BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034973
         (77 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9MA98|ERCC1_ARATH DNA excision repair protein ERCC-1 OS=Arabidopsis thaliana GN=ERCC1
           PE=2 SV=1
          Length = 410

 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/54 (70%), Positives = 40/54 (74%), Gaps = 5/54 (9%)

Query: 1   MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRVVSHH-----PPIPETPSLKDV 49
           +DASMEDLA CPGI ERKVK LYDTFHEPFKR  S +     PPIPE P  KDV
Sbjct: 289 IDASMEDLARCPGIGERKVKRLYDTFHEPFKRATSSYPSVVEPPIPEAPVEKDV 342


>sp|Q1LZ75|ERCC1_BOVIN DNA excision repair protein ERCC-1 OS=Bos taurus GN=ERCC1 PE=2 SV=1
          Length = 294

 Score = 41.6 bits (96), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 24/33 (72%)

Query: 1   MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
           + AS EDL+ CPG+  +K + L+D FHEPF +V
Sbjct: 260 IAASREDLSLCPGLGPQKARRLFDVFHEPFLKV 292


>sp|P07992|ERCC1_HUMAN DNA excision repair protein ERCC-1 OS=Homo sapiens GN=ERCC1 PE=1
           SV=1
          Length = 297

 Score = 37.4 bits (85), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 3   ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
           AS EDLA CPG+  +K + L+D  HEPF +V
Sbjct: 266 ASREDLALCPGLGPQKARRLFDVLHEPFLKV 296


>sp|P07903|ERCC1_MOUSE DNA excision repair protein ERCC-1 OS=Mus musculus GN=Ercc1 PE=2
           SV=2
          Length = 298

 Score = 35.4 bits (80), Expect = 0.095,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 3   ASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33
           AS EDLA CPG+  +K + L++  HEPF +V
Sbjct: 266 ASREDLALCPGLGPQKARRLFEVLHEPFLKV 296


>sp|Q9CHZ9|YIDC2_LACLA Membrane protein insertase YidC 2 OS=Lactococcus lactis subsp.
           lactis (strain IL1403) GN=yidC2 PE=3 SV=2
          Length = 320

 Score = 32.0 bits (71), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 6/48 (12%)

Query: 35  SHHPPIPETPSLKDVEPSSVNEVTK---VKKDTEERK---QNVGRKNR 76
           + +PP      LKDV P+SV E  K    +++ +ERK   +N G++NR
Sbjct: 272 TKNPPKINNEGLKDVTPTSVQENFKEITSERNEKERKSGGRNAGKQNR 319


>sp|O34591|ACOB_BACSU Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta
           OS=Bacillus subtilis (strain 168) GN=acoB PE=3 SV=3
          Length = 342

 Score = 30.0 bits (66), Expect = 4.8,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 23  YDTFHEPFKRVVSHHPPIPETPSLKD 48
           +D    P KR+ + H P+P +P L+D
Sbjct: 294 FDLLDAPIKRITAPHTPVPFSPVLED 319


>sp|Q9QXN1|LEF1_RAT Lymphoid enhancer-binding factor 1 OS=Rattus norvegicus GN=Lef1
           PE=2 SV=1
          Length = 397

 Score = 28.9 bits (63), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 31  KRVVSHHPPIPETPSLKDVEPSSVNEVT 58
           K+ +S HPP PE P+   + P  V ++T
Sbjct: 179 KQGMSRHPPAPEMPTFYPLSPGGVGQIT 206


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.131    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,492,859
Number of Sequences: 539616
Number of extensions: 1098863
Number of successful extensions: 3075
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3058
Number of HSP's gapped (non-prelim): 21
length of query: 77
length of database: 191,569,459
effective HSP length: 48
effective length of query: 29
effective length of database: 165,667,891
effective search space: 4804368839
effective search space used: 4804368839
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)