Query 034970
Match_columns 77
No_of_seqs 100 out of 145
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 13:16:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034970.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034970hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nud_C RIN4, RPM1-interacting 99.8 1.4E-22 4.7E-27 114.1 0.4 34 3-36 2-35 (35)
2 2ys2_A Cytoplasmic tyrosine-pr 37.4 8.8 0.0003 22.1 0.4 12 62-73 21-32 (50)
3 1ac0_A Glucoamylase; hydrolase 29.7 20 0.00069 21.8 1.2 13 6-18 27-39 (108)
4 2e6i_A Tyrosine-protein kinase 28.0 15 0.0005 22.1 0.3 12 62-73 21-32 (64)
5 2lk0_A RNA-binding protein 5; 28.0 11 0.00039 19.2 -0.1 9 9-17 1-9 (32)
6 3sbu_A Hypothetical NTF2-like 22.7 23 0.00077 26.7 0.5 22 23-44 89-110 (261)
7 2k5k_A Uncharacterized protein 20.2 45 0.0015 20.5 1.5 9 10-18 49-57 (70)
8 2lul_A Tyrosine-protein kinase 18.5 52 0.0018 21.2 1.6 12 62-73 136-147 (164)
9 4dkx_A RAS-related protein RAB 16.2 43 0.0015 22.4 0.7 11 61-71 200-210 (216)
10 2z0b_A GDE5, KIAA1434, putativ 15.7 38 0.0013 21.7 0.3 12 7-18 30-41 (131)
No 1
>2nud_C RIN4, RPM1-interacting protein 4; AVRB RIN4 high-affinity toxin/protein binding complex; 2.30A {Pseudomonas syringae PV}
Probab=99.84 E-value=1.4e-22 Score=114.10 Aligned_cols=34 Identities=56% Similarity=1.102 Sum_probs=22.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceehhhHHHHhh
Q 034970 3 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEK 36 (77)
Q Consensus 3 ~~~~~vPKFG~WD~~~p~sa~~yTviF~kar~~K 36 (77)
+++++|||||+||++||+++++|||||+|||++|
T Consensus 2 ~~~~~vPkFG~WD~~n~~s~~~yT~iF~k~re~K 35 (35)
T 2nud_C 2 EKVTVVPKFGDWDENNPSSADGYTHIFNKVREER 35 (35)
T ss_dssp -------CCSGGGTTCTTCCCSSCEEEECC----
T ss_pred CCCCCCCCCCcccCCCCCCCCCEeehhhhhhhcC
Confidence 5789999999999999999999999999999997
No 2
>2ys2_A Cytoplasmic tyrosine-protein kinase BMX; bone marrow tyrosine kinase gene in chromosome X protein, epithelial and endothelial tyrosine kinase, ETK; NMR {Homo sapiens}
Probab=37.39 E-value=8.8 Score=22.06 Aligned_cols=12 Identities=42% Similarity=0.791 Sum_probs=9.2
Q ss_pred CCCeeeeeecCC
Q 034970 62 QPRKWFCCIQSP 73 (77)
Q Consensus 62 ~~kKwfCC~~~~ 73 (77)
...+|.||.+..
T Consensus 21 ~~g~W~CC~q~~ 32 (50)
T 2ys2_A 21 VDGKFLCCQQSC 32 (50)
T ss_dssp ETTEESSSCCSS
T ss_pred cCCeECCCCCCC
Confidence 368999998643
No 3
>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A
Probab=29.74 E-value=20 Score=21.83 Aligned_cols=13 Identities=23% Similarity=0.971 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCCC
Q 034970 6 RPLPKFGEWDVND 18 (77)
Q Consensus 6 ~~vPKFG~WD~~~ 18 (77)
..+|.||+||...
T Consensus 27 Gs~~~LG~W~~~~ 39 (108)
T 1ac0_A 27 GSISQLGDWETSD 39 (108)
T ss_dssp CSSSTTCSSSGGG
T ss_pred eCcHHHCCCCHHH
Confidence 3579999999753
No 4
>2e6i_A Tyrosine-protein kinase ITK/TSK; BTK, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.03 E-value=15 Score=22.14 Aligned_cols=12 Identities=42% Similarity=0.911 Sum_probs=9.2
Q ss_pred CCCeeeeeecCC
Q 034970 62 QPRKWFCCIQSP 73 (77)
Q Consensus 62 ~~kKwfCC~~~~ 73 (77)
...+|.||.+..
T Consensus 21 ~~GkW~CC~q~~ 32 (64)
T 2e6i_A 21 MDGKWRCCSQLE 32 (64)
T ss_dssp CSSSBSSSCCSC
T ss_pred eCCeECCCCCCC
Confidence 468999998643
No 5
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=28.01 E-value=11 Score=19.25 Aligned_cols=9 Identities=44% Similarity=1.007 Sum_probs=6.2
Q ss_pred CCCCCCCCC
Q 034970 9 PKFGEWDVN 17 (77)
Q Consensus 9 PKFG~WD~~ 17 (77)
||-|||.=.
T Consensus 1 pk~gDW~C~ 9 (32)
T 2lk0_A 1 XKFEDWLCN 9 (32)
T ss_dssp -CCSEEECT
T ss_pred CCCCCCCcC
Confidence 778888764
No 6
>3sbu_A Hypothetical NTF2-like protein; cystatin-like, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; HET: MLY; 2.15A {Bacteroides fragilis}
Probab=22.66 E-value=23 Score=26.70 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=18.0
Q ss_pred CCceehhhHHHHhhhcCCCCCC
Q 034970 23 EGFTVIFNKARDEKKTGGKPDS 44 (77)
Q Consensus 23 ~~yTviF~kar~~Kk~~~~~~~ 44 (77)
.=||+||++..+++-...+.+.
T Consensus 89 ~yYTliFD~e~qM~~~KdT~l~ 110 (261)
T 3sbu_A 89 SYYTLLFDREEDMDLVGDTSLT 110 (261)
T ss_dssp SEEEEEESSGGGGGGGGCTTCS
T ss_pred ceEEEEEcCHHHhhhhcCCccc
Confidence 4589999999999988776653
No 7
>2k5k_A Uncharacterized protein RHR2; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Rhodobacter sphaeroides 2}
Probab=20.20 E-value=45 Score=20.55 Aligned_cols=9 Identities=33% Similarity=1.298 Sum_probs=7.8
Q ss_pred CCCCCCCCC
Q 034970 10 KFGEWDVND 18 (77)
Q Consensus 10 KFG~WD~~~ 18 (77)
.||||+.+.
T Consensus 49 RYGDWE~kG 57 (70)
T 2k5k_A 49 RFGDWEKKG 57 (70)
T ss_dssp SCCCCCCCS
T ss_pred ccccchhcc
Confidence 699999985
No 8
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=18.49 E-value=52 Score=21.15 Aligned_cols=12 Identities=25% Similarity=0.672 Sum_probs=9.1
Q ss_pred CCCeeeeeecCC
Q 034970 62 QPRKWFCCIQSP 73 (77)
Q Consensus 62 ~~kKwfCC~~~~ 73 (77)
...+|.||.++.
T Consensus 136 ~~~~w~CC~~~~ 147 (164)
T 2lul_A 136 TDGSYQCCRQTE 147 (164)
T ss_dssp CTTCCCSSSCTT
T ss_pred cCCeEeeCCCCC
Confidence 357899998654
No 9
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=16.21 E-value=43 Score=22.43 Aligned_cols=11 Identities=18% Similarity=0.519 Sum_probs=0.0
Q ss_pred CCCCeeeeeec
Q 034970 61 PQPRKWFCCIQ 71 (77)
Q Consensus 61 ~~~kKwfCC~~ 71 (77)
+..+++|||+.
T Consensus 200 ~~~~~~C~Cl~ 210 (216)
T 4dkx_A 200 PVSEGGCSCLE 210 (216)
T ss_dssp -----------
T ss_pred CCCCCCCceeC
Confidence 44567777863
No 10
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}
Probab=15.68 E-value=38 Score=21.73 Aligned_cols=12 Identities=17% Similarity=0.689 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCC
Q 034970 7 PLPKFGEWDVND 18 (77)
Q Consensus 7 ~vPKFG~WD~~~ 18 (77)
.+|.||+||...
T Consensus 30 s~~~LG~W~p~~ 41 (131)
T 2z0b_A 30 SCDALGNWNPQN 41 (131)
T ss_dssp SSGGGTTTCGGG
T ss_pred CCCcCCCCCccc
Confidence 478999999853
Done!