Query 034970
Match_columns 77
No_of_seqs 100 out of 145
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 13:17:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034970.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034970hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g26a_ g.3.16.1 (A:) N-termin 33.7 7.7 0.00056 19.4 1.1 9 62-70 20-28 (31)
2 d2ox7a1 b.172.1.1 (A:3-145) Hy 33.5 3.4 0.00025 24.8 -0.4 11 8-18 2-12 (143)
3 d2p84a1 b.172.1.1 (A:3-135) Or 29.3 4.4 0.00032 24.8 -0.4 10 8-17 2-11 (133)
4 d1vema1 b.3.1.1 (A:418-516) be 29.0 7.4 0.00054 22.5 0.6 12 7-18 25-36 (99)
5 d1kula_ b.3.1.1 (A:) Glucoamyl 26.1 10 0.00076 21.8 0.9 13 6-18 27-39 (108)
6 d3bmva2 b.3.1.1 (A:579-683) Cy 24.1 7.1 0.00052 22.7 -0.1 12 7-18 28-39 (105)
7 d1mkca_ g.5.1.2 (A:) Midkine, 21.6 15 0.0011 19.5 0.9 13 10-22 4-16 (43)
8 d1qhoa2 b.3.1.1 (A:577-686) Cy 21.5 12 0.00084 21.8 0.5 12 7-18 29-40 (110)
9 d1cyga2 b.3.1.1 (A:575-680) Cy 18.8 11 0.00077 21.8 -0.2 12 7-18 28-39 (106)
10 d1ufia_ a.30.4.1 (A:) Dimerisa 12.9 15 0.0011 19.7 -0.6 8 6-13 2-9 (48)
No 1
>d1g26a_ g.3.16.1 (A:) N-terminal domain of granulin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.66 E-value=7.7 Score=19.43 Aligned_cols=9 Identities=33% Similarity=1.043 Sum_probs=7.3
Q ss_pred CCCeeeeee
Q 034970 62 QPRKWFCCI 70 (77)
Q Consensus 62 ~~kKwfCC~ 70 (77)
++-+|+||-
T Consensus 20 ~sGaWgCCP 28 (31)
T d1g26a_ 20 PSGAWGCCP 28 (31)
T ss_dssp TTSCEEEEE
T ss_pred cCCceeecc
Confidence 468999994
No 2
>d2ox7a1 b.172.1.1 (A:3-145) Hypothetical protein EF1440 {Enterococcus faecalis [TaxId: 1351]}
Probab=33.51 E-value=3.4 Score=24.77 Aligned_cols=11 Identities=45% Similarity=1.205 Sum_probs=9.3
Q ss_pred CCCCCCCCCCC
Q 034970 8 LPKFGEWDVND 18 (77)
Q Consensus 8 vPKFG~WD~~~ 18 (77)
+|||-.||...
T Consensus 2 ipKFRaWdk~~ 12 (143)
T d2ox7a1 2 IPKFRAWDTYE 12 (143)
T ss_dssp CCCEEEEETTT
T ss_pred CcEEEEEECCC
Confidence 69999999763
No 3
>d2p84a1 b.172.1.1 (A:3-135) Orf041 product {Staphylococcus phage 37 [TaxId: 320840]}
Probab=29.30 E-value=4.4 Score=24.84 Aligned_cols=10 Identities=50% Similarity=1.012 Sum_probs=8.7
Q ss_pred CCCCCCCCCC
Q 034970 8 LPKFGEWDVN 17 (77)
Q Consensus 8 vPKFG~WD~~ 17 (77)
+|||-.||..
T Consensus 2 iPKFRaWDk~ 11 (133)
T d2p84a1 2 IPKFREFDRE 11 (133)
T ss_dssp CCCEEEECHH
T ss_pred CCeEEEEECC
Confidence 7999999964
No 4
>d1vema1 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus [TaxId: 1396]}
Probab=29.00 E-value=7.4 Score=22.50 Aligned_cols=12 Identities=25% Similarity=0.772 Sum_probs=10.0
Q ss_pred CCCCCCCCCCCC
Q 034970 7 PLPKFGEWDVND 18 (77)
Q Consensus 7 ~vPKFG~WD~~~ 18 (77)
..|.+|+||.++
T Consensus 25 s~~eLG~W~~~k 36 (99)
T d1vema1 25 NRAELGSWDTKQ 36 (99)
T ss_dssp SSGGGTTTCSSS
T ss_pred CcHHHCCCChhh
Confidence 479999999765
No 5
>d1kula_ b.3.1.1 (A:) Glucoamylase, granular starch-binding domain {Aspergillus niger [TaxId: 5061]}
Probab=26.15 E-value=10 Score=21.83 Aligned_cols=13 Identities=23% Similarity=0.971 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCCC
Q 034970 6 RPLPKFGEWDVND 18 (77)
Q Consensus 6 ~~vPKFG~WD~~~ 18 (77)
...|.+|+||.+.
T Consensus 27 Gs~~~LG~W~~~~ 39 (108)
T d1kula_ 27 GSISQLGDWETSD 39 (108)
T ss_dssp CSSGGGTTTCTTT
T ss_pred eChHHhCCCCHHH
Confidence 3579999999764
No 6
>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]}
Probab=24.13 E-value=7.1 Score=22.67 Aligned_cols=12 Identities=25% Similarity=0.894 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCC
Q 034970 7 PLPKFGEWDVND 18 (77)
Q Consensus 7 ~vPKFG~WD~~~ 18 (77)
..|.+|+||..+
T Consensus 28 s~~~LG~W~~~~ 39 (105)
T d3bmva2 28 NVAELGNWDTSK 39 (105)
T ss_dssp SSGGGTTTCGGG
T ss_pred CcHHHCCCCHHH
Confidence 479999999753
No 7
>d1mkca_ g.5.1.2 (A:) Midkine, a heparin-binding growth factor, C-terminal domain {Synthetic}
Probab=21.63 E-value=15 Score=19.50 Aligned_cols=13 Identities=31% Similarity=0.731 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCCC
Q 034970 10 KFGEWDVNDPASA 22 (77)
Q Consensus 10 KFG~WD~~~p~sa 22 (77)
||+.|-+=|++.+
T Consensus 4 kF~~WG~CD~~Tg 16 (43)
T d1mkca_ 4 KFENWGACDGGTG 16 (43)
T ss_dssp EECCCCSSCSSSS
T ss_pred cccccccccccCC
Confidence 7999998876543
No 8
>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}
Probab=21.50 E-value=12 Score=21.76 Aligned_cols=12 Identities=25% Similarity=1.030 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCC
Q 034970 7 PLPKFGEWDVND 18 (77)
Q Consensus 7 ~vPKFG~WD~~~ 18 (77)
..|.+|+||..+
T Consensus 29 ~~~~LG~W~~~~ 40 (110)
T d1qhoa2 29 NIPELGNWSTDT 40 (110)
T ss_dssp SSGGGTTTCCCC
T ss_pred CcHHHCCCChhh
Confidence 479999999864
No 9
>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=18.81 E-value=11 Score=21.80 Aligned_cols=12 Identities=25% Similarity=0.800 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCC
Q 034970 7 PLPKFGEWDVND 18 (77)
Q Consensus 7 ~vPKFG~WD~~~ 18 (77)
..|.+|+||.++
T Consensus 28 s~~~LG~W~~~~ 39 (106)
T d1cyga2 28 NVYELGNWDTSK 39 (106)
T ss_dssp SSGGGBTTCGGG
T ss_pred CHHHHCCCCHHH
Confidence 469999999764
No 10
>d1ufia_ a.30.4.1 (A:) Dimerisation domain of CENP-B {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.90 E-value=15 Score=19.72 Aligned_cols=8 Identities=63% Similarity=1.356 Sum_probs=5.9
Q ss_pred CCCCCCCC
Q 034970 6 RPLPKFGE 13 (77)
Q Consensus 6 ~~vPKFG~ 13 (77)
.+||-||+
T Consensus 2 ~pvpsfge 9 (48)
T d1ufia_ 2 MPVPSFGE 9 (48)
T ss_dssp CCCCCHHH
T ss_pred CCCccHHH
Confidence 46888885
Done!