Query 034969
Match_columns 77
No_of_seqs 118 out of 514
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 13:16:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5r_E Uncharacterized protein 99.4 1.6E-13 5.6E-18 93.8 6.4 55 20-74 154-208 (218)
2 2ywi_A Hypothetical conserved 99.2 3E-11 1E-15 79.3 6.4 55 20-74 141-195 (196)
3 2cvb_A Probable thiol-disulfid 99.1 5E-11 1.7E-15 78.2 5.1 55 20-75 127-181 (188)
4 1n8j_A AHPC, alkyl hydroperoxi 96.6 0.002 7E-08 42.4 3.7 31 40-75 143-173 (186)
5 1zye_A Thioredoxin-dependent p 96.5 0.0041 1.4E-07 42.2 5.1 45 20-75 157-201 (220)
6 2i81_A 2-Cys peroxiredoxin; st 96.5 0.0013 4.5E-08 44.6 2.4 52 11-75 145-196 (213)
7 2pn8_A Peroxiredoxin-4; thiore 96.0 0.0039 1.3E-07 42.1 2.7 53 10-75 141-193 (211)
8 1qmv_A Human thioredoxin perox 95.9 0.0044 1.5E-07 40.7 2.7 30 40-75 150-179 (197)
9 3ztl_A Thioredoxin peroxidase; 95.4 0.0075 2.6E-07 40.8 2.4 29 41-75 186-214 (222)
10 2h01_A 2-Cys peroxiredoxin; th 95.3 0.007 2.4E-07 39.5 1.9 45 20-75 131-175 (192)
11 2c0d_A Thioredoxin peroxidase 94.7 0.022 7.4E-07 39.0 3.0 52 11-75 149-200 (221)
12 3qpm_A Peroxiredoxin; oxidored 94.4 0.0035 1.2E-07 43.5 -1.5 52 11-75 171-222 (240)
13 3tjj_A Peroxiredoxin-4; thiore 94.2 0.024 8.1E-07 39.9 2.4 53 10-75 184-236 (254)
14 1uul_A Tryparedoxin peroxidase 94.1 0.032 1.1E-06 36.7 2.7 30 40-75 152-181 (202)
15 1we0_A Alkyl hydroperoxide red 93.1 0.086 2.9E-06 33.9 3.5 31 40-75 144-174 (187)
16 2v2g_A Peroxiredoxin 6; oxidor 89.6 0.25 8.7E-06 34.2 3.1 54 9-75 128-181 (233)
17 2bmx_A Alkyl hydroperoxidase C 87.4 1.2 4.1E-05 28.7 5.0 26 40-75 157-182 (195)
18 1prx_A HORF6; peroxiredoxin, h 82.2 0.73 2.5E-05 31.3 2.2 53 10-75 133-185 (224)
19 1xcc_A 1-Cys peroxiredoxin; un 78.9 1.5 5E-05 29.7 2.8 54 9-75 129-182 (220)
20 1zof_A Alkyl hydroperoxide-red 74.8 2.9 0.0001 26.8 3.3 29 40-74 148-176 (198)
21 3a2v_A Probable peroxiredoxin; 74.3 1.4 4.8E-05 30.9 1.8 50 10-73 126-175 (249)
22 1q2j_A MU-conotoxin SMIIIA; HE 60.2 2.3 8E-05 21.0 0.4 15 63-77 6-20 (26)
23 2d1s_A Luciferase, luciferin 4 56.2 13 0.00043 27.7 4.0 32 19-50 431-462 (548)
24 3tue_A Tryparedoxin peroxidase 52.5 13 0.00045 25.8 3.3 54 9-75 148-201 (219)
25 3l8c_A D-alanine--poly(phospho 51.7 14 0.00049 26.9 3.6 32 19-50 393-424 (521)
26 1ry2_A Acetyl-coenzyme A synth 51.3 17 0.00059 27.9 4.2 32 19-50 516-547 (663)
27 2ia7_A Tail lysozyme, putative 49.9 18 0.0006 22.6 3.4 31 39-69 29-59 (134)
28 2v7b_A Benzoate-coenzyme A lig 49.8 17 0.00059 26.5 3.8 32 19-50 419-450 (529)
29 4gs5_A Acyl-COA synthetase (AM 49.3 8.4 0.00029 27.3 2.0 32 22-53 243-274 (358)
30 3g7s_A Long-chain-fatty-acid-- 48.7 12 0.00041 27.7 2.8 32 19-50 429-460 (549)
31 3o83_A Peptide arylation enzym 48.4 8.6 0.0003 28.5 2.0 32 19-50 429-460 (544)
32 3ite_A SIDN siderophore synthe 48.2 8.6 0.0003 28.4 2.0 33 19-51 417-449 (562)
33 1mdb_A 2,3-dihydroxybenzoate-A 47.5 12 0.00043 27.6 2.7 32 19-50 420-451 (539)
34 1za8_A VHL-1; circular protein 47.1 4.4 0.00015 20.8 0.1 12 61-72 12-23 (31)
35 3ipl_A 2-succinylbenzoate--COA 46.3 11 0.00037 27.4 2.2 32 19-50 388-419 (501)
36 1pg4_A Acetyl-COA synthetase; 45.0 9.1 0.00031 29.3 1.7 33 19-51 507-539 (652)
37 1t5h_X 4-chlorobenzoyl COA lig 44.5 9.8 0.00034 27.8 1.8 32 19-50 392-423 (504)
38 3sbc_A Peroxiredoxin TSA1; alp 44.1 40 0.0014 23.2 4.8 55 8-75 143-197 (216)
39 3ni2_A 4-coumarate:COA ligase; 43.9 10 0.00034 28.0 1.7 32 19-50 424-455 (536)
40 3rg2_A Enterobactin synthase c 42.9 6.7 0.00023 29.6 0.7 32 19-50 424-455 (617)
41 4gr5_A Non-ribosomal peptide s 42.4 11 0.00038 28.1 1.8 32 19-50 459-490 (570)
42 4g2e_A Peroxiredoxin; redox pr 41.2 60 0.0021 19.9 5.1 36 10-51 121-156 (157)
43 4dg8_A PA1221; ANL superfamily 41.1 8.7 0.0003 29.4 1.0 32 19-50 409-440 (620)
44 3rix_A Luciferase, luciferin 4 41.0 11 0.00037 28.0 1.5 32 19-50 429-460 (550)
45 3fce_A D-alanine--poly(phospho 41.0 11 0.00039 27.4 1.6 33 19-51 389-421 (512)
46 3c5e_A Acyl-coenzyme A synthet 39.5 12 0.00041 28.1 1.6 32 19-50 446-477 (570)
47 4fuq_A Malonyl COA synthetase; 38.4 9.2 0.00031 28.0 0.8 32 19-50 389-420 (503)
48 2e50_A Protein SET; histone ch 38.2 6.8 0.00023 27.4 0.0 13 63-75 152-164 (225)
49 3gqw_A Fatty acid AMP ligase; 37.6 9.3 0.00032 28.0 0.7 32 20-51 452-483 (576)
50 4b2g_A GH3-1 auxin conjugating 36.3 46 0.0016 26.6 4.5 34 19-52 427-460 (609)
51 2cob_A LCOR protein; MLR2, KIA 36.1 26 0.00088 20.8 2.4 18 38-55 13-30 (70)
52 3r44_A Fatty acyl COA syntheta 35.7 15 0.00052 26.9 1.6 32 19-50 403-434 (517)
53 3etc_A AMP-binding protein; ad 35.1 18 0.00061 27.3 1.9 32 19-50 465-496 (580)
54 3e7w_A D-alanine--poly(phospho 34.7 14 0.00047 27.0 1.2 33 19-51 388-420 (511)
55 3dwv_A Glutathione peroxidase- 34.3 35 0.0012 21.5 3.0 18 40-57 170-187 (187)
56 2ayu_A Nucleosome assembly pro 34.0 7.9 0.00027 29.7 -0.2 13 63-75 268-281 (417)
57 1amu_A GRSA, gramicidin synthe 32.9 15 0.00051 27.5 1.2 32 19-50 420-451 (563)
58 3fs3_A Nucleosome assembly pro 32.9 8.8 0.0003 29.1 -0.1 13 63-75 194-206 (359)
59 4epl_A Jasmonic acid-amido syn 32.5 53 0.0018 26.0 4.3 35 19-53 422-456 (581)
60 3tsy_A Fusion protein 4-coumar 32.2 23 0.00077 28.4 2.2 32 19-50 471-502 (979)
61 3keb_A Probable thiol peroxida 31.5 81 0.0028 21.6 4.7 39 10-54 139-177 (224)
62 2zd7_A VPS75, vacuolar protein 30.6 8.8 0.0003 27.4 -0.4 13 62-74 139-151 (264)
63 3i99_A UDP-N-acetylenolpyruvoy 30.3 26 0.00088 26.0 2.1 33 39-71 214-246 (357)
64 1xzo_A BSSCO, hypothetical pro 28.5 95 0.0032 18.5 4.2 16 40-55 159-174 (174)
65 2vsq_A Surfactin synthetase su 28.1 22 0.00077 29.6 1.5 33 19-51 851-883 (1304)
66 1zq7_A Hypothetical protein MM 28.1 50 0.0017 22.9 3.2 33 41-73 11-53 (207)
67 1v25_A Long-chain-fatty-acid-C 27.8 11 0.00037 27.9 -0.3 32 19-50 425-456 (541)
68 1i9w_A Fusion protein E1; enve 27.1 28 0.00097 26.7 1.8 27 47-73 239-265 (390)
69 3j0f_E E1 envelope glycoprotei 26.5 29 0.001 27.0 1.8 27 47-73 239-265 (439)
70 3eyt_A Uncharacterized protein 26.4 1E+02 0.0035 18.0 4.9 18 40-57 139-156 (158)
71 2rdm_A Response regulator rece 26.3 52 0.0018 18.4 2.6 26 37-62 106-131 (132)
72 3ivr_A Putative long-chain-fat 26.0 33 0.0011 24.9 2.0 32 19-50 388-421 (509)
73 4eql_A 4-substituted benzoates 25.7 44 0.0015 26.4 2.7 34 19-52 415-448 (581)
74 3nyq_A Malonyl-COA ligase; A/B 25.0 34 0.0012 25.0 1.9 32 19-50 395-427 (505)
75 2yew_B E1 envelope glycoprotei 24.4 25 0.00086 27.3 1.1 27 47-73 234-260 (427)
76 2hg7_A Phage-like element PBSX 24.4 1.2E+02 0.0042 19.2 4.2 24 37-60 39-62 (110)
77 2f9s_A Thiol-disulfide oxidore 24.2 1.1E+02 0.0036 17.9 3.8 22 40-61 125-146 (151)
78 2dyq_A Amyloid beta A4 precurs 24.1 1.1E+02 0.0036 20.1 4.0 35 19-58 17-51 (144)
79 3lua_A Response regulator rece 24.0 40 0.0014 19.4 1.8 27 38-64 111-137 (140)
80 1vaj_A Hypothetical protein PH 23.7 71 0.0024 22.2 3.3 32 41-72 14-52 (214)
81 3fkf_A Thiol-disulfide oxidore 22.8 82 0.0028 18.0 3.0 15 40-54 133-147 (148)
82 3raz_A Thioredoxin-related pro 22.4 1.3E+02 0.0043 17.6 4.0 20 40-59 127-146 (151)
83 3ha9_A Uncharacterized thiored 22.3 1.2E+02 0.004 18.0 3.8 15 40-54 151-165 (165)
84 1wji_A Tudor domain containing 22.2 29 0.001 19.6 0.9 28 40-67 33-60 (63)
85 3lor_A Thiol-disulfide isomera 21.6 1.3E+02 0.0045 17.5 4.7 17 40-56 142-158 (160)
86 3kyp_A Pfnaps, nucleosome asse 20.6 27 0.00091 23.7 0.5 12 64-75 124-135 (193)
87 3t6k_A Response regulator rece 20.4 71 0.0024 18.4 2.4 27 37-63 107-133 (136)
88 2v1m_A Glutathione peroxidase; 20.4 79 0.0027 18.7 2.6 14 42-55 156-169 (169)
No 1
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=99.44 E-value=1.6e-13 Score=93.83 Aligned_cols=55 Identities=55% Similarity=1.005 Sum_probs=49.5
Q ss_pred eEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCC
Q 034969 20 FQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ 74 (77)
Q Consensus 20 ~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~ 74 (77)
|+++|+|++|++++......+..+|+++|+++++|++++.++|+++||+|+|+++
T Consensus 154 G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~GC~i~w~~~ 208 (218)
T 3u5r_E 154 RRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKDVGTTQVPSIGCNIKWTAG 208 (218)
T ss_dssp CBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTCCCCSCCCCCEEEECCCCCC
T ss_pred CcEEEeccccccccccccccCHHHHHHHHHHHHcCCCCCcCCcCCCCeeEEeCCC
Confidence 5599999999997655556788999999999999999999999999999999864
No 2
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=99.20 E-value=3e-11 Score=79.26 Aligned_cols=55 Identities=58% Similarity=1.145 Sum_probs=46.7
Q ss_pred eEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCC
Q 034969 20 FQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ 74 (77)
Q Consensus 20 ~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~ 74 (77)
|+++|+|++|+.++......+..+|+++|++++++++++.++++++||+|+|+++
T Consensus 141 G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~~~~~~~~~~~gC~~~~~~~ 195 (196)
T 2ywi_A 141 LKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRPVPEKQKPSIGCSIKWKPS 195 (196)
T ss_dssp CBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTCCCCSCCCCCEEEECCCCCC
T ss_pred CeEEEccccCcccccccCccCHHHHHHHHHHHHcCCCCCCCCCCCCceeeeeccC
Confidence 4599999999985422223467899999999999999999999999999999876
No 3
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=99.14 E-value=5e-11 Score=78.17 Aligned_cols=55 Identities=35% Similarity=0.716 Sum_probs=46.2
Q ss_pred eEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969 20 FQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 75 (77)
Q Consensus 20 ~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~ 75 (77)
|+++|+|.+|+.++ .....+..+|+++|++++++++++.++++++||+|+|++++
T Consensus 127 G~i~~~g~~~~~~~-~~g~~~~~~l~~~i~~ll~~~~~~~~~~~~~gc~~~~~~~~ 181 (188)
T 2cvb_A 127 RLLRYHGRVNDNPK-DPSKVQSHDLEAAIEALLRGEEPPLKEAPAIGCTIKWRPGN 181 (188)
T ss_dssp CBEEEEECSSSCTT-CGGGCCCCHHHHHHHHHHTTCCCCSSCCCCCSEECCCCTTC
T ss_pred CcEEEEEecCCccc-cccccCHHHHHHHHHHHHcCCCCCcccCCCCceEEEecCCC
Confidence 45999999998753 22234567899999999999999999999999999998765
No 4
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=96.57 E-value=0.002 Score=42.38 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969 40 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 75 (77)
Q Consensus 40 t~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~ 75 (77)
...+|.++|++|.. ..++|+.||+++|+++.
T Consensus 143 ~~~~l~~~l~~l~~-----~~~~p~~~~p~~w~~~~ 173 (186)
T 1n8j_A 143 DASDLLRKIKAAQY-----VAAHPGEVCPAKWKEGE 173 (186)
T ss_dssp CHHHHHHHHHHHHH-----HHHSTTCBBCTTCCTTS
T ss_pred CHHHHHHHHHHHHH-----HhhcCCCccCCCCCCCC
Confidence 46789999999986 44577999999999764
No 5
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=96.53 E-value=0.0041 Score=42.18 Aligned_cols=45 Identities=7% Similarity=0.007 Sum_probs=20.4
Q ss_pred eEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969 20 FQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 75 (77)
Q Consensus 20 ~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~ 75 (77)
|+++|+.. .+... .....++.++|++|+.. +.++.+|+++|+++.
T Consensus 157 G~I~~~~~-g~~~~----~~~~~ell~~l~~l~~~------~~~~~~cp~~W~~g~ 201 (220)
T 1zye_A 157 GVIKHLSV-NDLPV----GRSVEETLRLVKAFQFV------EAHGEVSPANWTPES 201 (220)
T ss_dssp SBEEEEEE-ECTTC----CCCHHHHHHHHHHHHHT------TC-------------
T ss_pred CEEEEEEe-cCCCC----CCCHHHHHHHHHHhhhh------cccCCccCCCCCCCC
Confidence 45777653 22211 13577899999999976 467899999998764
No 6
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=96.48 E-value=0.0013 Score=44.58 Aligned_cols=52 Identities=12% Similarity=-0.001 Sum_probs=34.5
Q ss_pred eeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969 11 ANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 75 (77)
Q Consensus 11 ~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~ 75 (77)
.|..|.+ |+++|+..-+.. . .....+|.++|+++...+ ++++||++||+++.
T Consensus 145 ~~lID~~--G~i~~~~~~~~~-~----~~~~~ell~~l~~l~~~~------~~~~~cp~~w~~g~ 196 (213)
T 2i81_A 145 FVLIDMN--GIVQHLLVNNLA-I----GRSVDEILRIIDAIQHHE------KYGDVCPANWQKGK 196 (213)
T ss_dssp EEEECTT--SBEEEEEEECTT-C----CCCHHHHHHHHHHHHHHH------HHCCBCCTTCCTTS
T ss_pred EEEECCC--CEEEEEEecCCC-C----CCCHHHHHHHHHHHHhhh------hcCCCcCCCCCcCC
Confidence 3444443 558888532222 1 125778999999998643 46899999998764
No 7
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=96.00 E-value=0.0039 Score=42.13 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=33.8
Q ss_pred ceeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969 10 GANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 75 (77)
Q Consensus 10 ~~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~ 75 (77)
..|..|.+ |+++|+..=+.. . .....++.++|++|... +++++||+++|++++
T Consensus 141 ~~~lID~~--G~I~~~~~g~~~-~----~~~~~ell~~l~~l~~~------~~~~~~~p~~w~~g~ 193 (211)
T 2pn8_A 141 GLFIIDDK--GILRQITLNDLP-V----GRSVDETLRLVQAFQYT------DKHGEVCPAGWKPGS 193 (211)
T ss_dssp EEEEECTT--SBEEEEEEECTT-B----CCCHHHHHHHHHHHHHH------HHHCCBBCTTCCTTS
T ss_pred eEEEECCC--CEEEEEEecCCC-C----CCCHHHHHHHHHHhhhc------ccCCcccCCCCCCCC
Confidence 34444443 457776432111 1 12466889999998865 556899999998764
No 8
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=95.95 E-value=0.0044 Score=40.70 Aligned_cols=30 Identities=10% Similarity=0.269 Sum_probs=23.1
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969 40 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 75 (77)
Q Consensus 40 t~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~ 75 (77)
...++.++|+++... ++++.||+++|+++.
T Consensus 150 ~~~e~l~~l~~l~~~------~~~~~~cp~~w~~g~ 179 (197)
T 1qmv_A 150 SVDEALRLVQAFQYT------DEHGEVCPAGWKPGS 179 (197)
T ss_dssp CHHHHHHHHHHHHHH------HHHCCBBCTTCCTTS
T ss_pred CHHHHHHHHHhcchh------hccCCccCCCcCcCC
Confidence 456788888888653 367999999999864
No 9
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=95.45 E-value=0.0075 Score=40.83 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969 41 GRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 75 (77)
Q Consensus 41 ~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~ 75 (77)
...+.++|+++ +.+ +++++||+|+|+++.
T Consensus 186 ~~~il~~l~~l---~~~---~~~~~~c~~~w~~~~ 214 (222)
T 3ztl_A 186 VDETLRLLDAF---QFV---EKHGEVCPVNWKRGQ 214 (222)
T ss_dssp HHHHHHHHHHH---HHH---HHHSCBBCTTCCTTS
T ss_pred HHHHHHHHHHh---hcc---cccCccCCcCcCCCC
Confidence 34444444444 333 678999999999764
No 10
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=95.32 E-value=0.007 Score=39.45 Aligned_cols=45 Identities=11% Similarity=0.006 Sum_probs=30.1
Q ss_pred eEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969 20 FQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 75 (77)
Q Consensus 20 ~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~ 75 (77)
|+++|+..=+.. . .....++.++|+++... ++.+.||+++|+++.
T Consensus 131 G~i~~~~~g~~~-~----~~~~~~l~~~l~~l~~~------~~~~~~cp~~w~~~~ 175 (192)
T 2h01_A 131 GVVQHLLVNNLA-L----GRSVDEILRLIDALQHH------EKYGDVCPANWQKGK 175 (192)
T ss_dssp SBEEEEEEGGGS-S----GGGHHHHHHHHHHHHHH------HHHCCCCCSSCCCC-
T ss_pred CEEEEEEeCCCC-C----CCCHHHHHHHHHHHhhh------hhcCCCccCCCCCCC
Confidence 457777542221 1 13567899999998864 345899999998764
No 11
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=94.68 E-value=0.022 Score=38.99 Aligned_cols=52 Identities=12% Similarity=0.116 Sum_probs=27.3
Q ss_pred eeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969 11 ANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 75 (77)
Q Consensus 11 ~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~ 75 (77)
.|..|.+ |+++|+-.=+.. . ......+.++|++|... ++.++||+++|+++.
T Consensus 149 ~~lID~~--G~I~~~~~g~~~-~----~~~~~ell~~l~~L~~~------~~~~~~cp~~W~~g~ 200 (221)
T 2c0d_A 149 LFIIDKN--GCVRHQTVNDLP-I----GRNVQEVLRTIDSIIHV------DTSGEVCPINWKKGQ 200 (221)
T ss_dssp EEEECTT--SBEEEEEEECTT-C----CCCHHHHHHHHHHHHHH------HHHCCSCC-------
T ss_pred EEEECCC--CeEEEEEecCCC-C----CCCHHHHHHHHHHHhhh------hcCCCcCCCCCCCCC
Confidence 4444543 457776321111 1 12567899999998864 446899999998764
No 12
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=94.43 E-value=0.0035 Score=43.53 Aligned_cols=52 Identities=13% Similarity=0.082 Sum_probs=29.6
Q ss_pred eeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969 11 ANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 75 (77)
Q Consensus 11 ~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~ 75 (77)
.|..|.+ |+|+|+..-+.. . .....++.++|+++.. +. ...+||++||++++
T Consensus 171 ~flID~~--G~I~~~~~~~~~-~----~~~~~eil~~l~~lq~---~~---~~~~~cp~~W~~g~ 222 (240)
T 3qpm_A 171 LFIIDEK--GVLRQITMNDLP-V----GRSVDETLRLVQAFQY---TD---KHGEVCPAGWKPGS 222 (240)
T ss_dssp EEEECTT--SBEEEEEEECTT-B----CCCHHHHHHHHHHHHH---HH---HHSCBBCTTCCTTS
T ss_pred EEEEcCC--CeEEEEEecCCC-C----CCCHHHHHHHHHHhhh---hh---hcCCccCCCCCCCC
Confidence 4445553 568887543222 1 1234556666666542 21 23899999999874
No 13
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=94.21 E-value=0.024 Score=39.87 Aligned_cols=53 Identities=13% Similarity=0.048 Sum_probs=20.3
Q ss_pred ceeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969 10 GANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 75 (77)
Q Consensus 10 ~~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~ 75 (77)
..|..|.+ |+|+|+-.-+.. . .....++.++|+++.... ...+||+++|++++
T Consensus 184 ~tflID~~--G~I~~~~~~~~~-~----~~~~~eil~~L~alq~~~------~~~~~cp~~W~~g~ 236 (254)
T 3tjj_A 184 GLFIIDDK--GILRQITLNDLP-V----GRSVDETLRLVQAFQYTD------KHGEVAPAGWKPGS 236 (254)
T ss_dssp EEEEECTT--SBEEEEEEECTT-C----CCCHHHHHHHHHHHHHHH------HHC-----------
T ss_pred eEEEECCC--CeEEEEEecCCC-C----CCCHHHHHHHHHhhcccc------ccCccccCCCCCCC
Confidence 34555553 568877543222 1 123455666666654321 12789999999875
No 14
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=94.12 E-value=0.032 Score=36.74 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969 40 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 75 (77)
Q Consensus 40 t~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~ 75 (77)
+..+|.++|+++... +....+|+++|+++.
T Consensus 152 ~~~ell~~l~~l~~~------~~~~~~~p~~w~~g~ 181 (202)
T 1uul_A 152 DVDEALRLVKAFQFV------EKHGEVCPANWKPGD 181 (202)
T ss_dssp CHHHHHHHHHHHHHH------HHHSCBBCTTCCTTS
T ss_pred CHHHHHHHHHHhhhh------hhcCCccCCCcCCCC
Confidence 577899999999864 346899999998764
No 15
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=93.14 E-value=0.086 Score=33.92 Aligned_cols=31 Identities=13% Similarity=0.308 Sum_probs=17.9
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969 40 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 75 (77)
Q Consensus 40 t~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~ 75 (77)
+..+|.++|++++..+ ++|..+|+++|.++.
T Consensus 144 ~~~~l~~~l~~l~~~~-----~~~~~~~p~~w~~~~ 174 (187)
T 1we0_A 144 DASTLINKVKAAQYVR-----ENPGEVCPAKWEEGG 174 (187)
T ss_dssp CTTHHHHHHHHHHHHH-----TSTTCCC--------
T ss_pred CHHHHHHHHHHHhhhh-----hCCCcccccccccCC
Confidence 3457889999998753 577899999998764
No 16
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=89.59 E-value=0.25 Score=34.16 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=34.9
Q ss_pred cceeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969 9 SGANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 75 (77)
Q Consensus 9 ~~~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~ 75 (77)
-.+|..|.+ ++|+|+-.-+... . -...++.++|++|.... ...++|+++|+++.
T Consensus 128 p~~fiID~~--G~I~~~~~~~~~~-g----r~~~eilr~l~~Lq~~~------~~~~~~p~~W~~g~ 181 (233)
T 2v2g_A 128 RAVFIIGPD--KKLKLSILYPATT-G----RNFSEILRVIDSLQLTA------QKKVATPADWQPGD 181 (233)
T ss_dssp EEEEEECTT--SBEEEEEEECTTB-C----CCHHHHHHHHHHHHHHH------HSSEEBCTTCCTTS
T ss_pred ceEEEECCC--CEEEEEEecCCCC-C----CCHHHHHHHHHHHHhhc------cCCccCCCCcCcCC
Confidence 456666665 4465554322221 1 14678999999998753 34899999998764
No 17
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=87.39 E-value=1.2 Score=28.75 Aligned_cols=26 Identities=12% Similarity=0.332 Sum_probs=12.2
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969 40 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 75 (77)
Q Consensus 40 t~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~ 75 (77)
...+|.++|+++++ ..+|+++|+++.
T Consensus 157 ~~~~l~~~l~~l~~----------~~~~p~~w~~~~ 182 (195)
T 2bmx_A 157 NVDEVLRVLDALQS----------DELCASNWRKGD 182 (195)
T ss_dssp CHHHHHHHHHHHHC----------------------
T ss_pred CHHHHHHHHHHHhh----------CCCcCcccccCC
Confidence 46789999999987 348999998653
No 18
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=82.18 E-value=0.73 Score=31.31 Aligned_cols=53 Identities=8% Similarity=0.019 Sum_probs=33.5
Q ss_pred ceeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969 10 GANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 75 (77)
Q Consensus 10 ~~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~ 75 (77)
.+|..|.+ |+|+++-.-+... .-...++.++|++|.... ...+.|.++|++|.
T Consensus 133 ~~fiID~~--G~I~~~~~~~~~~-----gr~~~eil~~i~~l~~~~------~~~~~~p~~W~~g~ 185 (224)
T 1prx_A 133 VVFVFGPD--KKLKLSILYPATT-----GRNFDEILRVVISLQLTA------EKRVATPVDWKDGD 185 (224)
T ss_dssp EEEEECTT--SBEEEEEECCTTB-----CCCHHHHHHHHHHHHHHH------HHCEEBCTTCCTTS
T ss_pred EEEEECCC--CEEEEEEecCCCC-----CCCHHHHHHHHHHHHhhc------cCCcCCCCCCCCCC
Confidence 45666665 4465554322221 114678999999998753 23689999998764
No 19
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=78.86 E-value=1.5 Score=29.71 Aligned_cols=54 Identities=6% Similarity=0.081 Sum_probs=33.5
Q ss_pred cceeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969 9 SGANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 75 (77)
Q Consensus 9 ~~~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~ 75 (77)
-.+|..|.+ |+|+|+-.-+.. . .....+|..+|++|....+ ..+.|.++|++|.
T Consensus 129 p~~flID~~--G~I~~~~~~~~~-~----g~~~~ell~~i~~lq~~~~------~~~~~p~~w~~g~ 182 (220)
T 1xcc_A 129 RCLFFISPE--KKIKATVLYPAT-T----GRNAHEILRVLKSLQLTYT------TPVATPVNWNEGD 182 (220)
T ss_dssp EEEEEECTT--SBEEEEEEECTT-B----CCCHHHHHHHHHHHHHHHH------SSEEBCTTCCTTS
T ss_pred ceEEEECCC--CEEEEEEecCCC-C----CCCHHHHHHHHHHHHhhhc------CCcccCCCcCcCC
Confidence 456666665 445555321111 1 1256789999999976442 3788999998764
No 20
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=74.80 E-value=2.9 Score=26.83 Aligned_cols=29 Identities=10% Similarity=0.320 Sum_probs=18.1
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCC
Q 034969 40 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ 74 (77)
Q Consensus 40 t~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~ 74 (77)
+..+|.++|+++...+ ....+|..+|+.+
T Consensus 148 ~~~~l~~~l~~l~~~~------~~~~~~p~~w~~~ 176 (198)
T 1zof_A 148 NADEMLRMVDALLHFE------EHGEVCPAGWRKG 176 (198)
T ss_dssp HHHHHHHHHHHHHHHH------SSCCCCC------
T ss_pred CHHHHHHHHHHHHHhh------ccCCccCCcCcCC
Confidence 5678999999998643 3588899999764
No 21
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=74.32 E-value=1.4 Score=30.92 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=32.2
Q ss_pred ceeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeC
Q 034969 10 GANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHP 73 (77)
Q Consensus 10 ~~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~ 73 (77)
++|..|.+ |+++++..-+... .-...+|..+|+++.... ....+|+++| +
T Consensus 126 ~~fIID~d--G~I~~~~~~~~~~-----gr~~~Ellr~I~alq~~~------~~~~~~Pa~W-~ 175 (249)
T 3a2v_A 126 GVFIVDAR--GVIRTMLYYPMEL-----GRLVDEILRIVKALKLGD------SLKRAVPADW-P 175 (249)
T ss_dssp EEEEECTT--SBEEEEEEECTTB-----CCCHHHHHHHHHHHHHHH------HHTCBBCTTT-T
T ss_pred eEEEECCC--CeEEEEEecCCcc-----cchhHHHHHHHHHHHhcc------ccCccCCCCC-C
Confidence 34555554 4577665433221 124678999999998754 2478999999 7
No 22
>1q2j_A MU-conotoxin SMIIIA; HET: PCA; NMR {Synthetic} SCOP: j.30.1.1 PDB: 2yen_A*
Probab=60.19 E-value=2.3 Score=21.00 Aligned_cols=15 Identities=27% Similarity=0.678 Sum_probs=12.0
Q ss_pred CCccceeeeeCCCCC
Q 034969 63 PSVGCSIKWHPQTVQ 77 (77)
Q Consensus 63 ~siGCsIKwk~~~~~ 77 (77)
.|-|||-+|-..++|
T Consensus 6 ~pngCs~rWCrdhar 20 (26)
T 1q2j_A 6 GRRGCSSRWCRDHSR 20 (26)
T ss_dssp SSSCCCSSSSSSSSS
T ss_pred CCCcccchhhcccce
Confidence 467999999777765
No 23
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=56.15 E-value=13 Score=27.70 Aligned_cols=32 Identities=3% Similarity=-0.016 Sum_probs=25.8
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.|.|.||.||.-...+..+.-.+++++|.+
T Consensus 431 dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~ 462 (548)
T 2d1s_A 431 EKHFFIVDRLKSLIKYKGYQVPPAELESVLLQ 462 (548)
T ss_dssp TCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHT
T ss_pred CCeEEEeccccceEEECCEEECHHHHHHHHHh
Confidence 35699999999997666777788888888765
No 24
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=52.48 E-value=13 Score=25.76 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=20.6
Q ss_pred cceeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969 9 SGANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 75 (77)
Q Consensus 9 ~~~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~ 75 (77)
-++|.-|.+ ++|+|.= +.+.. ..-...++-.+|++|..-+ .....|+.+|++|+
T Consensus 148 R~tFiIDp~--g~Ir~~~-~~~~~----~gr~~~EvLr~l~aLQ~~~------~~~~~~Pa~W~~G~ 201 (219)
T 3tue_A 148 RGLFIIDPH--GMLRQIT-VNDMP----VGRSVEEVLRLLEAFQFVE------KHGEVCPANWKKGD 201 (219)
T ss_dssp EEEEEECTT--SBEEEEE-EECTT----CCCCHHHHHHHHHHHHHHH------HC------------
T ss_pred EEEEEECCC--CeEEEEE-EecCC----CCCCHHHHHHHHHHhhhHH------hcCCCcCCCCCCCC
Confidence 345666664 5566552 22221 1123456777777775432 23568999999864
No 25
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=51.72 E-value=14 Score=26.85 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=22.3
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.|.+.||.||.-...+..+.-.+++++|.+
T Consensus 393 dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~ 424 (521)
T 3l8c_A 393 DNILLYGGRLDFQIKYAGYRIELEDVSQQLNQ 424 (521)
T ss_dssp SSCEEEEEEGGGBCC-----CBHHHHHHHHHT
T ss_pred CCeEEEeCcccceEeECCEEeCHHHHHHHHHc
Confidence 46699999999997666777788888888765
No 26
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=51.35 E-value=17 Score=27.95 Aligned_cols=32 Identities=19% Similarity=0.100 Sum_probs=26.5
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
+|.|.+.||+||.-...+..+.-.+++++|.+
T Consensus 516 dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~ 547 (663)
T 1ry2_A 516 DGYIWILGRVDDVVNVSGHRLSTAEIEAAIIE 547 (663)
T ss_dssp TCCEEECSCTTSCBCSSSCCBCHHHHHHHHHS
T ss_pred CCCEEEEeecCCEEEECCEEcCHHHHHHHHHh
Confidence 36699999999997767777888899888864
No 27
>2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
Probab=49.91 E-value=18 Score=22.63 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=28.2
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCCCCcccee
Q 034969 39 VTGRDIRLAIECVLSGQPVSSNQKPSVGCSI 69 (77)
Q Consensus 39 vt~~yL~~AI~allaGk~v~~~~T~siGCsI 69 (77)
.....++++|..+|.-+.-+-...|.+||.+
T Consensus 29 ~~~~~I~qsI~~iL~T~~G~r~~~pdyGs~l 59 (134)
T 2ia7_A 29 SAEEDIAESIRIILGTARGERVMRPDFGCGI 59 (134)
T ss_dssp CHHHHHHHHHHHHHTCCTTSSTTCTTCSCGG
T ss_pred ccHHHHHHHHHHHHCCCCCCcccCcccCCCc
Confidence 4577899999999999999999999999986
No 28
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=49.78 E-value=17 Score=26.54 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=21.8
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.|.|.||.||.-...+..+.-.+++++|.+
T Consensus 419 ~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 450 (529)
T 2v7b_A 419 NGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQ 450 (529)
T ss_dssp TSCEEEEEEGGGCBC----CBCHHHHHHHHTT
T ss_pred CccEEEeCccCCeEEECCEEECHHHHHHHHHh
Confidence 36699999999997666667777777777653
No 29
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=49.32 E-value=8.4 Score=27.26 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=26.1
Q ss_pred EEEeeeccCCCCCCCCCCcHHHHHHHHHHHHc
Q 034969 22 LVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 53 (77)
Q Consensus 22 L~Y~GrIDD~~~~~~~~vt~~yL~~AI~alla 53 (77)
+.|.||.||.-...+..+.-.+++++|.++..
T Consensus 243 ~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~ 274 (358)
T 4gs5_A 243 FQWIGRADNVINSGGVKIVLDQIDQRIAAVFH 274 (358)
T ss_dssp EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHH
T ss_pred eEEcccccCeEEECCEEECHHHHHHHHHHhcc
Confidence 88999999986656667788899998887764
No 30
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=48.65 E-value=12 Score=27.69 Aligned_cols=32 Identities=3% Similarity=0.010 Sum_probs=15.3
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
+|.|.|.||.||.-...+..+.-.+++++|.+
T Consensus 429 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 460 (549)
T 3g7s_A 429 EGFLHFQDRVKEVIKYKGYTIAPFELEALLMK 460 (549)
T ss_dssp TSCEEEEEEC------------CHHHHHHHTT
T ss_pred CceEEEeccccceEEECCEEECHHHHHHHHHh
Confidence 46799999999996655656666677776654
No 31
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=48.37 E-value=8.6 Score=28.50 Aligned_cols=32 Identities=16% Similarity=0.107 Sum_probs=9.6
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
+|.|.|.||.||.-...+..+.-.+++++|.+
T Consensus 429 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 460 (544)
T 3o83_A 429 DGNLRVVGRIKDQINRGGEKIASEEIEKLILL 460 (544)
T ss_dssp TSCEEEEEEEC---------------------
T ss_pred CCCEEEEeecCCEEEeCCEEECHHHHHHHHHh
Confidence 46799999999986655555555666666643
No 32
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=48.21 E-value=8.6 Score=28.42 Aligned_cols=33 Identities=9% Similarity=0.174 Sum_probs=8.7
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
+|.|.|.||.||.-...+..+.-.+++++|.+.
T Consensus 417 dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~ 449 (562)
T 3ite_A 417 DSSILFLGRKDEQVKVRGQRLELGEVSEVIRSL 449 (562)
T ss_dssp TSCEEEEEEC-----------------------
T ss_pred CCeEEEEccccCEEeECcEEECHHHHHHHHHhc
Confidence 467999999999976666666666777776543
No 33
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=47.46 E-value=12 Score=27.60 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=24.5
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
+|.|.|.||.||.-...+..+.-.+++++|.+
T Consensus 420 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 451 (539)
T 1mdb_A 420 DGYIVVEGRAKDQINRGGEKVAAEEVENHLLA 451 (539)
T ss_dssp TSCEEEEEEGGGCEECSSCEECHHHHHHHHTT
T ss_pred CCcEEEeccccceEEECCEEECHHHHHHHHHh
Confidence 46799999999997666666677777777753
No 34
>1za8_A VHL-1; circular protein, cyclic cystine knot motif, antiviral protein; NMR {Viola hederacea}
Probab=47.12 E-value=4.4 Score=20.81 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=10.2
Q ss_pred CCCCccceeeee
Q 034969 61 QKPSVGCSIKWH 72 (77)
Q Consensus 61 ~T~siGCsIKwk 72 (77)
.|+.+||+=||+
T Consensus 12 ~T~~~GCsC~~~ 23 (31)
T 1za8_A 12 FTEVIGCSCKNK 23 (31)
T ss_dssp GGGTTTCEEETT
T ss_pred ccCCCCcccCCC
Confidence 578899999985
No 35
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=46.26 E-value=11 Score=27.40 Aligned_cols=32 Identities=9% Similarity=-0.114 Sum_probs=24.7
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.|.|.||.||.-...+..+.-.+++++|.+
T Consensus 388 ~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~ 419 (501)
T 3ipl_A 388 EGYVMIYDRRKDLIISGGENIYPYQIETVAKQ 419 (501)
T ss_dssp TSCEEEEEECCCCEECSSCEECHHHHHHHHTT
T ss_pred CCeEEEEccccceEEECCEEECHHHHHHHHHh
Confidence 46799999999997666666777788777654
No 36
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=44.99 E-value=9.1 Score=29.31 Aligned_cols=33 Identities=15% Similarity=0.059 Sum_probs=26.2
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
+|.|.|.||+||.-...+..+.-.+++++|.+.
T Consensus 507 dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~ 539 (652)
T 1pg4_A 507 DGYYWITGRVDDVLNVSGHRLGTAEIESALVAH 539 (652)
T ss_dssp TSCEEEEEESSSEEEETTEEEEHHHHHHHHHHS
T ss_pred CCcEEEEecCCCEEEECCEEECHHHHHHHHHhC
Confidence 366999999999966666667788888888753
No 37
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=44.49 E-value=9.8 Score=27.76 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=23.4
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
+|.|.|.||.||.-...+..+.-.+++++|.+
T Consensus 392 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 423 (504)
T 1t5h_X 392 EGTVRILGRVDDMIISGGENIHPSEIERVLGT 423 (504)
T ss_dssp TSCEEEEEEGGGCEEETTEEECHHHHHHHHTT
T ss_pred CceEEEeCcccCEEEECCEEECHHHHHHHHHh
Confidence 36699999999986555556666777776643
No 38
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=44.06 E-value=40 Score=23.17 Aligned_cols=55 Identities=11% Similarity=0.045 Sum_probs=32.9
Q ss_pred ecceeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969 8 SSGANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 75 (77)
Q Consensus 8 ~~~~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~ 75 (77)
.-++|.-|.+ ++|+|. -+.+... .-...++-.+|+||.-..+ ....|..+|++|.
T Consensus 143 ~R~tFiID~~--G~Ir~~-~v~~~~~----grn~dEiLr~l~AlQ~~~~------~~~~~Pa~W~~G~ 197 (216)
T 3sbc_A 143 LRGLFIIDPK--GVIRHI-TINDLPV----GRNVDEALRLVEAFQWTDK------NGTVLPCNWTPGA 197 (216)
T ss_dssp CEEEEEECTT--SBEEEE-EEECTTB----CCCHHHHHHHHHHHHHHHH------HCCBBCTTCCTTS
T ss_pred eeEEEEECCC--CeEEEE-EEcCCCC----CCCHHHHHHHHHHhhhHhh------cCCCcCCCCCCCC
Confidence 3567888875 788886 3444321 1245566678888763221 1347888898765
No 39
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=43.87 E-value=10 Score=28.02 Aligned_cols=32 Identities=6% Similarity=0.071 Sum_probs=24.8
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.|.|.||.||.-...+..+.-.+++++|.+
T Consensus 424 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 455 (536)
T 3ni2_A 424 DDELFIVDRLKELIKYKGFQVAPAELEALLIA 455 (536)
T ss_dssp TSCEEEEEECSCCEEETTEEECHHHHHHHHHT
T ss_pred CceEEEEecccceEEECCEEECHHHHHHHHHh
Confidence 46799999999986656666777788877764
No 40
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=42.90 E-value=6.7 Score=29.64 Aligned_cols=32 Identities=9% Similarity=0.047 Sum_probs=24.0
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
+|.|.|.||.||+-..++..+.-.+++.+|.+
T Consensus 424 dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~ 455 (617)
T 3rg2_A 424 EGYITVQGREKDQINRGGEKIAAEEIENLLLR 455 (617)
T ss_dssp TSCEEEEEECSSEEEETTEEEEHHHHHHHHTT
T ss_pred CceEEEEeecCCEEEECCEEeCHHHHHHHHHh
Confidence 36799999999996655666666777777654
No 41
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=42.38 E-value=11 Score=28.09 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=7.7
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
+|.|.|.||+||.-..++..+.-.+++++|.+
T Consensus 459 dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~ 490 (570)
T 4gr5_A 459 DGVLEYVGRADDQVKIRGFRVEPGEVEARLVG 490 (570)
T ss_dssp TSCEEEEEC-----------------------
T ss_pred CCeEEEEcccCCEEEECcEEeCHHHHHHHHhc
Confidence 46799999999986655555555566666543
No 42
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=41.24 E-value=60 Score=19.87 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=22.1
Q ss_pred ceeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 10 GANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 10 ~~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
..|..|.+ |+++|+..-++.. . .....++.++|++|
T Consensus 121 ~tflID~~--G~I~~~~~~~~~~-~---~~~~~eil~~l~~L 156 (157)
T 4g2e_A 121 AVFVIDKE--GKVRYKWVSDDPT-K---EPPYDEIEKVVKSL 156 (157)
T ss_dssp EEEEECTT--SBEEEEEEESSTT-C---CCCHHHHHHHHHHT
T ss_pred eEEEECCC--CEEEEEEECCCCC-C---CCCHHHHHHHHHHh
Confidence 35666654 6799887644432 1 12456788888876
No 43
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=41.05 E-value=8.7 Score=29.42 Aligned_cols=32 Identities=13% Similarity=0.043 Sum_probs=24.6
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
+|.|.|.||.||+-.-.+..+.-.+++.+|.+
T Consensus 409 dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~ 440 (620)
T 4dg8_A 409 QGRLRFIGRGDGQVKLNGYRLDLPALEQRFRR 440 (620)
T ss_dssp TSCEEEEECSSSEEEETTEEEEHHHHHHHHHT
T ss_pred CCeEEEEccCCCEEEECCEEcCHHHHHHHHHh
Confidence 36799999999996656666677788877765
No 44
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=40.99 E-value=11 Score=27.96 Aligned_cols=32 Identities=3% Similarity=-0.029 Sum_probs=5.7
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.|.|.||.||.-...+..+.-.+++++|.+
T Consensus 429 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 460 (550)
T 3rix_A 429 DEHFFIVDRLKSLIKYKGYQVAPAELESILLQ 460 (550)
T ss_dssp TCCEEEC-------------------------
T ss_pred CceEEEEecchheeEECCEEECHHHHHHHHHh
Confidence 46799999999986655555555566666544
No 45
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=40.95 E-value=11 Score=27.44 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=26.1
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.|.||.||.-...+..+.-.+++++|.+.
T Consensus 389 dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~ 421 (512)
T 3fce_A 389 NGLLFYNGRLDFQIKLHGYRMELEEIEHHLRAC 421 (512)
T ss_dssp TTEEEEEEEGGGCEEETTEEECHHHHHHHHHHS
T ss_pred CCEEEEecccCCEEEECCEEECHHHHHHHHHhC
Confidence 357999999999976666677778888888763
No 46
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=39.45 E-value=12 Score=28.08 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=24.5
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
+|.|.|.||.||.-...+..+.-.+++++|.+
T Consensus 446 dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~ 477 (570)
T 3c5e_A 446 DGYFQFMGRADDIINSSGYRIGPSEVENALME 477 (570)
T ss_dssp TSCEEEEEEGGGCEEETTEEECHHHHHHHHHT
T ss_pred CceEEEEecCCCEEEECCEEECHHHHHHHHHh
Confidence 36799999999996656666677788777764
No 47
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=38.40 E-value=9.2 Score=28.05 Aligned_cols=32 Identities=16% Similarity=0.096 Sum_probs=25.0
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.|.|.||.||.-...+..+.-.+++++|.+
T Consensus 389 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 420 (503)
T 4fuq_A 389 RGYVHILGRGKDLVITGGFNVYPKEIESEIDA 420 (503)
T ss_dssp TCEEEECCSSTTCEEETTEEECHHHHHHHHHT
T ss_pred CCcEEEEecCCCEEEECCEEECHHHHHHHHHh
Confidence 47899999999986656666677788887764
No 48
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=38.21 E-value=6.8 Score=27.41 Aligned_cols=13 Identities=31% Similarity=0.578 Sum_probs=11.0
Q ss_pred CCccceeeeeCCC
Q 034969 63 PSVGCSIKWHPQT 75 (77)
Q Consensus 63 ~siGCsIKwk~~~ 75 (77)
.+.||.|+|++|.
T Consensus 152 ~s~~t~I~Wk~gk 164 (225)
T 2e50_A 152 SSKSTEIKWKSGK 164 (225)
T ss_dssp CEEECCCCBCSSC
T ss_pred ccCCCcceecCCC
Confidence 5789999999874
No 49
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=37.56 E-value=9.3 Score=27.98 Aligned_cols=32 Identities=19% Similarity=0.043 Sum_probs=24.1
Q ss_pred eEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 20 FQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 20 ~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
+.|.|.||.||.-...+..+.-.+++++|.+.
T Consensus 452 G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 483 (576)
T 3gqw_A 452 GYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQE 483 (576)
T ss_dssp TEEEEEEETTTCEEETTEEECHHHHHHHHTTS
T ss_pred CEEEEEecCcceEEECCEEECHHHHHHHHHhC
Confidence 57999999999866556666677777776653
No 50
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=36.34 E-value=46 Score=26.56 Aligned_cols=34 Identities=6% Similarity=-0.002 Sum_probs=29.8
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 52 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~all 52 (77)
..++++.||.++.-...++.++...+++||....
T Consensus 427 ~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~ 460 (609)
T 4b2g_A 427 APQFHFVRRKNVLLSIDSDKTDEAELQKAVDNAS 460 (609)
T ss_dssp EEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHH
T ss_pred CcEEEEEEecCCeEEccccCCCHHHHHHHHHHHH
Confidence 4579999999998777788999999999999766
No 51
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=36.10 E-value=26 Score=20.81 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=15.9
Q ss_pred CCcHHHHHHHHHHHHcCC
Q 034969 38 PVTGRDIRLAIECVLSGQ 55 (77)
Q Consensus 38 ~vt~~yL~~AI~allaGk 55 (77)
.-++..|..||+++..|+
T Consensus 13 ~Yte~~L~~Ai~aVr~g~ 30 (70)
T 2cob_A 13 QYNSEILEEAISVVMSGK 30 (70)
T ss_dssp CCCHHHHHHHHHHHHTTS
T ss_pred ccCHHHHHHHHHHHHcCC
Confidence 458999999999999986
No 52
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=35.71 E-value=15 Score=26.95 Aligned_cols=32 Identities=19% Similarity=0.011 Sum_probs=23.9
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
+|.|.|.||.||.-...+..+.-.+++++|.+
T Consensus 403 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 434 (517)
T 3r44_A 403 EGYLYIKDRLKDMIISGGENVYPAEIESVIIG 434 (517)
T ss_dssp TSCEEEEECGGGCEEETTEEECHHHHHHHHTT
T ss_pred CeeEEEecCCcCEEEECCEEECHHHHHHHHHh
Confidence 36799999999996655666667777777653
No 53
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=35.08 E-value=18 Score=27.25 Aligned_cols=32 Identities=19% Similarity=0.119 Sum_probs=24.3
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
+|.|.|.||+||.-...+..+.-.+++++|.+
T Consensus 465 dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~ 496 (580)
T 3etc_A 465 DGYLWFVGRADDIIKTSGYKVGPFEVESALIQ 496 (580)
T ss_dssp TSCEEEEEESSSCEEETTEEECHHHHHHHHTT
T ss_pred CCcEEEEecCCCEEEECCEEECHHHHHHHHHh
Confidence 46799999999996655666677788877754
No 54
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=34.65 E-value=14 Score=27.03 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=26.0
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
++.|.|.||.||.-...+..+.-.+++++|.+.
T Consensus 388 dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~ 420 (511)
T 3e7w_A 388 DGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQS 420 (511)
T ss_dssp TTEEEEEEESSSEEEETTEEEEHHHHHHHHHHS
T ss_pred CCeEEEEccccCEEEECCEEeCHHHHHHHHHhC
Confidence 357999999999866666667778888888763
No 55
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=34.31 E-value=35 Score=21.49 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=11.1
Q ss_pred cHHHHHHHHHHHHcCCCC
Q 034969 40 TGRDIRLAIECVLSGQPV 57 (77)
Q Consensus 40 t~~yL~~AI~allaGk~v 57 (77)
+...|+++|+.+|++.++
T Consensus 170 ~~~~l~~~i~~lL~~~~~ 187 (187)
T 3dwv_A 170 SVKDIEEKLIPLLGSARL 187 (187)
T ss_dssp CHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHhcCCC
Confidence 456799999999987653
No 56
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=34.03 E-value=7.9 Score=29.70 Aligned_cols=13 Identities=31% Similarity=0.874 Sum_probs=10.5
Q ss_pred CCccceeeeeC-CC
Q 034969 63 PSVGCSIKWHP-QT 75 (77)
Q Consensus 63 ~siGCsIKwk~-~~ 75 (77)
.+.||.|+||+ +.
T Consensus 268 ~~egt~I~WK~~Gk 281 (417)
T 2ayu_A 268 HAEGCEISWKDNAH 281 (417)
T ss_dssp EEEECCCCBSCTTT
T ss_pred cccCcceeeecCCC
Confidence 36799999998 53
No 57
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=32.95 E-value=15 Score=27.50 Aligned_cols=32 Identities=13% Similarity=0.118 Sum_probs=23.8
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
+|.|.|.||.||.-...+..+.-.+++++|.+
T Consensus 420 dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~ 451 (563)
T 1amu_A 420 DGNIEYLGRIDNQVKIRGHRVELEEVESILLK 451 (563)
T ss_dssp TSCEEEEEEGGGEEEETTEEEEHHHHHHHHTT
T ss_pred CCeEEEeccccCEEEECCEEeCHHHHHHHHHh
Confidence 35699999999986555666677777777654
No 58
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=32.86 E-value=8.8 Score=29.08 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=10.7
Q ss_pred CCccceeeeeCCC
Q 034969 63 PSVGCSIKWHPQT 75 (77)
Q Consensus 63 ~siGCsIKwk~~~ 75 (77)
.+.||.|+|++|.
T Consensus 194 ~se~t~I~WK~GK 206 (359)
T 3fs3_A 194 HTEATVIDWYDNK 206 (359)
T ss_dssp EEEECCCCBCTTC
T ss_pred cceeeeeeEeCCC
Confidence 3679999999865
No 59
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=32.54 E-value=53 Score=25.98 Aligned_cols=35 Identities=23% Similarity=0.134 Sum_probs=29.8
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHc
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 53 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~alla 53 (77)
.-++++.||.|+.-.-.++.++.+.+++||.....
T Consensus 422 ~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~ 456 (581)
T 4epl_A 422 TPQLKFICRRNLILSINIDKNTERDLQLSVESAAK 456 (581)
T ss_dssp EEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHH
T ss_pred CcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHH
Confidence 35799999999997777889999999999997654
No 60
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=32.21 E-value=23 Score=28.38 Aligned_cols=32 Identities=6% Similarity=0.045 Sum_probs=10.5
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.|.|.||.||.-...+..+.-.+++++|.+
T Consensus 471 dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~ 502 (979)
T 3tsy_A 471 DDELFIVDRLKELIKYKGFQVAPAELEALLIG 502 (979)
T ss_dssp TSCEEEEEESCC--------------------
T ss_pred CceEEEecCCCCEEEECCEEECHHHHHHHHHh
Confidence 36699999999986655555555566666543
No 61
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=31.46 E-value=81 Score=21.63 Aligned_cols=39 Identities=10% Similarity=-0.009 Sum_probs=25.9
Q ss_pred ceeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034969 10 GANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 54 (77)
Q Consensus 10 ~~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaG 54 (77)
.+|..|.+ |+|+|++..++... ...-..+.+||+++...
T Consensus 139 ~tfvID~d--G~I~~~~~~~~~~~----~pd~~evl~~L~~l~~~ 177 (224)
T 3keb_A 139 AIILADAA--NVVHYSERLANTRD----FFDFDAIEKLLQEGEQQ 177 (224)
T ss_dssp EEEEECTT--CBEEEEEECSBTTC----CCCHHHHHHHHHHHHHH
T ss_pred EEEEEcCC--CEEEEEEecCCCCC----CCCHHHHHHHHHHhhhc
Confidence 45666654 78999999876531 12456777888777654
No 62
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=30.57 E-value=8.8 Score=27.42 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=10.9
Q ss_pred CCCccceeeeeCC
Q 034969 62 KPSVGCSIKWHPQ 74 (77)
Q Consensus 62 T~siGCsIKwk~~ 74 (77)
..+.||.|+|+++
T Consensus 139 ~~s~~t~I~WK~g 151 (264)
T 2zd7_A 139 LTSEPVPIEWPQS 151 (264)
T ss_dssp EEECCCCCCCCGG
T ss_pred eeEeecccccCCC
Confidence 4688999999874
No 63
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae}
Probab=30.27 E-value=26 Score=25.95 Aligned_cols=33 Identities=9% Similarity=-0.041 Sum_probs=27.5
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCCCCccceeee
Q 034969 39 VTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 71 (77)
Q Consensus 39 vt~~yL~~AI~allaGk~v~~~~T~siGCsIKw 71 (77)
.+-..+.+++.++...+.+.+..+++-||..|-
T Consensus 214 ~~~~~~~~~v~~~R~~k~p~P~~~~saGS~FkN 246 (357)
T 3i99_A 214 CAIHDVYQRVCATRMEKLPDPAVMGNAGSFFKN 246 (357)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTTSCEEEESBCC
T ss_pred CCHHHHHHHHHHHHhcCCCCCCCCCccceeeeC
Confidence 466788899999998887778889999998874
No 64
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=28.54 E-value=95 Score=18.52 Aligned_cols=16 Identities=13% Similarity=0.017 Sum_probs=12.7
Q ss_pred cHHHHHHHHHHHHcCC
Q 034969 40 TGRDIRLAIECVLSGQ 55 (77)
Q Consensus 40 t~~yL~~AI~allaGk 55 (77)
....|.++|+++++.+
T Consensus 159 ~~~~l~~~l~~ll~~k 174 (174)
T 1xzo_A 159 PYDDIISDVKSASTLK 174 (174)
T ss_dssp CHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 3578999999998754
No 65
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=28.11 E-value=22 Score=29.57 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=25.8
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 51 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~al 51 (77)
+|.|.|.||+||+-.-.+..+.-.+++.+|.+.
T Consensus 851 dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~ 883 (1304)
T 2vsq_A 851 DGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEY 883 (1304)
T ss_dssp TSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHS
T ss_pred CCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhC
Confidence 467999999999966666666777888888763
No 66
>1zq7_A Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8PZK8, structural genomics, PSI, protein structure initiative; 2.11A {Methanosarcina mazei} SCOP: d.309.1.1
Probab=28.08 E-value=50 Score=22.88 Aligned_cols=33 Identities=18% Similarity=0.064 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCC-----C-----CCccceeeeeC
Q 034969 41 GRDIRLAIECVLSGQPVSSNQ-----K-----PSVGCSIKWHP 73 (77)
Q Consensus 41 ~~yL~~AI~allaGk~v~~~~-----T-----~siGCsIKwk~ 73 (77)
..+.++||++-+.+++.+.+. . ...||-+.|+.
T Consensus 11 v~lAR~aI~~~l~~~~~~~p~~~~~~~~~~l~~~~g~FVTl~~ 53 (207)
T 1zq7_A 11 VKLARKTIEIFLSKGKSPRPDASGVELSPVFEEYRGVFVTLTE 53 (207)
T ss_dssp HHHHHHHHHHHHHHSCCCC---CCCCCCGGGGSBCCEEEEEEE
T ss_pred HHHHHHHHHHHHccCCCCCccccccCCChhhcCcccEEEEEEE
Confidence 346788999888776655442 2 37899999973
No 67
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=27.85 E-value=11 Score=27.91 Aligned_cols=32 Identities=13% Similarity=0.007 Sum_probs=21.7
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~a 50 (77)
+|.|.|.||.||.-...+..+.-.+++++|.+
T Consensus 425 dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~ 456 (541)
T 1v25_A 425 EGYVEIKDRLKDLIKSGGEWISSVDLENALMG 456 (541)
T ss_dssp TCCEEEEEESSCEEEETTEEEEHHHHHCC---
T ss_pred CceEEEeecccceeeeCCEEECHHHHHHHHHh
Confidence 36799999999986555556666677766654
No 68
>1i9w_A Fusion protein E1; envelope glycoprotein, membrane fusion, viral protein; 3.00A {Semliki forest virus} SCOP: b.1.18.4 f.10.1.1 PDB: 2ala_A 1rer_A
Probab=27.13 E-value=28 Score=26.67 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=22.8
Q ss_pred HHHHHHcCCCCCCCCCCCccceeeeeC
Q 034969 47 AIECVLSGQPVSSNQKPSVGCSIKWHP 73 (77)
Q Consensus 47 AI~allaGk~v~~~~T~siGCsIKwk~ 73 (77)
-.+--++.+..+.+.|.|.||.|+-.+
T Consensus 239 Gf~~W~~~~g~~L~~tAPFGC~I~~nP 265 (390)
T 1i9w_A 239 GFKYWLKEKGTALNTKAPFGCQIKTNP 265 (390)
T ss_pred HHHHHHhcCCCccccCCCcceEEecCc
Confidence 456678889999999999999999754
No 69
>3j0f_E E1 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1ld4_M 1z8y_I
Probab=26.47 E-value=29 Score=26.98 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=22.8
Q ss_pred HHHHHHcCCCCCCCCCCCccceeeeeC
Q 034969 47 AIECVLSGQPVSSNQKPSVGCSIKWHP 73 (77)
Q Consensus 47 AI~allaGk~v~~~~T~siGCsIKwk~ 73 (77)
-.+--++.+..+.+.|.|.||.|+-.+
T Consensus 239 Gf~~W~k~~g~~L~~tAPFGC~I~~nP 265 (439)
T 3j0f_E 239 GFEMWKNNSGRPLQETAPFGCKIAVNP 265 (439)
T ss_pred HHHHHHhcCCCccccCCCcccEEecCc
Confidence 456678889999999999999999754
No 70
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=26.42 E-value=1e+02 Score=18.03 Aligned_cols=18 Identities=11% Similarity=0.045 Sum_probs=14.5
Q ss_pred cHHHHHHHHHHHHcCCCC
Q 034969 40 TGRDIRLAIECVLSGQPV 57 (77)
Q Consensus 40 t~~yL~~AI~allaGk~v 57 (77)
+...|+++|+.+++.+..
T Consensus 139 ~~~~l~~~i~~ll~~~~~ 156 (158)
T 3eyt_A 139 SELLLGAEIATLLGEAAP 156 (158)
T ss_dssp CHHHHHHHHHHHHTSCCC
T ss_pred CHHHHHHHHHHHhccCCC
Confidence 466899999999987654
No 71
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=26.30 E-value=52 Score=18.41 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=17.6
Q ss_pred CCCcHHHHHHHHHHHHcCCCCCCCCC
Q 034969 37 LPVTGRDIRLAIECVLSGQPVSSNQK 62 (77)
Q Consensus 37 ~~vt~~yL~~AI~allaGk~v~~~~T 62 (77)
.+.+...|..+|+.++.+.......+
T Consensus 106 kP~~~~~l~~~i~~~~~~~~~~~~~~ 131 (132)
T 2rdm_A 106 KPFTSAQLITAVSQLLNAREGHHHHH 131 (132)
T ss_dssp SSCCHHHHHHHHHHHHHTTC------
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCCCC
Confidence 35678899999999999988877654
No 72
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=25.98 E-value=33 Score=24.90 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=8.5
Q ss_pred CeEEEEeeec--cCCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQF--DDSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrI--DD~~~~~~~~vt~~yL~~AI~a 50 (77)
++.|.|.||. ||.-..++..+.-.+++++|.+
T Consensus 388 dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~ 421 (509)
T 3ivr_A 388 DGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQ 421 (509)
T ss_dssp TSCEEEEEEC------------------------
T ss_pred CceEEEeCCCCcceeEEECCEEECHHHHHHHHHh
Confidence 3669999999 5544434444444555555543
No 73
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=25.66 E-value=44 Score=26.41 Aligned_cols=34 Identities=9% Similarity=-0.037 Sum_probs=28.9
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHH
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 52 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~all 52 (77)
..++++.||.|+.-...++..+...+++||.+..
T Consensus 415 ~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a~ 448 (581)
T 4eql_A 415 APQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAK 448 (581)
T ss_dssp EEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC-
T ss_pred CcEEEEEEecCCEEEeeeeECCHHHHHHHHHHHH
Confidence 4579999999998777788999999999999765
No 74
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=25.00 E-value=34 Score=25.03 Aligned_cols=32 Identities=16% Similarity=0.013 Sum_probs=22.0
Q ss_pred CeEEEEeeecc-CCCCCCCCCCcHHHHHHHHHH
Q 034969 19 PFQLVYHGQFD-DSRPSNNLPVTGRDIRLAIEC 50 (77)
Q Consensus 19 ~~~L~Y~GrID-D~~~~~~~~vt~~yL~~AI~a 50 (77)
++.|.|.||.| |.-...+..+.-.+++++|.+
T Consensus 395 dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~ 427 (505)
T 3nyq_A 395 DGYVRIVGRKATDLIKSGGYKIGAGEIENALLE 427 (505)
T ss_dssp TSCEEEEEESSCCCEEETTEEECHHHHHHHHTT
T ss_pred CccEEEeCCccCceEEeCCEEECHHHHHHHHHH
Confidence 36799999985 654445555667777777654
No 75
>2yew_B E1 envelope glycoprotein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus}
Probab=24.44 E-value=25 Score=27.27 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=22.5
Q ss_pred HHHHHHcCCCCCCCCCCCccceeeeeC
Q 034969 47 AIECVLSGQPVSSNQKPSVGCSIKWHP 73 (77)
Q Consensus 47 AI~allaGk~v~~~~T~siGCsIKwk~ 73 (77)
-.+--++.+..+.+.|.|.||.|+-.+
T Consensus 234 Gf~~W~k~~g~~L~~tAPFGC~I~~NP 260 (427)
T 2yew_B 234 GFSYWKKEKGVPLNRNAPFGCIIKVNP 260 (427)
T ss_dssp HHHHHTTTCCEESTTCSSSCCEEETTT
T ss_pred HHHHHHhcCCCccccCCCcccEEecCc
Confidence 356678899999999999999998643
No 76
>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1
Probab=24.40 E-value=1.2e+02 Score=19.22 Aligned_cols=24 Identities=13% Similarity=0.016 Sum_probs=18.6
Q ss_pred CCCcHHHHHHHHHHHHcCCCCCCC
Q 034969 37 LPVTGRDIRLAIECVLSGQPVSSN 60 (77)
Q Consensus 37 ~~vt~~yL~~AI~allaGk~v~~~ 60 (77)
+..|..+|+.+-+.++.+-+-.++
T Consensus 39 P~PT~~eL~~wwee~q~np~yepP 62 (110)
T 2hg7_A 39 PLPTQAELETWWEELQKNPPYEPP 62 (110)
T ss_dssp CCCCHHHHHHHHHHHHHSCCCC--
T ss_pred CCCCHHHHHHHHHHHHhCCCCCCc
Confidence 345999999999999998776655
No 77
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=24.17 E-value=1.1e+02 Score=17.87 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=13.3
Q ss_pred cHHHHHHHHHHHHcCCCCCCCC
Q 034969 40 TGRDIRLAIECVLSGQPVSSNQ 61 (77)
Q Consensus 40 t~~yL~~AI~allaGk~v~~~~ 61 (77)
+...|++.|+.++++...+.+.
T Consensus 125 ~~~~l~~~l~~ll~~~~~~~~~ 146 (151)
T 2f9s_A 125 TESMIHDYMNLIKPGETSGLEH 146 (151)
T ss_dssp CHHHHHHHHHHHSCC-------
T ss_pred CHHHHHHHHHHHHhhhhccccc
Confidence 4679999999999987766543
No 78
>2dyq_A Amyloid beta A4 precursor protein-binding family 3; phosphotyrosine-interaction domain (PTB/PID alzheimer'S disease, structural genomics, NPPSFA; 3.10A {Homo sapiens}
Probab=24.11 E-value=1.1e+02 Score=20.10 Aligned_cols=35 Identities=11% Similarity=0.142 Sum_probs=26.5
Q ss_pred CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCC
Q 034969 19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVS 58 (77)
Q Consensus 19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~ 58 (77)
.+.+.|-|.+- .+.+....=|.+||+.|+......
T Consensus 17 ~f~~kyLGsv~-----V~~~~G~dVln~Ai~~l~~~~~~~ 51 (144)
T 2dyq_A 17 KYEALYMGTLP-----VTKAMGMDVLNEAIGTLTARGDRN 51 (144)
T ss_dssp CCEEEEEEEEE-----ESSSCCHHHHHHHHHHHHCCCSSC
T ss_pred EEEEEEeccEE-----ecCccCHHHHHHHHHHHHhcCCcc
Confidence 58999999972 333556777999999999865543
No 79
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=24.01 E-value=40 Score=19.36 Aligned_cols=27 Identities=11% Similarity=0.094 Sum_probs=15.0
Q ss_pred CCcHHHHHHHHHHHHcCCCCCCCCCCC
Q 034969 38 PVTGRDIRLAIECVLSGQPVSSNQKPS 64 (77)
Q Consensus 38 ~vt~~yL~~AI~allaGk~v~~~~T~s 64 (77)
+.+...|..+|+.++.+.....+..++
T Consensus 111 P~~~~~l~~~i~~~~~~~~~~~~~~~~ 137 (140)
T 3lua_A 111 PYPTKRLENSVRSVLKICQRFREGHHH 137 (140)
T ss_dssp SCCTTHHHHHHHHHHCC----------
T ss_pred CCCHHHHHHHHHHHHHhccccCCCCCC
Confidence 456789999999999998877766554
No 80
>1vaj_A Hypothetical protein PH0010; alpha + beta fold, structural genomics, unknown function; 1.82A {Pyrococcus horikoshii} SCOP: d.309.1.1
Probab=23.65 E-value=71 Score=22.15 Aligned_cols=32 Identities=22% Similarity=0.106 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCCCC--CCC-----CCCccceeeee
Q 034969 41 GRDIRLAIECVLSGQPVS--SNQ-----KPSVGCSIKWH 72 (77)
Q Consensus 41 ~~yL~~AI~allaGk~v~--~~~-----T~siGCsIKwk 72 (77)
..+.++||++-|.+++.+ ++. ....||-|.|+
T Consensus 14 v~lAR~aI~~~L~~~~~~~~p~~~~~~l~~~~g~FVTl~ 52 (214)
T 1vaj_A 14 VRLARRAIEEYLKTGKEIEPPKDTPPELWEKMGVFVTLN 52 (214)
T ss_dssp HHHHHHHHHHHHHHSCCCCCCTTCCGGGGSBCEEEEEEE
T ss_pred HHHHHHHHHHHHccCCCCCCCcccChhhcCcccEEEEEE
Confidence 346688999888766653 222 23789999998
No 81
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=22.85 E-value=82 Score=18.00 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=10.8
Q ss_pred cHHHHHHHHHHHHcC
Q 034969 40 TGRDIRLAIECVLSG 54 (77)
Q Consensus 40 t~~yL~~AI~allaG 54 (77)
+...|++.|+.+++.
T Consensus 133 ~~~~l~~~l~~ll~~ 147 (148)
T 3fkf_A 133 QGEALTGKLKELLKT 147 (148)
T ss_dssp CHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHcc
Confidence 567899999988764
No 82
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=22.36 E-value=1.3e+02 Score=17.63 Aligned_cols=20 Identities=10% Similarity=0.019 Sum_probs=13.5
Q ss_pred cHHHHHHHHHHHHcCCCCCC
Q 034969 40 TGRDIRLAIECVLSGQPVSS 59 (77)
Q Consensus 40 t~~yL~~AI~allaGk~v~~ 59 (77)
+...|+++|+.++++++-+.
T Consensus 127 ~~~~l~~~l~~l~~~~~~~~ 146 (151)
T 3raz_A 127 NEKSLTDAVKLAHSKCREGH 146 (151)
T ss_dssp CHHHHHHHHHHHHTC-----
T ss_pred CHHHHHHHHHHHHHHhhccc
Confidence 56799999999999987543
No 83
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=22.28 E-value=1.2e+02 Score=18.05 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=10.1
Q ss_pred cHHHHHHHHHHHHcC
Q 034969 40 TGRDIRLAIECVLSG 54 (77)
Q Consensus 40 t~~yL~~AI~allaG 54 (77)
+...|++.|++++.|
T Consensus 151 ~~~~l~~~l~~l~~g 165 (165)
T 3ha9_A 151 SLGELESVIKSVQGG 165 (165)
T ss_dssp CHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHhcC
Confidence 467899999998875
No 84
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.20 E-value=29 Score=19.57 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCccc
Q 034969 40 TGRDIRLAIECVLSGQPVSSNQKPSVGC 67 (77)
Q Consensus 40 t~~yL~~AI~allaGk~v~~~~T~siGC 67 (77)
+.+.+..|++-|+.+......+.|+-|-
T Consensus 33 ~~~nve~A~e~L~~~~~~~~~~~p~~~~ 60 (63)
T 1wji_A 33 NGNNLEAALNVLLTSNKQKPVMGPPSGP 60 (63)
T ss_dssp TTSCHHHHHHHHHHHSSCCCCCSSCCCS
T ss_pred hCCCHHHHHHHHHHCCCCcccCCCCCCC
Confidence 4456889999999988877777776653
No 85
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=21.63 E-value=1.3e+02 Score=17.52 Aligned_cols=17 Identities=18% Similarity=0.143 Sum_probs=13.1
Q ss_pred cHHHHHHHHHHHHcCCC
Q 034969 40 TGRDIRLAIECVLSGQP 56 (77)
Q Consensus 40 t~~yL~~AI~allaGk~ 56 (77)
+...|++.|+.+|+.++
T Consensus 142 ~~~~l~~~i~~ll~~~~ 158 (160)
T 3lor_A 142 DDFVLGLLLGSLLSETD 158 (160)
T ss_dssp CHHHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHHHhccC
Confidence 35689999999998654
No 86
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=20.61 E-value=27 Score=23.69 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=9.4
Q ss_pred CccceeeeeCCC
Q 034969 64 SVGCSIKWHPQT 75 (77)
Q Consensus 64 siGCsIKwk~~~ 75 (77)
+-||.|+|++|.
T Consensus 124 ~~~t~I~Wk~gk 135 (193)
T 3kyp_A 124 VECTRIKWKEGK 135 (193)
T ss_dssp CCCCCCCCCSSC
T ss_pred eccceeeeecCC
Confidence 458899998764
No 87
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=20.40 E-value=71 Score=18.38 Aligned_cols=27 Identities=11% Similarity=0.368 Sum_probs=15.9
Q ss_pred CCCcHHHHHHHHHHHHcCCCCCCCCCC
Q 034969 37 LPVTGRDIRLAIECVLSGQPVSSNQKP 63 (77)
Q Consensus 37 ~~vt~~yL~~AI~allaGk~v~~~~T~ 63 (77)
.+.+...|..+|+.++.+.....+.++
T Consensus 107 KP~~~~~L~~~i~~~l~~~~~~~~~~~ 133 (136)
T 3t6k_A 107 KPFEPQELVYRVKNILARTTIETPTTP 133 (136)
T ss_dssp TTCCHHHHHHHHHHHHHC---------
T ss_pred CCCCHHHHHHHHHHHHhccCCCCCCCC
Confidence 467889999999999999887766654
No 88
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=20.36 E-value=79 Score=18.74 Aligned_cols=14 Identities=29% Similarity=0.192 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHcCC
Q 034969 42 RDIRLAIECVLSGQ 55 (77)
Q Consensus 42 ~yL~~AI~allaGk 55 (77)
..|.++|+++|+.|
T Consensus 156 ~~l~~~i~~ll~~k 169 (169)
T 2v1m_A 156 YDIEGDIMELLEKK 169 (169)
T ss_dssp GGGHHHHHHHHHCC
T ss_pred HHHHHHHHHHhccC
Confidence 46888999988754
Done!