BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034969
         (77 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YWI|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
           From Geobacillus Kaustophilus
 pdb|2YWI|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
           From Geobacillus Kaustophilus
          Length = 196

 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 41/56 (73%)

Query: 18  RPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHP 73
           R  + VY GQ DDSRP+N +PVTG  IR A++ +L G+PV   QKPS+GCSIKW P
Sbjct: 139 RDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRPVPEKQKPSIGCSIKWKP 194


>pdb|3U5R|E Chain E, Crystal Structure Of A Hypothetical Protein Smc02350 From
           Sinorhizobium Meliloti 1021
 pdb|3U5R|F Chain F, Crystal Structure Of A Hypothetical Protein Smc02350 From
           Sinorhizobium Meliloti 1021
 pdb|3U5R|G Chain G, Crystal Structure Of A Hypothetical Protein Smc02350 From
           Sinorhizobium Meliloti 1021
 pdb|3U5R|H Chain H, Crystal Structure Of A Hypothetical Protein Smc02350 From
           Sinorhizobium Meliloti 1021
          Length = 218

 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 40/54 (74%)

Query: 18  RPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 71
           R  +LVYHGQFDD+RP N   VTG D+R A++ VL G+ V + Q PS+GC+IKW
Sbjct: 152 RERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKDVGTTQVPSIGCNIKW 205


>pdb|2CVB|A Chain A, Crystal Structure Of A Thioredoxin-Like Protein From
           Thermus Thermophilus Hb8
 pdb|2YWO|A Chain A, Crystal Structure Of Reduced Thioredoxin-Like Protein From
           Thermus Thermophilus Hb8
          Length = 188

 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 15  DGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHP 73
           D RR   L YHG+ +D+ P +   V   D+  AIE +L G+     + P++GC+IKW P
Sbjct: 124 DERR--LLRYHGRVNDN-PKDPSKVQSHDLEAAIEALLRGEEPPLKEAPAIGCTIKWRP 179


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,342,310
Number of Sequences: 62578
Number of extensions: 79519
Number of successful extensions: 115
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112
Number of HSP's gapped (non-prelim): 3
length of query: 77
length of database: 14,973,337
effective HSP length: 46
effective length of query: 31
effective length of database: 12,094,749
effective search space: 374937219
effective search space used: 374937219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)