Your job contains 1 sequence.
>034973
MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRVVSHHPPIPETPSLKDVEPSSVNEVTKV
KKDTEERKQNVGRKNRN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 034973
(77 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2096329 - symbol:ERCC1 species:3702 "Arabidops... 191 1.9e-14 1
UNIPROTKB|Q1LZ75 - symbol:ERCC1 "DNA excision repair prot... 93 0.00052 1
UNIPROTKB|B3KRR0 - symbol:ERCC1 "cDNA FLJ34720 fis, clone... 90 0.00066 1
UNIPROTKB|Q9QYP5 - symbol:ERCC1 "ERCC1 protein" species:1... 91 0.00085 1
>TAIR|locus:2096329 [details] [associations]
symbol:ERCC1 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0010332 "response to gamma radiation"
evidence=IMP] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IMP] [GO:0006294
"nucleotide-excision repair, preincision complex assembly"
evidence=IMP] [GO:0017108 "5'-flap endonuclease activity"
evidence=IMP] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=RCA] [GO:0010213 "non-photoreactive DNA repair"
evidence=IMP] [GO:0010224 "response to UV-B" evidence=IMP]
InterPro:IPR003583 InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585
SMART:SM00278 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003684 GO:GO:0010332 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0000724 GO:GO:0010224 EMBL:AC009177 GO:GO:0017108
InterPro:IPR010994 SUPFAM:SSF47781 EMBL:AF276082 EMBL:AY050335
EMBL:AY116935 EMBL:AY088915 IPI:IPI00546398 RefSeq:NP_187172.1
UniGene:At.15981 ProteinModelPortal:Q9MA98 SMR:Q9MA98 IntAct:Q9MA98
STRING:Q9MA98 PaxDb:Q9MA98 PRIDE:Q9MA98 EnsemblPlants:AT3G05210.1
GeneID:819685 KEGG:ath:AT3G05210 GeneFarm:4450 TAIR:At3g05210
eggNOG:COG5241 HOGENOM:HOG000037440 InParanoid:Q9MA98 KO:K10849
OMA:CHVDVED PhylomeDB:Q9MA98 ProtClustDB:CLSN2684472
Genevestigator:Q9MA98 GermOnline:AT3G05210 GO:GO:0010213
GO:GO:0006294 TIGRFAMs:TIGR00597 Uniprot:Q9MA98
Length = 410
Score = 191 (72.3 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 43/75 (57%), Positives = 49/75 (65%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRVVSHHP-----PIPETPSLKDVEPSS-V 54
+DASMEDLA CPGI ERKVK LYDTFHEPFKR S +P PIPE P KDV V
Sbjct: 289 IDASMEDLARCPGIGERKVKRLYDTFHEPFKRATSSYPSVVEPPIPEAPVEKDVNSEEPV 348
Query: 55 NEVTKVKKDTEERKQ 69
E +D+ +RK+
Sbjct: 349 EEDEDFVEDSRKRKK 363
>UNIPROTKB|Q1LZ75 [details] [associations]
symbol:ERCC1 "DNA excision repair protein ERCC-1"
species:9913 "Bos taurus" [GO:0006295 "nucleotide-excision repair,
DNA incision, 3'-to lesion" evidence=ISS] [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0008022 "protein C-terminus binding"
evidence=ISS] [GO:0006979 "response to oxidative stress"
evidence=ISS] [GO:0006312 "mitotic recombination" evidence=ISS]
[GO:0006296 "nucleotide-excision repair, DNA incision, 5'-to
lesion" evidence=ISS] [GO:0003697 "single-stranded DNA binding"
evidence=ISS] [GO:0000109 "nucleotide-excision repair complex"
evidence=ISS] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=ISS] [GO:0000784 "nuclear
chromosome, telomeric region" evidence=ISS] [GO:0043566
"structure-specific DNA binding" evidence=ISS] [GO:0032205
"negative regulation of telomere maintenance" evidence=ISS]
[GO:0051276 "chromosome organization" evidence=IEA] [GO:0048477
"oogenesis" evidence=IEA] [GO:0045190 "isotype switching"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0035166 "post-embryonic hemopoiesis"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0010259 "multicellular organismal aging"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009650 "UV protection" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0006949
"syncytium formation" evidence=IEA] [GO:0006302 "double-strand
break repair" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0001302 "replicative cell aging" evidence=IEA] [GO:0000720
"pyrimidine dimer repair by nucleotide-excision repair"
evidence=IEA] InterPro:IPR000445 InterPro:IPR003583
InterPro:IPR004579 Pfam:PF00633 Pfam:PF03834 ProDom:PD013585
SMART:SM00278 GO:GO:0005737 GO:GO:0043066 GO:GO:0006979
GO:GO:0003684 GO:GO:0008283 GO:GO:0048477 GO:GO:0007283
GO:GO:0001302 GO:GO:0008584 GO:GO:0003697 GO:GO:0007281
GO:GO:0006302 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0035264
GO:GO:0008022 GO:GO:0045190 GO:GO:0010165 GO:GO:0051276
GO:GO:0010259 GO:GO:0000784 GO:GO:0006312 GO:GO:0009650
GO:GO:0006949 GO:GO:0000014 InterPro:IPR010994 SUPFAM:SSF47781
GO:GO:0000109 eggNOG:COG5241 HOGENOM:HOG000037440 KO:K10849
TIGRFAMs:TIGR00597 EMBL:BC116163 IPI:IPI00717427
RefSeq:NP_001069853.1 UniGene:Bt.6079 ProteinModelPortal:Q1LZ75
SMR:Q1LZ75 STRING:Q1LZ75 PRIDE:Q1LZ75 Ensembl:ENSBTAT00000023078
GeneID:615637 KEGG:bta:615637 CTD:2067 GeneTree:ENSGT00390000011275
HOVERGEN:HBG051497 InParanoid:Q1LZ75 OMA:HPDYIHQ OrthoDB:EOG4R23VJ
NextBio:20899708 GO:GO:0032205 GO:GO:0006295 GO:GO:0006296
GO:GO:0035166 GO:GO:0000720 Uniprot:Q1LZ75
Length = 294
Score = 93 (37.8 bits), Expect = 0.00052, P = 0.00052
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
AS EDL+ CPG+ +K + L+D FHEPF +V
Sbjct: 262 ASREDLSLCPGLGPQKARRLFDVFHEPFLKV 292
>UNIPROTKB|B3KRR0 [details] [associations]
symbol:ERCC1 "cDNA FLJ34720 fis, clone MESAN2005724, highly
similar to DNA EXCISION REPAIR PROTEIN ERCC-1" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000445 InterPro:IPR003583
InterPro:IPR004579 Pfam:PF00633 Pfam:PF03834 ProDom:PD013585
SMART:SM00278 GO:GO:0005634 GO:GO:0005737 GO:GO:0003684
GO:GO:0006281 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0004519
InterPro:IPR010994 SUPFAM:SSF47781 HOGENOM:HOG000037440
TIGRFAMs:TIGR00597 HOVERGEN:HBG051497 EMBL:AC092309 EMBL:AC138128
EMBL:AC138534 EMBL:AC139353 UniGene:Hs.435981 HGNC:HGNC:3433
ChiTaRS:ERCC1 EMBL:AK092039 IPI:IPI00640338 SMR:B3KRR0
STRING:B3KRR0 Ensembl:ENST00000423698 UCSC:uc002pbu.2
Uniprot:B3KRR0
Length = 225
Score = 90 (36.7 bits), Expect = 0.00066, P = 0.00066
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 194 ASREDLALCPGLGPQKARRLFDVLHEPFLKV 224
>UNIPROTKB|Q9QYP5 [details] [associations]
symbol:ERCC1 "ERCC1 protein" species:10029 "Cricetulus
griseus" [GO:0000109 "nucleotide-excision repair complex"
evidence=ISS] [GO:0000784 "nuclear chromosome, telomeric region"
evidence=ISS] [GO:0003684 "damaged DNA binding" evidence=ISS]
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=ISS] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=ISS] [GO:0006312 "mitotic
recombination" evidence=ISS] [GO:0006979 "response to oxidative
stress" evidence=ISS] [GO:0008022 "protein C-terminus binding"
evidence=ISS] [GO:0032205 "negative regulation of telomere
maintenance" evidence=ISS] [GO:0000014 "single-stranded DNA
specific endodeoxyribonuclease activity" evidence=ISS] [GO:0043566
"structure-specific DNA binding" evidence=ISS] InterPro:IPR000445
InterPro:IPR003583 InterPro:IPR004579 Pfam:PF00633 Pfam:PF03834
ProDom:PD013585 SMART:SM00278 GO:GO:0006979 GO:GO:0003684
GO:GO:0003697 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0008022
GO:GO:0004519 GO:GO:0000784 GO:GO:0006312 InterPro:IPR010994
SUPFAM:SSF47781 GO:GO:0000109 TIGRFAMs:TIGR00597 CTD:2067
HOVERGEN:HBG051497 GO:GO:0032205 GO:GO:0006295 GO:GO:0006296
EMBL:AB008427 RefSeq:NP_001233733.1 ProteinModelPortal:Q9QYP5
SMR:Q9QYP5 GeneID:100689377 Uniprot:Q9QYP5
Length = 293
Score = 91 (37.1 bits), Expect = 0.00085, P = 0.00085
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
+ AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 259 LTASREDLALCPGLGPQKARRLFDVLHEPFLKV 291
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.131 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 77 77 0.00091 102 3 11 23 0.46 29
29 0.50 29
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 4
No. of states in DFA: 494 (53 KB)
Total size of DFA: 94 KB (2069 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 13.16u 0.10s 13.26t Elapsed: 00:00:01
Total cpu time: 13.16u 0.10s 13.26t Elapsed: 00:00:01
Start: Fri May 10 04:11:26 2013 End: Fri May 10 04:11:27 2013