BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034973
(77 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255542562|ref|XP_002512344.1| excision repair cross-complementing 1 ercc1, putative [Ricinus
communis]
gi|223548305|gb|EEF49796.1| excision repair cross-complementing 1 ercc1, putative [Ricinus
communis]
Length = 392
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/62 (77%), Positives = 52/62 (83%), Gaps = 1/62 (1%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRVVSHHPPIPETPSLKDVEPSSVNEVTKV 60
MDASMEDLA CPGI ERKVK LYDTFHEPFKRVVS HP +PET S KD EP+ V+EVT+V
Sbjct: 266 MDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSHPAVPET-SQKDSEPALVDEVTEV 324
Query: 61 KK 62
K
Sbjct: 325 GK 326
>gi|224130994|ref|XP_002328427.1| predicted protein [Populus trichocarpa]
gi|222838142|gb|EEE76507.1| predicted protein [Populus trichocarpa]
Length = 382
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/55 (80%), Positives = 47/55 (85%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRVVSHHPPIPETPSLKDVEPSSVN 55
MDASMEDLA CPGI ERKVK LYDTFHEPFKRVVS HP +P+TP KD EPSSV+
Sbjct: 260 MDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSHPVVPQTPVQKDTEPSSVD 314
>gi|449520473|ref|XP_004167258.1| PREDICTED: DNA excision repair protein ERCC-1-like [Cucumis
sativus]
Length = 412
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/56 (73%), Positives = 45/56 (80%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRVVSHHPPIPETPSLKDVEPSSVNE 56
MDASMEDLA CPGI ERKV+ LYDTFHEPFKRVVS HP +PETP+ +P S NE
Sbjct: 275 MDASMEDLARCPGIGERKVRRLYDTFHEPFKRVVSTHPAVPETPTQISTKPRSSNE 330
>gi|449441216|ref|XP_004138378.1| PREDICTED: DNA excision repair protein ERCC-1-like [Cucumis
sativus]
Length = 391
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/56 (73%), Positives = 45/56 (80%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRVVSHHPPIPETPSLKDVEPSSVNE 56
MDASMEDLA CPGI ERKV+ LYDTFHEPFKRVVS HP +PETP+ +P S NE
Sbjct: 276 MDASMEDLARCPGIGERKVRRLYDTFHEPFKRVVSTHPAVPETPTQISTKPRSSNE 331
>gi|359487720|ref|XP_002281063.2| PREDICTED: DNA excision repair protein ERCC-1-like [Vitis vinifera]
gi|296088298|emb|CBI36743.3| unnamed protein product [Vitis vinifera]
Length = 398
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 41/53 (77%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRVVSHHPPIPETPSLKDVEPSS 53
MDASMEDLA CPGI ERKVK LYDTFHEPFKRVV P +PE P + EPSS
Sbjct: 271 MDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVPSCPAVPENPVHNNAEPSS 323
>gi|15229933|ref|NP_187172.1| DNA excision repair protein ERCC-1 [Arabidopsis thaliana]
gi|55976606|sp|Q9MA98.1|ERCC1_ARATH RecName: Full=DNA excision repair protein ERCC-1; Short=AtERCC1;
Short=AtRAD10; AltName: Full=Ultraviolet hypersensitive
7
gi|6729031|gb|AAF27027.1|AC009177_17 putative nucleotide repair protein [Arabidopsis thaliana]
gi|9800490|gb|AAF99316.1|AF276082_1 ERCC1 [Arabidopsis thaliana]
gi|15215614|gb|AAK91352.1| AT3g05210/T12H1_18 [Arabidopsis thaliana]
gi|21435979|gb|AAM51569.1| AT3g05210/T12H1_18 [Arabidopsis thaliana]
gi|21618171|gb|AAM67221.1| putative nucleotide repair protein [Arabidopsis thaliana]
gi|332640684|gb|AEE74205.1| DNA excision repair protein ERCC-1 [Arabidopsis thaliana]
Length = 410
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/54 (70%), Positives = 40/54 (74%), Gaps = 5/54 (9%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRVVSHH-----PPIPETPSLKDV 49
+DASMEDLA CPGI ERKVK LYDTFHEPFKR S + PPIPE P KDV
Sbjct: 289 IDASMEDLARCPGIGERKVKRLYDTFHEPFKRATSSYPSVVEPPIPEAPVEKDV 342
>gi|326512966|dbj|BAK03390.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 388
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 50/73 (68%), Gaps = 3/73 (4%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRVVSH-HPPIPETPSLKDV--EPSSVNEV 57
MDASME+LA CPGI ERKVK L+DTFHEPFKRV + +P+TP + +PSS N+
Sbjct: 269 MDASMEELARCPGIGERKVKRLHDTFHEPFKRVTPRPNLVVPDTPDREKASGQPSSTNDG 328
Query: 58 TKVKKDTEERKQN 70
T K DT + K+
Sbjct: 329 TPEKSDTSKNKKG 341
>gi|297829042|ref|XP_002882403.1| hypothetical protein ARALYDRAFT_477808 [Arabidopsis lyrata subsp.
lyrata]
gi|297328243|gb|EFH58662.1| hypothetical protein ARALYDRAFT_477808 [Arabidopsis lyrata subsp.
lyrata]
Length = 407
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 39/54 (72%), Gaps = 5/54 (9%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRVVSHHPP-----IPETPSLKDV 49
+DASMEDLA CPGI ERKV+ LYDTFHEPFKR S +P IPE P K+V
Sbjct: 288 IDASMEDLARCPGIGERKVRRLYDTFHEPFKRATSSYPSVVEPTIPEAPVQKNV 341
>gi|357441595|ref|XP_003591075.1| DNA excision repair protein ERCC-1 [Medicago truncatula]
gi|355480123|gb|AES61326.1| DNA excision repair protein ERCC-1 [Medicago truncatula]
Length = 401
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 34/43 (79%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRVVSHHPPIPET 43
M ASMEDLA CPGI ERKVK L+DTFHEPFKRV S IPET
Sbjct: 274 MGASMEDLARCPGIGERKVKRLFDTFHEPFKRVESSRQAIPET 316
>gi|356533598|ref|XP_003535349.1| PREDICTED: DNA excision repair protein ERCC-1-like [Glycine max]
Length = 398
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 34/43 (79%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRVVSHHPPIPET 43
M ASMEDLA CPGI ERKVK L+DTFHEPFKRV S IPET
Sbjct: 271 MGASMEDLARCPGIGERKVKRLFDTFHEPFKRVESSRQAIPET 313
>gi|218184890|gb|EEC67317.1| hypothetical protein OsI_34337 [Oryza sativa Indica Group]
Length = 430
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 44/59 (74%), Gaps = 3/59 (5%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRVVSH-HPPIPETPSLKDV--EPSSVNE 56
M+ASME+LA CPGI ERKVK L+DTFHEPFKRV S + +P+TP + +PSS N+
Sbjct: 311 MNASMEELARCPGIGERKVKRLHDTFHEPFKRVSSRPNIVVPDTPDREKASGQPSSTND 369
>gi|222613143|gb|EEE51275.1| hypothetical protein OsJ_32175 [Oryza sativa Japonica Group]
Length = 430
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 44/59 (74%), Gaps = 3/59 (5%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRVVSH-HPPIPETPSLKDV--EPSSVNE 56
M+ASME+LA CPGI ERKVK L+DTFHEPFKRV S + +P+TP + +PSS N+
Sbjct: 311 MNASMEELARCPGIGERKVKRLHDTFHEPFKRVSSRPNIVVPDTPDREKASGQPSSTND 369
>gi|357147056|ref|XP_003574205.1| PREDICTED: DNA excision repair protein ERCC-1-like [Brachypodium
distachyon]
Length = 391
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 42/58 (72%), Gaps = 3/58 (5%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRVVSH-HPPIPETPSLKDV--EPSSVN 55
MD+SME+LA CPGI ERKVK +YDTFHEPFKRV + +P TP K V +PSS N
Sbjct: 268 MDSSMEELARCPGIGERKVKRIYDTFHEPFKRVTPRPNLLVPLTPDEKKVSGQPSSTN 325
>gi|115482968|ref|NP_001065077.1| Os10g0518900 [Oryza sativa Japonica Group]
gi|78708916|gb|ABB47891.1| DNA excision repair protein ERCC-1, putative, expressed [Oryza
sativa Japonica Group]
gi|113639686|dbj|BAF26991.1| Os10g0518900 [Oryza sativa Japonica Group]
gi|215697952|dbj|BAG92132.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 387
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 44/59 (74%), Gaps = 3/59 (5%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRVVSH-HPPIPETPSLKDV--EPSSVNE 56
M+ASME+LA CPGI ERKVK L+DTFHEPFKRV S + +P+TP + +PSS N+
Sbjct: 268 MNASMEELARCPGIGERKVKRLHDTFHEPFKRVSSRPNIVVPDTPDREKASGQPSSTND 326
>gi|10122039|gb|AAG13428.1|AC051634_9 putative nucleotide repair protein [Oryza sativa Japonica Group]
Length = 395
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 44/59 (74%), Gaps = 3/59 (5%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRVVSH-HPPIPETPSLKDV--EPSSVNE 56
M+ASME+LA CPGI ERKVK L+DTFHEPFKRV S + +P+TP + +PSS N+
Sbjct: 268 MNASMEELARCPGIGERKVKRLHDTFHEPFKRVSSRPNIVVPDTPDREKASGQPSSTND 326
>gi|356574927|ref|XP_003555594.1| PREDICTED: LOW QUALITY PROTEIN: DNA excision repair protein
ERCC-1-like [Glycine max]
Length = 264
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 1 MDASMEDLAGCPGIV-ERKVKCLYDTFHEPFKRVVSHHPPIPET 43
M ASMEDLA CPGIV ERKVK L+DTFHEPFK V S IPET
Sbjct: 164 MGASMEDLARCPGIVGERKVKRLFDTFHEPFKHVESSRQAIPET 207
>gi|242033937|ref|XP_002464363.1| hypothetical protein SORBIDRAFT_01g016980 [Sorghum bicolor]
gi|241918217|gb|EER91361.1| hypothetical protein SORBIDRAFT_01g016980 [Sorghum bicolor]
Length = 397
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 44/59 (74%), Gaps = 3/59 (5%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRVVSH-HPPIPETPSLKDV--EPSSVNE 56
M+ASME+LA CPGI ERKVK LYDTFHEPFKRV + + +P+TP + +PSS ++
Sbjct: 277 MNASMEELARCPGIGERKVKRLYDTFHEPFKRVSARPNLVVPDTPDREKAKGQPSSTDD 335
>gi|195609050|gb|ACG26355.1| hypothetical protein [Zea mays]
Length = 134
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 42/60 (70%), Gaps = 5/60 (8%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRVVSHHPP---IPETPSLKDV--EPSSVN 55
M+ SM++LA CPGI ERKV+ LYDTFHEPFKRV + P +P+TP + +PSS +
Sbjct: 10 MNGSMDELARCPGIGERKVRRLYDTFHEPFKRVPARPRPNLVVPDTPDREKAKGQPSSTD 69
>gi|414870733|tpg|DAA49290.1| TPA: hypothetical protein ZEAMMB73_493341 [Zea mays]
Length = 139
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 42/60 (70%), Gaps = 5/60 (8%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRVVSHHPP---IPETPSLKDV--EPSSVN 55
M+ SM++LA CPGI ERKV+ LYDTFHEPFKRV + P +P+TP + +PSS +
Sbjct: 15 MNGSMDELARCPGIGERKVRRLYDTFHEPFKRVPARPRPNLVVPDTPDREKAKGQPSSTD 74
>gi|414870732|tpg|DAA49289.1| TPA: hypothetical protein ZEAMMB73_493341 [Zea mays]
Length = 162
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 42/60 (70%), Gaps = 5/60 (8%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRVVSHHPP---IPETPSLKDV--EPSSVN 55
M+ SM++LA CPGI ERKV+ LYDTFHEPFKRV + P +P+TP + +PSS +
Sbjct: 38 MNGSMDELARCPGIGERKVRRLYDTFHEPFKRVPARPRPNLVVPDTPDREKAKGQPSSTD 97
>gi|3297891|emb|CAA05781.1| nucleotide repair protein [Lilium longiflorum]
Length = 278
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 34/41 (82%), Gaps = 1/41 (2%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRVVSHHPPIP 41
MDAS+EDLA CPGI ERKVK L+DTFHEPF+R VS+ P +
Sbjct: 196 MDASLEDLARCPGIGERKVKRLHDTFHEPFRR-VSNRPAVA 235
>gi|212721946|ref|NP_001131279.1| uncharacterized protein LOC100192592 [Zea mays]
gi|194691068|gb|ACF79618.1| unknown [Zea mays]
gi|414870731|tpg|DAA49288.1| TPA: mating-type switching protein swi10 [Zea mays]
Length = 397
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 36/47 (76%), Gaps = 3/47 (6%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRVVSHHPP---IPETP 44
M+ SM++LA CPGI ERKV+ LYDTFHEPFKRV + P +P+TP
Sbjct: 273 MNGSMDELARCPGIGERKVRRLYDTFHEPFKRVPARPRPNLVVPDTP 319
>gi|195657333|gb|ACG48134.1| mating-type switching protein swi10 [Zea mays]
Length = 396
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 5/60 (8%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRVVSH---HPPIPETPSLKDV--EPSSVN 55
M+ SM++LA CPGI ERKV+ LYDTFHEPFKRV + + +P+TP + +PSS +
Sbjct: 272 MNGSMDELARCPGIGERKVRRLYDTFHEPFKRVPARPRSNLVVPDTPDREKAKGQPSSTD 331
>gi|302782932|ref|XP_002973239.1| hypothetical protein SELMODRAFT_98787 [Selaginella moellendorffii]
gi|300158992|gb|EFJ25613.1| hypothetical protein SELMODRAFT_98787 [Selaginella moellendorffii]
Length = 232
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/32 (81%), Positives = 27/32 (84%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKR 32
M ASMEDLA CPGI ERKVK LYD FHEPF+R
Sbjct: 181 MSASMEDLARCPGIGERKVKRLYDAFHEPFRR 212
>gi|302823991|ref|XP_002993643.1| hypothetical protein SELMODRAFT_137345 [Selaginella moellendorffii]
gi|300138571|gb|EFJ05335.1| hypothetical protein SELMODRAFT_137345 [Selaginella moellendorffii]
Length = 209
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/32 (78%), Positives = 27/32 (84%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKR 32
M ASMEDLA CPGI ERKVK L+D FHEPF+R
Sbjct: 158 MSASMEDLARCPGIGERKVKRLHDAFHEPFRR 189
>gi|168034367|ref|XP_001769684.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679033|gb|EDQ65485.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 285
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/30 (83%), Positives = 26/30 (86%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKR 32
ASMEDLA CPGI ERKVK LYD FHEPF+R
Sbjct: 254 ASMEDLARCPGIGERKVKRLYDAFHEPFRR 283
>gi|168034363|ref|XP_001769682.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679031|gb|EDQ65483.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 279
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/30 (83%), Positives = 26/30 (86%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKR 32
ASMEDLA CPGI ERKVK LYD FHEPF+R
Sbjct: 248 ASMEDLARCPGIGERKVKRLYDAFHEPFRR 277
>gi|242032375|ref|XP_002463582.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
gi|241917436|gb|EER90580.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
Length = 610
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 19/25 (76%), Positives = 23/25 (92%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDT 25
M+ASME+LA CPGI E+KVKCLYD+
Sbjct: 573 MNASMEELARCPGIGEQKVKCLYDS 597
>gi|440794479|gb|ELR15639.1| DNA repair protein rad10 subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 485
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPF 30
+D SME+L+ CPG+ RKVK LY+TFH PF
Sbjct: 387 IDCSMEELSLCPGLGPRKVKNLYETFHAPF 416
>gi|166157967|ref|NP_001107393.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Xenopus (Silurana) tropicalis]
gi|163916074|gb|AAI57332.1| LOC100135224 protein [Xenopus (Silurana) tropicalis]
gi|213625729|gb|AAI71208.1| hypothetical protein LOC100135224 [Xenopus (Silurana) tropicalis]
gi|213627374|gb|AAI71206.1| hypothetical protein LOC100135224 [Xenopus (Silurana) tropicalis]
Length = 268
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 23/29 (79%)
Query: 2 DASMEDLAGCPGIVERKVKCLYDTFHEPF 30
+AS EDL+ CPG+ +K K LYDTFHEPF
Sbjct: 231 NASREDLSLCPGLGPQKAKRLYDTFHEPF 259
>gi|301100660|ref|XP_002899419.1| DNA excision repair protein ERCC-1 [Phytophthora infestans T30-4]
gi|262103727|gb|EEY61779.1| DNA excision repair protein ERCC-1 [Phytophthora infestans T30-4]
Length = 308
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKR 32
M+ASME+L+ CPG+ +KV+ L +TF EPF +
Sbjct: 274 MNASMEELSLCPGVGAKKVRQLLETFQEPFTK 305
>gi|301777726|ref|XP_002924284.1| PREDICTED: DNA excision repair protein ERCC-1-like [Ailuropoda
melanoleuca]
Length = 306
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
M AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 272 MAASREDLALCPGLGPQKARRLFDVLHEPFLKV 304
>gi|73948160|ref|XP_855116.1| PREDICTED: DNA excision repair protein ERCC-1 [Canis lupus
familiaris]
Length = 294
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
M AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 260 MAASREDLALCPGLGPQKARRLFDVLHEPFLKV 292
>gi|426243944|ref|XP_004015800.1| PREDICTED: DNA excision repair protein ERCC-1 [Ovis aries]
Length = 284
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
+ AS EDL+ CPG+ +K + L+D FHEPF +V
Sbjct: 250 IAASREDLSLCPGLGPQKARRLFDVFHEPFLKV 282
>gi|115496970|ref|NP_001069853.1| DNA excision repair protein ERCC-1 [Bos taurus]
gi|122145868|sp|Q1LZ75.1|ERCC1_BOVIN RecName: Full=DNA excision repair protein ERCC-1
gi|94534838|gb|AAI16164.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Bos taurus]
gi|296477517|tpg|DAA19632.1| TPA: DNA excision repair protein ERCC-1 [Bos taurus]
Length = 294
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
+ AS EDL+ CPG+ +K + L+D FHEPF +V
Sbjct: 260 IAASREDLSLCPGLGPQKARRLFDVFHEPFLKV 292
>gi|440902295|gb|ELR53102.1| DNA excision repair protein ERCC-1, partial [Bos grunniens mutus]
Length = 298
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
+ AS EDL+ CPG+ +K + L+D FHEPF +V
Sbjct: 264 IAASREDLSLCPGLGPQKARRLFDVFHEPFLKV 296
>gi|307111014|gb|EFN59249.1| hypothetical protein CHLNCDRAFT_19196 [Chlorella variabilis]
Length = 297
Score = 41.6 bits (96), Expect = 0.068, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKRVVS 35
AS E+L CPGI K + L++TFH+PF+R +S
Sbjct: 209 ASAEELQACPGIGPTKARRLHETFHQPFRRSIS 241
>gi|348557640|ref|XP_003464627.1| PREDICTED: DNA excision repair protein ERCC-1-like [Cavia
porcellus]
Length = 300
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
M AS +DLA CPG+ +K + L+D HEPF +V
Sbjct: 266 MAASRQDLALCPGLGPQKARRLFDVLHEPFLKV 298
>gi|410897108|ref|XP_003962041.1| PREDICTED: DNA excision repair protein ERCC-1-like [Takifugu
rubripes]
Length = 349
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPF 30
M+AS +DL CPG+ +K + LYD FH+PF
Sbjct: 314 MNASKDDLVLCPGLGPQKARRLYDVFHKPF 343
>gi|428178864|gb|EKX47737.1| ERCC1/Rad10 nucleotide excision repair [Guillardia theta CCMP2712]
Length = 296
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
M AS E LA CPG+ E+K++ L++ F EPF++V
Sbjct: 224 MTASRERLALCPGVGEKKIQRLFEAFREPFRQV 256
>gi|344249242|gb|EGW05346.1| DNA excision repair protein ERCC-1 [Cricetulus griseus]
Length = 111
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
+ AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 77 LTASREDLALCPGLGPQKARRLFDVLHEPFLKV 109
>gi|320166062|gb|EFW42961.1| excision repair enzyme ERCC-1 [Capsaspora owczarzaki ATCC 30864]
Length = 509
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Query: 2 DASMEDLAGCPGIVERKVKCLYDTFHEPF---------KRVVSHHPPIPETPSLK 47
+A+ E L+ CPGI E KV+ +Y+ FH+PF K VS PP+ + K
Sbjct: 346 NATPEQLSRCPGIGEHKVRRIYEAFHQPFTPDAVKGASKTSVSTAPPVRSASTAK 400
>gi|1763756|gb|AAB54060.1| excision repair enzyme ERCC-1 [Mesocricetus auratus]
Length = 127
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
+ AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 93 LTASREDLALCPGLGPQKARRLFDVLHEPFLKV 125
>gi|327289261|ref|XP_003229343.1| PREDICTED: DNA excision repair protein ERCC-1-like [Anolis
carolinensis]
Length = 332
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKR 32
+ AS EDL+ CPGI +K K L+D HEPF +
Sbjct: 286 VQASKEDLSLCPGIGPQKAKRLFDALHEPFYK 317
>gi|328865770|gb|EGG14156.1| DNA excision repair protein 1 [Dictyostelium fasciculatum]
Length = 413
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRVVSHHPPIPET-PSLKDVE 50
D+S E ++ CPGI +KV L+ H+PFK V P+ + PSL+D +
Sbjct: 353 FDSSKEAVSLCPGIGPKKVNSLWSILHQPFKAVKPSPKPVNQNPPSLEDFD 403
>gi|441656301|ref|XP_003277689.2| PREDICTED: DNA excision repair protein ERCC-1 [Nomascus leucogenys]
Length = 195
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
+ AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 162 IAASREDLALCPGLGPQKARRLFDVLHEPFLKV 194
>gi|73536055|pdb|2A1J|B Chain B, Crystal Structure Of The Complex Between The C-Terminal
Domains Of Human Xpf And Ercc1
Length = 91
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 61 ASREDLALCPGLGPQKARRLFDVLHEPFLKV 91
>gi|397493349|ref|XP_003817570.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 2 [Pan
paniscus]
gi|193787266|dbj|BAG52472.1| unnamed protein product [Homo sapiens]
Length = 225
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
+ AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 192 IAASREDLALCPGLGPQKARRLFDVLHEPFLKV 224
>gi|426389188|ref|XP_004061006.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 2 [Gorilla
gorilla gorilla]
Length = 225
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
+ AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 192 IAASREDLALCPGLGPQKARRLFDVLHEPFLKV 224
>gi|402905931|ref|XP_003915761.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 2 [Papio
anubis]
Length = 226
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
+ AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 192 IAASREDLALCPGLGPQKARRLFDVLHEPFLKV 224
>gi|260824255|ref|XP_002607083.1| hypothetical protein BRAFLDRAFT_118676 [Branchiostoma floridae]
gi|229292429|gb|EEN63093.1| hypothetical protein BRAFLDRAFT_118676 [Branchiostoma floridae]
Length = 427
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKR 32
+ AS EDLA CPG +K K +YD H+PF R
Sbjct: 386 IKASKEDLALCPGFGPQKAKRVYDALHQPFLR 417
>gi|85544011|pdb|1Z00|A Chain A, Solution Structure Of The C-Terminal Domain Of Ercc1
Complexed With The C-Terminal Domain Of Xpf
Length = 89
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 48 ASREDLALCPGLGPQKARRLFDVLHEPFLKV 78
>gi|351706988|gb|EHB09907.1| DNA excision repair protein ERCC-1 [Heterocephalus glaber]
Length = 483
Score = 38.9 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
M AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 450 MAASREDLALCPGLGPQKARRLFDVLHEPFLKV 482
>gi|73980826|ref|XP_540176.2| PREDICTED: uncharacterized protein LOC483061 [Canis lupus
familiaris]
Length = 461
Score = 38.9 bits (89), Expect = 0.40, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
M AS EDLA CPG+ +K L+D HEPF +V
Sbjct: 427 MTASREDLALCPGLGPQKAWRLFDVLHEPFLKV 459
>gi|397607163|gb|EJK59580.1| hypothetical protein THAOC_20175 [Thalassiosira oceanica]
Length = 321
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPF 30
++AS+++L+ CPGI +KV L+D FH PF
Sbjct: 248 VNASLDELSVCPGIGPKKVARLHDAFHRPF 277
>gi|224003765|ref|XP_002291554.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973330|gb|EED91661.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 191
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPF 30
+ AS+E+L+ CPG+ +KV+ LY+ FH PF
Sbjct: 161 VGASVEELSVCPGVGVKKVRRLYEAFHRPF 190
>gi|38112301|gb|AAR11240.1| excision repair protein [Macaca mulatta]
Length = 227
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPF 30
+ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 197 IAASREDLALCPGLGPQKARRLFDVLHEPF 226
>gi|390479159|ref|XP_002762336.2| PREDICTED: DNA excision repair protein ERCC-1 [Callithrix jacchus]
Length = 238
Score = 38.5 bits (88), Expect = 0.59, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 206 ASREDLALCPGLGPQKARRLFDVLHEPFLKV 236
>gi|432108802|gb|ELK33410.1| DNA excision repair protein ERCC-1 [Myotis davidii]
Length = 267
Score = 38.1 bits (87), Expect = 0.72, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 235 ASREDLALCPGLGPQKARRLFDVLHEPFLKV 265
>gi|350539469|ref|NP_001233733.1| DNA excision repair protein ERCC-1 [Cricetulus griseus]
gi|6576543|dbj|BAA88319.1| ERCC1 [Cricetulus griseus]
Length = 293
Score = 37.7 bits (86), Expect = 0.78, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
+ AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 259 LTASREDLALCPGLGPQKARRLFDVLHEPFLKV 291
>gi|449663991|ref|XP_004205849.1| PREDICTED: uncharacterized protein LOC101236335 [Hydra
magnipapillata]
Length = 446
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 2 DASMEDLAGCPGIVERKVKCLYDTFHEPFKR----VVSHHPPIPETPS 45
+AS+ +L CPG +K + LY+ HEPFKR + S P T S
Sbjct: 268 NASVVELTLCPGFGPKKAQRLYNALHEPFKRDQKKLTSSQSPSKRTSS 315
>gi|402905929|ref|XP_003915760.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 1 [Papio
anubis]
Length = 298
Score = 37.7 bits (86), Expect = 0.95, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 266 ASREDLALCPGLGPQKARRLFDVLHEPFLKV 296
>gi|426389186|ref|XP_004061005.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 1 [Gorilla
gorilla gorilla]
Length = 297
Score = 37.7 bits (86), Expect = 0.98, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 266 ASREDLALCPGLGPQKARRLFDVLHEPFLKV 296
>gi|38112299|gb|AAR11239.1| excision repair protein [Pan troglodytes]
Length = 251
Score = 37.7 bits (86), Expect = 0.98, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPF 30
AS EDLA CPG+ +K + L+D HEPF
Sbjct: 223 ASREDLALCPGLGPQKARRLFDVLHEPF 250
>gi|402905935|ref|XP_003915763.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 4 [Papio
anubis]
Length = 274
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 242 ASREDLALCPGLGPQKARRLFDVLHEPFLKV 272
>gi|431909163|gb|ELK12753.1| DNA excision repair protein ERCC-1 [Pteropus alecto]
Length = 315
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 284 ASREDLALCPGLGPQKARRLFDVLHEPFLKV 314
>gi|54696472|gb|AAV38608.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [synthetic construct]
gi|60652851|gb|AAX29120.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
gi|60830454|gb|AAX36930.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
gi|61365104|gb|AAX42654.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
gi|61367243|gb|AAX42971.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
Length = 298
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 266 ASREDLALCPGLGPQKARRLFDVLHEPFLKV 296
>gi|297705160|ref|XP_002829451.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 1 [Pongo
abelii]
Length = 297
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 266 ASREDLALCPGLGPQKARRLFDVLHEPFLKV 296
>gi|60655939|gb|AAX32533.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
Length = 297
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 266 ASREDLALCPGLGPQKARRLFDVLHEPFLKV 296
>gi|426389190|ref|XP_004061007.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 3 [Gorilla
gorilla gorilla]
Length = 273
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 242 ASREDLALCPGLGPQKARRLFDVLHEPFLKV 272
>gi|4503599|ref|NP_001974.1| DNA excision repair protein ERCC-1 isoform 2 [Homo sapiens]
gi|302632548|ref|NP_001181860.1| DNA excision repair protein ERCC-1 [Pan troglodytes]
gi|397493347|ref|XP_003817569.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 1 [Pan
paniscus]
gi|119538|sp|P07992.1|ERCC1_HUMAN RecName: Full=DNA excision repair protein ERCC-1
gi|21105797|gb|AAM34796.1|AF512555_1 excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Homo sapiens]
gi|182174|gb|AAA52394.1| excision repair protein [Homo sapiens]
gi|182177|gb|AAA35810.1| excision repair protein [Homo sapiens]
gi|2583146|gb|AAC16253.1| excision repair protein [Homo sapiens]
gi|14286266|gb|AAH08930.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Homo sapiens]
gi|54696474|gb|AAV38609.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Homo sapiens]
gi|60818953|gb|AAX36483.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
gi|61354943|gb|AAX41079.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
gi|61357235|gb|AAX41356.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
gi|61363050|gb|AAX42326.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
gi|119577752|gb|EAW57348.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence), isoform CRA_a [Homo sapiens]
gi|119577754|gb|EAW57350.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence), isoform CRA_a [Homo sapiens]
gi|123990970|gb|ABM83928.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [synthetic construct]
gi|123999343|gb|ABM87247.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [synthetic construct]
gi|410220356|gb|JAA07397.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410220358|gb|JAA07398.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410220362|gb|JAA07400.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410220364|gb|JAA07401.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410254810|gb|JAA15372.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410254812|gb|JAA15373.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410254818|gb|JAA15376.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410295290|gb|JAA26245.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410295292|gb|JAA26246.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410295298|gb|JAA26249.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410335881|gb|JAA36887.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410335883|gb|JAA36888.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410335887|gb|JAA36890.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410335889|gb|JAA36891.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|225908|prf||1403276A DNA repair gene
Length = 297
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 266 ASREDLALCPGLGPQKARRLFDVLHEPFLKV 296
>gi|61357240|gb|AAX41357.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
Length = 297
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 266 ASREDLALCPGLGPQKARRLFDVLHEPFLKV 296
>gi|395751371|ref|XP_003779251.1| PREDICTED: DNA excision repair protein ERCC-1 [Pongo abelii]
Length = 273
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 242 ASREDLALCPGLGPQKARRLFDVLHEPFLKV 272
>gi|189054601|dbj|BAG37398.1| unnamed protein product [Homo sapiens]
Length = 297
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 266 ASREDLALCPGLGPQKARRLFDVLHEPFLKV 296
>gi|260593725|ref|NP_001159521.1| DNA excision repair protein ERCC-1 isoform 3 [Homo sapiens]
gi|397493351|ref|XP_003817571.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 3 [Pan
paniscus]
gi|15146354|dbj|BAB62810.1| excision repair protein 1 [Homo sapiens]
gi|119577753|gb|EAW57349.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence), isoform CRA_b [Homo sapiens]
gi|410220360|gb|JAA07399.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410254814|gb|JAA15374.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410295294|gb|JAA26247.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410335885|gb|JAA36889.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
Length = 273
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 242 ASREDLALCPGLGPQKARRLFDVLHEPFLKV 272
>gi|395854326|ref|XP_003799647.1| PREDICTED: DNA excision repair protein ERCC-1 [Otolemur garnettii]
Length = 239
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 207 ASREDLALCPGLGPQKARRLFDVLHEPFFKV 237
>gi|149722206|ref|XP_001502644.1| PREDICTED: DNA excision repair protein ERCC-1-like [Equus caballus]
Length = 291
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 259 ASREDLALCPGLGPQKARRLFDVLHEPFLKV 289
>gi|410982710|ref|XP_003997691.1| PREDICTED: DNA excision repair protein ERCC-1 [Felis catus]
Length = 306
Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 274 ASREDLALCPGLGPQKARRLFDVLHEPFLKV 304
>gi|345310668|ref|XP_001517592.2| PREDICTED: DNA excision repair protein ERCC-1-like [Ornithorhynchus
anatinus]
Length = 310
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPF 30
AS EDL+ CPG +K + L+DT HEPF
Sbjct: 278 ASAEDLSLCPGFGPQKARRLFDTLHEPF 305
>gi|291414832|ref|XP_002723664.1| PREDICTED: excision repair cross-complementing 1 isofrom 2-like
[Oryctolagus cuniculus]
Length = 301
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKR 32
AS +DLA CPG+ +K + LYD HEPF R
Sbjct: 269 ASRDDLALCPGLGPQKARRLYDVLHEPFLR 298
>gi|444730739|gb|ELW71113.1| DNA excision repair protein ERCC-1 [Tupaia chinensis]
Length = 298
Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 266 ASREDLALCPGLGPQKARRLFDVLHEPFLKV 296
>gi|226442650|ref|NP_001140125.1| DNA excision repair protein ERCC-1 [Salmo salar]
gi|221220050|gb|ACM08686.1| DNA excision repair protein ERCC-1 [Salmo salar]
Length = 383
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
+ A+ EDL CPG+ +K + LYD H+PF +
Sbjct: 346 ITAAKEDLVLCPGLGPQKARRLYDVLHQPFLKA 378
>gi|281202660|gb|EFA76862.1| DNA excision repair protein 1 [Polysphondylium pallidum PN500]
Length = 536
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPF 30
D S E CPG+ ++KV LY+ H+PF
Sbjct: 429 FDGSKESFGLCPGMGQKKVNSLYNVLHQPF 458
>gi|403299027|ref|XP_003940294.1| PREDICTED: DNA excision repair protein ERCC-1 [Saimiri boliviensis
boliviensis]
Length = 321
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
AS EDLA CPG+ +K + L+D HEPF +V
Sbjct: 289 ASREDLALCPGLGPQKARRLFDVLHEPFLKV 319
>gi|156230822|gb|AAI51884.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 1 [Danio rerio]
Length = 342
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPF 30
+ AS E+L CPG+ +K + LYD H+PF
Sbjct: 305 IKASKEELVLCPGLGPQKARRLYDVLHQPF 334
>gi|156739319|ref|NP_001096608.1| DNA excision repair protein ERCC-1 [Danio rerio]
gi|187608525|ref|NP_001120181.1| uncharacterized protein LOC100145222 [Xenopus (Silurana)
tropicalis]
gi|44890524|gb|AAH66697.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 1 [Danio rerio]
gi|156230040|gb|AAI52195.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 1 [Danio rerio]
gi|166796426|gb|AAI59290.1| LOC100145222 protein [Xenopus (Silurana) tropicalis]
Length = 342
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPF 30
+ AS E+L CPG+ +K + LYD H+PF
Sbjct: 305 IKASKEELVLCPGLGPQKARRLYDVLHQPF 334
>gi|348515709|ref|XP_003445382.1| PREDICTED: DNA excision repair protein ERCC-1-like [Oreochromis
niloticus]
Length = 335
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPF 30
+ AS EDL CPG+ +K + L+D H+PF
Sbjct: 298 ISASKEDLVVCPGLGPQKARRLFDVLHKPF 327
>gi|226533697|ref|NP_001152781.1| DNA excision repair protein ERCC-1 [Sus scrofa]
gi|226354716|gb|ACO50967.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [Sus scrofa]
Length = 294
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPF 30
AS EDLA CPG+ +K + L+D HEPF
Sbjct: 262 ASREDLALCPGLGPQKARRLFDVLHEPF 289
>gi|50855|emb|CAA30310.1| unnamed protein product [Mus musculus]
Length = 298
Score = 35.8 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
AS EDLA CPG+ +K + L++ HEPF +V
Sbjct: 266 ASREDLALCPGLGPQKARRLFEVLHEPFLKV 296
>gi|170590826|ref|XP_001900172.1| ABC transporter transmembrane region family protein [Brugia malayi]
gi|158592322|gb|EDP30922.1| ABC transporter transmembrane region family protein [Brugia malayi]
Length = 1537
Score = 35.8 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 34 VSHHPPIPETPSLKDVEPSSVNEVTKVKKDTEERKQNVGR 73
+SHHP I E+ ++P S E KV K TE K VGR
Sbjct: 916 ISHHPSIAESLFESSIDPMSSGEKGKVGKMTEVEKVKVGR 955
>gi|344269327|ref|XP_003406504.1| PREDICTED: DNA excision repair protein ERCC-1-like [Loxodonta
africana]
Length = 298
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPF 30
AS EDLA CPG+ +K + L+D HEPF
Sbjct: 266 ASREDLALCPGLGPQKARRLFDVLHEPF 293
>gi|187960064|ref|NP_031974.2| DNA excision repair protein ERCC-1 isoform a [Mus musculus]
gi|408360078|sp|P07903.2|ERCC1_MOUSE RecName: Full=DNA excision repair protein ERCC-1
gi|15029977|gb|AAH11224.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 1 [Mus musculus]
gi|26353238|dbj|BAC40249.1| unnamed protein product [Mus musculus]
gi|74203782|dbj|BAE23112.1| unnamed protein product [Mus musculus]
gi|148691190|gb|EDL23137.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 [Mus musculus]
Length = 298
Score = 35.4 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 3 ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
AS EDLA CPG+ +K + L++ HEPF +V
Sbjct: 266 ASREDLALCPGLGPQKARRLFEVLHEPFLKV 296
>gi|157819415|ref|NP_001099698.1| DNA excision repair protein ERCC-1 [Rattus norvegicus]
gi|149056779|gb|EDM08210.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (predicted), isoform CRA_a
[Rattus norvegicus]
gi|149056780|gb|EDM08211.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (predicted), isoform CRA_a
[Rattus norvegicus]
Length = 298
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
+ AS EDLA CPG+ +K + L++ HEPF +V
Sbjct: 264 ITASREDLALCPGLGPQKARRLFEVLHEPFLKV 296
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.131 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,250,880,299
Number of Sequences: 23463169
Number of extensions: 44199751
Number of successful extensions: 118184
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 118082
Number of HSP's gapped (non-prelim): 101
length of query: 77
length of database: 8,064,228,071
effective HSP length: 48
effective length of query: 29
effective length of database: 6,937,995,959
effective search space: 201201882811
effective search space used: 201201882811
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 69 (31.2 bits)