarity=-0.015 Sum_probs=18.3
Q ss_pred cccCCCCCHHHHHHHHHHHHHHhCCC
Q 034961 16 LRVEPTAMISEIKTVYRSLAKVYHHD 41 (78)
Q Consensus 16 Lgv~~~a~~~~Ik~ay~~~~~~~hPd 41 (78)
+|..++++.++|..+..+.....+-+
T Consensus 6 iGcrr~~~~~~i~~ai~~~l~~~~~~ 31 (121)
T PF01890_consen 6 IGCRRGAPAEEIEEAIEQALAEAGLS 31 (121)
T ss_dssp EEE-SS--HHHHHHHHHHHHHHCT--
T ss_pred eCcCCCCCHHHHHHHHHHHHHHcCCC
Confidence 56789999999999999999985544
No 145
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=21.04 E-value=69 Score=22.53 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHh
Q 034961 47 WDFTEIHNAYETLSDPKARAVYDMSLVST 75 (78)
Q Consensus 47 ~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~~ 75 (78)
-+.+.+..-..-|+++..|..|..+|...
T Consensus 191 vkCqnL~aLlHELSNeGAR~QFe~fLEe~ 219 (438)
T KOG3840|consen 191 VKCQNLHALLHELSNEGAREQFSQFLEEI 219 (438)
T ss_pred eeehhHHHHHHHhcchhHHHHHHHHHHHH
Confidence 34666777777899999999999998753
No 146
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=20.93 E-value=1.1e+02 Score=15.12 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=4.0
Q ss_pred HHHHHHHhCCC
Q 034961 31 YRSLAKVYHHD 41 (78)
Q Consensus 31 y~~~~~~~hPd 41 (78)
|+++-+...||
T Consensus 33 FkqIHk~~~~d 43 (47)
T PF02208_consen 33 FKQIHKLHKPD 43 (47)
T ss_pred HHHHHhhcccc
Confidence 33333333333
No 147
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=20.74 E-value=1.3e+02 Score=18.91 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=17.5
Q ss_pred ccccCCCCCHHHHHHH---HHHHHHHhCCCCC
Q 034961 15 VLRVEPTAMISEIKTV---YRSLAKVYHHDLS 43 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~a---y~~~~~~~hPd~~ 43 (78)
+|.+.++.+.++++.+ |-+..+.-||+..
T Consensus 64 ~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tP 95 (178)
T PF14606_consen 64 VLDCGPNMSPEEFRERLDGFVKTIREAHPDTP 95 (178)
T ss_dssp EEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-
T ss_pred EEEeecCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4555555677777765 4555667799986
No 148
>PRK10613 hypothetical protein; Provisional
Probab=20.74 E-value=40 Score=18.27 Aligned_cols=11 Identities=36% Similarity=0.736 Sum_probs=7.8
Q ss_pred CHHHHHHHHHH
Q 034961 23 MISEIKTVYRS 33 (78)
Q Consensus 23 ~~~~Ik~ay~~ 33 (78)
+.++||.+||+
T Consensus 64 Tv~QIK~aYRq 74 (74)
T PRK10613 64 TVKQIKQAYRQ 74 (74)
T ss_pred HHHHHHHHhcC
Confidence 45678888873
No 149
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=20.37 E-value=1.2e+02 Score=16.69 Aligned_cols=21 Identities=14% Similarity=0.184 Sum_probs=16.8
Q ss_pred CCccCcccccccCCCCCHHHH
Q 034961 7 GMGGSLYEVLRVEPTAMISEI 27 (78)
Q Consensus 7 ~~~~d~Y~iLgv~~~a~~~~I 27 (78)
+...-+|.+|.|+..+....+
T Consensus 11 Sdp~lpfkvlsVpE~aPftAv 31 (82)
T cd01766 11 SDPKLPFKVLSVPESTPFTAV 31 (82)
T ss_pred CCCCCcceEEeccccCchHHH
Confidence 445679999999999987664
No 150
>PF00880 Nebulin: Nebulin repeat; InterPro: IPR000900 Nebulin is a 600-800kDa protein found in the thin filaments of striated vertebrate muscle. It is presumed to play a role in binding and stabilising F-actin [], essentially by providing a template for actin polymerisation (i.e., acting as an "actin zipper"). The amino acid sequence shows a uniform repeating pattern along its length, a repeated 35-residue motif constituting up to 97% of the polypeptide. Analysis of individual repeats reveals a progressive N- to C-terminal divergence, coupled with an increasing alpha-helix propensity. This correlates with a higher binding affinity for F-actin at the C terminus. Thus, it is postulated that once the repeats have formed an initiation complex, the whole length of the nebulin molecule may then associate in a highly co-operative process with the thin filament, in a manner similar to the closing of a zipper [].
Probab=20.22 E-value=94 Score=13.04 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHH
Q 034961 48 DFTEIHNAYETLSDPKARAVYDMS 71 (78)
Q Consensus 48 ~~~~i~~Ay~~L~d~~~R~~Yd~~ 71 (78)
.+....++..++|+-.-|..|+..
T Consensus 4 ~~~~ak~~~~~~Sd~~Yk~~~ek~ 27 (29)
T PF00880_consen 4 EMVHAKKAAQLQSDVKYKEDYEKS 27 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356677888889988888888754
No 151
>COG4339 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.15 E-value=9.3 Score=24.32 Aligned_cols=42 Identities=24% Similarity=0.285 Sum_probs=28.3
Q ss_pred CCCCCCCCccCcccccccCCCC-CHHHHHHHHHHHHHHhCCCC
Q 034961 1 MPLMAPGMGGSLYEVLRVEPTA-MISEIKTVYRSLAKVYHHDL 42 (78)
Q Consensus 1 m~~~~~~~~~d~Y~iLgv~~~a-~~~~Ik~ay~~~~~~~hPd~ 42 (78)
||.+....-+...+.||+++.+ -+..+-.+|..-.+-||.++
T Consensus 1 m~t~~~~~wq~l~q~lg~~~~~~~f~~L~aaY~~~dRHYH~l~ 43 (208)
T COG4339 1 MPTAEDYQWQQLLQNLGVDKTTQVFTHLIAAYSSPDRHYHTLK 43 (208)
T ss_pred CccHHHHhHHHHHHHhcCCCchHHHHHHHHHhcCCccchhhHH
Confidence 5666555555677888998765 35667777777666666664
No 152
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=20.03 E-value=1.5e+02 Score=16.71 Aligned_cols=27 Identities=22% Similarity=0.117 Sum_probs=19.5
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHHhC
Q 034961 13 YEVLRVEPTAMISEIKTVYRSLAKVYH 39 (78)
Q Consensus 13 Y~iLgv~~~a~~~~Ik~ay~~~~~~~h 39 (78)
--|.+++.+.+...|+..-++++-.|-
T Consensus 5 L~V~NLP~~~d~~~I~~RL~qLsdNCG 31 (90)
T PF11608_consen 5 LYVSNLPTNKDPSSIKNRLRQLSDNCG 31 (90)
T ss_dssp EEEES--TTS-HHHHHHHHHHHHHTTT
T ss_pred EEEecCCCCCCHHHHHHHHHHHhhccC
Confidence 346788888999999999999988764
Done!