Query 034969
Match_columns 77
No_of_seqs 118 out of 514
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 08:08:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02969 PRX_like1 Peroxiredoxi 99.1 4.1E-10 8.9E-15 75.8 5.7 52 20-71 120-171 (171)
2 PTZ00253 tryparedoxin peroxida 97.7 2E-05 4.4E-10 54.9 1.8 50 22-75 125-181 (199)
3 smart00685 DM14 Repeats in fly 80.8 1.9 4.1E-05 25.8 2.5 23 42-64 35-57 (59)
4 COG1311 HYS2 Archaeal DNA poly 65.8 4.8 0.0001 32.9 2.2 49 9-60 349-398 (481)
5 cd03016 PRX_1cys Peroxiredoxin 62.3 19 0.00041 25.0 4.4 53 10-75 119-171 (203)
6 PF05225 HTH_psq: helix-turn-h 61.9 9.4 0.0002 21.0 2.3 16 40-55 1-16 (45)
7 PRK13190 putative peroxiredoxi 56.5 28 0.0006 24.3 4.4 53 10-75 119-171 (202)
8 PHA02516 W baseplate wedge sub 55.7 16 0.00034 23.2 2.9 31 40-70 11-41 (103)
9 PHA03303 envelope glycoprotein 51.4 13 0.00028 26.4 2.1 31 38-68 117-147 (159)
10 PRK08315 AMP-binding domain pr 49.6 18 0.00038 27.6 2.7 33 19-51 440-472 (559)
11 KOG1507 Nucleosome assembly pr 49.0 7.9 0.00017 30.6 0.8 16 60-75 243-258 (358)
12 cd03015 PRX_Typ2cys Peroxiredo 48.2 51 0.0011 21.9 4.6 52 10-74 122-173 (173)
13 PRK08279 long-chain-acyl-CoA s 46.8 19 0.0004 28.1 2.5 33 19-51 452-484 (600)
14 TIGR01217 ac_ac_CoA_syn acetoa 46.4 21 0.00046 28.5 2.9 33 19-51 512-544 (652)
15 COG3628 Phage baseplate assemb 45.0 39 0.00086 22.8 3.6 32 39-70 17-48 (116)
16 PF04486 SchA_CurD: SchA/CurD 44.9 7.7 0.00017 26.0 0.1 49 6-54 38-86 (114)
17 COG0117 RibD Pyrimidine deamin 44.7 32 0.0007 24.0 3.2 31 40-71 6-36 (146)
18 PLN03051 acyl-activating enzym 44.4 24 0.00052 26.9 2.8 32 19-50 370-401 (499)
19 PRK09192 acyl-CoA synthetase; 43.3 23 0.0005 27.5 2.5 33 19-51 451-483 (579)
20 PRK03640 O-succinylbenzoic aci 41.4 25 0.00054 26.1 2.4 33 19-51 373-405 (483)
21 PRK05851 long-chain-fatty-acid 40.9 21 0.00045 27.4 2.0 33 19-51 408-440 (525)
22 PHA00415 25 baseplate wedge su 40.1 37 0.0008 22.8 2.9 31 39-69 28-58 (131)
23 PRK13390 acyl-CoA synthetase; 39.3 39 0.00085 25.4 3.2 33 19-51 392-424 (501)
24 TIGR02372 4_coum_CoA_lig 4-cou 37.7 24 0.00053 26.9 1.9 33 19-51 288-320 (386)
25 PRK06334 long chain fatty acid 36.5 29 0.00063 26.9 2.2 33 19-51 423-455 (539)
26 PRK06839 acyl-CoA synthetase; 36.5 28 0.0006 25.9 2.0 33 19-51 384-416 (496)
27 cd06401 PB1_TFG The PB1 domain 36.0 1.1E+02 0.0025 19.3 4.8 32 38-74 20-51 (81)
28 PRK12583 acyl-CoA synthetase; 35.6 36 0.00077 25.9 2.5 32 19-50 441-472 (558)
29 PRK07824 O-succinylbenzoic aci 35.3 30 0.00065 24.9 2.0 33 19-51 246-278 (358)
30 PTZ00007 (NAP-L) nucleosome as 35.1 18 0.0004 28.1 0.9 14 62-75 179-192 (337)
31 PRK10524 prpE propionyl-CoA sy 34.7 40 0.00086 26.5 2.7 33 19-51 486-518 (629)
32 PRK07514 malonyl-CoA synthase; 34.2 36 0.00078 25.4 2.3 33 19-51 390-422 (504)
33 PF00383 dCMP_cyt_deam_1: Cyti 33.9 44 0.00095 20.1 2.3 29 40-71 4-32 (102)
34 PRK08751 putative long-chain f 33.7 42 0.00091 25.7 2.6 33 19-51 450-482 (560)
35 TIGR03098 ligase_PEP_1 acyl-Co 33.7 43 0.00093 25.0 2.6 33 19-51 407-439 (515)
36 PRK03584 acetoacetyl-CoA synth 33.6 42 0.0009 26.6 2.7 32 19-50 511-542 (655)
37 PRK06145 acyl-CoA synthetase; 33.2 39 0.00085 25.2 2.3 33 19-51 386-418 (497)
38 PRK09029 O-succinylbenzoic aci 32.9 38 0.00083 25.2 2.2 33 19-51 344-376 (458)
39 PRK07008 long-chain-fatty-acid 32.7 42 0.00091 25.7 2.5 32 19-50 422-453 (539)
40 PRK10382 alkyl hydroperoxide r 32.0 1.2E+02 0.0026 21.1 4.5 55 9-75 120-174 (187)
41 cd01271 Fe65_C Fe65 C-terminal 32.0 65 0.0014 21.9 3.1 33 19-56 3-35 (124)
42 PRK07656 long-chain-fatty-acid 31.9 41 0.0009 25.0 2.3 33 19-51 405-437 (513)
43 PRK07769 long-chain-fatty-acid 31.8 38 0.00082 26.7 2.2 32 19-50 476-507 (631)
44 PRK06814 acylglycerophosphoeth 31.8 48 0.001 28.1 2.8 33 19-51 1023-1055(1140)
45 PRK07798 acyl-CoA synthetase; 31.8 51 0.0011 24.6 2.7 33 19-51 421-453 (533)
46 PLN03052 acetate--CoA ligase; 31.7 49 0.0011 27.3 2.8 31 19-49 602-632 (728)
47 PRK09088 acyl-CoA synthetase; 31.6 37 0.00081 25.3 2.0 33 19-51 374-406 (488)
48 PRK07638 acyl-CoA synthetase; 31.6 46 0.001 24.9 2.5 33 19-51 374-406 (487)
49 TIGR03443 alpha_am_amid L-amin 31.4 38 0.00081 29.4 2.2 33 19-51 691-723 (1389)
50 PLN03102 acyl-activating enzym 31.4 43 0.00093 26.2 2.4 33 19-51 433-465 (579)
51 PRK07470 acyl-CoA synthetase; 31.1 38 0.00082 25.6 2.0 33 19-51 407-439 (528)
52 PRK07768 long-chain-fatty-acid 30.8 47 0.001 25.3 2.4 32 19-50 427-458 (545)
53 PRK07788 acyl-CoA synthetase; 30.7 45 0.00097 25.5 2.3 33 19-51 440-472 (549)
54 TIGR02188 Ac_CoA_lig_AcsA acet 30.6 44 0.00094 26.2 2.3 33 19-51 488-520 (625)
55 PRK00174 acetyl-CoA synthetase 30.6 46 0.001 26.2 2.5 33 19-51 496-528 (637)
56 PF13590 DUF4136: Domain of un 30.4 1.1E+02 0.0024 19.3 3.9 37 19-57 114-150 (151)
57 PLN02246 4-coumarate--CoA liga 30.4 35 0.00076 26.0 1.7 33 19-51 425-457 (537)
58 TIGR02316 propion_prpE propion 30.3 49 0.0011 26.1 2.6 33 19-51 485-517 (628)
59 COG0365 Acs Acyl-coenzyme A sy 30.1 67 0.0014 26.3 3.3 38 12-51 404-441 (528)
60 PRK07529 AMP-binding domain pr 30.1 50 0.0011 26.2 2.6 33 19-51 458-490 (632)
61 PRK06164 acyl-CoA synthetase; 30.0 53 0.0011 25.0 2.6 33 19-51 419-451 (540)
62 PRK06155 crotonobetaine/carnit 29.5 40 0.00087 26.0 1.9 33 19-51 413-445 (542)
63 PRK13599 putative peroxiredoxi 29.2 1.5E+02 0.0034 20.9 4.8 52 9-73 120-171 (215)
64 PRK07445 O-succinylbenzoic aci 29.1 46 0.001 25.3 2.2 33 19-51 337-369 (452)
65 PRK08162 acyl-CoA synthetase; 29.0 44 0.00094 25.4 2.0 32 19-50 429-460 (545)
66 cd06398 PB1_Joka2 The PB1 doma 29.0 1.1E+02 0.0023 19.3 3.5 42 11-56 37-78 (91)
67 PRK08633 2-acyl-glycerophospho 28.9 63 0.0014 27.0 3.1 34 19-52 1032-1065(1146)
68 PF11713 Peptidase_C80: Peptid 28.8 70 0.0015 21.9 2.9 61 9-70 32-114 (157)
69 cd01216 Fe65 Fe65 Phosphotyros 28.5 95 0.0021 20.4 3.4 33 19-56 3-35 (123)
70 PRK09274 peptide synthase; Pro 28.3 45 0.00098 25.5 2.0 33 19-51 433-465 (552)
71 PF00956 NAP: Nucleosome assem 28.1 21 0.00045 25.7 0.1 14 62-75 148-161 (244)
72 TIGR02275 DHB_AMP_lig 2,3-dihy 28.1 64 0.0014 24.5 2.8 33 19-51 421-453 (527)
73 PLN02860 o-succinylbenzoate-Co 27.9 58 0.0013 25.2 2.5 33 19-51 427-459 (563)
74 PRK12406 long-chain-fatty-acid 27.6 47 0.001 25.0 2.0 33 19-51 392-424 (509)
75 PRK08314 long-chain-fatty-acid 27.5 53 0.0011 24.9 2.2 33 19-51 429-461 (546)
76 TIGR01923 menE O-succinylbenzo 27.4 68 0.0015 23.4 2.7 32 19-50 333-364 (436)
77 PTZ00237 acetyl-CoA synthetase 27.4 47 0.001 26.6 2.0 32 19-50 505-536 (647)
78 PRK04813 D-alanine--poly(phosp 27.1 42 0.00092 24.9 1.6 33 19-51 388-420 (503)
79 TIGR03357 VI_zyme type VI secr 26.6 1.5E+02 0.0033 19.1 4.1 31 38-68 20-54 (133)
80 PRK05852 acyl-CoA synthetase; 26.5 49 0.0011 25.2 1.9 33 19-51 421-453 (534)
81 PRK08008 caiC putative crotono 26.5 62 0.0013 24.4 2.4 32 19-50 411-442 (517)
82 PRK05850 acyl-CoA synthetase; 26.1 58 0.0013 25.1 2.3 33 19-51 449-481 (578)
83 PTZ00032 60S ribosomal protein 26.0 25 0.00054 26.0 0.2 17 7-28 181-197 (211)
84 PRK06087 short chain acyl-CoA 25.9 78 0.0017 24.1 2.9 33 19-51 423-455 (547)
85 PRK06178 acyl-CoA synthetase; 25.7 62 0.0013 24.9 2.3 32 19-50 455-486 (567)
86 PRK08308 acyl-CoA synthetase; 25.4 61 0.0013 23.9 2.2 32 19-50 304-335 (414)
87 PRK08043 bifunctional acyl-[ac 25.3 71 0.0015 25.8 2.7 32 19-50 604-635 (718)
88 PF09636 XkdW: XkdW protein; 25.2 92 0.002 20.8 2.8 24 37-60 41-64 (108)
89 PRK06018 putative acyl-CoA syn 24.8 68 0.0015 24.5 2.4 33 19-51 423-455 (542)
90 PRK13295 cyclohexanecarboxylat 24.7 72 0.0016 24.4 2.5 32 19-50 432-463 (547)
91 PRK13382 acyl-CoA synthetase; 24.7 67 0.0015 24.7 2.4 33 19-51 429-461 (537)
92 PRK07867 acyl-CoA synthetase; 24.1 60 0.0013 25.0 2.0 33 19-51 394-426 (529)
93 PRK13189 peroxiredoxin; Provis 24.0 1.9E+02 0.004 20.6 4.4 53 10-75 128-180 (222)
94 PLN02861 long-chain-fatty-acid 23.9 83 0.0018 25.3 2.9 32 19-50 506-538 (660)
95 TIGR01733 AA-adenyl-dom amino 23.9 51 0.0011 23.6 1.5 32 19-50 368-399 (408)
96 PF01871 AMMECR1: AMMECR1; In 23.9 65 0.0014 22.4 2.0 32 42-73 3-41 (171)
97 PRK04319 acetyl-CoA synthetase 23.7 73 0.0016 24.6 2.4 33 19-51 445-477 (570)
98 cd07387 MPP_PolD2_C PolD2 (DNA 23.5 40 0.00086 25.1 0.9 51 11-67 138-189 (257)
99 PLN02479 acetate-CoA ligase 23.5 73 0.0016 24.7 2.4 32 19-50 443-474 (567)
100 PRK12476 putative fatty-acid-- 23.5 78 0.0017 24.9 2.6 32 19-50 488-519 (612)
101 PRK08276 long-chain-fatty-acid 23.4 75 0.0016 23.8 2.4 32 19-50 382-413 (502)
102 PLN02330 4-coumarate--CoA liga 23.4 63 0.0014 24.7 2.0 33 19-51 430-462 (546)
103 PLN02614 long-chain acyl-CoA s 23.0 90 0.0019 25.3 2.9 32 19-50 509-541 (666)
104 PRK07786 long-chain-fatty-acid 22.7 87 0.0019 24.0 2.6 32 19-50 412-443 (542)
105 PRK10252 entF enterobactin syn 22.7 58 0.0013 27.8 1.8 32 19-50 850-881 (1296)
106 PRK14651 UDP-N-acetylenolpyruv 22.7 1.1E+02 0.0024 23.0 3.2 33 38-71 169-201 (273)
107 PF07660 STN: Secretin and Ton 22.6 36 0.00079 18.3 0.4 21 39-59 20-40 (52)
108 PRK00014 ribB 3,4-dihydroxy-2- 22.5 75 0.0016 23.6 2.2 18 42-59 19-36 (230)
109 PRK05677 long-chain-fatty-acid 22.5 71 0.0015 24.6 2.2 33 19-51 446-478 (562)
110 PRK05605 long-chain-fatty-acid 22.5 93 0.002 23.9 2.8 33 19-51 458-490 (573)
111 KOG4117 Heat shock factor bind 22.4 63 0.0014 20.1 1.5 30 25-60 40-69 (73)
112 PRK06187 long-chain-fatty-acid 22.4 84 0.0018 23.3 2.4 32 19-50 408-439 (521)
113 PRK08316 acyl-CoA synthetase; 22.0 68 0.0015 23.9 1.9 33 19-51 408-440 (523)
114 PRK07868 acyl-CoA synthetase; 22.0 76 0.0017 27.2 2.4 32 19-50 849-880 (994)
115 TIGR00296 uncharacterized prot 21.9 1.8E+02 0.0039 20.8 4.0 32 41-72 13-51 (200)
116 PRK05857 acyl-CoA synthetase; 21.5 1E+02 0.0022 23.7 2.8 32 19-50 415-446 (540)
117 cd06406 PB1_P67 A PB1 domain i 21.5 1.8E+02 0.0039 18.3 3.5 32 19-54 40-71 (80)
118 PRK05614 gltA type II citrate 21.4 71 0.0015 25.4 2.0 25 6-31 54-79 (419)
119 PRK06188 acyl-CoA synthetase; 21.3 1.1E+02 0.0023 23.2 2.8 32 19-50 406-437 (524)
120 PLN02654 acetate-CoA ligase 21.2 86 0.0019 25.2 2.4 33 19-51 526-558 (666)
121 PLN02574 4-coumarate--CoA liga 21.1 83 0.0018 24.3 2.3 32 19-50 443-474 (560)
122 PF06296 DUF1044: Protein of u 20.8 1.8E+02 0.0039 19.4 3.6 31 38-72 17-47 (120)
123 PRK15000 peroxidase; Provision 20.7 2.2E+02 0.0047 19.8 4.2 53 10-75 127-179 (200)
124 PRK10946 entE enterobactin syn 20.6 98 0.0021 23.7 2.6 33 19-51 422-454 (536)
125 PTZ00137 2-Cys peroxiredoxin; 20.5 2.5E+02 0.0054 20.9 4.6 53 10-75 190-242 (261)
126 PF00926 DHBP_synthase: 3,4-di 20.3 65 0.0014 23.1 1.5 16 44-59 1-16 (194)
127 PF02873 MurB_C: UDP-N-acetyle 20.1 42 0.00091 21.7 0.4 30 42-71 2-32 (105)
No 1
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.05 E-value=4.1e-10 Score=75.75 Aligned_cols=52 Identities=60% Similarity=1.122 Sum_probs=45.8
Q ss_pred eEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeee
Q 034969 20 FQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 71 (77)
Q Consensus 20 ~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKw 71 (77)
++|+|+|.+++.+.......+.++|++||+++|+|+..+.++|++.||+++|
T Consensus 120 G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 171 (171)
T cd02969 120 GKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPVPQTPSIGCSIKW 171 (171)
T ss_pred CeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCCccccCCCCcccCC
Confidence 5699999999875433345689999999999999999999999999999999
No 2
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.68 E-value=2e-05 Score=54.88 Aligned_cols=50 Identities=22% Similarity=0.435 Sum_probs=36.2
Q ss_pred EEEeee--ccCCCC-----CCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969 22 LVYHGQ--FDDSRP-----SNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 75 (77)
Q Consensus 22 L~Y~Gr--IDD~~~-----~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~ 75 (77)
+.|+|. ||.+.. ..+.+ ..++++++++.|.+.+.++. +++||++||++++
T Consensus 125 ~~~r~~fiID~~G~i~~~~~~~~~-~~r~~~e~l~~l~a~~~~~~---~~~~cp~~w~~g~ 181 (199)
T PTZ00253 125 VAYRGLFIIDPKGMLRQITVNDMP-VGRNVEEVLRLLEAFQFVEK---HGEVCPANWKKGD 181 (199)
T ss_pred ceEEEEEEECCCCEEEEEEecCCC-CCCCHHHHHHHHHhhhhHHh---cCCEeCCCCCcCC
Confidence 456666 665532 02223 45688999999999999886 5899999999865
No 3
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=80.76 E-value=1.9 Score=25.83 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCC
Q 034969 42 RDIRLAIECVLSGQPVSSNQKPS 64 (77)
Q Consensus 42 ~yL~~AI~allaGk~v~~~~T~s 64 (77)
.-+++||++.-+|++|+....|+
T Consensus 35 K~~~~~I~~~~aG~pVd~~~lP~ 57 (59)
T smart00685 35 KQFDDAIKAARAGRPVDLSELPP 57 (59)
T ss_pred hhHHHHHHHHHCCCCCChhcCCC
Confidence 34778999999999999998876
No 4
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=65.82 E-value=4.8 Score=32.89 Aligned_cols=49 Identities=22% Similarity=0.223 Sum_probs=37.2
Q ss_pred cceeecCCCCCeEEEEeee-ccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCC
Q 034969 9 SGANSVDGRRPFQLVYHGQ-FDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSN 60 (77)
Q Consensus 9 ~~~~~~~~~~~~~L~Y~Gr-IDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~ 60 (77)
-..+..+| ...|.|||+ |||.-...+ .++.+.-..||+++|.-+-+.+.
T Consensus 349 P~~~~l~G--~~vL~~hG~sidDii~~vP-~~~~~~~~~ame~lLk~rHlaPt 398 (481)
T COG1311 349 PALVSLHG--VDVLIYHGRSIDDIIKLVP-GADYDSPLKAMEELLKRRHLAPT 398 (481)
T ss_pred CcEEEECC--EEEEEecCCCHHHHHhhCC-CCCccchHHHHHHHHHhcccCCC
Confidence 35566677 489999999 998854443 35677889999999998887665
No 5
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=62.33 E-value=19 Score=25.02 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=32.5
Q ss_pred ceeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969 10 GANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 75 (77)
Q Consensus 10 ~~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~ 75 (77)
++|..|.+ |+|+|.=.-+.. . .....++.++|+++.... ....-|...|++|.
T Consensus 119 ~~fiID~~--G~I~~~~~~~~~-~----gr~~~ell~~l~~lq~~~------~~~~~~p~~w~~g~ 171 (203)
T cd03016 119 AVFIIDPD--KKIRLILYYPAT-T----GRNFDEILRVVDALQLTD------KHKVATPANWKPGD 171 (203)
T ss_pred EEEEECCC--CeEEEEEecCCC-C----CCCHHHHHHHHHHHhhHh------hcCcCcCCCCCCCC
Confidence 35666664 567766443222 1 124667888888874433 33688999998765
No 6
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=61.92 E-value=9.4 Score=21.05 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=13.6
Q ss_pred cHHHHHHHHHHHHcCC
Q 034969 40 TGRDIRLAIECVLSGQ 55 (77)
Q Consensus 40 t~~yL~~AI~allaGk 55 (77)
+++.|..||+++..|+
T Consensus 1 tee~l~~Ai~~v~~g~ 16 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK 16 (45)
T ss_dssp -HHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHhCC
Confidence 4678999999999886
No 7
>PRK13190 putative peroxiredoxin; Provisional
Probab=56.51 E-value=28 Score=24.28 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=33.0
Q ss_pred ceeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969 10 GANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 75 (77)
Q Consensus 10 ~~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~ 75 (77)
++|..|.+ ++++|.---+.. ......++-.+|+++....+ ...-|+..|++|+
T Consensus 119 ~~fiId~~--G~I~~~~~~~~~-----~gr~~~ellr~l~~l~~~~~------~~~~~p~~w~~g~ 171 (202)
T PRK13190 119 GVFIIDPN--QIVRWMIYYPAE-----TGRNIDEIIRITKALQVNWK------RKVATPANWQPGQ 171 (202)
T ss_pred EEEEECCC--CEEEEEEEeCCC-----CCCCHHHHHHHHHHhhhHHh------cCCCcCCCCCcCC
Confidence 44555553 678887653222 12356788888888765322 2577899998765
No 8
>PHA02516 W baseplate wedge subunit; Provisional
Probab=55.68 E-value=16 Score=23.24 Aligned_cols=31 Identities=19% Similarity=0.101 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCccceee
Q 034969 40 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIK 70 (77)
Q Consensus 40 t~~yL~~AI~allaGk~v~~~~T~siGCsIK 70 (77)
...+++++|..||.-++-+-...|-+||.+.
T Consensus 11 ~~~~I~qsI~~iL~T~~Ger~~~p~fG~~l~ 41 (103)
T PHA02516 11 DLEHIRQSIGDILLTPLGSRVMRREYGSLLP 41 (103)
T ss_pred CHHHHHHHHHHHHcCCCcccccCcccccchH
Confidence 5779999999999999999999999999863
No 9
>PHA03303 envelope glycoprotein L; Provisional
Probab=51.36 E-value=13 Score=26.37 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=26.1
Q ss_pred CCcHHHHHHHHHHHHcCCCCCCCCCCCccce
Q 034969 38 PVTGRDIRLAIECVLSGQPVSSNQKPSVGCS 68 (77)
Q Consensus 38 ~vt~~yL~~AI~allaGk~v~~~~T~siGCs 68 (77)
..++.-|-+|+...+++++-....+|+.||-
T Consensus 117 ~d~r~aL~~al~~al~sr~d~st~pp~~GCV 147 (159)
T PHA03303 117 DDIRDALLDALSGALQDRGDISTDIPDIGCV 147 (159)
T ss_pred hHHHHHHHHHHHHHHhcCCccccCCCCCCcc
Confidence 3456668888999999999999999999995
No 10
>PRK08315 AMP-binding domain protein; Validated
Probab=49.59 E-value=18 Score=27.58 Aligned_cols=33 Identities=12% Similarity=-0.016 Sum_probs=24.7
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.+.|.||+||.-...+..+.-.++++++.+.
T Consensus 440 dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~ 472 (559)
T PRK08315 440 EGYVNIVGRIKDMIIRGGENIYPREIEEFLYTH 472 (559)
T ss_pred CceEEEEeeccceEEECCEEEcHHHHHHHHHhC
Confidence 467999999999865555566667788877654
No 11
>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.01 E-value=7.9 Score=30.62 Aligned_cols=16 Identities=31% Similarity=0.877 Sum_probs=12.9
Q ss_pred CCCCCccceeeeeCCC
Q 034969 60 NQKPSVGCSIKWHPQT 75 (77)
Q Consensus 60 ~~T~siGCsIKwk~~~ 75 (77)
.-..+.||.|.|++++
T Consensus 243 ~i~~~~Gc~IdW~~gk 258 (358)
T KOG1507|consen 243 EIEKCEGCEIDWKPGK 258 (358)
T ss_pred eEEeeecCeeeccCCC
Confidence 3457899999998875
No 12
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=48.21 E-value=51 Score=21.86 Aligned_cols=52 Identities=12% Similarity=0.170 Sum_probs=28.8
Q ss_pred ceeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCC
Q 034969 10 GANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ 74 (77)
Q Consensus 10 ~~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~ 74 (77)
..|..|.+ ++|+|+-. ...+. . . ....+.++|+.+ .....+-.-|...|++|
T Consensus 122 ~~~lID~~--G~I~~~~~-~~~~~-~--~-~~~~il~~l~~~------~~~~~~~~~~~~~~~~~ 173 (173)
T cd03015 122 GTFIIDPE--GIIRHITV-NDLPV-G--R-SVDETLRVLDAL------QFVEEHGEVCPANWKPG 173 (173)
T ss_pred EEEEECCC--CeEEEEEe-cCCCC-C--C-CHHHHHHHHHHh------hhhhhcCCCcCCCCCCC
Confidence 45566654 66888874 22211 1 1 233455555554 33335556789999875
No 13
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=46.83 E-value=19 Score=28.06 Aligned_cols=33 Identities=9% Similarity=0.023 Sum_probs=25.3
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.|.||+||.-...+..+.-.+++++|...
T Consensus 452 dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~ 484 (600)
T PRK08279 452 FGHAQFVDRLGDTFRWKGENVATTEVENALSGF 484 (600)
T ss_pred CccEEEecccCCeEEECCcccCHHHHHHHHhcC
Confidence 467999999999866556667777888887653
No 14
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=46.41 E-value=21 Score=28.54 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=26.0
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
+|.|.+.||.||.-...+..+.-.+++.+|.+.
T Consensus 512 dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~ 544 (652)
T TIGR01217 512 RGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERL 544 (652)
T ss_pred CCcEEEEecccCeEecCCEEcCHHHHHHHHHhC
Confidence 467999999999876666667778888887753
No 15
>COG3628 Phage baseplate assembly protein W [General function prediction only]
Probab=45.02 E-value=39 Score=22.84 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=28.1
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCCCCccceee
Q 034969 39 VTGRDIRLAIECVLSGQPVSSNQKPSVGCSIK 70 (77)
Q Consensus 39 vt~~yL~~AI~allaGk~v~~~~T~siGCsIK 70 (77)
....+++++|..+|..-.-+-.-.|-+||.+-
T Consensus 17 s~~dhirQSi~~IL~Tp~GsRvmRp~yGs~L~ 48 (116)
T COG3628 17 SDLDHIRQSIRDILSTPLGSRVMRPDYGSNLP 48 (116)
T ss_pred cccHHHHHHHHHHHhCCCCccccccccccchH
Confidence 35789999999999998888888999999864
No 16
>PF04486 SchA_CurD: SchA/CurD like domain; InterPro: IPR007575 Proteins having this domain have been identified mainly in species of the Streptomyces genus. Two of them are known to be part of gene clusters involved in the synthesis of polyketide-based spore pigments, homologous to clusters involved in the synthesis of polyketide antibiotics. Their function is unknown, but they has been speculated to contain a NAD(P) binding site []. Many of these proteins contain two copies of the domain.
Probab=44.94 E-value=7.7 Score=26.03 Aligned_cols=49 Identities=16% Similarity=0.105 Sum_probs=33.2
Q ss_pred EeecceeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034969 6 ILSSGANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 54 (77)
Q Consensus 6 ~~~~~~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaG 54 (77)
++++.||..++.==+.+-|.|-+++.-..-..+...+.++.||.-.|.+
T Consensus 38 l~~TtvF~~dd~VVR~vdv~Gdl~a~~rh~a~q~~v~~~e~al~p~L~~ 86 (114)
T PF04486_consen 38 LLRTTVFQRDDRVVRVVDVEGDLDAALRHLARQPGVREVEPALNPYLEE 86 (114)
T ss_pred eEEEEEEEECCEEEEEEEecCCHHHHHHHhhcccccchhhhHhcccccC
Confidence 6889999999862334568888876533223345667777887777765
No 17
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=44.68 E-value=32 Score=24.05 Aligned_cols=31 Identities=35% Similarity=0.515 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCccceeee
Q 034969 40 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 71 (77)
Q Consensus 40 t~~yL~~AI~allaGk~v~~~~T~siGCsIKw 71 (77)
...||+.||+.--.|+- .+...|++||-|--
T Consensus 6 ~~~~M~~Al~lA~k~~g-~T~pNP~VG~VIV~ 36 (146)
T COG0117 6 DERYMERALELAEKGQG-TTSPNPSVGCVIVK 36 (146)
T ss_pred HHHHHHHHHHHHHhcCC-cCCCCCceeEEEEE
Confidence 57899999998777665 45558999998863
No 18
>PLN03051 acyl-activating enzyme; Provisional
Probab=44.37 E-value=24 Score=26.89 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=25.5
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
+|.|.+.||.||.-...+..+.-.+++++|.+
T Consensus 370 dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~~ 401 (499)
T PLN03051 370 GGYFCVQGRADDTMNLGGIKTSSVEIERACDR 401 (499)
T ss_pred CCcEEEEeccCCEEeeCCEECCHHHHHHHHHh
Confidence 46799999999997666667777788888763
No 19
>PRK09192 acyl-CoA synthetase; Validated
Probab=43.34 E-value=23 Score=27.50 Aligned_cols=33 Identities=21% Similarity=0.034 Sum_probs=26.8
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.+.|.||.||.-.-.+..+.-.+++++|+..
T Consensus 451 ~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~ 483 (579)
T PRK09192 451 DGYLYITGRAKDLIIINGRNIWPQDIEWIAEQE 483 (579)
T ss_pred CCEEEEEeccccEEEECCCccCHHHHHHHHHhc
Confidence 457999999999976666777888999988874
No 20
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=41.40 E-value=25 Score=26.10 Aligned_cols=33 Identities=12% Similarity=-0.109 Sum_probs=25.0
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.+.+.||+||.-...+..+.-.++++++.+.
T Consensus 373 ~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~ 405 (483)
T PRK03640 373 EGFLYVLDRRSDLIISGGENIYPAEIEEVLLSH 405 (483)
T ss_pred CCCEEEeecccCeEEeCCEEECHHHHHHHHHhC
Confidence 467999999999866566666677888877653
No 21
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=40.92 E-value=21 Score=27.37 Aligned_cols=33 Identities=15% Similarity=0.033 Sum_probs=26.3
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.|.||+||.-...+..+.-.+++.+|.+.
T Consensus 408 ~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~ 440 (525)
T PRK05851 408 DGGLVVCGRAKELITVAGRNIFPTEIERVAAQV 440 (525)
T ss_pred CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhC
Confidence 357999999999866666677788888888764
No 22
>PHA00415 25 baseplate wedge subunit
Probab=40.08 E-value=37 Score=22.80 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=28.0
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCCCCcccee
Q 034969 39 VTGRDIRLAIECVLSGQPVSSNQKPSVGCSI 69 (77)
Q Consensus 39 vt~~yL~~AI~allaGk~v~~~~T~siGCsI 69 (77)
.....+++.|..||..++-+-..-|-+||-+
T Consensus 28 ~~~~sI~qsI~~IL~T~~GER~~rPdfG~~l 58 (131)
T PHA00415 28 KGARAIKNSLLGIVTTRKGERPFDPNFGCDI 58 (131)
T ss_pred CCHHHHHHHHHHHhCCCCCccccCcccCcch
Confidence 3567899999999999999999999999965
No 23
>PRK13390 acyl-CoA synthetase; Provisional
Probab=39.25 E-value=39 Score=25.37 Aligned_cols=33 Identities=9% Similarity=-0.107 Sum_probs=24.8
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.+.||.||.-...+..+.-.+++++|.+.
T Consensus 392 dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~ 424 (501)
T PRK13390 392 DGYLYLADRKSFMIISGGVNIYPQETENALTMH 424 (501)
T ss_pred CCeEEEeeccccceeECCeeeCHHHHHHHHHhC
Confidence 467999999999976666666677777777543
No 24
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=37.69 E-value=24 Score=26.88 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=25.0
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.+.||.||.-...+..+.-.+++++|.+.
T Consensus 288 ~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~ 320 (386)
T TIGR02372 288 DGGFTILGRKDEILQVGGVNVSPGHVRDILERN 320 (386)
T ss_pred CCcEEEecccCCEEEECCEEEcHHHHHHHHHcC
Confidence 367999999999866556666777777777764
No 25
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=36.48 E-value=29 Score=26.87 Aligned_cols=33 Identities=9% Similarity=-0.063 Sum_probs=26.5
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.+.||.||.-...+..+.-.+++++|.+.
T Consensus 423 ~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~ 455 (539)
T PRK06334 423 HGELFLKGRLSRFVKIGAEMVSLEALESILMEG 455 (539)
T ss_pred CCeEEEEeccCCeEEECCEEECHHHHHHHHHHc
Confidence 577999999999866666677788888888764
No 26
>PRK06839 acyl-CoA synthetase; Validated
Probab=36.45 E-value=28 Score=25.89 Aligned_cols=33 Identities=9% Similarity=-0.034 Sum_probs=24.0
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.+.+.||.||.-...+..+.-.+++++|..+
T Consensus 384 ~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~ 416 (496)
T PRK06839 384 DGFVYIVGRKKEMIISGGENIYPLEVEQVINKL 416 (496)
T ss_pred CCcEEEeccccceEEECCEEECHHHHHHHHHhC
Confidence 467899999999865555566667788777653
No 27
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=35.96 E-value=1.1e+02 Score=19.27 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=25.1
Q ss_pred CCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCC
Q 034969 38 PVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ 74 (77)
Q Consensus 38 ~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~ 74 (77)
..+-.+|++.+..+..++-++...- .|||++.
T Consensus 20 ~~t~~~L~~~v~~~F~~~~~~~~~f-----lIKYkD~ 51 (81)
T cd06401 20 DITYDELLLMMQRVFRGKLGSSDDV-----LIKYKDE 51 (81)
T ss_pred cccHHHHHHHHHHHhccccCCcccE-----EEEEECC
Confidence 3588899999999999876555444 8999875
No 28
>PRK12583 acyl-CoA synthetase; Provisional
Probab=35.63 E-value=36 Score=25.87 Aligned_cols=32 Identities=13% Similarity=-0.042 Sum_probs=24.3
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.+.+.||.||.-...+..+.-.++++++..
T Consensus 441 dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~ 472 (558)
T PRK12583 441 QGYVRIVGRSKDMIIRGGENIYPREIEEFLFT 472 (558)
T ss_pred CccEEEEecccceeEECCEEeCHHHHHHHHHh
Confidence 46799999999986555566667788877754
No 29
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=35.25 E-value=30 Score=24.88 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=24.8
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.+.||+||.-...+..+.-.+++.+|.+.
T Consensus 246 ~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~ 278 (358)
T PRK07824 246 DGVLTVLGRADDAISTGGLTVLPQVVEAALATH 278 (358)
T ss_pred CCEEEEEeccCCeEEECCEEECHHHHHHHHHhC
Confidence 457999999999976556666677777777654
No 30
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=35.08 E-value=18 Score=28.10 Aligned_cols=14 Identities=21% Similarity=0.537 Sum_probs=11.5
Q ss_pred CCCccceeeeeCCC
Q 034969 62 KPSVGCSIKWHPQT 75 (77)
Q Consensus 62 T~siGCsIKwk~~~ 75 (77)
..+.||.|+|++|.
T Consensus 179 ~~~~~t~I~WK~Gk 192 (337)
T PTZ00007 179 SNTVATEIDWKQGK 192 (337)
T ss_pred ecceeeeceeeCCC
Confidence 46779999999874
No 31
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=34.65 E-value=40 Score=26.48 Aligned_cols=33 Identities=18% Similarity=0.095 Sum_probs=25.2
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.+.||.||.-...+..+.-.+++++|.+.
T Consensus 486 dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~ 518 (629)
T PRK10524 486 DGYYFILGRTDDVINVAGHRLGTREIEESISSH 518 (629)
T ss_pred CCcEEEEEEecCeEEeCCEEeCHHHHHHHHHhC
Confidence 467999999999865556666777888888653
No 32
>PRK07514 malonyl-CoA synthase; Validated
Probab=34.16 E-value=36 Score=25.40 Aligned_cols=33 Identities=15% Similarity=0.026 Sum_probs=24.9
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.+.+.||.||.-...+..+.-.++++++..+
T Consensus 390 ~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~ 422 (504)
T PRK07514 390 RGYVHIVGRGKDLIISGGYNVYPKEVEGEIDEL 422 (504)
T ss_pred CccEEEeccccceEEeCCeEECHHHHHHHHHhC
Confidence 356999999999865556666677888887654
No 33
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=33.89 E-value=44 Score=20.09 Aligned_cols=29 Identities=24% Similarity=0.173 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCccceeee
Q 034969 40 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 71 (77)
Q Consensus 40 t~~yL~~AI~allaGk~v~~~~T~siGCsIKw 71 (77)
.+++|+.|++...... .....++||-|--
T Consensus 4 ~~~~m~~a~~~a~~s~---~~~~~~vgaviv~ 32 (102)
T PF00383_consen 4 DEEFMRIAIELAKRSR---PCGNFPVGAVIVD 32 (102)
T ss_dssp HHHHHHHHHHHHHTHB---TTTSSSEEEEEEE
T ss_pred HHHHHHHHHHHHHhcc---ccCCCCEEEEEEe
Confidence 4678999999888776 6668899999865
No 34
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=33.73 E-value=42 Score=25.68 Aligned_cols=33 Identities=12% Similarity=-0.029 Sum_probs=25.5
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.+.+.||.||.-...+..+.-.+++.++..+
T Consensus 450 ~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~ 482 (560)
T PRK08751 450 QGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMM 482 (560)
T ss_pred CceEEEEeechhheeECCEEEcHHHHHHHHHhC
Confidence 467999999999866566666777888888654
No 35
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=33.68 E-value=43 Score=25.00 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=25.2
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.+.||.||.-...+..+.-.+++++|..+
T Consensus 407 ~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~ 439 (515)
T TIGR03098 407 EGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYAT 439 (515)
T ss_pred CceEEEEeccccceecCCEEeCHHHHHHHHhcC
Confidence 467999999999866666667777888877643
No 36
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=33.55 E-value=42 Score=26.63 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=24.4
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
+|.|.+.||.||.-...+..+.-.+++.+|.+
T Consensus 511 dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~ 542 (655)
T PRK03584 511 HGGVVIYGRSDATLNRGGVRIGTAEIYRQVEA 542 (655)
T ss_pred CCeEEEEeeccCeeecCcEEECHHHHHHHHHh
Confidence 46799999999996655556667777777764
No 37
>PRK06145 acyl-CoA synthetase; Validated
Probab=33.18 E-value=39 Score=25.22 Aligned_cols=33 Identities=12% Similarity=-0.010 Sum_probs=25.6
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.+.||.||.-...+..+.-.+++.+|..+
T Consensus 386 ~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~ 418 (497)
T PRK06145 386 EGFLYLTDRKKDMIISGGENIASSEVERVIYEL 418 (497)
T ss_pred CCcEEEeccccceEEeCCeEECHHHHHHHHHhC
Confidence 467999999999865556667777888888764
No 38
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=32.87 E-value=38 Score=25.17 Aligned_cols=33 Identities=18% Similarity=0.112 Sum_probs=24.8
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.+.||.||.-...+..+.-.+++++|...
T Consensus 344 ~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~ 376 (458)
T PRK09029 344 NGELTILGRLDNLFFSGGEGIQPEEIERVINQH 376 (458)
T ss_pred CCEEEEecccccceeeCCEEeCHHHHHHHHhcC
Confidence 357999999999865555666777888887654
No 39
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=32.72 E-value=42 Score=25.74 Aligned_cols=32 Identities=13% Similarity=-0.064 Sum_probs=22.9
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.+.+.||+||.-...+..+.-.++++++..
T Consensus 422 dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~ 453 (539)
T PRK07008 422 DGFMQITDRSKDVIKSGGEWISSIDIENVAVA 453 (539)
T ss_pred CCcEEEeecccCEEEeCCeEEcHHHHHHHHHh
Confidence 36689999999986555555566677776654
No 40
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=32.01 E-value=1.2e+02 Score=21.11 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=31.7
Q ss_pred cceeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969 9 SGANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 75 (77)
Q Consensus 9 ~~~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~ 75 (77)
-++|..|.+ |+++|.=.-+.. ......++-++|+++-.-+ .+.=.-|...|++++
T Consensus 120 r~tfIID~~--G~I~~~~~~~~~-----~~~~~~eil~~l~alq~~~-----~~~g~~~p~~w~~~~ 174 (187)
T PRK10382 120 RATFVVDPQ--GIIQAIEVTAEG-----IGRDASDLLRKIKAAQYVA-----SHPGEVCPAKWKEGE 174 (187)
T ss_pred eEEEEECCC--CEEEEEEEeCCC-----CCCCHHHHHHHHHhhhhHh-----hcCCeEeCCCCCcCC
Confidence 344556553 678888542212 1124667777777776522 222366899998764
No 41
>cd01271 Fe65_C Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=32.00 E-value=65 Score=21.92 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=25.6
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP 56 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~ 56 (77)
.+++.|-|-+. .+.+...+-|.+||+.|++..+
T Consensus 3 ~f~~~yLG~~~-----V~~p~Gmdvln~AI~~l~~~~~ 35 (124)
T cd01271 3 VFRVQYLGMLP-----VDKPTGMEILNSAIDNLMSSSN 35 (124)
T ss_pred EEEEEEeccEe-----ecCCccHHHHHHHHHHHHhcCC
Confidence 47889999863 3345677889999999998776
No 42
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=31.91 E-value=41 Score=25.00 Aligned_cols=33 Identities=9% Similarity=-0.119 Sum_probs=24.7
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.+.+.||.||.-...+..+.-.+++++|..+
T Consensus 405 ~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 437 (513)
T PRK07656 405 EGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEH 437 (513)
T ss_pred CeeEEEEecccceEEeCCEEeCHHHHHHHHHhC
Confidence 467999999999865555566667788877654
No 43
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=31.85 E-value=38 Score=26.66 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=25.6
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.|.|.||.||.-...+..+.-.+++.+|.+
T Consensus 476 dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~ 507 (631)
T PRK07769 476 DGELYITGRVKDLVIIDGRNHYPQDLEYTAQE 507 (631)
T ss_pred CCEEEEEcccccEEEECCeeeCHHHHHHHHHh
Confidence 46799999999997666677777888888764
No 44
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=31.80 E-value=48 Score=28.06 Aligned_cols=33 Identities=3% Similarity=-0.135 Sum_probs=26.1
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.|.||.||.-...+..+.-.++++++.+.
T Consensus 1023 dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~ 1055 (1140)
T PRK06814 1023 EGFITIKGRAKRFAKIAGEMISLAAVEELAAEL 1055 (1140)
T ss_pred CCeEEEEecccCeeeeCCEEECHHHHHHHHHhc
Confidence 477999999999866666667777888887765
No 45
>PRK07798 acyl-CoA synthetase; Validated
Probab=31.75 E-value=51 Score=24.60 Aligned_cols=33 Identities=9% Similarity=-0.003 Sum_probs=24.4
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.+.||.||.-...+..+.-.+++.++.+.
T Consensus 421 ~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~ 453 (533)
T PRK07798 421 DGTITLLGRGSVCINTGGEKVFPEEVEEALKAH 453 (533)
T ss_pred CCcEEEEccccceEecCCEEeCHHHHHHHHHhC
Confidence 467899999999866566666667777777653
No 46
>PLN03052 acetate--CoA ligase; Provisional
Probab=31.69 E-value=49 Score=27.32 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=25.2
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 49 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~ 49 (77)
+|-|.+.||.||.-...+..+...++++++.
T Consensus 602 dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~ 632 (728)
T PLN03052 602 GGYYRAHGRADDTMNLGGIKVSSVEIERVCN 632 (728)
T ss_pred CCeEEEEecCCCEEeeCCEEeCHHHHHHHHH
Confidence 4679999999999766676777888888874
No 47
>PRK09088 acyl-CoA synthetase; Validated
Probab=31.63 E-value=37 Score=25.34 Aligned_cols=33 Identities=12% Similarity=-0.135 Sum_probs=23.8
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.+.+.||.||.-...+..+.-.+++++|...
T Consensus 374 ~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~ 406 (488)
T PRK09088 374 DGFFWVVDRKKDMFISGGENVYPAEIEAVLADH 406 (488)
T ss_pred CCcEEEeccccceEEeCCEEECHHHHHHHHHhC
Confidence 467999999999865555556667777777543
No 48
>PRK07638 acyl-CoA synthetase; Validated
Probab=31.59 E-value=46 Score=24.88 Aligned_cols=33 Identities=6% Similarity=-0.054 Sum_probs=24.7
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.+.||.||.-...+..+.-.+++++|.+.
T Consensus 374 ~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~ 406 (487)
T PRK07638 374 EGFIYIVGREKNMILFGGINIFPEEIESVLHEH 406 (487)
T ss_pred CCeEEEEecCCCeEEeCCEEECHHHHHHHHHhC
Confidence 467999999999865555566677888877654
No 49
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=31.44 E-value=38 Score=29.42 Aligned_cols=33 Identities=12% Similarity=0.065 Sum_probs=25.6
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
+|.|.|.||.||.-..++..+.-.+++.+|.+.
T Consensus 691 dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~~~ 723 (1389)
T TIGR03443 691 DGNVECCGRADDQVKIRGFRIELGEIDTHLSQH 723 (1389)
T ss_pred CCCEEEecccCCEEEeCcEEecHHHHHHHHHhC
Confidence 467999999999976666666677888877653
No 50
>PLN03102 acyl-activating enzyme; Provisional
Probab=31.36 E-value=43 Score=26.18 Aligned_cols=33 Identities=6% Similarity=-0.057 Sum_probs=24.5
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.|.||.||.-...+..+.-.++++++...
T Consensus 433 dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~ 465 (579)
T PLN03102 433 DGHVEIKDRSKDIIISGGENISSVEVENVLYKY 465 (579)
T ss_pred CCeEEEEeccCcEEEECCEEECHHHHHHHHHhC
Confidence 467999999999865555566677788877653
No 51
>PRK07470 acyl-CoA synthetase; Validated
Probab=31.05 E-value=38 Score=25.65 Aligned_cols=33 Identities=21% Similarity=0.047 Sum_probs=24.3
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.+.+.||.||.-...+..+.-.+++.+|.++
T Consensus 407 ~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~ 439 (528)
T PRK07470 407 RGFLYITGRASDMYISGGSNVYPREIEEKLLTH 439 (528)
T ss_pred CCeEEEeCCccceEEeCCEEECHHHHHHHHHhC
Confidence 467999999999755555566677777777654
No 52
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=30.75 E-value=47 Score=25.34 Aligned_cols=32 Identities=19% Similarity=0.080 Sum_probs=24.5
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.+.+.||+||.-...+..+.-.++++++..
T Consensus 427 ~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~ 458 (545)
T PRK07768 427 EGEVVVCGRVKDVIIMAGRNIYPTDIERAAAR 458 (545)
T ss_pred CCEEEEEccccceEEECCEecCHHHHHHHHHh
Confidence 46799999999986555556667788887766
No 53
>PRK07788 acyl-CoA synthetase; Validated
Probab=30.68 E-value=45 Score=25.53 Aligned_cols=33 Identities=18% Similarity=0.017 Sum_probs=24.5
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.+.||.||.-...+..+.-.+++++|.+.
T Consensus 440 ~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~ 472 (549)
T PRK07788 440 DGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGH 472 (549)
T ss_pred CCCEEEeccCcceEEECCEEECHHHHHHHHHhC
Confidence 467999999999865555566667777777653
No 54
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=30.63 E-value=44 Score=26.23 Aligned_cols=33 Identities=15% Similarity=0.081 Sum_probs=25.3
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
+|.|.+.||.||.-...+..+.-.+++++|...
T Consensus 488 dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~ 520 (625)
T TIGR02188 488 DGYIWITGRVDDVINVSGHRLGTAEIESALVSH 520 (625)
T ss_pred CCcEEEEecccCEEEeCCEEECHHHHHHHHHhC
Confidence 467999999999865556666777888887653
No 55
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=30.61 E-value=46 Score=26.22 Aligned_cols=33 Identities=15% Similarity=0.059 Sum_probs=25.0
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
+|.|.|.||.||.-...+..+.-.+++++|.+.
T Consensus 496 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 528 (637)
T PRK00174 496 DGYYWITGRVDDVLNVSGHRLGTAEIESALVAH 528 (637)
T ss_pred CCcEEEEEecccEEEeCCEEECHHHHHHHHHhC
Confidence 467999999999966556666677888877653
No 56
>PF13590 DUF4136: Domain of unknown function (DUF4136)
Probab=30.45 E-value=1.1e+02 Score=19.32 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=26.9
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCC
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPV 57 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v 57 (77)
..+++++|.....-..+. . ..+.++.+++++++.=|+
T Consensus 114 ~~~~vW~g~a~~~~~~~~-~-~~~~i~~~V~~i~~~fP~ 150 (151)
T PF13590_consen 114 TNKVVWRGTASGRLSDNA-D-REEAIPKAVNKIFEQFPP 150 (151)
T ss_pred CCCEEEEEEEEeccCCCc-C-HHHHHHHHHHHHHHhCCC
Confidence 457999999876643322 2 788899999999986443
No 57
>PLN02246 4-coumarate--CoA ligase
Probab=30.45 E-value=35 Score=26.01 Aligned_cols=33 Identities=6% Similarity=0.045 Sum_probs=24.6
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.+.||.||.-...+..+.-.+++.+|.+.
T Consensus 425 ~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~ 457 (537)
T PLN02246 425 DDELFIVDRLKELIKYKGFQVAPAELEALLISH 457 (537)
T ss_pred CCeEEEEecccceEEECCEEECcHHHHHHHHhC
Confidence 467999999999865555556667888877664
No 58
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=30.34 E-value=49 Score=26.14 Aligned_cols=33 Identities=15% Similarity=0.073 Sum_probs=25.8
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
+|.|.+.||.||.-...+..+.-.+++++|.+.
T Consensus 485 dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~~ 517 (628)
T TIGR02316 485 DGYTFILGRTDDVINVAGHRLGTREIEESVSSH 517 (628)
T ss_pred CCcEEEEEcCcceEEeCCEEeCHHHHHHHHHhC
Confidence 467999999999866666667778888888653
No 59
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=30.11 E-value=67 Score=26.32 Aligned_cols=38 Identities=16% Similarity=0.088 Sum_probs=28.3
Q ss_pred eecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 12 NSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 12 ~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
+.+|+| |-+.++||-||--...+.-....++++||.+.
T Consensus 404 ~~~Ded--Gy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~h 441 (528)
T COG0365 404 AERDED--GYFWLHGRSDDVIKVSGKRIGPLEIESVLLAH 441 (528)
T ss_pred eEEccC--CCEEEEeeccceEeccCeeccHHHHHHHHHhC
Confidence 344443 67999999999865555566788999988765
No 60
>PRK07529 AMP-binding domain protein; Validated
Probab=30.06 E-value=50 Score=26.23 Aligned_cols=33 Identities=12% Similarity=-0.062 Sum_probs=24.8
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.+.||.||.-...+..+.-.+++++|.+.
T Consensus 458 dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~~ 490 (632)
T PRK07529 458 DGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRH 490 (632)
T ss_pred CceEEEEecccCEEEeCCEEECHHHHHHHHHhC
Confidence 477999999999866555556667788777653
No 61
>PRK06164 acyl-CoA synthetase; Validated
Probab=29.95 E-value=53 Score=24.96 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=24.1
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.+.|.||+||.-...+..+.-.+++++|...
T Consensus 419 ~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~ 451 (540)
T PRK06164 419 DGQFVYQTRMGDSLRLGGFLVNPAEIEHALEAL 451 (540)
T ss_pred CceEEEEeecCCeEEECCEEcCHHHHHHHHHhC
Confidence 467899999999855555566677777777643
No 62
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=29.53 E-value=40 Score=25.99 Aligned_cols=33 Identities=3% Similarity=0.018 Sum_probs=25.3
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.+.||+||.-..++..+.-.+++++|.+.
T Consensus 413 dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~ 445 (542)
T PRK06155 413 DGWFRFVDRIKDAIRRRGENISSFEVEQVLLSH 445 (542)
T ss_pred CceEEEEecCCCEEEeCCEEECHHHHHHHHHhC
Confidence 467999999999865556666777888888664
No 63
>PRK13599 putative peroxiredoxin; Provisional
Probab=29.18 E-value=1.5e+02 Score=20.95 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=30.5
Q ss_pred cceeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeC
Q 034969 9 SGANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHP 73 (77)
Q Consensus 9 ~~~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~ 73 (77)
-.+|..|.+ ++|+|....... .. ....++.++|++|.. .....+-|...|.+
T Consensus 120 R~tfIID~d--G~Ir~~~~~p~~----~g-r~~~eilr~l~~lq~------~~~~~~~~p~~w~~ 171 (215)
T PRK13599 120 RAVFIVDDK--GTIRLIMYYPQE----VG-RNVDEILRALKALQT------ADQYGVALPEKWPN 171 (215)
T ss_pred eEEEEECCC--CEEEEEEEcCCC----CC-CCHHHHHHHHHHhhh------hhhcCCCcCCCCCC
Confidence 345666664 678888653222 11 245566677777633 22236778889976
No 64
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=29.06 E-value=46 Score=25.28 Aligned_cols=33 Identities=15% Similarity=0.011 Sum_probs=25.4
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.+.||.||.-...+..+.-.+++.+|.+.
T Consensus 337 dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~ 369 (452)
T PRK07445 337 QGYLHILGRNSQKIITGGENVYPAEVEAAILAT 369 (452)
T ss_pred CCCEEEEeecCCEEEECCEEECHHHHHHHHHhC
Confidence 466999999999865566667777888887764
No 65
>PRK08162 acyl-CoA synthetase; Validated
Probab=28.97 E-value=44 Score=25.44 Aligned_cols=32 Identities=6% Similarity=-0.073 Sum_probs=24.8
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.+.|.||.||.-..++..+.-.+++.+|..
T Consensus 429 dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~ 460 (545)
T PRK08162 429 DGYIKIKDRSKDIIISGGENISSIEVEDVLYR 460 (545)
T ss_pred CccEEEEecccceEEeCCEEECHHHHHHHHHh
Confidence 46799999999986666666777788887765
No 66
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=28.96 E-value=1.1e+02 Score=19.32 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=27.5
Q ss_pred eeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034969 11 ANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP 56 (77)
Q Consensus 11 ~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~ 56 (77)
.|....+.++.|.|. |+.. .-..-.+.++|.+|++....+..
T Consensus 37 ~f~l~~~~~~~l~Y~---Dedg-d~V~l~~D~DL~~a~~~~~~~~~ 78 (91)
T cd06398 37 LFSLSPDADLSLTYT---DEDG-DVVTLVDDNDLTDAIQYFCSGSR 78 (91)
T ss_pred HhCCCCCCcEEEEEE---CCCC-CEEEEccHHHHHHHHHHHhccCC
Confidence 455555447999998 6541 11234578999999998755443
No 67
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=28.91 E-value=63 Score=27.02 Aligned_cols=34 Identities=9% Similarity=-0.058 Sum_probs=27.4
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 52 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~all 52 (77)
++.|.+.||.||.-...+..+.-.+++++|.+..
T Consensus 1032 ~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~ 1065 (1146)
T PRK08633 1032 DGFLTITDRYSRFAKIGGEMVPLGAVEEELAKAL 1065 (1146)
T ss_pred CceEEEEecccchhhhCcEEECHHHHHHHHHhcc
Confidence 4779999999998666666677788999888765
No 68
>PF11713 Peptidase_C80: Peptidase C80 family; InterPro: IPR020974 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry identifies a domain that functions as a cysteine peptidase that belongs to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). This domain is found in bacterial toxins that self-process by a cysteine peptidase mechanism. These include Vibrio cholerae RTX toxin [], and Clostridium difficile toxins A and B []. Some pathogenic bacteria produce unrelated toxins that also require activation and processing, the processing often being autolytic as it is in anthrax lethal factor, tentoxilysin (the tetanus neurotoxin) and bontoxilysin (the botulinum neurotoxin), all of which are metallopeptidases.; PDB: 3GCD_C 3EEB_B 3FZY_A 3PEE_A 3PA8_B 3HO6_A.
Probab=28.85 E-value=70 Score=21.92 Aligned_cols=61 Identities=20% Similarity=0.323 Sum_probs=35.1
Q ss_pred cceeecCCCCCeEEEE----------------eeeccCCCCCCCCCCcHHHHHHHH----HHHHc--CCCCCCCCCCCcc
Q 034969 9 SGANSVDGRRPFQLVY----------------HGQFDDSRPSNNLPVTGRDIRLAI----ECVLS--GQPVSSNQKPSVG 66 (77)
Q Consensus 9 ~~~~~~~~~~~~~L~Y----------------~GrIDD~~~~~~~~vt~~yL~~AI----~alla--Gk~v~~~~T~siG 66 (77)
|.+++.|-+++.+++| ||+-..+.+.- .--+-..|.+.| ..+.. +-.+.+....-+|
T Consensus 32 SvviQlD~~g~~rvv~g~~~~l~g~~rw~lVGHG~~~~~~~~l-~g~~a~~La~~l~~~~~~l~~~~~~~~~P~~IsLvG 110 (157)
T PF11713_consen 32 SVVIQLDIDGEYRVVYGDPSKLQGKVRWQLVGHGRDEFNNQTL-AGYSADELANKLIKFKQQLKQKYGINISPKKISLVG 110 (157)
T ss_dssp EEEEECCCTCGEEEEEEEGGGC-SEEEEEEE--EESSTSSSEE-TTEEHHHHHHHHHHHHHHHHHHHTTT--ESEEEEES
T ss_pred cEEEEEcCCCCEEEEEeChHHcCCCceEEEEEeCCCcCCCcee-CCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEE
Confidence 5677777766666666 77752221111 234667888888 66653 3345666778889
Q ss_pred ceee
Q 034969 67 CSIK 70 (77)
Q Consensus 67 CsIK 70 (77)
|++-
T Consensus 111 C~l~ 114 (157)
T PF11713_consen 111 CSLA 114 (157)
T ss_dssp SS-S
T ss_pred eccc
Confidence 9863
No 69
>cd01216 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=28.51 E-value=95 Score=20.44 Aligned_cols=33 Identities=15% Similarity=0.048 Sum_probs=25.2
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP 56 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~ 56 (77)
.|.++|-|-+- -+++....-+.+||..|++.+.
T Consensus 3 ~F~VkyLG~~e-----V~~~~g~~vv~~ai~~L~~~~~ 35 (123)
T cd01216 3 VFAVRSLGWVE-----VAEEDGSEALNKAIDDLSSCSN 35 (123)
T ss_pred EEEEEeeeeEE-----ECCCCCHHHHHHHHHHHHhccc
Confidence 36789999862 3344578899999999997665
No 70
>PRK09274 peptide synthase; Provisional
Probab=28.26 E-value=45 Score=25.45 Aligned_cols=33 Identities=6% Similarity=-0.076 Sum_probs=24.2
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.+.||.||.-...+..+.-.+++.+|...
T Consensus 433 dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~ 465 (552)
T PRK09274 433 QGRLWFCGRKAHRVETAGGTLYTIPCERIFNTH 465 (552)
T ss_pred CCcEEEEeccCCeEEECCEEECcHHHHHHHHhC
Confidence 467999999999865555555666777777654
No 71
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus. The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....
Probab=28.14 E-value=21 Score=25.70 Aligned_cols=14 Identities=29% Similarity=0.570 Sum_probs=8.9
Q ss_pred CCCccceeeeeCCC
Q 034969 62 KPSVGCSIKWHPQT 75 (77)
Q Consensus 62 T~siGCsIKwk~~~ 75 (77)
..+.||.|+|+++.
T Consensus 148 ~~~~~t~I~Wk~gk 161 (244)
T PF00956_consen 148 LKSESTPIDWKPGK 161 (244)
T ss_dssp EEEEE---EBSTTT
T ss_pred ceeeeecccccCCC
Confidence 77899999999764
No 72
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=28.07 E-value=64 Score=24.54 Aligned_cols=33 Identities=12% Similarity=0.071 Sum_probs=24.1
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.+.||.||.-..++..+.-.+++++|.+.
T Consensus 421 ~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~ 453 (527)
T TIGR02275 421 EGYIVVVGRAKDQINRGGEKIAAEEIENLLLAH 453 (527)
T ss_pred CccEEEEecccceeecCCEEECHHHHHHHHHhC
Confidence 366999999999865555566677777777653
No 73
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=27.90 E-value=58 Score=25.19 Aligned_cols=33 Identities=12% Similarity=0.069 Sum_probs=24.2
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
+|.|.+.||+||.-..++..+.-.++++++...
T Consensus 427 dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~ 459 (563)
T PLN02860 427 AGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQH 459 (563)
T ss_pred CCCEEEeecccceeEECCEEccHHHHHHHHHhC
Confidence 467999999999866556566666777776543
No 74
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=27.59 E-value=47 Score=25.01 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=24.7
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.+.+.||+||.-..++..+.-.+++++|...
T Consensus 392 ~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~ 424 (509)
T PRK12406 392 DGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAV 424 (509)
T ss_pred CceEEEeecccceEEECCEEECHHHHHHHHHhC
Confidence 467999999999865555666777888887653
No 75
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=27.52 E-value=53 Score=24.93 Aligned_cols=33 Identities=3% Similarity=-0.082 Sum_probs=25.0
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.+.||.||.-...+..+.-.+++.+|..+
T Consensus 429 ~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~ 461 (546)
T PRK08314 429 EGYFFITDRLKRMINASGFKVWPAEVENLLYKH 461 (546)
T ss_pred CCcEEEEecchhhEEeCCEEECHHHHHHHHHhC
Confidence 367999999999865556666777888887654
No 76
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=27.38 E-value=68 Score=23.35 Aligned_cols=32 Identities=19% Similarity=0.020 Sum_probs=23.0
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.+.+.||.||.-...+..+.-.+++++|.+
T Consensus 333 dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 364 (436)
T TIGR01923 333 EGFLYVLGRRDDLIISGGENIYPEEIETVLYQ 364 (436)
T ss_pred CCCEEEeccccCeEEeCCEeeCHHHHHHHHHh
Confidence 36799999999986555555566677777654
No 77
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=27.38 E-value=47 Score=26.65 Aligned_cols=32 Identities=16% Similarity=-0.070 Sum_probs=25.5
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.|.+.||.||.-...+..+.-.+++++|..
T Consensus 505 dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~ 536 (647)
T PTZ00237 505 NGYYTIVSRSDDQIKISGNKVQLNTIETSILK 536 (647)
T ss_pred CCeEEEEeccCCEEEECCEEeCHHHHHHHHHh
Confidence 46799999999986666667778888888764
No 78
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=27.06 E-value=42 Score=24.89 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=24.4
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.+.+.||.||.-...+..+.-.++++++...
T Consensus 388 ~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 420 (503)
T PRK04813 388 DGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQS 420 (503)
T ss_pred CCeEEEeccccceEEECcEEeCHHHHHHHHHhC
Confidence 467999999999866566666677777777653
No 79
>TIGR03357 VI_zyme type VI secretion system lysozyme-related protein. The description for PFAM family pfam04965 cites acidic lysozyme activity for some phage-encoded members. This family represents a different subgroup of the proteins from pfam04965, where all members are associated with bacterial type VI secretion system genomic contexts.
Probab=26.61 E-value=1.5e+02 Score=19.11 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=24.5
Q ss_pred CCcHHHHHHHH----HHHHcCCCCCCCCCCCccce
Q 034969 38 PVTGRDIRLAI----ECVLSGQPVSSNQKPSVGCS 68 (77)
Q Consensus 38 ~vt~~yL~~AI----~allaGk~v~~~~T~siGCs 68 (77)
..+...|+++| +.||+.+.......+-+||.
T Consensus 20 ~~~~~~l~~sI~~~L~~LLnTr~g~~~~~~~yGl~ 54 (133)
T TIGR03357 20 RSSAEQLRESIRRHLERLLNTRRGSCASLPDYGLP 54 (133)
T ss_pred cCCHHHHHHHHHHHHHHHHccCCCccccccccCCc
Confidence 34555666655 79999999999999999994
No 80
>PRK05852 acyl-CoA synthetase; Validated
Probab=26.53 E-value=49 Score=25.21 Aligned_cols=33 Identities=6% Similarity=0.065 Sum_probs=23.3
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.+.||.||.-...+..+.-..+++++...
T Consensus 421 dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~ 453 (534)
T PRK05852 421 AGDLSIRGRIKELINRGGEKISPERVEGVLASH 453 (534)
T ss_pred CCcEEEEecchhhEEECCEEECHHHHHHHHHhC
Confidence 366999999999865455555666777777553
No 81
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=26.47 E-value=62 Score=24.35 Aligned_cols=32 Identities=6% Similarity=-0.079 Sum_probs=23.5
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.+.|.||.||.-...+..+.-.+++.++..
T Consensus 411 ~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~ 442 (517)
T PRK08008 411 EGFFYFVDRRCNMIKRGGENVSCVELENIIAT 442 (517)
T ss_pred CCcEEEeecccceEEeCCEEECHHHHHHHHHh
Confidence 46799999999986555555666777777755
No 82
>PRK05850 acyl-CoA synthetase; Validated
Probab=26.06 E-value=58 Score=25.08 Aligned_cols=33 Identities=18% Similarity=0.121 Sum_probs=27.2
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.+.||.||.-...+..+.-.+++.+|.+.
T Consensus 449 ~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~ 481 (578)
T PRK05850 449 EGELFIVGRIKDLLIVDGRNHYPDDIEATIQEI 481 (578)
T ss_pred CCEEEEEcccccEEEECCeecCHHHHHHHHHHh
Confidence 467999999999866666777888999998875
No 83
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=26.04 E-value=25 Score=26.03 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=13.7
Q ss_pred eecceeecCCCCCeEEEEeeec
Q 034969 7 LSSGANSVDGRRPFQLVYHGQF 28 (77)
Q Consensus 7 ~~~~~~~~~~~~~~~L~Y~GrI 28 (77)
++.+||++.| -.|||||
T Consensus 181 I~kVvFDRgG-----y~YHGRV 197 (211)
T PTZ00032 181 ISKVRFDRAH-----YKYAGKV 197 (211)
T ss_pred CCEEEEeCCC-----CeehhHH
Confidence 3678999777 6999997
No 84
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=25.92 E-value=78 Score=24.14 Aligned_cols=33 Identities=9% Similarity=0.014 Sum_probs=25.1
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.+.||.||.-..++..+.-.++++++.+.
T Consensus 423 ~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~ 455 (547)
T PRK06087 423 AGYIKITGRKKDIIVRGGENISSREVEDILLQH 455 (547)
T ss_pred CCCEEEEecchhhhhcCCEEECHHHHHHHHHhC
Confidence 356899999999865566667777888888653
No 85
>PRK06178 acyl-CoA synthetase; Validated
Probab=25.67 E-value=62 Score=24.87 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=24.7
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.|.+.||.||.-...+..+.-.++++++..
T Consensus 455 ~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~ 486 (567)
T PRK06178 455 QGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQ 486 (567)
T ss_pred CCeEEEEecccccEEECCEEECHHHHHHHHHh
Confidence 46799999999987666666667788888765
No 86
>PRK08308 acyl-CoA synthetase; Validated
Probab=25.41 E-value=61 Score=23.86 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=24.1
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.+.|.||.||.-...+..+.-.++++++..
T Consensus 304 dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~ 335 (414)
T PRK08308 304 RGTLHFMGRMDDVINVSGLNVYPIEVEDVMLR 335 (414)
T ss_pred CccEEEecccCCeEEECCEEECHHHHHHHHHh
Confidence 36799999999987656666667777777665
No 87
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=25.34 E-value=71 Score=25.80 Aligned_cols=32 Identities=6% Similarity=-0.196 Sum_probs=24.2
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.|.+.||.||.-...+..+.-.++++++..
T Consensus 604 dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~ 635 (718)
T PRK08043 604 QGFVQIQGRAKRFAKIAGEMVSLEMVEQLALG 635 (718)
T ss_pred CCcEEEEecCCCeeEeCcEEcCHHHHHHHHHh
Confidence 46799999999986656666677777777654
No 88
>PF09636 XkdW: XkdW protein; InterPro: IPR019094 This entry includes the phage SPbeta protein YorD, the function of which is not known, It also contains the protein XkdW (P54342 from SWISSPROT) from the Phage-like element PBSX in Bacillus subtilis. XkdW is approximately 100 residues long and contains two alpha helices and two beta strands, and is probably monomeric. XkdW is expressed in bacteria but is probably viral in origin. Its function is unknown. PBSX, a defective prophage of B. subtilis, is a chromosomally based element which encodes a non-infectious phage-like particle with bactericidal activity. PBSX is induced by agents which elicit the SOS response [].; PDB: 2HG7_A.
Probab=25.18 E-value=92 Score=20.78 Aligned_cols=24 Identities=13% Similarity=0.021 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHHHHcCCCCCCC
Q 034969 37 LPVTGRDIRLAIECVLSGQPVSSN 60 (77)
Q Consensus 37 ~~vt~~yL~~AI~allaGk~v~~~ 60 (77)
+..|..+|..|.+.+.+..+.+.+
T Consensus 41 p~Pt~~El~~a~ee~~~~p~~~~P 64 (108)
T PF09636_consen 41 PQPTEAELQSAWEELQKNPDYEPP 64 (108)
T ss_dssp ----HHHHHHHHHHHHHS------
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCc
Confidence 345999999999999999866664
No 89
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=24.76 E-value=68 Score=24.54 Aligned_cols=33 Identities=9% Similarity=-0.153 Sum_probs=25.0
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.+.+.||.||.-...+..+.-.+++.++.+.
T Consensus 423 ~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~ 455 (542)
T PRK06018 423 YGYMRITDRSKDVIKSGGEWISSIDLENLAVGH 455 (542)
T ss_pred CccEEEEecCCCeEEECCEEECHHHHHHHHHhC
Confidence 467899999999876666666777888777653
No 90
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=24.67 E-value=72 Score=24.44 Aligned_cols=32 Identities=9% Similarity=-0.058 Sum_probs=23.6
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.|.+.||.||.-...+..+.-.+++++|..
T Consensus 432 ~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~ 463 (547)
T PRK13295 432 DGYIRISGRSKDVIIRGGENIPVVEIEALLYR 463 (547)
T ss_pred CceEEEEeccCCeEEECCEEECHHHHHHHHHh
Confidence 46799999999986555555666677777654
No 91
>PRK13382 acyl-CoA synthetase; Provisional
Probab=24.66 E-value=67 Score=24.68 Aligned_cols=33 Identities=15% Similarity=0.039 Sum_probs=24.7
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.+.|.||.||.-...+..+.-.+++.+|...
T Consensus 429 ~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~ 461 (537)
T PRK13382 429 NGRLFVVGRDDEMIVSGGENVYPIEVEKTLATH 461 (537)
T ss_pred CCcEEEeccccceeEECCEEECHHHHHHHHHhC
Confidence 356999999999966555566667788877664
No 92
>PRK07867 acyl-CoA synthetase; Validated
Probab=24.11 E-value=60 Score=25.01 Aligned_cols=33 Identities=9% Similarity=-0.021 Sum_probs=24.3
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.+.+.||.||.-..++..+.-.++++++.+.
T Consensus 394 ~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~ 426 (529)
T PRK07867 394 DGYAYFAGRLGDWMRVDGENLGTAPIERILLRY 426 (529)
T ss_pred CCcEEEeccccCeEEECCEEeCHHHHHHHHHhC
Confidence 366999999999865555556667787777653
No 93
>PRK13189 peroxiredoxin; Provisional
Probab=23.96 E-value=1.9e+02 Score=20.55 Aligned_cols=53 Identities=9% Similarity=0.116 Sum_probs=30.7
Q ss_pred ceeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969 10 GANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 75 (77)
Q Consensus 10 ~~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~ 75 (77)
++|-.|.+ |+|++.= +.+... .....++..+|+++...+ ....-|...|++|+
T Consensus 128 ~tfIID~~--G~Ir~~~-~~~~~~----gr~~~eilr~l~alq~~~------~~~~~~p~~w~~g~ 180 (222)
T PRK13189 128 AVFIIDPK--GIIRAIL-YYPQEV----GRNMDEILRLVKALQTSD------EKGVATPANWPPND 180 (222)
T ss_pred EEEEECCC--CeEEEEE-ecCCCC----CCCHHHHHHHHHHhhhHh------hcCcCcCCCCCCCC
Confidence 35666664 5676663 222211 113557778888774422 22577899998875
No 94
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=23.95 E-value=83 Score=25.31 Aligned_cols=32 Identities=6% Similarity=-0.142 Sum_probs=24.1
Q ss_pred CeEEEEeeeccCCCC-CCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRP-SNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~-~~~~~vt~~yL~~AI~a 50 (77)
+|.|.+.||.||.-. ..++.+.-.++++++.+
T Consensus 506 dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~ 538 (660)
T PLN02861 506 NGAMKIIDRKKNIFKLSQGEYVAVENLENTYSR 538 (660)
T ss_pred CCcEEEEeccccceEcCCCeEEcHHHHHHHHhc
Confidence 467999999999965 35666777788777654
No 95
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=23.87 E-value=51 Score=23.64 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=23.0
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.+.+.||+||.-...+..+.-.+++++|..
T Consensus 368 ~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~ 399 (408)
T TIGR01733 368 DGNLEFLGRIDDQVKIRGYRIELGEIEAALLR 399 (408)
T ss_pred CCCEEEeeccCCEEEeCeEEechHHHHHHHhc
Confidence 35699999999986555555566677777754
No 96
>PF01871 AMMECR1: AMMECR1; InterPro: IPR002733 The contiguous gene deletion syndrome is characterised by Alport syndrome (A), mental retardation (M), midface hypoplasia (M), and elliptocytosis (E), as well as generalized hypoplasia and cardiac abnormalities. It is caused by a deletion in Xq22.3, comprising several genes including AMME chromosomal region gene 1 (AMMECR1), which encodes a protein with a nuclear location and presently unknown function. The C-terminal region of AMMECR1 (from residue 122 to 333) is well conserved, and homologues appear in species ranging from bacteria and archaea to eukaryotes. The high level of conservation of the AMMECR1 domain points to a basic cellular function, potentially in either the transcription, replication, repair or translation machinery [, ]. The AMMECR1 domain contains a 6-amino-acid motif (LRGCIG) that might be functionally important since it is strikingly conserved throughout evolution []. The AMMECR1 domain consists of two distinct subdomains of different sizes. The large subdomain, which contains both the N- and C-terminal regions, consists of five alpha-helices and five beta-strands. These five beta-strands form an antiparallel beta-sheet. The small subdomain consists of four alpha-helices and three beta-strands, and these beta-strands also form an antiparallel beta-sheet. The conserved 'LRGCIG' motif is located at beta(2) and its N-terminal loop, and most of the side chains of these residues point toward the interface of the two subdomains. The two subdomains are connected by only two loops, and the interaction between the two subdomains is not strong. Thus, these subdomains may move dynamically when the substrate enters the cleft. The size of the cleft suggests that the substrate is large, e.g., the substrate may be a nucleic acid or protein. However, the inner side of the cleft is not filled with positively charged residues, and therefore it is unlikely that negatively charged nucleic acids such as DNA or RNA interact at this site []. ; PDB: 1WSC_B 1VAJ_A 1ZQ7_D.
Probab=23.86 E-value=65 Score=22.41 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCCC-------CCCCCCCccceeeeeC
Q 034969 42 RDIRLAIECVLSGQPV-------SSNQKPSVGCSIKWHP 73 (77)
Q Consensus 42 ~yL~~AI~allaGk~v-------~~~~T~siGCsIKwk~ 73 (77)
.+.++||++-|.+++. +..-..+.||-+.|+.
T Consensus 3 ~~Ar~ai~~~l~~~~~~~~~~~~~~~l~~~~g~FVTl~~ 41 (171)
T PF01871_consen 3 RLAREAIESYLRGGPLPPPPPPLPPELSEPRGVFVTLKK 41 (171)
T ss_dssp HHHHHHHHHHHHHSSSCCCCCT--GGGGSBEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCChhhcCceeEEEEEEE
Confidence 4678999999999985 1223458899999964
No 97
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=23.69 E-value=73 Score=24.62 Aligned_cols=33 Identities=12% Similarity=0.081 Sum_probs=25.4
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.+.||.||.-...+..+.-.+++.+|.+.
T Consensus 445 ~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~ 477 (570)
T PRK04319 445 DGYFWFQGRVDDVIKTSGERVGPFEVESKLMEH 477 (570)
T ss_pred CeeEEEEecCCCEEEECCEEECHHHHHHHHhhC
Confidence 477999999999865556666777888888764
No 98
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=23.50 E-value=40 Score=25.06 Aligned_cols=51 Identities=22% Similarity=0.170 Sum_probs=35.5
Q ss_pred eeecCCCCCeEEEEeee-ccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccc
Q 034969 11 ANSVDGRRPFQLVYHGQ-FDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGC 67 (77)
Q Consensus 11 ~~~~~~~~~~~L~Y~Gr-IDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGC 67 (77)
.|..+|. ..|.|+|+ |||-..-.+ .+.--++|+++|.-+-+.+.--....|
T Consensus 138 ~~~i~g~--~vLgtsGqni~Di~ky~~----~~~~l~~me~~L~wrHlaPTaPDTL~~ 189 (257)
T cd07387 138 EFSIDGV--RVLGTSGQNVDDILKYSS----LESRLDILERTLKWRHIAPTAPDTLWC 189 (257)
T ss_pred EEEECCE--EEEEECCCCHHHHHHhCC----CCCHHHHHHHHHHhcccCCCCCCcccc
Confidence 5667775 89999999 888743221 223468999999888887765555555
No 99
>PLN02479 acetate-CoA ligase
Probab=23.48 E-value=73 Score=24.66 Aligned_cols=32 Identities=6% Similarity=-0.042 Sum_probs=24.0
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.+.|.||.||.-...+..+.-.+++.++..
T Consensus 443 ~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~ 474 (567)
T PLN02479 443 DGYIEIKDRSKDIIISGGENISSLEVENVVYT 474 (567)
T ss_pred CccEEEeccccceEEeCCEEEcHHHHHHHHHh
Confidence 35699999999986555556677788877764
No 100
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=23.46 E-value=78 Score=24.87 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=25.2
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
+|.|.+.||+||.-...+..+.-.++++++..
T Consensus 488 dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~ 519 (612)
T PRK12476 488 DGELYITGRIADLIVIDGRNHYPQDIEATVAE 519 (612)
T ss_pred CCEEEEEeccCcEEEECCcccCHHHHHHHHHH
Confidence 46799999999997666677777888887753
No 101
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=23.39 E-value=75 Score=23.81 Aligned_cols=32 Identities=13% Similarity=0.007 Sum_probs=24.5
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.+.+.||.||.-..++..+.-.+++.+|..
T Consensus 382 ~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~ 413 (502)
T PRK08276 382 DGYLYLTDRKSDMIISGGVNIYPQEIENLLVT 413 (502)
T ss_pred CcCEEEeccCcceEEeCCEEeCHHHHHHHHHh
Confidence 35699999999986666666777788888864
No 102
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=23.35 E-value=63 Score=24.74 Aligned_cols=33 Identities=3% Similarity=0.005 Sum_probs=24.6
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.+.+.||.||.-...+..+.-.+++.+|.+.
T Consensus 430 dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 462 (546)
T PLN02330 430 DGDIFIVDRIKELIKYKGFQVAPAELEAILLTH 462 (546)
T ss_pred CCcEEEEechHHhhhcCCEEECHHHHHHHHHhC
Confidence 356999999999865556666777888877653
No 103
>PLN02614 long-chain acyl-CoA synthetase
Probab=23.03 E-value=90 Score=25.25 Aligned_cols=32 Identities=9% Similarity=-0.158 Sum_probs=24.5
Q ss_pred CeEEEEeeeccCCCC-CCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRP-SNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~-~~~~~vt~~yL~~AI~a 50 (77)
+|.|.+.||.||.-. ..+..+.-.++++++.+
T Consensus 509 dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~ 541 (666)
T PLN02614 509 NGSMKIIDRKKNIFKLSQGEYVAVENIENIYGE 541 (666)
T ss_pred CCCEEEEEcchhceecCCCeeecHHHHHHHHhc
Confidence 467999999999965 35677777788877754
No 104
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=22.74 E-value=87 Score=23.98 Aligned_cols=32 Identities=6% Similarity=-0.102 Sum_probs=23.4
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.+.+.||.||.-...+..+.-.+++.++.+
T Consensus 412 ~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~ 443 (542)
T PRK07786 412 EGYVWVVDRKKDMIISGGENIYCAEVENVLAS 443 (542)
T ss_pred CceEEEEecccceEEeCCEEECHHHHHHHHHh
Confidence 46789999999986555555666777777765
No 105
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=22.74 E-value=58 Score=27.84 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=24.9
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.|.|.||.||.-...+..+.-.+++.+|..
T Consensus 850 ~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~ 881 (1296)
T PRK10252 850 DGAVEYLGRSDDQLKIRGQRIELGEIDRAMQA 881 (1296)
T ss_pred CCcEEEecccCCeEEEeeEEecHHHHHHHHHh
Confidence 46799999999996666666667788888765
No 106
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=22.70 E-value=1.1e+02 Score=22.96 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=26.3
Q ss_pred CCcHHHHHHHHHHHHcCCCCCCCCCCCccceeee
Q 034969 38 PVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 71 (77)
Q Consensus 38 ~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKw 71 (77)
+.+...+++.|+++..-|. +.|..|+-||..|-
T Consensus 169 ~~~~~~i~~~~~~~~~~R~-~qP~~psaGS~FKN 201 (273)
T PRK14651 169 PSTPEAVLAKMALVDAARK-GQPKKKSAGCAFKN 201 (273)
T ss_pred CCCHHHHHHHHHHHHHHhc-CCccCCCCcceEeC
Confidence 3356789999999988888 55577999998873
No 107
>PF07660 STN: Secretin and TonB N terminus short domain; InterPro: IPR011662 This is a conserved region found at the N-terminal region of bacterial proteins involved in either protein secretion or the uptake of selective substrates, including: Bundle-forming pilus protein B, an outer-membrane protein absolutely required for pilus biogenesis, and for enteropathogenic Escherichia coli localized adherence and autoaggregation []. PilQ, which is required for type IV pilus biogenesis and competence and is thought to function both as a pore for exit of the pilus and as a channel for entry of haem and antimicrobial agents and uptake of transforming DNA []. PupB, a specific receptor for the siderophores ferric pseudobactin BN8 and ferric pseudobactin BN7, iron chelating molecules that allow the organism to extract iron from the environment, especially under iron-restricted conditions []. TonB, which couples the electrochemical potential of the cytoplasmic membrane to the active transport of iron-siderophores and vitamin B12 across the outer membrane []. ; GO: 0019867 outer membrane; PDB: 2D1U_A 1ZZV_A 2W75_B 2O5P_A 2W77_A 2W16_A 2W6U_B 2W6T_A 2W76_B 2W78_B ....
Probab=22.56 E-value=36 Score=18.29 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=15.4
Q ss_pred CcHHHHHHHHHHHHcCCCCCC
Q 034969 39 VTGRDIRLAIECVLSGQPVSS 59 (77)
Q Consensus 39 vt~~yL~~AI~allaGk~v~~ 59 (77)
+....+++|++.+|+|.....
T Consensus 20 ~~~~~~~~~L~~ll~~t~l~y 40 (52)
T PF07660_consen 20 VKNMSLEEALDQLLKGTGLTY 40 (52)
T ss_dssp -EEE-HHHHHHHHTTTSTEEE
T ss_pred cCCcCHHHHHHHHHccCCcEE
Confidence 356689999999999976543
No 108
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=22.53 E-value=75 Score=23.64 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCCCCC
Q 034969 42 RDIRLAIECVLSGQPVSS 59 (77)
Q Consensus 42 ~yL~~AI~allaGk~v~~ 59 (77)
..+++||++|.+|++|-+
T Consensus 19 ~~i~~ai~al~~Gk~Viv 36 (230)
T PRK00014 19 TRLERALQHLRIGRPVIL 36 (230)
T ss_pred hhHHHHHHHHHCCCeEEE
Confidence 469999999999999754
No 109
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=22.52 E-value=71 Score=24.62 Aligned_cols=33 Identities=6% Similarity=-0.032 Sum_probs=25.0
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.+.||+||.-...+..+.-.++++++..+
T Consensus 446 ~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~ 478 (562)
T PRK05677 446 DGYMRIVDRKKDMILVSGFNVYPNELEDVLAAL 478 (562)
T ss_pred CCcEEEEecCcCeEEeCCEEECHHHHHHHHHhC
Confidence 467999999999855555666777888888654
No 110
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=22.52 E-value=93 Score=23.93 Aligned_cols=33 Identities=3% Similarity=-0.071 Sum_probs=25.4
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.+.||.||.-...+..+.-.++++++...
T Consensus 458 ~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~ 490 (573)
T PRK05605 458 DGFIRIVDRIKELIITGGFNVYPAEVEEVLREH 490 (573)
T ss_pred CCcEEEEeccccceeeCCEEECHHHHHHHHHhC
Confidence 467999999999976666667777888877653
No 111
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=22.41 E-value=63 Score=20.07 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=21.6
Q ss_pred eeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCC
Q 034969 25 HGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSN 60 (77)
Q Consensus 25 ~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~ 60 (77)
.|||||... -..+|+..|..|+.-..|+-.
T Consensus 40 I~RiDDM~~------riDDLEKnIaDLm~qagvE~~ 69 (73)
T KOG4117|consen 40 IGRIDDMSS------RIDDLEKNIADLMTQAGVEEL 69 (73)
T ss_pred HHHHhhhhh------hhHHHHHHHHHHHHHccccCC
Confidence 478998842 356899999999876665543
No 112
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=22.40 E-value=84 Score=23.30 Aligned_cols=32 Identities=16% Similarity=0.024 Sum_probs=21.4
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.+.+.||+||.-..++..+.-.++++++.+
T Consensus 408 ~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~ 439 (521)
T PRK06187 408 DGYLYITDRIKDVIISGGENIYPRELEDALYG 439 (521)
T ss_pred CCCEEEeecccceEEcCCeEECHHHHHHHHHh
Confidence 45688999999986555544555566665544
No 113
>PRK08316 acyl-CoA synthetase; Validated
Probab=21.99 E-value=68 Score=23.92 Aligned_cols=33 Identities=12% Similarity=0.028 Sum_probs=24.3
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.+.||.||.-...+..+.-.+++++|.++
T Consensus 408 ~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~ 440 (523)
T PRK08316 408 EGYITVVDRKKDMIKTGGENVASREVEEALYTH 440 (523)
T ss_pred CceEEEecccccEEEeCCeEECHHHHHHHHHhC
Confidence 467999999999865555556667777777653
No 114
>PRK07868 acyl-CoA synthetase; Validated
Probab=21.99 E-value=76 Score=27.23 Aligned_cols=32 Identities=9% Similarity=-0.091 Sum_probs=23.2
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
+|.|.|.||.||.-......+.-.+++++|.+
T Consensus 849 dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~ 880 (994)
T PRK07868 849 DGDYWLVDRRGSVIRTARGPVYTEPVTDALGR 880 (994)
T ss_pred CCCEEEeccCCCEEEeCCceEcHHHHHHHHhc
Confidence 46799999999986544445666677777754
No 115
>TIGR00296 uncharacterized protein, PH0010 family. Members of this functionally uncharacterized protein family have been crystallized from Pyrococcus Horikoshii, Methanosarcina Mazei, and Sulfolobus Tokodaii.
Probab=21.86 E-value=1.8e+02 Score=20.84 Aligned_cols=32 Identities=28% Similarity=0.248 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCCC-C-CCC-----CCCccceeeee
Q 034969 41 GRDIRLAIECVLSGQPV-S-SNQ-----KPSVGCSIKWH 72 (77)
Q Consensus 41 ~~yL~~AI~allaGk~v-~-~~~-----T~siGCsIKwk 72 (77)
-.+.++||++-+.++++ + ++. ..+.||-+.|+
T Consensus 13 ~~lAr~ai~~~l~~~~~~~~~~~~p~~l~~~~g~FVTl~ 51 (200)
T TIGR00296 13 VRYARYAIESHLNGGKSSRLYPDLPIVFNEKRGVFITLK 51 (200)
T ss_pred HHHHHHHHHHHHccCCCCCCCccCChhhCCcccEEEEEE
Confidence 34678999988776542 1 112 45899999996
No 116
>PRK05857 acyl-CoA synthetase; Validated
Probab=21.53 E-value=1e+02 Score=23.73 Aligned_cols=32 Identities=6% Similarity=0.016 Sum_probs=23.2
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.|.+.||.||.-...+..+.-.+++.++..
T Consensus 415 ~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~ 446 (540)
T PRK05857 415 DGFFYIKGRSSEMIICGGVNIAPDEVDRIAEG 446 (540)
T ss_pred CceEEEeccccccEecCCEEECHHHHHHHHHh
Confidence 36799999999986655555666677776654
No 117
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=21.49 E-value=1.8e+02 Score=18.28 Aligned_cols=32 Identities=9% Similarity=0.208 Sum_probs=21.9
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 54 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaG 54 (77)
..+|.|+=. ..... .+.+.++|+.|+..+-.|
T Consensus 40 ~i~LsYkde---~s~~~-v~l~d~dle~aws~~~~~ 71 (80)
T cd06406 40 HITLSYKSE---ASGED-VILSDTNMEDVWSQAKDG 71 (80)
T ss_pred hcEEEeccC---CCCCc-cCcChHHHHHHHHhhcCC
Confidence 578999844 21122 234899999999987665
No 118
>PRK05614 gltA type II citrate synthase; Reviewed
Probab=21.37 E-value=71 Score=25.40 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=18.5
Q ss_pred EeecceeecCCCCCeEEEEeee-ccCC
Q 034969 6 ILSSGANSVDGRRPFQLVYHGQ-FDDS 31 (77)
Q Consensus 6 ~~~~~~~~~~~~~~~~L~Y~Gr-IDD~ 31 (77)
+.-|.+-..|++ +|+|+|||. |+|-
T Consensus 54 ~~~S~Is~iDg~-~G~L~YRGy~i~dL 79 (419)
T PRK05614 54 SCESKITYIDGD-KGILLYRGYPIEQL 79 (419)
T ss_pred eeeeeceeEeCC-CCEEEECCccHHHH
Confidence 345666667877 899999998 6554
No 119
>PRK06188 acyl-CoA synthetase; Validated
Probab=21.31 E-value=1.1e+02 Score=23.21 Aligned_cols=32 Identities=9% Similarity=-0.045 Sum_probs=21.9
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.+.+.||+|+.-...+..+.-..++.++..
T Consensus 406 ~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~ 437 (524)
T PRK06188 406 DGFYYIVDRKKDMIVTGGFNVFPREVEDVLAE 437 (524)
T ss_pred CccEEEEeccccceecCCEEECHHHHHHHHHh
Confidence 36699999999986555555556666666544
No 120
>PLN02654 acetate-CoA ligase
Probab=21.20 E-value=86 Score=25.25 Aligned_cols=33 Identities=12% Similarity=0.064 Sum_probs=26.6
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
+|.|.+.||.||.-...+..+...+++.++.+.
T Consensus 526 dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~ 558 (666)
T PLN02654 526 DGYYWLTGRVDDVINVSGHRIGTAEVESALVSH 558 (666)
T ss_pred CCcEEEeeeccCeEEeCCEEECHHHHHHHHHhC
Confidence 467999999999976666777888888888753
No 121
>PLN02574 4-coumarate--CoA ligase-like
Probab=21.06 E-value=83 Score=24.30 Aligned_cols=32 Identities=6% Similarity=0.046 Sum_probs=24.5
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.|.+.||.||.-...+..+.-.+++.+|.+
T Consensus 443 ~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~ 474 (560)
T PLN02574 443 DGYLYIVDRLKEIIKYKGFQIAPADLEAVLIS 474 (560)
T ss_pred CCeEEEEecchhheEECCEEECHHHHHHHHHh
Confidence 46799999999997656666667788777765
No 122
>PF06296 DUF1044: Protein of unknown function (DUF1044); InterPro: IPR009387 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.78 E-value=1.8e+02 Score=19.38 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=22.9
Q ss_pred CCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeee
Q 034969 38 PVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWH 72 (77)
Q Consensus 38 ~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk 72 (77)
..+..+|..|++++.+|. +..+. -|+-+|++
T Consensus 17 ~~sd~~L~~ai~el~~G~-~~adL---GGgv~K~R 47 (120)
T PF06296_consen 17 GLSDDDLCEAIEELEQGL-IDADL---GGGVRKKR 47 (120)
T ss_pred CCCHHHHHHHHHHHHhCC-cccch---hccEEEEE
Confidence 357889999999999994 44333 36778875
No 123
>PRK15000 peroxidase; Provisional
Probab=20.67 E-value=2.2e+02 Score=19.81 Aligned_cols=53 Identities=9% Similarity=0.102 Sum_probs=28.6
Q ss_pred ceeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969 10 GANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 75 (77)
Q Consensus 10 ~~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~ 75 (77)
+.|..|.+ |+|+|.-. .+.+. .-...++-.+++++...+ ..-.-|...|++++
T Consensus 127 ~tfiID~~--G~I~~~~~-~~~~~----gr~~~eilr~l~al~~~~------~~~~~~p~~w~~g~ 179 (200)
T PRK15000 127 GSFLIDAN--GIVRHQVV-NDLPL----GRNIDEMLRMVDALQFHE------EHGDVCPAQWEKGK 179 (200)
T ss_pred EEEEECCC--CEEEEEEe-cCCCC----CCCHHHHHHHHHHhhhHH------hcCCCcCCCCCCCC
Confidence 44555553 56777533 22211 113556666666654422 11467999998765
No 124
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=20.64 E-value=98 Score=23.72 Aligned_cols=33 Identities=9% Similarity=-0.009 Sum_probs=24.4
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.+.||.||.-...+..+.-.+++.+|...
T Consensus 422 ~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~ 454 (536)
T PRK10946 422 DGYITVVGREKDQINRGGEKIAAEEIENLLLRH 454 (536)
T ss_pred CCcEEEeccccceeecCCEEEcHHHHHHHHHhC
Confidence 467999999999865555556667787777653
No 125
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=20.53 E-value=2.5e+02 Score=20.87 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=30.8
Q ss_pred ceeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969 10 GANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 75 (77)
Q Consensus 10 ~~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~ 75 (77)
++|..|.+ |+|+|.=.-|.. . .-...++-++|+++..-+ ..-.-|...|++++
T Consensus 190 ~tFIID~d--G~I~~~~~~~~~-~----gr~v~eiLr~l~alq~~~------~~g~~cPanW~~g~ 242 (261)
T PTZ00137 190 ASVLVDKA--GVVKHVAVYDLG-L----GRSVDETLRLFDAVQFAE------KTGNVCPVNWKQGD 242 (261)
T ss_pred EEEEECCC--CEEEEEEEeCCC-C----CCCHHHHHHHHHHhchhh------hcCCCcCCCCCcCC
Confidence 44556653 678887553322 1 124556667777665422 22567888998764
No 126
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=20.25 E-value=65 Score=23.10 Aligned_cols=16 Identities=44% Similarity=0.609 Sum_probs=12.5
Q ss_pred HHHHHHHHHcCCCCCC
Q 034969 44 IRLAIECVLSGQPVSS 59 (77)
Q Consensus 44 L~~AI~allaGk~v~~ 59 (77)
+++||++|.+|++|-.
T Consensus 1 ie~ai~al~~G~~Viv 16 (194)
T PF00926_consen 1 IEEAIEALKAGKPVIV 16 (194)
T ss_dssp HHHHHHHHHTTS-EEE
T ss_pred CHHHHHHHHCCCeEEE
Confidence 4789999999998744
No 127
>PF02873 MurB_C: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; InterPro: IPR011601 This entry represents a C-terminal conserved region of UDP-N-acetylenolpyruvoylglucosamine reductase 1.1.1.158 from EC, which is also called UDP-N-acetylmuramate dehydrogenase. It is a part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide, which is a precursor of bacterial peptidoglycan. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 1MBB_A 2Q85_A 2MBR_A 1UXY_A 1MBT_A 1HSK_A 2GQU_A 2GQT_A 3I99_A 3TX1_A.
Probab=20.14 E-value=42 Score=21.70 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCC-CCCCCCCCCccceeee
Q 034969 42 RDIRLAIECVLSGQ-PVSSNQKPSVGCSIKW 71 (77)
Q Consensus 42 ~yL~~AI~allaGk-~v~~~~T~siGCsIKw 71 (77)
..++++|.+++.-+ ...+...|+-||..|.
T Consensus 2 e~I~~~~~~~~~~R~~~qP~~~~saGS~FkN 32 (105)
T PF02873_consen 2 EEIREAMQEIRRKRKLKQPLELPSAGSVFKN 32 (105)
T ss_dssp HHHHHHHHHHHHHHHCHSTTTSCEEEESB--
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCcceeeeC
Confidence 46788999999887 6667789999999885
Done!