Query 034961
Match_columns 78
No_of_seqs 141 out of 1047
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 13:08:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034961.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034961hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hdj_A Human HSP40, HDJ-1; mol 99.9 6.8E-25 2.3E-29 119.7 6.9 68 8-75 1-71 (77)
2 2dn9_A DNAJ homolog subfamily 99.9 1.1E-24 3.9E-29 119.2 6.5 69 6-74 3-75 (79)
3 2ctp_A DNAJ homolog subfamily 99.9 9.3E-25 3.2E-29 119.4 6.0 69 6-74 3-74 (78)
4 2ctr_A DNAJ homolog subfamily 99.9 2.1E-24 7.2E-29 120.5 7.0 70 6-75 3-75 (88)
5 2och_A Hypothetical protein DN 99.9 2.2E-24 7.4E-29 116.7 6.8 64 9-72 7-71 (73)
6 2yua_A Williams-beuren syndrom 99.9 2.6E-24 8.9E-29 122.4 7.2 68 6-73 13-84 (99)
7 2o37_A Protein SIS1; HSP40, J- 99.9 5.6E-24 1.9E-28 119.6 7.5 68 8-75 6-74 (92)
8 2ctq_A DNAJ homolog subfamily 99.9 7.2E-24 2.5E-28 122.9 8.0 69 7-75 17-89 (112)
9 2cug_A Mkiaa0962 protein; DNAJ 99.9 1E-23 3.4E-28 117.7 7.9 68 7-74 14-84 (88)
10 1wjz_A 1700030A21RIK protein; 99.9 2.3E-24 7.8E-29 121.3 4.9 68 7-74 13-90 (94)
11 2ej7_A HCG3 gene; HCG3 protein 99.9 6.9E-24 2.3E-28 116.8 6.1 68 6-73 5-77 (82)
12 2ctw_A DNAJ homolog subfamily 99.9 2.7E-23 9.2E-28 120.0 8.2 69 6-74 13-85 (109)
13 2lgw_A DNAJ homolog subfamily 99.9 2E-23 7E-28 118.8 6.9 65 10-74 2-71 (99)
14 2l6l_A DNAJ homolog subfamily 99.9 2.6E-23 8.8E-28 126.2 7.7 71 4-74 4-84 (155)
15 2dmx_A DNAJ homolog subfamily 99.9 3E-23 1E-27 116.5 6.5 67 7-73 6-77 (92)
16 2qsa_A DNAJ homolog DNJ-2; J-d 99.9 2.4E-23 8.1E-28 120.1 5.8 67 8-74 13-87 (109)
17 1bq0_A DNAJ, HSP40; chaperone, 99.9 1E-23 3.6E-28 120.6 1.8 66 9-74 2-71 (103)
18 3hho_A CO-chaperone protein HS 99.9 7E-22 2.4E-26 122.0 6.1 66 9-74 3-79 (174)
19 2ys8_A RAB-related GTP-binding 99.8 6.5E-22 2.2E-26 110.8 4.1 58 9-66 26-86 (90)
20 3apq_A DNAJ homolog subfamily 99.8 1.4E-21 4.7E-26 122.0 5.9 65 10-74 2-70 (210)
21 1faf_A Large T antigen; J doma 99.8 1.4E-22 4.8E-27 111.2 1.2 61 8-68 9-71 (79)
22 2pf4_E Small T antigen; PP2A, 99.8 3.2E-23 1.1E-27 128.0 -2.7 69 4-72 5-75 (174)
23 1fpo_A HSC20, chaperone protei 99.8 1.9E-21 6.6E-26 119.8 4.9 64 11-74 2-76 (171)
24 3bvo_A CO-chaperone protein HS 99.8 7.7E-21 2.6E-25 120.1 6.7 68 7-74 40-118 (207)
25 1gh6_A Large T antigen; tumor 99.8 7.6E-23 2.6E-27 119.1 -2.6 62 9-70 7-70 (114)
26 3uo3_A J-type CO-chaperone JAC 99.8 1.3E-20 4.3E-25 117.1 4.9 68 5-72 6-81 (181)
27 2guz_A Mitochondrial import in 99.8 5.7E-21 1.9E-25 102.9 2.8 57 9-65 13-70 (71)
28 3lz8_A Putative chaperone DNAJ 99.8 1.5E-21 5.2E-26 130.2 0.0 64 9-72 27-93 (329)
29 1iur_A KIAA0730 protein; DNAJ 99.8 2.8E-20 9.6E-25 103.9 2.0 59 7-65 13-76 (88)
30 1n4c_A Auxilin; four helix bun 99.8 5E-20 1.7E-24 114.4 1.1 59 10-68 117-182 (182)
31 3ag7_A Putative uncharacterize 99.8 4.3E-19 1.5E-23 102.0 3.9 54 9-63 40-104 (106)
32 2qwo_B Putative tyrosine-prote 99.7 6.7E-19 2.3E-23 99.0 2.3 52 10-61 33-91 (92)
33 3apo_A DNAJ homolog subfamily 99.7 3.6E-19 1.2E-23 127.4 -0.1 68 6-73 17-88 (780)
34 2guz_B Mitochondrial import in 99.4 1.1E-13 3.7E-18 73.2 4.3 52 11-62 5-59 (65)
35 2y4t_A DNAJ homolog subfamily 99.3 8.8E-13 3E-17 86.9 4.4 62 10-71 382-450 (450)
36 2pzi_A Probable serine/threoni 94.4 0.039 1.3E-06 39.1 3.8 46 9-58 628-675 (681)
37 2b7e_A PRE-mRNA processing pro 58.6 16 0.00054 18.3 5.1 50 25-74 3-58 (59)
38 2d7l_A WD repeat and HMG-box D 58.0 18 0.00062 18.8 4.0 42 28-70 17-58 (81)
39 2lxi_A RNA-binding protein 10; 48.1 17 0.00059 18.7 2.7 21 15-35 6-26 (91)
40 1qqr_A Streptokinase domain B; 47.4 12 0.00042 21.8 2.1 30 12-41 34-63 (138)
41 3bbz_A P protein, phosphoprote 45.8 25 0.00087 16.9 2.9 27 49-75 5-31 (49)
42 1ug2_A 2610100B20RIK gene prod 43.7 18 0.00063 19.8 2.3 22 21-42 67-88 (95)
43 4a3n_A Transcription factor SO 41.2 32 0.0011 16.7 5.1 41 28-70 14-54 (71)
44 1vq8_S 50S ribosomal protein L 39.9 25 0.00086 18.7 2.5 21 15-35 26-46 (85)
45 2yrq_A High mobility group pro 39.0 57 0.002 18.9 5.4 39 28-66 27-66 (173)
46 1iqt_A AUF1, heterogeneous nuc 38.3 32 0.0011 16.4 2.7 19 16-34 5-23 (75)
47 3r8s_T 50S ribosomal protein L 37.4 28 0.00097 18.8 2.5 20 15-34 31-50 (93)
48 2zjr_Q 50S ribosomal protein L 36.6 29 0.00099 18.8 2.5 21 15-35 26-46 (95)
49 3j21_T 50S ribosomal protein L 35.6 32 0.0011 18.3 2.5 20 15-34 27-46 (86)
50 3tve_T 50S ribosomal protein L 34.3 34 0.0012 18.4 2.5 20 15-34 25-44 (92)
51 1cf7_A Protein (transcription 34.3 26 0.00089 18.1 1.9 42 21-69 9-50 (76)
52 1i11_A Transcription factor SO 31.7 54 0.0018 16.5 4.5 40 29-69 17-56 (81)
53 2py6_A Methyltransferase FKBM; 31.5 61 0.0021 21.6 3.9 28 48-75 170-197 (409)
54 2xpn_B SPT6, chromatin structu 31.4 11 0.00038 15.5 0.1 10 11-20 4-13 (26)
55 3f27_D Transcription factor SO 31.3 55 0.0019 16.4 5.4 41 28-70 18-58 (83)
56 3nm9_A HMG-D, high mobility gr 30.8 53 0.0018 16.1 5.0 39 28-70 15-53 (73)
57 2hzc_A Splicing factor U2AF 65 30.7 49 0.0017 16.2 2.7 21 15-35 11-31 (87)
58 3oeo_A Spheroplast protein Y; 30.6 31 0.0011 19.8 2.0 26 49-75 97-122 (138)
59 2eqz_A High mobility group pro 29.5 62 0.0021 16.5 5.3 40 29-69 28-68 (86)
60 1aab_A High mobility group pro 29.5 57 0.002 16.4 2.8 38 29-66 20-58 (83)
61 3tmm_A Transcription factor A, 28.8 1.1E+02 0.0036 19.0 5.2 38 29-67 54-91 (238)
62 1ckt_A High mobility group 1 p 28.5 57 0.002 15.8 5.7 39 30-68 15-54 (71)
63 2mss_A Protein (musashi1); RNA 28.4 39 0.0014 16.1 2.0 19 16-34 5-23 (75)
64 2vkj_A TM1634; membrane protei 27.2 83 0.0028 17.2 3.2 22 47-68 11-34 (106)
65 3tq6_A Transcription factor A, 26.8 1.1E+02 0.0038 18.6 5.3 38 29-67 22-59 (214)
66 2lef_A LEF-1 HMG, protein (lym 26.8 70 0.0024 16.2 4.2 40 29-70 15-54 (86)
67 2lkz_A RNA-binding protein 5; 26.6 31 0.0011 18.0 1.5 21 15-35 14-34 (95)
68 2cqn_A Formin-binding protein 26.1 75 0.0026 16.3 5.2 52 22-74 6-64 (77)
69 1wgf_A Upstream binding factor 26.0 76 0.0026 16.4 6.2 42 28-71 32-73 (90)
70 1gt0_D Transcription factor SO 25.8 70 0.0024 15.9 4.4 40 29-70 15-54 (80)
71 2lr8_A CAsp8-associated protei 31.6 15 0.0005 19.1 0.0 21 21-41 47-67 (70)
72 2cs1_A PMS1 protein homolog 1; 25.4 78 0.0027 16.3 4.6 39 29-69 20-58 (92)
73 2dnp_A RNA-binding protein 14; 25.1 70 0.0024 15.9 2.7 20 15-34 14-33 (90)
74 2crj_A SWI/SNF-related matrix- 24.9 81 0.0028 16.3 6.1 38 29-67 20-57 (92)
75 1wz6_A HMG-box transcription f 24.7 76 0.0026 15.9 5.1 41 28-70 19-59 (82)
76 2hvz_A Splicing factor, argini 24.3 70 0.0024 16.2 2.7 19 16-34 6-24 (101)
77 2dhg_A TRNA selenocysteine ass 24.3 66 0.0023 16.4 2.5 19 15-33 14-32 (104)
78 2div_A TRNA selenocysteine ass 24.2 67 0.0023 16.2 2.5 21 15-35 14-34 (99)
79 1hme_A High mobility group pro 24.1 75 0.0026 15.6 5.9 37 29-66 19-55 (77)
80 1fj7_A Nucleolin RBD1, protein 23.8 73 0.0025 16.2 2.7 25 15-39 22-46 (101)
81 2dgp_A Bruno-like 4, RNA bindi 23.7 75 0.0026 16.2 2.7 21 15-35 18-38 (106)
82 1uaw_A Mouse-musashi-1; RNP-ty 23.6 40 0.0014 16.1 1.5 19 16-34 6-24 (77)
83 3bs9_A Nucleolysin TIA-1 isofo 23.6 59 0.002 15.9 2.2 20 15-34 11-30 (87)
84 4fxv_A ELAV-like protein 1; RN 23.4 52 0.0018 17.1 2.0 20 15-34 24-43 (99)
85 1x5s_A Cold-inducible RNA-bind 23.2 78 0.0027 16.0 2.7 20 15-34 17-36 (102)
86 3md1_A Nuclear and cytoplasmic 23.0 62 0.0021 15.6 2.2 20 15-34 6-25 (83)
87 1iqo_A Hypothetical protein MT 22.8 88 0.003 16.8 2.8 34 8-41 46-79 (88)
88 2dgu_A Heterogeneous nuclear r 22.7 81 0.0028 16.1 2.7 20 15-34 16-35 (103)
89 2ytc_A PRE-mRNA-splicing facto 22.6 56 0.0019 15.9 2.0 20 15-34 17-36 (85)
90 2dis_A Unnamed protein product 22.5 79 0.0027 16.2 2.7 21 15-35 13-33 (109)
91 2e6o_A HMG box-containing prot 22.4 89 0.0031 15.9 5.4 41 28-70 29-69 (87)
92 2cqh_A IGF-II mRNA-binding pro 22.2 80 0.0027 15.7 2.6 21 15-35 13-33 (93)
93 3d2w_A TAR DNA-binding protein 22.0 65 0.0022 16.3 2.2 20 15-34 16-35 (89)
94 3ucg_A Polyadenylate-binding p 21.8 67 0.0023 15.7 2.2 20 15-34 11-30 (89)
95 2dgw_A Probable RNA-binding pr 21.6 69 0.0023 15.9 2.2 20 15-34 15-34 (91)
96 4a8x_A RNA-binding protein wit 21.0 72 0.0024 15.5 2.2 20 15-34 9-28 (88)
97 1r4v_A Hypothetical protein AQ 21.0 1.5E+02 0.0051 17.9 4.0 30 27-56 138-167 (171)
98 2bye_A Phospholipase C, epsilo 20.8 62 0.0021 18.1 2.0 21 9-29 19-39 (110)
99 2ov6_A V-type ATP synthase sub 20.7 33 0.0011 18.5 0.8 27 11-37 13-42 (101)
100 3s7r_A Heterogeneous nuclear r 20.7 73 0.0025 15.6 2.2 20 15-34 16-35 (87)
101 2dgv_A HnRNP M, heterogeneous 20.6 66 0.0023 15.9 2.0 20 15-34 13-32 (92)
102 3ff5_A PEX14P, peroxisomal bio 20.5 70 0.0024 15.5 1.9 15 19-33 39-53 (54)
103 1uzc_A Hypothetical protein FL 20.5 98 0.0034 15.7 6.0 55 21-75 11-69 (71)
104 2cqi_A Nucleolysin TIAR; RNA r 20.3 99 0.0034 15.7 2.7 21 15-35 20-40 (103)
No 1
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.91 E-value=6.8e-25 Score=119.68 Aligned_cols=68 Identities=37% Similarity=0.522 Sum_probs=62.5
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHhHHh
Q 034961 8 MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSLVST 75 (78)
Q Consensus 8 ~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~~ 75 (78)
+..|||+||||+++++.++|+++|+++++.+|||+++ +.+.|+.|++||++|+||.+|..||+.....
T Consensus 1 m~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 71 (77)
T 1hdj_A 1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEG 71 (77)
T ss_dssp CCCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccc
Confidence 3579999999999999999999999999999999984 6789999999999999999999999876544
No 2
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.91 E-value=1.1e-24 Score=119.22 Aligned_cols=69 Identities=38% Similarity=0.534 Sum_probs=62.9
Q ss_pred CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961 6 PGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSLVS 74 (78)
Q Consensus 6 ~~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~ 74 (78)
.+...|||+||||+++++.++|+++|+++++.+|||+++ +.+.|+.|++||++|+||.+|..||+....
T Consensus 3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 75 (79)
T 2dn9_A 3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSG 75 (79)
T ss_dssp SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCC
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCc
Confidence 456779999999999999999999999999999999985 468999999999999999999999987643
No 3
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=9.3e-25 Score=119.38 Aligned_cols=69 Identities=35% Similarity=0.508 Sum_probs=63.2
Q ss_pred CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCC---ccHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961 6 PGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLS---SNGWDFTEIHNAYETLSDPKARAVYDMSLVS 74 (78)
Q Consensus 6 ~~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~---~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~ 74 (78)
.+...|||+||||+++++.++|+++|+++++.+|||++ .+.+.|+.|++||++|+||.+|..||+.+..
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 74 (78)
T 2ctp_A 3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSG 74 (78)
T ss_dssp CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSC
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence 45567999999999999999999999999999999998 4678999999999999999999999987644
No 4
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=2.1e-24 Score=120.47 Aligned_cols=70 Identities=40% Similarity=0.545 Sum_probs=63.8
Q ss_pred CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHhHHh
Q 034961 6 PGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSLVST 75 (78)
Q Consensus 6 ~~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~~ 75 (78)
++...|||+||||+++++.++|+++|+++++.+|||+++ +.+.|+.|++||++|+||.+|..||..+...
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 75 (88)
T 2ctr_A 3 SGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSA 75 (88)
T ss_dssp SCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHH
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 456679999999999999999999999999999999985 4788999999999999999999999877543
No 5
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.91 E-value=2.2e-24 Score=116.68 Aligned_cols=64 Identities=39% Similarity=0.606 Sum_probs=60.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
..|||+||||+++++.++|+++|+++++.+|||+++ +.+.|+.|++||++|+||.+|..||+..
T Consensus 7 ~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g 71 (73)
T 2och_A 7 ETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQGG 71 (73)
T ss_dssp CCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 469999999999999999999999999999999985 4789999999999999999999999865
No 6
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=2.6e-24 Score=122.39 Aligned_cols=68 Identities=34% Similarity=0.457 Sum_probs=62.4
Q ss_pred CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961 6 PGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSLV 73 (78)
Q Consensus 6 ~~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~ 73 (78)
.....|||+||||+++++.++||++|+++++.+|||+++ +.+.|+.|++||++|+||.+|..||+.+.
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 84 (99)
T 2yua_A 13 SYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLL 84 (99)
T ss_dssp SSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred CCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 455679999999999999999999999999999999984 47899999999999999999999998663
No 7
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5.6e-24 Score=119.61 Aligned_cols=68 Identities=37% Similarity=0.570 Sum_probs=62.9
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHHHHHcCChhHHHHHHHHhHHh
Q 034961 8 MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLS-SNGWDFTEIHNAYETLSDPKARAVYDMSLVST 75 (78)
Q Consensus 8 ~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~-~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~~ 75 (78)
...|+|+||||+++++.++|+++|+++++.+|||++ .+.+.|+.|++||++|+||.+|..||+.....
T Consensus 6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 74 (92)
T 2o37_A 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQYGLEA 74 (92)
T ss_dssp SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHH
T ss_pred cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHH
Confidence 456999999999999999999999999999999998 46789999999999999999999999887554
No 8
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=7.2e-24 Score=122.89 Aligned_cols=69 Identities=22% Similarity=0.256 Sum_probs=63.5
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHhHHh
Q 034961 7 GMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSLVST 75 (78)
Q Consensus 7 ~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~~ 75 (78)
....|||+||||+++++.++||++|+++++.+|||+++ +.+.|+.|++||++|+||.+|..||+.+...
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~ 89 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQ 89 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhc
Confidence 34579999999999999999999999999999999985 4789999999999999999999999987654
No 9
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.90 E-value=1e-23 Score=117.69 Aligned_cols=68 Identities=34% Similarity=0.453 Sum_probs=62.6
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961 7 GMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSLVS 74 (78)
Q Consensus 7 ~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~ 74 (78)
....|||+||||+++++.++||++|+++++.+|||+++ +.+.|+.|++||++|+||.+|..||+....
T Consensus 14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 84 (88)
T 2cug_A 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSG 84 (88)
T ss_dssp SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCC
Confidence 34679999999999999999999999999999999984 678999999999999999999999987643
No 10
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.90 E-value=2.3e-24 Score=121.31 Aligned_cols=68 Identities=28% Similarity=0.506 Sum_probs=62.1
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----------cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961 7 GMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----------NGWDFTEIHNAYETLSDPKARAVYDMSLVS 74 (78)
Q Consensus 7 ~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~ 74 (78)
....|||+||||+++++.++||++|+++++.+|||+++ +.+.|+.|++||++|+||.+|..||..+..
T Consensus 13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 90 (94)
T 1wjz_A 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG 90 (94)
T ss_dssp SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence 34569999999999999999999999999999999963 468899999999999999999999998754
No 11
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=6.9e-24 Score=116.81 Aligned_cols=68 Identities=37% Similarity=0.463 Sum_probs=61.6
Q ss_pred CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961 6 PGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----NGWDFTEIHNAYETLSDPKARAVYDMSLV 73 (78)
Q Consensus 6 ~~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~ 73 (78)
.....|||+||||+++++.++|+++|+++++.+|||+++ +.+.|+.|++||++|+||.+|..||+...
T Consensus 5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 77 (82)
T 2ej7_A 5 SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGS 77 (82)
T ss_dssp CSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCC
T ss_pred CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 344579999999999999999999999999999999985 35689999999999999999999998754
No 12
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.89 E-value=2.7e-23 Score=120.01 Aligned_cols=69 Identities=38% Similarity=0.505 Sum_probs=62.6
Q ss_pred CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961 6 PGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSLVS 74 (78)
Q Consensus 6 ~~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~ 74 (78)
.....|+|+||||+++++.++||++|+++++++|||+++ +.+.|+.|++||++|+||.+|..||+....
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~ 85 (109)
T 2ctw_A 13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSL 85 (109)
T ss_dssp TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHH
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccc
Confidence 445679999999999999999999999999999999985 378899999999999999999999986543
No 13
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.89 E-value=2e-23 Score=118.84 Aligned_cols=65 Identities=37% Similarity=0.522 Sum_probs=60.5
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961 10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----NGWDFTEIHNAYETLSDPKARAVYDMSLVS 74 (78)
Q Consensus 10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~ 74 (78)
.|||+||||+++++.++||++|+++++.+|||+++ +.+.|+.|++||++|+||.+|..||.....
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~ 71 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGRE 71 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence 48999999999999999999999999999999984 457899999999999999999999998754
No 14
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.89 E-value=2.6e-23 Score=126.15 Aligned_cols=71 Identities=28% Similarity=0.465 Sum_probs=63.9
Q ss_pred CCCCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----------cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961 4 MAPGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----------NGWDFTEIHNAYETLSDPKARAVYDMSLV 73 (78)
Q Consensus 4 ~~~~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~ 73 (78)
+......|||+||||+++++.++||++|+++++++|||+++ +.+.|..|++||++|+||.+|+.||..+.
T Consensus 4 ~~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~ 83 (155)
T 2l6l_A 4 VEQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC 83 (155)
T ss_dssp CCCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred cccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 44556679999999999999999999999999999999984 24889999999999999999999998876
Q ss_pred H
Q 034961 74 S 74 (78)
Q Consensus 74 ~ 74 (78)
.
T Consensus 84 ~ 84 (155)
T 2l6l_A 84 E 84 (155)
T ss_dssp H
T ss_pred h
Confidence 4
No 15
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=3e-23 Score=116.48 Aligned_cols=67 Identities=37% Similarity=0.513 Sum_probs=61.3
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961 7 GMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----NGWDFTEIHNAYETLSDPKARAVYDMSLV 73 (78)
Q Consensus 7 ~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~ 73 (78)
....|||+||||+++++.++|+++|+++++.+|||+++ +.+.|+.|++||++|+||.+|..||+...
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 77 (92)
T 2dmx_A 6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGC 77 (92)
T ss_dssp CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCS
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 34569999999999999999999999999999999984 36789999999999999999999998764
No 16
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.89 E-value=2.4e-23 Score=120.08 Aligned_cols=67 Identities=33% Similarity=0.398 Sum_probs=62.1
Q ss_pred CccCcccccccCCCC-CHHHHHHHHHHHHHHhCCCCCc-------cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961 8 MGGSLYEVLRVEPTA-MISEIKTVYRSLAKVYHHDLSS-------NGWDFTEIHNAYETLSDPKARAVYDMSLVS 74 (78)
Q Consensus 8 ~~~d~Y~iLgv~~~a-~~~~Ik~ay~~~~~~~hPd~~~-------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~ 74 (78)
...|||+||||++++ +.++||++|+++++.+|||+++ +.+.|+.|++||++|+||.+|..||+.+..
T Consensus 13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~ 87 (109)
T 2qsa_A 13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH 87 (109)
T ss_dssp TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence 457999999999999 9999999999999999999875 368899999999999999999999998864
No 17
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.87 E-value=1e-23 Score=120.58 Aligned_cols=66 Identities=39% Similarity=0.548 Sum_probs=60.9
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSLVS 74 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~ 74 (78)
..|||+||||+++++.++||++|+++++++|||+++ +.+.|+.|++||++|+||.+|..||+....
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA 71 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTT
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhh
Confidence 569999999999999999999999999999999974 468899999999999999999999986643
No 18
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.85 E-value=7e-22 Score=122.04 Aligned_cols=66 Identities=29% Similarity=0.378 Sum_probs=59.9
Q ss_pred ccCcccccccCCCCC--HHHHHHHHHHHHHHhCCCCCc---------cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961 9 GGSLYEVLRVEPTAM--ISEIKTVYRSLAKVYHHDLSS---------NGWDFTEIHNAYETLSDPKARAVYDMSLVS 74 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~--~~~Ik~ay~~~~~~~hPd~~~---------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~ 74 (78)
..|||+||||+++++ ..+|+++|+++++.+|||+++ +...|..|++||+||+||.+|..||..+.+
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g 79 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQG 79 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTT
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHccC
Confidence 569999999999997 999999999999999999973 347899999999999999999999988753
No 19
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=6.5e-22 Score=110.82 Aligned_cols=58 Identities=26% Similarity=0.353 Sum_probs=54.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCC---ccHHHHHHHHHHHHHcCChhHHH
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLS---SNGWDFTEIHNAYETLSDPKARA 66 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~---~~~~~~~~i~~Ay~~L~d~~~R~ 66 (78)
..|||+||||+++++.++||++|+++++.+|||++ .+.+.|+.|++||++|+||.+|+
T Consensus 26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 86 (90)
T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSG 86 (90)
T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCccccc
Confidence 47999999999999999999999999999999998 57889999999999999998764
No 20
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.85 E-value=1.4e-21 Score=121.96 Aligned_cols=65 Identities=34% Similarity=0.449 Sum_probs=60.4
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961 10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSLVS 74 (78)
Q Consensus 10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~ 74 (78)
.|||+||||+++++.++||++||++++.+|||+++ +.+.|+.|++||++|+||.+|+.||+....
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~ 70 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEK 70 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccc
Confidence 48999999999999999999999999999999984 578999999999999999999999987643
No 21
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.85 E-value=1.4e-22 Score=111.24 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=57.0
Q ss_pred CccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHH
Q 034961 8 MGGSLYEVLRVEPT--AMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVY 68 (78)
Q Consensus 8 ~~~d~Y~iLgv~~~--a~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Y 68 (78)
...++|+||||+++ ++..+||++||++++++|||++++.+.|++|++||++|+|+..|..+
T Consensus 9 ~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~~~ 71 (79)
T 1faf_A 9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRM 71 (79)
T ss_dssp HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33589999999999 99999999999999999999999999999999999999999988764
No 22
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.84 E-value=3.2e-23 Score=128.01 Aligned_cols=69 Identities=17% Similarity=0.205 Sum_probs=60.0
Q ss_pred CCCCCccCcccccccCCCCC--HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 4 MAPGMGGSLYEVLRVEPTAM--ISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 4 ~~~~~~~d~Y~iLgv~~~a~--~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
+.+....|+|+||||+++++ .++||+|||++++.+|||++++.+.|++|++||++|+||.+|+.||+..
T Consensus 5 l~~~~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp~kR~~YD~~G 75 (174)
T 2pf4_E 5 LNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFG 75 (174)
T ss_dssp SCHHHHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHHHHHHTSCGGG
T ss_pred hcccccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCHHHHHHHhccC
Confidence 33444579999999999998 6999999999999999999988899999999999999999999999865
No 23
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.84 E-value=1.9e-21 Score=119.80 Aligned_cols=64 Identities=22% Similarity=0.333 Sum_probs=58.9
Q ss_pred CcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCc---------cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961 11 SLYEVLRVEPTA--MISEIKTVYRSLAKVYHHDLSS---------NGWDFTEIHNAYETLSDPKARAVYDMSLVS 74 (78)
Q Consensus 11 d~Y~iLgv~~~a--~~~~Ik~ay~~~~~~~hPd~~~---------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~ 74 (78)
|||+||||++++ +..+|+++|+++++.+|||+++ +...|..|++||+||+||.+|+.||..+.+
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g 76 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHG 76 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcC
Confidence 899999999999 9999999999999999999974 236899999999999999999999988753
No 24
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.83 E-value=7.7e-21 Score=120.13 Aligned_cols=68 Identities=21% Similarity=0.366 Sum_probs=59.9
Q ss_pred CCccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCc---------cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961 7 GMGGSLYEVLRVEPT--AMISEIKTVYRSLAKVYHHDLSS---------NGWDFTEIHNAYETLSDPKARAVYDMSLVS 74 (78)
Q Consensus 7 ~~~~d~Y~iLgv~~~--a~~~~Ik~ay~~~~~~~hPd~~~---------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~ 74 (78)
....|||+||||+++ ++..+|+++||++++++|||+++ +.+.|..|++||+||+||.+|+.||..+.+
T Consensus 40 ~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~G 118 (207)
T 3bvo_A 40 DPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHG 118 (207)
T ss_dssp CTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhcC
Confidence 346799999999986 68999999999999999999974 246789999999999999999999987643
No 25
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.83 E-value=7.6e-23 Score=119.09 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=58.7
Q ss_pred ccCcccccccCCCCCH--HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHHH
Q 034961 9 GGSLYEVLRVEPTAMI--SEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDM 70 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~--~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~ 70 (78)
..++|+||||+++++. .+||++||++++++|||+++..+.|+.|++||+||+||.+|+.||.
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~~~R~~~~~ 70 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPD 70 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCSSC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCHHHHHHhhh
Confidence 4589999999999998 9999999999999999999988999999999999999999999873
No 26
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.81 E-value=1.3e-20 Score=117.08 Aligned_cols=68 Identities=26% Similarity=0.450 Sum_probs=61.0
Q ss_pred CCCCccCccccc------ccCC-CCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 5 APGMGGSLYEVL------RVEP-TAMISEIKTVYRSLAKVYHHDLSS-NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 5 ~~~~~~d~Y~iL------gv~~-~a~~~~Ik~ay~~~~~~~hPd~~~-~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
.+....|||+|| |+++ +++..+|+++||++++.+|||+++ +.+.|..|++||+||+||.+|..||..+
T Consensus 6 ~~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 6 QRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp -CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 445567999999 4655 899999999999999999999986 7788999999999999999999999988
No 27
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.81 E-value=5.7e-21 Score=102.88 Aligned_cols=57 Identities=19% Similarity=0.214 Sum_probs=52.9
Q ss_pred ccCcccccccCC-CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHH
Q 034961 9 GGSLYEVLRVEP-TAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKAR 65 (78)
Q Consensus 9 ~~d~Y~iLgv~~-~a~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R 65 (78)
..++|+||||++ +++.++|+++|+++++.+|||++++.+.|++|++||++|+++..|
T Consensus 13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence 358999999999 799999999999999999999999999999999999999987544
No 28
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.81 E-value=1.5e-21 Score=130.23 Aligned_cols=64 Identities=39% Similarity=0.606 Sum_probs=0.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSL 72 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 72 (78)
..|||+||||+++|+.++||+|||++++++|||+++ +.+.|++|++||++|+||.+|+.||+.+
T Consensus 27 ~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 93 (329)
T 3lz8_A 27 LKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLW 93 (329)
T ss_dssp -------------------------------------------------------------------
T ss_pred ccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhh
Confidence 469999999999999999999999999999999874 5788999999999999999999999874
No 29
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.78 E-value=2.8e-20 Score=103.91 Aligned_cols=59 Identities=19% Similarity=0.132 Sum_probs=53.2
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChhHH
Q 034961 7 GMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----NGWDFTEIHNAYETLSDPKAR 65 (78)
Q Consensus 7 ~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----~~~~~~~i~~Ay~~L~d~~~R 65 (78)
....++|+||||+++++.++||++|+++++++|||+++ +.+.|+.|++||++|++...|
T Consensus 13 ~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 13 SILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp SCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 34468999999999999999999999999999999985 468999999999999987655
No 30
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.77 E-value=5e-20 Score=114.41 Aligned_cols=59 Identities=19% Similarity=0.369 Sum_probs=54.8
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-------cHHHHHHHHHHHHHcCChhHHHHH
Q 034961 10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-------NGWDFTEIHNAYETLSDPKARAVY 68 (78)
Q Consensus 10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-------~~~~~~~i~~Ay~~L~d~~~R~~Y 68 (78)
.|+|+||||+++++..+||++||++++.+|||++. +.+.|+.|++||++|+|+.+|..|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 59999999999999999999999999999999973 467999999999999999998765
No 31
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.76 E-value=4.3e-19 Score=102.04 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=49.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----------cHHHHHHHHHHHHHcCChh
Q 034961 9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----------NGWDFTEIHNAYETLSDPK 63 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----------~~~~~~~i~~Ay~~L~d~~ 63 (78)
..|||+|||++. ++..+||+|||++++.+|||+++ +.+.|+.|++||++|+|+.
T Consensus 40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 469999999996 99999999999999999999963 2678999999999999985
No 32
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.73 E-value=6.7e-19 Score=98.98 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=47.8
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-------cHHHHHHHHHHHHHcCC
Q 034961 10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-------NGWDFTEIHNAYETLSD 61 (78)
Q Consensus 10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-------~~~~~~~i~~Ay~~L~d 61 (78)
.++|++|||+++++.++||+|||++++.+|||+++ ++..|+.|++||++|.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999873 46789999999999974
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.72 E-value=3.6e-19 Score=127.40 Aligned_cols=68 Identities=32% Similarity=0.410 Sum_probs=40.3
Q ss_pred CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961 6 PGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSLV 73 (78)
Q Consensus 6 ~~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~ 73 (78)
.....|||+||||+++|+.++||+|||++++.+|||+++ +.+.|+.|++||++|+||.+|+.||+...
T Consensus 17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~ 88 (780)
T 3apo_A 17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGE 88 (780)
T ss_dssp ------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcc
Confidence 345679999999999999999999999999999999983 46789999999999999999999998654
No 34
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.1e-13 Score=73.19 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=48.3
Q ss_pred CcccccccCCC---CCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCCh
Q 034961 11 SLYEVLRVEPT---AMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDP 62 (78)
Q Consensus 11 d~Y~iLgv~~~---a~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~ 62 (78)
.-|.||||+++ ++.++|+++|++++..+|||++++......|++|+++|...
T Consensus 5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45789999999 99999999999999999999999999999999999998743
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.33 E-value=8.8e-13 Score=86.90 Aligned_cols=62 Identities=35% Similarity=0.472 Sum_probs=52.3
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-------cHHHHHHHHHHHHHcCChhHHHHHHHH
Q 034961 10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-------NGWDFTEIHNAYETLSDPKARAVYDMS 71 (78)
Q Consensus 10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 71 (78)
.++|.+||+.++++.++|+++|+++++.+|||+.+ +...|..|.+||++|+||.+|..||+.
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~g 450 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDG 450 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC------
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccCC
Confidence 48999999999999999999999999999999874 456899999999999999999999973
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=94.39 E-value=0.039 Score=39.14 Aligned_cols=46 Identities=22% Similarity=0.168 Sum_probs=35.6
Q ss_pred ccCcccccccCCCCCH--HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH
Q 034961 9 GGSLYEVLRVEPTAMI--SEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYET 58 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~--~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~ 58 (78)
..++|.+||++.+... ..|+++||++++..+++ ...+..|..|..|
T Consensus 628 ~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~----~~r~~lvd~a~~v 675 (681)
T 2pzi_A 628 KASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ----RHRYTLVDMANKV 675 (681)
T ss_dssp CCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH----HHHHHHHHHHHHH
T ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh----HHHHHHHHHhccc
Confidence 4469999999776655 66999999999966554 5678888888765
No 37
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=58.64 E-value=16 Score=18.26 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhCCCCCc-cHHHHHHH---HHHHHHcCC-hh-HHHHHHHHhHH
Q 034961 25 SEIKTVYRSLAKVYHHDLSS-NGWDFTEI---HNAYETLSD-PK-ARAVYDMSLVS 74 (78)
Q Consensus 25 ~~Ik~ay~~~~~~~hPd~~~-~~~~~~~i---~~Ay~~L~d-~~-~R~~Yd~~l~~ 74 (78)
++..++|.++.+...-+..- -++....| ..-|.+|.| |. ++..|+..+.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~~~ 58 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLSN 58 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHHHhc
Confidence 46788999999988777663 34555555 358999997 76 56688876643
No 38
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.99 E-value=18 Score=18.76 Aligned_cols=42 Identities=21% Similarity=0.088 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHHH
Q 034961 28 KTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDM 70 (78)
Q Consensus 28 k~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~ 70 (78)
-..+|...+.-||+.....+..+.|.+.|..|++.. +..|..
T Consensus 17 ~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~ee-K~~y~~ 58 (81)
T 2d7l_A 17 LEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEE-RKVWAN 58 (81)
T ss_dssp HHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHH-HHHHHH
T ss_pred HHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHH-HHHHHH
Confidence 345677777889997545778889999999999554 555543
No 39
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=48.14 E-value=17 Score=18.67 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=18.0
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSLA 35 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~~ 35 (78)
|=||+++++.++|+..|....
T Consensus 6 v~nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 6 LRMLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp EETCCSSCCHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHHHhC
Confidence 347999999999999998774
No 40
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=47.43 E-value=12 Score=21.83 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=26.2
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHHhCCC
Q 034961 12 LYEVLRVEPTAMISEIKTVYRSLAKVYHHD 41 (78)
Q Consensus 12 ~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd 41 (78)
++..+.|....+.++++++-..+..+.||+
T Consensus 34 ~l~~k~ig~~Its~eL~~~AqeiL~q~hp~ 63 (138)
T 1qqr_A 34 LLKTLAIGDTITSQELLAQAQSILNKNHPG 63 (138)
T ss_dssp EEEEECTTCEEEHHHHHHHHHHHHHHHSTT
T ss_pred hhcccccCcccCHHHHHHHHHHHHHhcCCC
Confidence 366777788889999999999999999998
No 41
>3bbz_A P protein, phosphoprotein; molten globule, viral protein, replication; 2.10A {Mumps virus}
Probab=45.83 E-value=25 Score=16.87 Aligned_cols=27 Identities=7% Similarity=0.293 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHHh
Q 034961 49 FTEIHNAYETLSDPKARAVYDMSLVST 75 (78)
Q Consensus 49 ~~~i~~Ay~~L~d~~~R~~Yd~~l~~~ 75 (78)
....+-+-+-++||..|..|+..+.+.
T Consensus 5 ltl~~l~kdCi~np~~r~~Fe~ki~~~ 31 (49)
T 3bbz_A 5 VMITKMITDSVANPQMKQAFEQRLAKA 31 (49)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344566777899999999999887654
No 42
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=43.71 E-value=18 Score=19.76 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC
Q 034961 21 TAMISEIKTVYRSLAKVYHHDL 42 (78)
Q Consensus 21 ~a~~~~Ik~ay~~~~~~~hPd~ 42 (78)
+-++.+|+.+|+.|++.+|-..
T Consensus 67 Nks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 67 NKTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHHHHHHHHHHHHh
Confidence 4578888999999888876543
No 43
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=41.15 E-value=32 Score=16.69 Aligned_cols=41 Identities=12% Similarity=0.029 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHHH
Q 034961 28 KTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDM 70 (78)
Q Consensus 28 k~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~ 70 (78)
...++..++.-||+.. ..+....|.+.|..|++. .|..|..
T Consensus 14 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~-eK~~y~~ 54 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLA-EKRPFVE 54 (71)
T ss_dssp HHHHHHHHHTTCTTSC-HHHHHHHHHHHHHHSCHH-HHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHH-HHHHHHH
Confidence 3456666777788765 567788899999999855 4555543
No 44
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=39.88 E-value=25 Score=18.69 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=18.0
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSLA 35 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~~ 35 (78)
++-|++.++..+||+|-..+-
T Consensus 26 ~F~V~~~AnK~qIK~ave~lf 46 (85)
T 1vq8_S 26 QFAVDDRASKGEVADAVEEQY 46 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 678999999999999987663
No 45
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.99 E-value=57 Score=18.95 Aligned_cols=39 Identities=15% Similarity=0.038 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCC-CccHHHHHHHHHHHHHcCChhHHH
Q 034961 28 KTVYRSLAKVYHHDL-SSNGWDFTEIHNAYETLSDPKARA 66 (78)
Q Consensus 28 k~ay~~~~~~~hPd~-~~~~~~~~~i~~Ay~~L~d~~~R~ 66 (78)
-...+..++.-||+. ....+....|.+.|..|++..+..
T Consensus 27 ~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~ 66 (173)
T 2yrq_A 27 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGK 66 (173)
T ss_dssp HHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 345566677789996 356788899999999999665433
No 46
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=38.32 E-value=32 Score=16.43 Aligned_cols=19 Identities=11% Similarity=0.232 Sum_probs=16.5
Q ss_pred cccCCCCCHHHHHHHHHHH
Q 034961 16 LRVEPTAMISEIKTVYRSL 34 (78)
Q Consensus 16 Lgv~~~a~~~~Ik~ay~~~ 34 (78)
=||+++++.++|+..|.+.
T Consensus 5 ~nLp~~~t~~~l~~~F~~~ 23 (75)
T 1iqt_A 5 GGLSPDTPEEKIREYFGGF 23 (75)
T ss_dssp SCCCSSCCHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHhc
Confidence 4789999999999999876
No 47
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=37.37 E-value=28 Score=18.79 Aligned_cols=20 Identities=40% Similarity=0.496 Sum_probs=17.1
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSL 34 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~ 34 (78)
+|-|++.|+..+|++|-..+
T Consensus 31 ~F~V~~~AnK~eIK~AVE~l 50 (93)
T 3r8s_T 31 VLKVAKDATKAEIKAAVQKL 50 (93)
T ss_dssp EEEECSSCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 47789999999999988765
No 48
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=36.60 E-value=29 Score=18.82 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=18.3
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSLA 35 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~~ 35 (78)
++-|++.|+..+||+|-..+-
T Consensus 26 ~F~V~~~anK~eIK~aVE~lf 46 (95)
T 2zjr_Q 26 SFWVSPKATKTEIKDAIQQAF 46 (95)
T ss_dssp EEEECSSCTHHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHh
Confidence 788999999999999987663
No 49
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.57 E-value=32 Score=18.32 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=17.3
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSL 34 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~ 34 (78)
++-|++.|+..+||+|-..+
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~l 46 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEI 46 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHH
Confidence 47789999999999998766
No 50
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=34.31 E-value=34 Score=18.42 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=17.4
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSL 34 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~ 34 (78)
++-|++.|+..+||+|-..+
T Consensus 25 ~F~V~~~AnK~qIK~aVe~l 44 (92)
T 3tve_T 25 TFWVHPKATKTEIKNAVETA 44 (92)
T ss_dssp EEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 57899999999999998765
No 51
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=34.26 E-value=26 Score=18.14 Aligned_cols=42 Identities=24% Similarity=0.306 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHH
Q 034961 21 TAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYD 69 (78)
Q Consensus 21 ~a~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd 69 (78)
+.+-..+-+.|-.+... +|+.. ..|++|.+.|.-..+|+.||
T Consensus 9 ~~SL~~lt~kFi~l~~~-~~~~~------i~l~~aa~~L~v~~kRRiYD 50 (76)
T 1cf7_A 9 EKSLGLLTTKFVSLLQE-AKDGV------LDLKLAADTLAVRQKRRIYD 50 (76)
T ss_dssp TTCHHHHHHHHHHHHHH-SSTTE------EEHHHHHHHTTTCCTHHHHH
T ss_pred cCcHHHHHHHHHHHHHh-CCCCc------CcHHHHHHHhCCccceehhh
Confidence 34566677777777654 34432 12577777777536999999
No 52
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=31.68 E-value=54 Score=16.46 Aligned_cols=40 Identities=10% Similarity=0.099 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHH
Q 034961 29 TVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYD 69 (78)
Q Consensus 29 ~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd 69 (78)
..++..++.-+|+.. ..+....|.+.|..|++..+...++
T Consensus 17 ~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y~~ 56 (81)
T 1i11_A 17 KDERRKILQAFPDMH-NSNISKILGSRWKAMTNLEKQPYYE 56 (81)
T ss_dssp HHHHHHHHTTCSSCC-HHHHHHHHHHHHTTSCSGGGHHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHhhhhhCCHHHHHHHHH
Confidence 445666666788754 5677888999999999776555444
No 53
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=31.49 E-value=61 Score=21.65 Aligned_cols=28 Identities=11% Similarity=0.052 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHh
Q 034961 48 DFTEIHNAYETLSDPKARAVYDMSLVST 75 (78)
Q Consensus 48 ~~~~i~~Ay~~L~d~~~R~~Yd~~l~~~ 75 (78)
...++..+|+.|.|+..|..|...+..+
T Consensus 170 ~~~~i~~v~~~l~D~~SR~~~~~~l~~r 197 (409)
T 2py6_A 170 NIPAFQTLAQRLADDYSVQTLYAVLNFH 197 (409)
T ss_dssp THHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCHhHHHHHHHHHHHH
Confidence 4677889999999999999998777543
No 54
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=31.35 E-value=11 Score=15.49 Aligned_cols=10 Identities=10% Similarity=0.404 Sum_probs=7.5
Q ss_pred CcccccccCC
Q 034961 11 SLYEVLRVEP 20 (78)
Q Consensus 11 d~Y~iLgv~~ 20 (78)
=+|+|+|...
T Consensus 4 lFyEIFGtG~ 13 (26)
T 2xpn_B 4 MFFEIFGTGE 13 (26)
T ss_pred EEEEEecCCc
Confidence 3789999754
No 55
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=31.31 E-value=55 Score=16.44 Aligned_cols=41 Identities=12% Similarity=0.029 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHHH
Q 034961 28 KTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDM 70 (78)
Q Consensus 28 k~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~ 70 (78)
...++..+..-||+.. ..+....|.+.|..|++. .|..|..
T Consensus 18 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~-eK~~y~~ 58 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLA-EKRPFVE 58 (83)
T ss_dssp HHHHHHHHHHHCSSSC-HHHHHHHHHHHHHHSCHH-HHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHH-HHHHHHH
Confidence 4456677777889865 567788899999999855 4555543
No 56
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=30.81 E-value=53 Score=16.14 Aligned_cols=39 Identities=8% Similarity=0.011 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHHH
Q 034961 28 KTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDM 70 (78)
Q Consensus 28 k~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~ 70 (78)
...+|..++.-||+.. ..+....|.+.|..|++ |..|..
T Consensus 15 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~---K~~y~~ 53 (73)
T 3nm9_A 15 LNSARESIKRENPGIK-VTEVAKRGGELWRAMKD---KSEWEA 53 (73)
T ss_dssp HHHHHHHHHHHSSSCC-HHHHHHHHHHHHHHCSC---CHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCc---hHHHHH
Confidence 3455666777888865 56778889999999987 655653
No 57
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=30.70 E-value=49 Score=16.20 Aligned_cols=21 Identities=5% Similarity=-0.021 Sum_probs=17.8
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSLA 35 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~~ 35 (78)
|=||+.+++.++|+..|.+..
T Consensus 11 V~nLp~~~t~~~l~~~F~~~~ 31 (87)
T 2hzc_A 11 VGNIPFGITEEAMMDFFNAQM 31 (87)
T ss_dssp EESCCTTCCHHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHHHh
Confidence 447899999999999998874
No 58
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=30.56 E-value=31 Score=19.77 Aligned_cols=26 Identities=12% Similarity=0.401 Sum_probs=17.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHHh
Q 034961 49 FTEIHNAYETLSDPKARAVYDMSLVST 75 (78)
Q Consensus 49 ~~~i~~Ay~~L~d~~~R~~Yd~~l~~~ 75 (78)
+....+.|.||+ |..|..++..+..+
T Consensus 97 ~~~~~~~~~vLT-PEQr~q~~~~~~kr 122 (138)
T 3oeo_A 97 METQNKIYNILT-PEQKKQFNANFEKR 122 (138)
T ss_dssp HHHHHHHHTTSC-HHHHHHHHHHTC--
T ss_pred HHHHHHHHHhCC-HHHHHHHHHHHHHH
Confidence 444566777777 88999888776544
No 59
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.46 E-value=62 Score=16.49 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCCCC-ccHHHHHHHHHHHHHcCChhHHHHHH
Q 034961 29 TVYRSLAKVYHHDLS-SNGWDFTEIHNAYETLSDPKARAVYD 69 (78)
Q Consensus 29 ~ay~~~~~~~hPd~~-~~~~~~~~i~~Ay~~L~d~~~R~~Yd 69 (78)
...+..++.-||+.. ...+....|.+.|..|++.. +..|.
T Consensus 28 ~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~e-K~~y~ 68 (86)
T 2eqz_A 28 QTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKE-KSKFD 68 (86)
T ss_dssp HHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHH-HHHHH
T ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHH-HHHHH
Confidence 445556667789875 35788899999999998654 44443
No 60
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=29.45 E-value=57 Score=16.43 Aligned_cols=38 Identities=18% Similarity=0.069 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCCCCC-ccHHHHHHHHHHHHHcCChhHHH
Q 034961 29 TVYRSLAKVYHHDLS-SNGWDFTEIHNAYETLSDPKARA 66 (78)
Q Consensus 29 ~ay~~~~~~~hPd~~-~~~~~~~~i~~Ay~~L~d~~~R~ 66 (78)
...|..++.-||+.. ...+....|.+.|..|++..+..
T Consensus 20 ~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~ 58 (83)
T 1aab_A 20 QTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGK 58 (83)
T ss_dssp HHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHH
T ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHH
Confidence 344555666788764 34566788999999999765443
No 61
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=28.75 E-value=1.1e+02 Score=18.98 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHH
Q 034961 29 TVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAV 67 (78)
Q Consensus 29 ~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~ 67 (78)
...+...+.-||+.. ..+....|.+.|..|++..+...
T Consensus 54 ~e~r~~~k~~~P~~~-~~eisk~lge~Wk~Ls~~EK~~y 91 (238)
T 3tmm_A 54 KEQLPIFKAQNPDAK-TTELIRRIAQRWRELPDSKKKIY 91 (238)
T ss_dssp HHHHHHHHHHSTTSC-HHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHhCCCCC-HHHHHHHHHHHHHhCCHHHHHHH
Confidence 344555667788865 56778888999999996654433
No 62
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=28.52 E-value=57 Score=15.78 Aligned_cols=39 Identities=18% Similarity=0.057 Sum_probs=27.9
Q ss_pred HHHHHHHHhCCCCC-ccHHHHHHHHHHHHHcCChhHHHHH
Q 034961 30 VYRSLAKVYHHDLS-SNGWDFTEIHNAYETLSDPKARAVY 68 (78)
Q Consensus 30 ay~~~~~~~hPd~~-~~~~~~~~i~~Ay~~L~d~~~R~~Y 68 (78)
..+...+.-||+.. ...+....|.+.|..|++..+....
T Consensus 15 ~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~ 54 (71)
T 1ckt_A 15 TCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 54 (71)
T ss_dssp HHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHH
T ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 34555567789865 3478889999999999977554433
No 63
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=28.37 E-value=39 Score=16.13 Aligned_cols=19 Identities=5% Similarity=0.245 Sum_probs=15.9
Q ss_pred cccCCCCCHHHHHHHHHHH
Q 034961 16 LRVEPTAMISEIKTVYRSL 34 (78)
Q Consensus 16 Lgv~~~a~~~~Ik~ay~~~ 34 (78)
=||+++.+.++|+..|...
T Consensus 5 ~nlp~~~t~~~l~~~F~~~ 23 (75)
T 2mss_A 5 GGLSVNTTVEDVKHYFEQF 23 (75)
T ss_dssp ECCCSSCCHHHHHHHHHTT
T ss_pred ecCCCCCCHHHHHHHHHhc
Confidence 3789999999999988764
No 64
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=27.18 E-value=83 Score=17.22 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHH--cCChhHHHHH
Q 034961 47 WDFTEIHNAYET--LSDPKARAVY 68 (78)
Q Consensus 47 ~~~~~i~~Ay~~--L~d~~~R~~Y 68 (78)
+..+.+++||+. .++..+-+.|
T Consensus 11 ey~eKl~KAYElYvfs~~~~F~~Y 34 (106)
T 2vkj_A 11 TRMEKTLKAYELYIFSDYENFENY 34 (106)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHH
Confidence 567889999994 4676666665
No 65
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=26.82 E-value=1.1e+02 Score=18.56 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHH
Q 034961 29 TVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAV 67 (78)
Q Consensus 29 ~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~ 67 (78)
...+...+.-||+.. ..+....|.+.|..|++..+...
T Consensus 22 ~~~r~~~k~~~P~~~-~~eisk~lge~Wk~Ls~~EK~~y 59 (214)
T 3tq6_A 22 KEQLPIFKAQNPDAK-TTELIRRIAQRWRELPDSKKKIY 59 (214)
T ss_dssp HHHHHHHHHHCTTSC-HHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHhCCCCC-HHHHHHHHHHHHHccCHHhhhHH
Confidence 445566677789875 56778888999999996654433
No 66
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=26.76 E-value=70 Score=16.23 Aligned_cols=40 Identities=13% Similarity=-0.037 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHHH
Q 034961 29 TVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDM 70 (78)
Q Consensus 29 ~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~ 70 (78)
..++..+..-||+. ...+....|.+.|..|++. .+..|..
T Consensus 15 ~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~e-eK~~y~~ 54 (86)
T 2lef_A 15 KEMRANVVAESTLK-ESAAINQILGRRWHALSRE-EQAKYYE 54 (86)
T ss_dssp HHHHHHHHHHSSCC-CHHHHHHHHHHHHTTSCHH-HHHHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHH-HHHHHHH
Confidence 44566666778886 3567788899999999855 5555543
No 67
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=26.62 E-value=31 Score=18.05 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=17.4
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSLA 35 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~~ 35 (78)
|=+|+++++.++|++.|....
T Consensus 14 V~nL~~~~tee~L~~~F~~~G 34 (95)
T 2lkz_A 14 LRNIAPHTVVDSIMTALSPYA 34 (95)
T ss_dssp EESCCTTCCHHHHHHHSTTTC
T ss_pred EeCCCCcCCHHHHHHHHHhhC
Confidence 447899999999999997653
No 68
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=26.14 E-value=75 Score=16.34 Aligned_cols=52 Identities=10% Similarity=0.151 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCc------cHHHHHHHHHHHHHcCCh-hHHHHHHHHhHH
Q 034961 22 AMISEIKTVYRSLAKVYHHDLSS------NGWDFTEIHNAYETLSDP-KARAVYDMSLVS 74 (78)
Q Consensus 22 a~~~~Ik~ay~~~~~~~hPd~~~------~~~~~~~i~~Ay~~L~d~-~~R~~Yd~~l~~ 74 (78)
.-...++..|+.+.+...|.... ....|..- .+|..+.++ .++.+|+..+..
T Consensus 6 ~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~-~~fkav~~E~eR~~lFeeYi~~ 64 (77)
T 2cqn_A 6 SGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKE-PAFEDITLESERKRIFKDFMHV 64 (77)
T ss_dssp CSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTS-HHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccC-HHHHhcCCHHHHHHHHHHHHHH
Confidence 34667889999999988765542 22333333 489999775 556678776654
No 69
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=25.98 E-value=76 Score=16.35 Aligned_cols=42 Identities=17% Similarity=0.130 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHHHH
Q 034961 28 KTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDMS 71 (78)
Q Consensus 28 k~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 71 (78)
...++..++.-||+. ...+....|.+.|..|++. .|..|...
T Consensus 32 ~~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~e-eK~~Y~~~ 73 (90)
T 1wgf_A 32 SEEKRRQLQEERPEL-SESELTRLLARMWNDLSEK-KKAKYKAR 73 (90)
T ss_dssp HHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHH-HHHHHHHH
Confidence 344566667778884 3567788999999999955 55555443
No 70
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=25.77 E-value=70 Score=15.91 Aligned_cols=40 Identities=10% Similarity=0.016 Sum_probs=27.3
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHHH
Q 034961 29 TVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDM 70 (78)
Q Consensus 29 ~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~ 70 (78)
..++..++.-||+.. ..+....|.+.|..|++. .|..|..
T Consensus 15 ~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~e-eK~~y~~ 54 (80)
T 1gt0_D 15 RGQRRKMAQENPKMH-NSEISKRLGAEWKLLSET-EKRPFID 54 (80)
T ss_dssp HHHHHHHHTTSTTSC-HHHHHHHHHHHHTTSCHH-HHHHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHH-HHHHHHH
Confidence 345556666788753 567788899999999855 4555543
No 71
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=31.63 E-value=15 Score=19.06 Aligned_cols=21 Identities=10% Similarity=0.322 Sum_probs=15.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCC
Q 034961 21 TAMISEIKTVYRSLAKVYHHD 41 (78)
Q Consensus 21 ~a~~~~Ik~ay~~~~~~~hPd 41 (78)
+-++++|+..|+.|+..++-.
T Consensus 47 nks~~QV~~RF~~Lm~Lf~kS 67 (70)
T 2lr8_A 47 DKNPNQVSERFQQLMKLFEKS 67 (70)
Confidence 457778888888888877654
No 72
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.41 E-value=78 Score=16.33 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHH
Q 034961 29 TVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYD 69 (78)
Q Consensus 29 ~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd 69 (78)
...|..++.-||+.. ..+..+.|.+.|..|++.. |..|.
T Consensus 20 ~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~ee-K~~y~ 58 (92)
T 2cs1_A 20 QDHRPQFLIENPKTS-LEDATLQIEELWKTLSEEE-KLKYE 58 (92)
T ss_dssp HHHHHHHHHHCCSSC-HHHHHHHHHHHHHSSCHHH-HHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHH-HHHHH
Confidence 445666677789864 5677888999999998554 44443
No 73
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.12 E-value=70 Score=15.87 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=16.9
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSL 34 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~ 34 (78)
|=+|+.+++.++|+..|...
T Consensus 14 V~nlp~~~t~~~l~~~F~~~ 33 (90)
T 2dnp_A 14 VGNVSAACTSQELRSLFERR 33 (90)
T ss_dssp EESCCTTCCHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHcC
Confidence 45789999999999988765
No 74
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=24.89 E-value=81 Score=16.29 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHH
Q 034961 29 TVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAV 67 (78)
Q Consensus 29 ~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~ 67 (78)
..++..++.-||+.. ..+....|.+.|..|++..+...
T Consensus 20 ~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~Y 57 (92)
T 2crj_A 20 NERREQIRTRHPDLP-FPEITKMLGAEWSKLQPAEKQRY 57 (92)
T ss_dssp HHHHHHHHHHCTTCC-HHHHHHHHHHHHHTCCTTHHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Confidence 455666677788854 56778889999999997755443
No 75
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=24.69 E-value=76 Score=15.90 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHHH
Q 034961 28 KTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDM 70 (78)
Q Consensus 28 k~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~ 70 (78)
...++..++.-||+.. ..+....|.+.|..|++. .|..|..
T Consensus 19 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~-eK~~y~~ 59 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLD-NRGATKILADWWAVLDPK-EKQKYTD 59 (82)
T ss_dssp HHHHHHHHHHHCSSSC-TTHHHHHHHHHHHTCCHH-HHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhhCCHH-HHHHHHH
Confidence 3455666777788853 456788899999999955 5555543
No 76
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=24.33 E-value=70 Score=16.23 Aligned_cols=19 Identities=11% Similarity=0.065 Sum_probs=16.2
Q ss_pred cccCCCCCHHHHHHHHHHH
Q 034961 16 LRVEPTAMISEIKTVYRSL 34 (78)
Q Consensus 16 Lgv~~~a~~~~Ik~ay~~~ 34 (78)
=+|+.+++.++|+..|...
T Consensus 6 ~nLp~~~t~~~l~~~F~~~ 24 (101)
T 2hvz_A 6 GNLGTGAGKGELERAFSYY 24 (101)
T ss_dssp ECCCSSCSHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHhc
Confidence 4788999999999988765
No 77
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.25 E-value=66 Score=16.41 Aligned_cols=19 Identities=11% Similarity=0.066 Sum_probs=16.9
Q ss_pred ccccCCCCCHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRS 33 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~ 33 (78)
|=||+.+++.++|+..|..
T Consensus 14 V~nLp~~~t~~~l~~~F~~ 32 (104)
T 2dhg_A 14 VGDLTPDVDDGMLYEFFVK 32 (104)
T ss_dssp EECCCTTCCHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHH
Confidence 5579999999999999987
No 78
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.16 E-value=67 Score=16.21 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=17.8
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSLA 35 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~~ 35 (78)
|=+|+++++.++|+..|....
T Consensus 14 V~nLp~~~t~~~l~~~F~~~G 34 (99)
T 2div_A 14 MGDLEPYMDENFISRAFATMG 34 (99)
T ss_dssp ECSCCTTCCHHHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHHHhC
Confidence 567899999999999988754
No 79
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=24.11 E-value=75 Score=15.64 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHH
Q 034961 29 TVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARA 66 (78)
Q Consensus 29 ~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~ 66 (78)
...+..++.-||+.. ..+....|.+.|..|++..+..
T Consensus 19 ~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~ 55 (77)
T 1hme_A 19 SEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQP 55 (77)
T ss_dssp HHHHHHHHHHCTTCC-HHHHHHHHHHHHHHSCGGGSHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHH
Confidence 445555666788853 5677889999999999665443
No 80
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=23.79 E-value=73 Score=16.16 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=20.5
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHhC
Q 034961 15 VLRVEPTAMISEIKTVYRSLAKVYH 39 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~~~~~h 39 (78)
|=+|+.+++.++|+..|........
T Consensus 22 V~nLp~~~t~~~l~~~F~~~G~v~~ 46 (101)
T 1fj7_A 22 IGNLNPNKSVAELKVAISELFAKND 46 (101)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHHHhCCcce
Confidence 4478999999999999988876544
No 81
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=23.66 E-value=75 Score=16.23 Aligned_cols=21 Identities=5% Similarity=0.230 Sum_probs=17.7
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSLA 35 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~~ 35 (78)
|=+|+.+++.++|+..|....
T Consensus 18 V~nlp~~~t~~~l~~~F~~~G 38 (106)
T 2dgp_A 18 IGQIPRNLDEKDLKPLFEEFG 38 (106)
T ss_dssp EESCCTTCCHHHHHHHHHHHS
T ss_pred EeCCCCCCCHHHHHHHHHhcC
Confidence 457899999999999998763
No 82
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.64 E-value=40 Score=16.12 Aligned_cols=19 Identities=0% Similarity=-0.003 Sum_probs=15.6
Q ss_pred cccCCCCCHHHHHHHHHHH
Q 034961 16 LRVEPTAMISEIKTVYRSL 34 (78)
Q Consensus 16 Lgv~~~a~~~~Ik~ay~~~ 34 (78)
=||+.+++.++|+..|.+.
T Consensus 6 ~nlp~~~t~~~l~~~F~~~ 24 (77)
T 1uaw_A 6 GGLSWQTTQEGLREYFGQF 24 (77)
T ss_dssp ESCCSSCCSHHHHHHHTTT
T ss_pred eCCCCCCCHHHHHHHHHhc
Confidence 3788999999999888654
No 83
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=23.56 E-value=59 Score=15.88 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=16.6
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSL 34 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~ 34 (78)
|=||+.+++.++|+..|...
T Consensus 11 v~nlp~~~t~~~l~~~F~~~ 30 (87)
T 3bs9_A 11 VGDLSPEITTAAIAAAFAPF 30 (87)
T ss_dssp EESCCTTCCHHHHHHHHGGG
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 45789999999999988754
No 84
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=23.42 E-value=52 Score=17.07 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=16.9
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSL 34 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~ 34 (78)
|=+|+.+++.++|+..|...
T Consensus 24 V~nLp~~~te~~L~~~F~~~ 43 (99)
T 4fxv_A 24 VNYLPQNMTQDELRSLFSSI 43 (99)
T ss_dssp EESCCTTCCHHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 44789999999999998765
No 85
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.22 E-value=78 Score=16.03 Aligned_cols=20 Identities=10% Similarity=0.081 Sum_probs=17.4
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSL 34 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~ 34 (78)
|=+|+.+++.++|+..|...
T Consensus 17 v~nLp~~~t~~~l~~~f~~~ 36 (102)
T 1x5s_A 17 VGGLSFDTNEQSLEQVFSKY 36 (102)
T ss_dssp EESCCTTCCHHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHHhc
Confidence 55789999999999999876
No 86
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=23.01 E-value=62 Score=15.63 Aligned_cols=20 Identities=5% Similarity=0.167 Sum_probs=16.2
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSL 34 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~ 34 (78)
|=||+.+++.++|+..|...
T Consensus 6 V~nlp~~~t~~~l~~~f~~~ 25 (83)
T 3md1_A 6 VGDLNVNVDDETLRNAFKDF 25 (83)
T ss_dssp EECCCTTCCHHHHHHHHTTS
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 34789999999999888654
No 87
>1iqo_A Hypothetical protein MTH1880; beta-alpha, anti-parallel, calcium binding, structural genomics, metal binding protein; NMR {Methanothermobacter} SCOP: d.214.1.1 PDB: 1iqs_A
Probab=22.80 E-value=88 Score=16.81 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=27.7
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCC
Q 034961 8 MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHD 41 (78)
Q Consensus 8 ~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd 41 (78)
.+++-|.||=++...+.++|++-.++....+.-|
T Consensus 46 ~gT~Sy~v~FLd~~~~ieeIk~eL~~~~a~lN~d 79 (88)
T 1iqo_A 46 KGTQSNHVLFLSSYNSVDEIRKELEEAGAKINHT 79 (88)
T ss_dssp TTTTCCEEEECSCCCSCHHHHHHHHHHHHCSSCC
T ss_pred cCCceEEEEEEeCCCCHHHHHHHHHHcCcccccc
Confidence 3567899999999999999999998876655544
No 88
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=22.66 E-value=81 Score=16.12 Aligned_cols=20 Identities=10% Similarity=0.177 Sum_probs=17.0
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSL 34 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~ 34 (78)
|=+|+.+++.++|+..|...
T Consensus 16 V~nl~~~~t~~~l~~~F~~~ 35 (103)
T 2dgu_A 16 VRNLANTVTEEILEKAFSQF 35 (103)
T ss_dssp EECCCTTCCHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 45789999999999988765
No 89
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.60 E-value=56 Score=15.95 Aligned_cols=20 Identities=10% Similarity=0.175 Sum_probs=16.5
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSL 34 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~ 34 (78)
|=||+++.+.++|+..|.+.
T Consensus 17 V~~l~~~~t~~~l~~~f~~~ 36 (85)
T 2ytc_A 17 VGGLGDTITETDLRNHFYQF 36 (85)
T ss_dssp EECCTTTSCHHHHHHHHHTT
T ss_pred EcCCCCCCCHHHHHHHHHhC
Confidence 45789999999999888654
No 90
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.49 E-value=79 Score=16.24 Aligned_cols=21 Identities=10% Similarity=-0.001 Sum_probs=18.0
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSLA 35 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~~ 35 (78)
|=||+.+++.++|+..|....
T Consensus 13 V~nLp~~~t~~~l~~~f~~~G 33 (109)
T 2dis_A 13 IGGIPKMKKREEILEEIAKVT 33 (109)
T ss_dssp EECCCTTSCHHHHHHHHHHHS
T ss_pred EeCCCCcCCHHHHHHHHHHhc
Confidence 557899999999999998874
No 91
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=22.41 E-value=89 Score=15.91 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHHH
Q 034961 28 KTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDM 70 (78)
Q Consensus 28 k~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~ 70 (78)
...++..++.-||+. ...+....|.+.|..|++. .|..|..
T Consensus 29 ~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~e-eK~~y~~ 69 (87)
T 2e6o_A 29 AKKYRVEYTQMYPGK-DNRAISVILGDRWKKMKNE-ERRMYTL 69 (87)
T ss_dssp HHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHH-HHHHHHH
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHH-HHHHHHH
Confidence 345566677778875 3567788899999999955 4555543
No 92
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.21 E-value=80 Score=15.72 Aligned_cols=21 Identities=5% Similarity=0.325 Sum_probs=17.4
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSLA 35 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~~ 35 (78)
|=+|+.+++.++|+..|....
T Consensus 13 V~nLp~~~t~~~l~~~F~~~G 33 (93)
T 2cqh_A 13 IGNLSPAVTADDLRQLFGDRK 33 (93)
T ss_dssp EECCCTTCCHHHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHHHcC
Confidence 568999999999998887643
No 93
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=21.98 E-value=65 Score=16.26 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=16.8
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSL 34 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~ 34 (78)
|=||+.+++.++|+..|.+.
T Consensus 16 V~~Lp~~~te~~L~~~F~~~ 35 (89)
T 3d2w_A 16 VGRCTEDMTAEELQQFFCQY 35 (89)
T ss_dssp EESCCTTCCHHHHHHHHTTT
T ss_pred EeCCCCCCCHHHHHHHHhcc
Confidence 45789999999999988754
No 94
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=21.83 E-value=67 Score=15.75 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=16.5
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSL 34 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~ 34 (78)
|=||+.+++.++|+..|...
T Consensus 11 V~nlp~~~t~~~l~~~F~~~ 30 (89)
T 3ucg_A 11 VGNVDYGATAEELEAHFHGC 30 (89)
T ss_dssp EESCCTTCCHHHHHHHHGGG
T ss_pred EeCCCCCCCHHHHHHHHHhC
Confidence 44789999999999988754
No 95
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.60 E-value=69 Score=15.91 Aligned_cols=20 Identities=5% Similarity=-0.027 Sum_probs=16.8
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSL 34 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~ 34 (78)
|=||+.+++.++|+..|...
T Consensus 15 v~nLp~~~t~~~l~~~F~~~ 34 (91)
T 2dgw_A 15 LRGAPFNVTEKNVMEFLAPL 34 (91)
T ss_dssp EECCCSSCCHHHHHHHHTTS
T ss_pred EECCCCCCCHHHHHHHHhhC
Confidence 56789999999999888754
No 96
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=21.00 E-value=72 Score=15.55 Aligned_cols=20 Identities=10% Similarity=0.252 Sum_probs=16.7
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSL 34 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~ 34 (78)
|=||+.+++.++|+..|...
T Consensus 9 V~nlp~~~t~~~l~~~F~~~ 28 (88)
T 4a8x_A 9 IGRLTRNVTKDHIMEIFSTY 28 (88)
T ss_dssp EECCCTTCCHHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHHhC
Confidence 45789999999999988764
No 97
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=21.00 E-value=1.5e+02 Score=17.91 Aligned_cols=30 Identities=3% Similarity=-0.083 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHH
Q 034961 27 IKTVYRSLAKVYHHDLSSNGWDFTEIHNAY 56 (78)
Q Consensus 27 Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay 56 (78)
|--+.-+..+..||++++..+...+...-+
T Consensus 138 L~valARv~K~l~Pernp~~ehwE~a~~v~ 167 (171)
T 1r4v_A 138 LLLMHADVIKKATGERKPSREAMEFVAQIV 167 (171)
T ss_dssp HHHHHHHHHHHHCCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 344667788899999887766655554433
No 98
>2bye_A Phospholipase C, epsilon 1; RAS association domain, ubiquitin superfold; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=20.76 E-value=62 Score=18.12 Aligned_cols=21 Identities=10% Similarity=0.245 Sum_probs=17.2
Q ss_pred ccCcccccccCCCCCHHHHHH
Q 034961 9 GGSLYEVLRVEPTAMISEIKT 29 (78)
Q Consensus 9 ~~d~Y~iLgv~~~a~~~~Ik~ 29 (78)
..++|.||.++..++..+|-+
T Consensus 19 ~~ePftI~~~~~~STAkdvl~ 39 (110)
T 2bye_A 19 GPEPFTVFTINGGTKAKQLLQ 39 (110)
T ss_dssp SSSSSEEEECCTTCCHHHHHH
T ss_pred CCCCcEEEEecCCCcHHHHHH
Confidence 457999999999999888544
No 99
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}
Probab=20.74 E-value=33 Score=18.52 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=20.2
Q ss_pred CcccccccC---CCCCHHHHHHHHHHHHHH
Q 034961 11 SLYEVLRVE---PTAMISEIKTVYRSLAKV 37 (78)
Q Consensus 11 d~Y~iLgv~---~~a~~~~Ik~ay~~~~~~ 37 (78)
.-|.+.|+. +-.+.+++.++++++...
T Consensus 13 ~GFrLaGi~~v~~v~~~ee~~~~~~~l~~~ 42 (101)
T 2ov6_A 13 TGFRLAGISKVYETPDIPATESAVRSVLED 42 (101)
T ss_dssp HHHHHHTCCEEEECCSTTTHHHHHHHHHHH
T ss_pred HHHHHcCCCceEecCCHHHHHHHHHHHhhC
Confidence 456777887 345778899999998763
No 100
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=20.66 E-value=73 Score=15.59 Aligned_cols=20 Identities=10% Similarity=0.115 Sum_probs=16.3
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSL 34 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~ 34 (78)
|=||+.+++.++|+..|...
T Consensus 16 V~nlp~~~t~~~l~~~F~~~ 35 (87)
T 3s7r_A 16 VGGLSWDTSKKDLKDYFTKF 35 (87)
T ss_dssp EECCCTTCCHHHHHHHHTTT
T ss_pred EeCCCCCCCHHHHHHHHHhC
Confidence 44789999999999888654
No 101
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=20.58 E-value=66 Score=15.93 Aligned_cols=20 Identities=10% Similarity=0.016 Sum_probs=16.8
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSL 34 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~ 34 (78)
|=+|+.+++.++|+..|...
T Consensus 13 V~nlp~~~t~~~l~~~f~~~ 32 (92)
T 2dgv_A 13 VRNLPFDFTWKMLKDKFNEC 32 (92)
T ss_dssp ECSCCTTCCHHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 45789999999999988764
No 102
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=20.53 E-value=70 Score=15.55 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=11.1
Q ss_pred CCCCCHHHHHHHHHH
Q 034961 19 EPTAMISEIKTVYRS 33 (78)
Q Consensus 19 ~~~a~~~~Ik~ay~~ 33 (78)
+++.+.++|..|+++
T Consensus 39 sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 39 KKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HTTCCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHc
Confidence 356688888888765
No 103
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=20.49 E-value=98 Score=15.65 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCcc-HHHHHHHH--HHHHHcCCh-hHHHHHHHHhHHh
Q 034961 21 TAMISEIKTVYRSLAKVYHHDLSSN-GWDFTEIH--NAYETLSDP-KARAVYDMSLVST 75 (78)
Q Consensus 21 ~a~~~~Ik~ay~~~~~~~hPd~~~~-~~~~~~i~--~Ay~~L~d~-~~R~~Yd~~l~~~ 75 (78)
.++.++.+.+|+.+....+-+.... +.....|. .-|.+|.++ .++..|+..+...
T Consensus 11 ~~t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey~~~r 69 (71)
T 1uzc_A 11 WNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQT 69 (71)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCccccccCCHHHHHHHHHHHHHHh
Confidence 4589999999999999886555422 22223332 356777764 4566787776554
No 104
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.32 E-value=99 Score=15.68 Aligned_cols=21 Identities=10% Similarity=0.090 Sum_probs=17.8
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 034961 15 VLRVEPTAMISEIKTVYRSLA 35 (78)
Q Consensus 15 iLgv~~~a~~~~Ik~ay~~~~ 35 (78)
|=+|+.+++.++|+..|....
T Consensus 20 V~nlp~~~t~~~l~~~F~~~G 40 (103)
T 2cqi_A 20 VGNLSRDVTEVLILQLFSQIG 40 (103)
T ss_dssp EESCCTTCCHHHHHHHHHHHS
T ss_pred EeCCCccCCHHHHHHHHHhcC
Confidence 567899999999999997763
Done!