Query 034973
Match_columns 77
No_of_seqs 97 out of 99
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 13:19:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034973.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034973hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x2i_A HEF helicase/nuclease; 97.9 4.1E-06 1.4E-10 48.8 2.2 32 2-33 42-73 (75)
2 2a1j_B DNA excision repair pro 97.9 4.5E-06 1.5E-10 51.7 2.3 31 2-32 60-90 (91)
3 1z00_A DNA excision repair pro 97.9 5.7E-06 2E-10 50.7 2.3 32 2-33 47-78 (89)
4 2bgw_A XPF endonuclease; hydro 97.7 1.9E-05 6.4E-10 54.7 3.1 31 1-31 189-219 (219)
5 3arc_U Photosystem II 12 kDa e 97.5 4.9E-05 1.7E-09 49.4 2.8 30 2-33 22-51 (97)
6 1s5l_U Photosystem II 12 kDa e 97.3 0.00016 5.3E-09 50.2 3.2 30 2-33 59-88 (134)
7 2a1j_A DNA repair endonuclease 97.3 8E-05 2.7E-09 44.3 1.5 30 2-33 32-62 (63)
8 1kft_A UVRC, excinuclease ABC 97.1 0.00018 6.1E-09 43.1 1.7 27 2-28 52-78 (78)
9 2duy_A Competence protein come 96.9 0.00069 2.4E-08 40.2 2.9 25 2-26 23-47 (75)
10 2i5h_A Hypothetical protein AF 96.2 0.002 6.7E-08 47.4 2.1 33 1-33 127-160 (205)
11 2duy_A Competence protein come 95.9 0.0042 1.4E-07 36.8 2.1 25 3-27 50-74 (75)
12 2edu_A Kinesin-like protein KI 95.8 0.005 1.7E-07 38.4 2.4 30 2-31 36-67 (98)
13 1ixr_A Holliday junction DNA h 95.4 0.011 3.7E-07 41.8 3.1 29 2-30 103-131 (191)
14 2owo_A DNA ligase; protein-DNA 95.3 0.0081 2.8E-07 49.6 2.4 30 1-30 539-568 (671)
15 1z00_B DNA repair endonuclease 95.2 0.0046 1.6E-07 38.9 0.7 30 2-33 46-76 (84)
16 1dgs_A DNA ligase; AMP complex 95.1 0.011 3.9E-07 48.7 2.9 31 1-31 534-564 (667)
17 1cuk_A RUVA protein; DNA repai 95.0 0.015 5.1E-07 41.3 3.0 29 2-30 104-132 (203)
18 2a1j_A DNA repair endonuclease 94.8 0.017 5.9E-07 34.0 2.4 24 5-28 3-26 (63)
19 3c1y_A DNA integrity scanning 94.3 0.028 9.5E-07 44.0 3.1 31 1-31 342-372 (377)
20 3sgi_A DNA ligase; HET: DNA AM 93.8 0.011 3.7E-07 48.6 0.0 33 1-33 556-588 (615)
21 3c65_A Uvrabc system protein C 93.5 0.013 4.5E-07 42.8 0.0 25 2-27 201-225 (226)
22 4glx_A DNA ligase; inhibitor, 93.5 0.027 9.4E-07 45.8 1.8 30 2-31 540-569 (586)
23 2edu_A Kinesin-like protein KI 93.4 0.059 2E-06 33.4 2.8 23 3-25 67-89 (98)
24 1kft_A UVRC, excinuclease ABC 93.0 0.028 9.7E-07 33.3 0.9 24 5-28 23-46 (78)
25 1z00_B DNA repair endonuclease 92.7 0.076 2.6E-06 33.2 2.6 25 5-29 17-41 (84)
26 2ztd_A Holliday junction ATP-d 92.6 0.068 2.3E-06 38.5 2.6 29 2-30 119-147 (212)
27 1z00_A DNA excision repair pro 92.6 0.079 2.7E-06 32.0 2.5 24 5-28 18-41 (89)
28 2fmp_A DNA polymerase beta; nu 92.5 0.051 1.7E-06 40.7 1.9 22 4-25 96-117 (335)
29 1x2i_A HEF helicase/nuclease; 92.1 0.1 3.4E-06 29.7 2.4 23 6-28 14-36 (75)
30 2rhf_A DNA helicase RECQ; HRDC 91.9 0.13 4.6E-06 30.5 2.9 23 3-25 44-66 (77)
31 2a1j_B DNA excision repair pro 91.8 0.11 3.9E-06 31.5 2.6 23 6-28 32-54 (91)
32 1vq8_Y 50S ribosomal protein L 91.2 0.039 1.3E-06 40.3 0.0 27 2-28 44-70 (241)
33 2e1f_A Werner syndrome ATP-dep 91.2 0.12 3.9E-06 33.2 2.2 25 3-28 54-78 (103)
34 1b22_A DNA repair protein RAD5 91.0 0.1 3.5E-06 34.4 1.9 27 2-28 54-80 (114)
35 1wud_A ATP-dependent DNA helic 90.8 0.2 6.8E-06 30.8 3.0 22 3-24 52-73 (89)
36 1jms_A Terminal deoxynucleotid 90.8 0.12 4E-06 39.6 2.3 21 5-25 120-140 (381)
37 2ihm_A POL MU, DNA polymerase 90.6 0.14 4.7E-06 38.8 2.5 21 5-25 101-121 (360)
38 1vq8_Y 50S ribosomal protein L 90.4 0.05 1.7E-06 39.7 0.0 23 3-25 12-34 (241)
39 3bzc_A TEX; helix-turn-helix, 90.3 0.17 5.9E-06 42.4 3.1 32 2-33 504-537 (785)
40 2kv2_A Bloom syndrome protein; 89.8 0.2 7E-06 30.4 2.4 23 3-25 46-68 (85)
41 2bcq_A DNA polymerase lambda; 89.7 0.18 6.3E-06 37.7 2.5 18 8-25 98-115 (335)
42 3vdp_A Recombination protein R 89.2 0.18 6.1E-06 37.0 2.1 17 6-22 26-42 (212)
43 1vdd_A Recombination protein R 88.2 0.23 7.7E-06 36.9 2.1 17 6-22 12-28 (228)
44 3psf_A Transcription elongatio 86.2 0.22 7.5E-06 43.0 1.2 28 4-31 715-745 (1030)
45 2rrd_A BLM HRDC domain, HRDC d 86.2 0.47 1.6E-05 30.1 2.5 22 3-24 61-82 (101)
46 1ixr_A Holliday junction DNA h 86.2 0.41 1.4E-05 33.6 2.4 22 7-28 73-94 (191)
47 2w9m_A Polymerase X; SAXS, DNA 85.3 0.42 1.4E-05 37.7 2.3 21 5-25 96-116 (578)
48 1cuk_A RUVA protein; DNA repai 84.4 0.5 1.7E-05 33.4 2.2 22 7-28 74-95 (203)
49 2bgw_A XPF endonuclease; hydro 84.2 0.56 1.9E-05 32.1 2.3 23 7-29 163-185 (219)
50 2dgz_A Werner syndrome protein 83.7 0.18 6.1E-06 32.9 -0.4 25 3-28 61-85 (113)
51 4glx_A DNA ligase; inhibitor, 83.4 0.62 2.1E-05 37.9 2.6 26 3-28 477-502 (586)
52 3psi_A Transcription elongatio 83.2 0.36 1.2E-05 42.4 1.2 28 4-31 712-742 (1219)
53 1z3e_B DNA-directed RNA polyme 82.6 0.92 3.2E-05 27.8 2.6 27 2-28 37-63 (73)
54 3b0x_A DNA polymerase beta fam 82.4 0.66 2.2E-05 36.4 2.3 22 5-26 92-113 (575)
55 2bcq_A DNA polymerase lambda; 81.9 0.96 3.3E-05 33.8 2.9 26 3-28 54-79 (335)
56 2kp7_A Crossover junction endo 80.8 1.1 3.9E-05 28.0 2.6 26 3-28 55-80 (87)
57 1wcn_A Transcription elongatio 79.3 1.5 5E-05 26.3 2.6 30 2-31 36-66 (70)
58 2ztd_A Holliday junction ATP-d 79.1 1.2 4E-05 31.9 2.5 23 7-29 89-111 (212)
59 2nrt_A Uvrabc system protein C 78.7 0.51 1.7E-05 34.3 0.5 20 7-26 169-188 (220)
60 3arc_U Photosystem II 12 kDa e 78.5 1.6 5.5E-05 27.9 2.8 26 3-28 49-74 (97)
61 3gfk_B DNA-directed RNA polyme 78.1 2 6.8E-05 26.8 3.1 27 2-28 44-70 (79)
62 2fmp_A DNA polymerase beta; nu 77.3 1.6 5.5E-05 32.5 2.9 26 3-28 54-79 (335)
63 3k4g_A DNA-directed RNA polyme 76.0 2.1 7.2E-05 27.2 2.8 27 3-29 41-67 (86)
64 1kg2_A A/G-specific adenine gl 74.9 2.7 9.3E-05 29.2 3.4 27 3-29 106-133 (225)
65 4gfj_A Topoisomerase V; helix- 74.7 1.5 5.3E-05 36.6 2.3 25 7-31 469-493 (685)
66 2ihm_A POL MU, DNA polymerase 74.6 1.9 6.6E-05 32.5 2.7 26 3-28 58-83 (360)
67 1pu6_A 3-methyladenine DNA gly 73.9 2.5 8.4E-05 29.5 3.0 27 3-29 118-145 (218)
68 2nrt_A Uvrabc system protein C 73.2 1.9 6.5E-05 31.3 2.3 14 14-27 206-220 (220)
69 1u9l_A Transcription elongatio 72.1 3.4 0.00012 24.9 2.9 25 3-27 36-60 (70)
70 3c65_A Uvrabc system protein C 71.7 0.8 2.7E-05 33.3 0.0 24 5-28 172-195 (226)
71 2owo_A DNA ligase; protein-DNA 71.0 2.6 8.8E-05 34.9 2.8 27 2-28 476-502 (671)
72 1coo_A RNA polymerase alpha su 70.5 3 0.0001 27.0 2.6 28 2-29 52-79 (98)
73 3maj_A DNA processing chain A; 70.1 2.3 7.9E-05 33.0 2.3 22 8-29 28-49 (382)
74 1ci4_A Protein (barrier-TO-aut 69.1 2.9 9.8E-05 27.1 2.2 18 7-24 19-36 (89)
75 3bqs_A Uncharacterized protein 68.9 2.2 7.5E-05 27.0 1.6 21 4-24 2-22 (93)
76 3mab_A Uncharacterized protein 68.5 2.1 7.1E-05 27.2 1.4 21 4-24 2-22 (93)
77 4b21_A Probable DNA-3-methylad 66.4 4.4 0.00015 28.7 2.9 24 3-27 104-127 (232)
78 3fhg_A Mjogg, N-glycosylase/DN 66.4 3.5 0.00012 28.4 2.4 22 4-25 115-136 (207)
79 1kea_A Possible G-T mismatches 65.0 4.8 0.00017 27.9 2.9 27 3-29 112-139 (221)
80 1exn_A 5'-exonuclease, 5'-nucl 64.1 3.1 0.00011 30.9 1.9 24 5-28 202-225 (290)
81 1jms_A Terminal deoxynucleotid 63.4 4.2 0.00014 31.0 2.5 26 3-28 77-102 (381)
82 2w9m_A Polymerase X; SAXS, DNA 63.1 4.3 0.00015 32.0 2.6 25 7-31 132-162 (578)
83 1dgs_A DNA ligase; AMP complex 63.0 1.8 6E-05 35.8 0.4 26 3-28 472-497 (667)
84 1s5l_U Photosystem II 12 kDa e 62.9 5.1 0.00018 27.5 2.6 21 3-23 86-106 (134)
85 1orn_A Endonuclease III; DNA r 62.0 5.8 0.0002 27.7 2.9 27 3-29 110-137 (226)
86 2abk_A Endonuclease III; DNA-r 61.7 5.6 0.00019 27.2 2.7 27 3-29 106-133 (211)
87 1rxw_A Flap structure-specific 60.5 4.6 0.00016 29.5 2.2 20 8-27 237-256 (336)
88 3fsp_A A/G-specific adenine gl 59.4 8.3 0.00028 28.3 3.4 28 3-30 115-143 (369)
89 2ziu_A MUS81 protein; helix-ha 58.5 5.7 0.00019 28.5 2.3 26 6-31 237-262 (311)
90 2h56_A DNA-3-methyladenine gly 58.2 6 0.00021 27.8 2.4 26 4-29 136-162 (233)
91 3b0x_A DNA polymerase beta fam 57.4 5.8 0.0002 31.1 2.4 26 6-31 128-159 (575)
92 2izo_A FEN1, flap structure-sp 56.7 5.6 0.00019 29.3 2.1 18 10-27 238-255 (346)
93 2yg9_A DNA-3-methyladenine gly 54.6 7.5 0.00025 27.2 2.4 25 5-29 145-170 (225)
94 3saf_A Exosome component 10; e 54.2 5.8 0.0002 30.6 1.9 27 3-29 368-394 (428)
95 4b21_A Probable DNA-3-methylad 54.0 7.6 0.00026 27.5 2.4 25 5-29 149-174 (232)
96 3q8k_A Flap endonuclease 1; he 53.6 7 0.00024 29.1 2.2 18 10-27 236-253 (341)
97 3ory_A Flap endonuclease 1; hy 52.5 7.2 0.00025 29.4 2.2 18 10-27 255-272 (363)
98 1mpg_A ALKA, 3-methyladenine D 51.9 8.5 0.00029 27.4 2.4 25 5-29 206-231 (282)
99 1b43_A Protein (FEN-1); nuclea 50.9 7.2 0.00025 28.5 1.9 18 10-27 241-258 (340)
100 3qe9_Y Exonuclease 1; exonucle 50.4 7.9 0.00027 29.0 2.0 19 9-27 228-246 (352)
101 3n5n_X A/G-specific adenine DN 49.9 13 0.00043 27.5 3.1 27 3-29 125-153 (287)
102 4gfj_A Topoisomerase V; helix- 49.9 5.9 0.0002 33.2 1.4 22 1-23 495-516 (685)
103 3s6i_A DNA-3-methyladenine gly 49.6 9.9 0.00034 26.7 2.4 25 5-29 138-163 (228)
104 2hbj_A Exosome complex exonucl 49.5 8 0.00027 29.3 2.0 26 3-28 352-377 (410)
105 3i0w_A 8-oxoguanine-DNA-glycos 49.3 9.8 0.00033 27.6 2.4 25 5-29 210-235 (290)
106 2jhn_A ALKA, 3-methyladenine D 48.3 11 0.00036 27.3 2.4 24 5-29 209-233 (295)
107 4e9f_A Methyl-CPG-binding doma 47.7 7.3 0.00025 26.4 1.4 20 4-23 102-121 (161)
108 1a76_A Flap endonuclease-1 pro 47.6 9 0.00031 27.8 1.9 16 10-25 229-244 (326)
109 3fhf_A Mjogg, N-glycosylase/DN 46.0 11 0.00038 26.6 2.2 27 4-30 122-150 (214)
110 2xhi_A N-glycosylase/DNA lyase 44.8 12 0.00042 28.1 2.4 26 4-29 251-277 (360)
111 1ul1_X Flap endonuclease-1; pr 41.3 14 0.00047 27.7 2.1 18 10-27 236-253 (379)
112 2va8_A SSO2462, SKI2-type heli 40.1 16 0.00054 28.3 2.3 22 5-26 656-677 (715)
113 3n0u_A Probable N-glycosylase/ 39.1 17 0.00057 25.7 2.2 25 4-28 127-152 (219)
114 1yt3_A Ribonuclease D, RNAse D 37.8 21 0.00073 26.0 2.7 25 3-28 253-277 (375)
115 3bej_E Nuclear receptor coacti 34.7 21 0.00071 18.6 1.6 21 51-71 2-22 (26)
116 2zj8_A DNA helicase, putative 33.8 18 0.0006 28.2 1.7 25 6-30 646-671 (720)
117 2zix_A Crossover junction endo 33.3 2.3 7.8E-05 30.8 -3.2 26 5-30 232-257 (307)
118 1u57_A GAG polyprotein, HIV-1; 32.5 12 0.00043 20.6 0.5 23 6-28 3-27 (48)
119 2l09_A ASR4154 protein; proto- 30.5 39 0.0013 20.3 2.6 22 5-26 10-31 (62)
120 3sgi_A DNA ligase; HET: DNA AM 28.2 12 0.00042 30.7 0.0 25 4-28 489-519 (615)
121 2p6r_A Afuhel308 helicase; pro 27.4 29 0.001 26.8 2.0 21 5-25 631-651 (702)
122 1y6u_A XIS, excisionase from t 27.0 30 0.001 20.4 1.6 28 4-31 18-46 (70)
123 3im1_A Protein SNU246, PRE-mRN 26.5 36 0.0012 24.4 2.2 19 6-24 157-175 (328)
124 3bzc_A TEX; helix-turn-helix, 25.7 31 0.0011 29.0 2.0 25 3-27 535-559 (785)
125 2kru_A Light-independent proto 24.7 38 0.0013 20.4 1.7 22 5-26 11-32 (63)
126 3q8j_A Asteropsin A, ABU8-1; c 23.9 21 0.00072 19.8 0.4 7 10-16 17-23 (37)
127 1d8b_A SGS1 RECQ helicase; fiv 21.3 56 0.0019 20.7 2.1 20 3-22 45-64 (81)
128 3c1y_A DNA integrity scanning 20.5 50 0.0017 25.7 2.1 22 8-29 317-338 (377)
No 1
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=97.93 E-value=4.1e-06 Score=48.75 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=28.9
Q ss_pred CCChhHHhcCCCchHHHHHHHHHHhccccccc
Q 034973 2 DASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33 (77)
Q Consensus 2 ~AS~E~Ls~CPG~G~~KarrL~~afhePF~k~ 33 (77)
.|+.++|..+||||+++|..|+..|++||...
T Consensus 42 ~a~~~~L~~i~Gig~~~a~~i~~~~~~~~~~~ 73 (75)
T 1x2i_A 42 TASVAELMKVEGIGEKIAKEIRRVITAPYIED 73 (75)
T ss_dssp HCCHHHHTTSTTCCHHHHHHHHHHHHSCCCC-
T ss_pred hCCHHHHhcCCCCCHHHHHHHHHHHhCccccc
Confidence 47899999999999999999999999999754
No 2
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=97.91 E-value=4.5e-06 Score=51.67 Aligned_cols=31 Identities=52% Similarity=0.897 Sum_probs=29.1
Q ss_pred CCChhHHhcCCCchHHHHHHHHHHhcccccc
Q 034973 2 DASMEDLAGCPGIVERKVKCLYDTFHEPFKR 32 (77)
Q Consensus 2 ~AS~E~Ls~CPG~G~~KarrL~~afhePF~k 32 (77)
.|+.++|..+||||+++|.+|++.|++||.+
T Consensus 60 ~as~~eL~~i~GIG~~~a~~I~~~l~~~~~~ 90 (91)
T 2a1j_B 60 AASREDLALCPGLGPQKARRLFDVLHEPFLK 90 (91)
T ss_dssp SCCHHHHHTSSSCCSHHHHHHHHHHHSCSCC
T ss_pred hCCHHHHHhCCCCCHHHHHHHHHHHhhhhcC
Confidence 5889999999999999999999999999975
No 3
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=97.88 E-value=5.7e-06 Score=50.74 Aligned_cols=32 Identities=53% Similarity=0.905 Sum_probs=29.9
Q ss_pred CCChhHHhcCCCchHHHHHHHHHHhccccccc
Q 034973 2 DASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33 (77)
Q Consensus 2 ~AS~E~Ls~CPG~G~~KarrL~~afhePF~k~ 33 (77)
.|+.++|..+||||+++|.+|+..|++||...
T Consensus 47 ~a~~~eL~~i~GIG~~~a~~I~~~l~~~~~~~ 78 (89)
T 1z00_A 47 AASREDLALCPGLGPQKARRLFDVLHEPFLKV 78 (89)
T ss_dssp HCCHHHHHTSTTCCHHHHHHHHHHHHSCSSSC
T ss_pred hCCHHHHHhCCCCCHHHHHHHHHHHHHHhccc
Confidence 57899999999999999999999999999865
No 4
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=97.72 E-value=1.9e-05 Score=54.75 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=29.0
Q ss_pred CCCChhHHhcCCCchHHHHHHHHHHhccccc
Q 034973 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFK 31 (77)
Q Consensus 1 i~AS~E~Ls~CPG~G~~KarrL~~afhePF~ 31 (77)
+.|+.++|..+||||+++|++|++.|++||.
T Consensus 189 ~~a~~e~L~~v~GiG~~~a~~i~~~~~~~~~ 219 (219)
T 2bgw_A 189 FTASKAEISKVEGIGEKRAEEIKKILMTPYK 219 (219)
T ss_dssp TTCCHHHHHHSTTCCHHHHHHHHHHHHSCCC
T ss_pred HhCCHHHHhhCCCCCHHHHHHHHHHHhcccC
Confidence 4689999999999999999999999999984
No 5
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=97.52 E-value=4.9e-05 Score=49.43 Aligned_cols=30 Identities=13% Similarity=0.362 Sum_probs=27.8
Q ss_pred CCChhHHhcCCCchHHHHHHHHHHhccccccc
Q 034973 2 DASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33 (77)
Q Consensus 2 ~AS~E~Ls~CPG~G~~KarrL~~afhePF~k~ 33 (77)
+||.++|..+||||+.+|++|.+ |-||...
T Consensus 22 tAs~~eL~~lpGIG~~~A~~IV~--~GpF~s~ 51 (97)
T 3arc_U 22 NTNIAAFIQYRGLYPTLAKLIVK--NAPYESV 51 (97)
T ss_dssp TSCGGGGGGSTTCTTHHHHHHHH--HCCCSSG
T ss_pred cCCHHHHhHCCCCCHHHHHHHHH--cCCCCCH
Confidence 58999999999999999999999 8999765
No 6
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=97.29 E-value=0.00016 Score=50.23 Aligned_cols=30 Identities=13% Similarity=0.320 Sum_probs=27.3
Q ss_pred CCChhHHhcCCCchHHHHHHHHHHhccccccc
Q 034973 2 DASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33 (77)
Q Consensus 2 ~AS~E~Ls~CPG~G~~KarrL~~afhePF~k~ 33 (77)
+||.++|..+|||||+||++|. -|-||...
T Consensus 59 tA~~~eL~~LpGiGp~~A~~II--~~GpF~sv 88 (134)
T 1s5l_U 59 NTNIAAFIQYRGLYPTLAKLIV--KNAPYESV 88 (134)
T ss_dssp TSCGGGGGGSTTCTHHHHHHHH--HTCCCSSG
T ss_pred ccCHHHHHHCCCCCHHHHHHHH--HcCCCCCH
Confidence 5899999999999999999999 48899766
No 7
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=97.29 E-value=8e-05 Score=44.27 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=26.2
Q ss_pred CCChhHHhcCCCchHHH-HHHHHHHhccccccc
Q 034973 2 DASMEDLAGCPGIVERK-VKCLYDTFHEPFKRV 33 (77)
Q Consensus 2 ~AS~E~Ls~CPG~G~~K-arrL~~afhePF~k~ 33 (77)
+||.|||+.+ +|..+ |++||+.||++|...
T Consensus 32 ~As~eeL~~v--ig~~~~A~~I~~~l~~~~~~~ 62 (63)
T 2a1j_A 32 ALSQDELTSI--LGNAANAKQLYDFIHTSFAEV 62 (63)
T ss_dssp TCCHHHHHHH--HSCHHHHHHHHHHHHCCCCCC
T ss_pred HCCHHHHHHH--cCchHHHHHHHHHHhcccccc
Confidence 6899999999 88888 999999999998754
No 8
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=97.11 E-value=0.00018 Score=43.15 Aligned_cols=27 Identities=26% Similarity=0.499 Sum_probs=22.9
Q ss_pred CCChhHHhcCCCchHHHHHHHHHHhcc
Q 034973 2 DASMEDLAGCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 2 ~AS~E~Ls~CPG~G~~KarrL~~afhe 28 (77)
.|+.++|..+||||+++|.+|++.|++
T Consensus 52 ~a~~eeL~~i~GIG~~~a~~I~~~~~~ 78 (78)
T 1kft_A 52 NASVEEIAKVPGISQGLAEKIFWSLKH 78 (78)
T ss_dssp HCCHHHHTTSSSTTSHHHHHHHHHHTC
T ss_pred HCCHHHHHHCCCCCHHHHHHHHHHHhC
Confidence 478889999999999999999888863
No 9
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=96.88 E-value=0.00069 Score=40.25 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=23.1
Q ss_pred CCChhHHhcCCCchHHHHHHHHHHh
Q 034973 2 DASMEDLAGCPGIVERKVKCLYDTF 26 (77)
Q Consensus 2 ~AS~E~Ls~CPG~G~~KarrL~~af 26 (77)
.|+.++|..+||+|++.|++|.+.+
T Consensus 23 ~a~~~~L~~ipGIG~~~A~~Il~~r 47 (75)
T 2duy_A 23 EASLEELMALPGIGPVLARRIVEGR 47 (75)
T ss_dssp TCCHHHHTTSTTCCHHHHHHHHHTC
T ss_pred hCCHHHHHhCCCCCHHHHHHHHHHc
Confidence 4789999999999999999999976
No 10
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=96.20 E-value=0.002 Score=47.41 Aligned_cols=33 Identities=18% Similarity=0.404 Sum_probs=26.6
Q ss_pred CCCChhHHhcCCCchHHHHHHHHHHhc-cccccc
Q 034973 1 MDASMEDLAGCPGIVERKVKCLYDTFH-EPFKRV 33 (77)
Q Consensus 1 i~AS~E~Ls~CPG~G~~KarrL~~afh-ePF~k~ 33 (77)
|+|+.++|..+||||+++|++|.+.=. .||...
T Consensus 127 ITA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~ 160 (205)
T 2i5h_A 127 ITTRMHQLELLPGVGKKMMWAIIEERKKRPFESF 160 (205)
T ss_dssp BCSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSH
T ss_pred ccCCHHHHhcCCCcCHHHHHHHHHHHhcCCCCCH
Confidence 479999999999999999999966432 477543
No 11
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=95.85 E-value=0.0042 Score=36.76 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=22.3
Q ss_pred CChhHHhcCCCchHHHHHHHHHHhc
Q 034973 3 ASMEDLAGCPGIVERKVKCLYDTFH 27 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~~afh 27 (77)
+|.+||..+||||++++.+|+..|+
T Consensus 50 ~s~~eL~~v~Gig~k~~~~i~~~l~ 74 (75)
T 2duy_A 50 ARVEDLLKVKGIGPATLERLRPYLR 74 (75)
T ss_dssp SSGGGGGGSTTCCHHHHHHHGGGEE
T ss_pred CCHHHHHhCCCCCHHHHHHHHHhcc
Confidence 6889999999999999999987654
No 12
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=95.83 E-value=0.005 Score=38.41 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=26.4
Q ss_pred CCChhHHhcCCCchHHHHHHHHHHhc--cccc
Q 034973 2 DASMEDLAGCPGIVERKVKCLYDTFH--EPFK 31 (77)
Q Consensus 2 ~AS~E~Ls~CPG~G~~KarrL~~afh--ePF~ 31 (77)
.|+.++|..+||+|+..|++|.+.+. .+|.
T Consensus 36 ~a~~~~L~~ipGIG~~~A~~Il~~r~~~g~f~ 67 (98)
T 2edu_A 36 EGSARDLRSLQRIGPKKAQLIVGWRELHGPFS 67 (98)
T ss_dssp HSCHHHHHHSTTCCHHHHHHHHHHHHHHCCCS
T ss_pred hCCHHHHHHCCCCCHHHHHHHHHHHHhcCCcC
Confidence 37889999999999999999999985 5884
No 13
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=95.39 E-value=0.011 Score=41.76 Aligned_cols=29 Identities=10% Similarity=0.135 Sum_probs=26.4
Q ss_pred CCChhHHhcCCCchHHHHHHHHHHhcccc
Q 034973 2 DASMEDLAGCPGIVERKVKCLYDTFHEPF 30 (77)
Q Consensus 2 ~AS~E~Ls~CPG~G~~KarrL~~afhePF 30 (77)
.++.++|...||+|+++|+||+..|+.-+
T Consensus 103 ~~d~~~L~~vpGIG~K~A~rI~~~lk~k~ 131 (191)
T 1ixr_A 103 EGDARLLTSASGVGRRLAERIALELKGKV 131 (191)
T ss_dssp TTCHHHHTTSTTCCHHHHHHHHHHHTTTS
T ss_pred hCCHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 57899999999999999999999998655
No 14
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=95.25 E-value=0.0081 Score=49.61 Aligned_cols=30 Identities=23% Similarity=0.223 Sum_probs=28.3
Q ss_pred CCCChhHHhcCCCchHHHHHHHHHHhcccc
Q 034973 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPF 30 (77)
Q Consensus 1 i~AS~E~Ls~CPG~G~~KarrL~~afhePF 30 (77)
+.||.|+|..+||||++.|+.|++.|+.|.
T Consensus 539 ~~As~eeL~~i~GIG~~~A~sI~~ff~~~~ 568 (671)
T 2owo_A 539 EAASIEELQKVPDVGIVVASHVHNFFAEES 568 (671)
T ss_dssp HTCCHHHHTTSTTCCHHHHHHHHHHHTCHH
T ss_pred HhCCHHHHhhcCCCCHHHHHHHHHHHHhHH
Confidence 368999999999999999999999999987
No 15
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=95.20 E-value=0.0046 Score=38.90 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=22.6
Q ss_pred CCChhHHhcCCCchHHH-HHHHHHHhccccccc
Q 034973 2 DASMEDLAGCPGIVERK-VKCLYDTFHEPFKRV 33 (77)
Q Consensus 2 ~AS~E~Ls~CPG~G~~K-arrL~~afhePF~k~ 33 (77)
.||.|+|..+ +|... |++||+.||.+|...
T Consensus 46 ~AS~eEL~~v--ig~~~~A~~I~~~l~~~~~~~ 76 (84)
T 1z00_B 46 ALSQDELTSI--LGNAANAKQLYDFIHTSFAEV 76 (84)
T ss_dssp HSCHHHHHHH--HSCHHHHHHHHHHHTSBHHHH
T ss_pred HCCHHHHHHH--hCchHHHHHHHHHHHhhhhhh
Confidence 4777787777 77777 888888888877644
No 16
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=95.11 E-value=0.011 Score=48.70 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=29.0
Q ss_pred CCCChhHHhcCCCchHHHHHHHHHHhccccc
Q 034973 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFK 31 (77)
Q Consensus 1 i~AS~E~Ls~CPG~G~~KarrL~~afhePF~ 31 (77)
+.||.++|..+||||++.|..|++.|+.|..
T Consensus 534 ~~As~eeL~~I~GIG~~~A~sI~~ff~~~~~ 564 (667)
T 1dgs_A 534 LEASLEELIEVEEVGELTARAILETLKDPAF 564 (667)
T ss_dssp TTCCHHHHHTSTTCCHHHHHHHHHHHHCHHH
T ss_pred HhCCHHHHHhccCcCHHHHHHHHHHHhhHHH
Confidence 4799999999999999999999999999984
No 17
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=95.03 E-value=0.015 Score=41.31 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=26.4
Q ss_pred CCChhHHhcCCCchHHHHHHHHHHhcccc
Q 034973 2 DASMEDLAGCPGIVERKVKCLYDTFHEPF 30 (77)
Q Consensus 2 ~AS~E~Ls~CPG~G~~KarrL~~afhePF 30 (77)
.++.++|...||+|+++|+||+..|+.-+
T Consensus 104 ~~d~~~L~~vpGIG~K~A~rI~~elk~kl 132 (203)
T 1cuk_A 104 REEVGALVKLPGIGKKTAERLIVEMKDRF 132 (203)
T ss_dssp TTCHHHHHTSTTCCHHHHHHHHHHHHHHG
T ss_pred hCCHHHHhhCCCCCHHHHHHHHHHHHHhh
Confidence 57899999999999999999999998655
No 18
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=94.84 E-value=0.017 Score=33.98 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=21.2
Q ss_pred hhHHhcCCCchHHHHHHHHHHhcc
Q 034973 5 MEDLAGCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 5 ~E~Ls~CPG~G~~KarrL~~afhe 28 (77)
.+.|..+||+|++.+++|++-|..
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~Fgs 26 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHHVKN 26 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHHCSS
T ss_pred HhHHHcCCCCCHHHHHHHHHHcCC
Confidence 467999999999999999998864
No 19
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=94.27 E-value=0.028 Score=44.03 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=27.6
Q ss_pred CCCChhHHhcCCCchHHHHHHHHHHhccccc
Q 034973 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFK 31 (77)
Q Consensus 1 i~AS~E~Ls~CPG~G~~KarrL~~afhePF~ 31 (77)
|+||.|||....|+|+.+|+.+.+.+..---
T Consensus 342 l~AS~eEL~~VeGIGe~rAr~IregL~r~~~ 372 (377)
T 3c1y_A 342 SKASVEDLKKVEGIGEKRARAISESISSLKH 372 (377)
T ss_dssp TTCCHHHHTTSTTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHhccCccHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999876443
No 20
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=93.84 E-value=0.011 Score=48.64 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=0.0
Q ss_pred CCCChhHHhcCCCchHHHHHHHHHHhccccccc
Q 034973 1 MDASMEDLAGCPGIVERKVKCLYDTFHEPFKRV 33 (77)
Q Consensus 1 i~AS~E~Ls~CPG~G~~KarrL~~afhePF~k~ 33 (77)
+.||.|+|..+||||++.|+.|++.|+.|-.+.
T Consensus 556 ~~As~eeL~~I~GIG~~~A~sI~~ff~~~~n~~ 588 (615)
T 3sgi_A 556 AAASTDQLAAVEGVGPTIAAAVTEWFAVDWHRE 588 (615)
T ss_dssp ---------------------------------
T ss_pred HhCCHHHHhhCCCCCHHHHHHHHHHHcCHHHHH
Confidence 468999999999999999999999999997654
No 21
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=93.53 E-value=0.013 Score=42.79 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=0.0
Q ss_pred CCChhHHhcCCCchHHHHHHHHHHhc
Q 034973 2 DASMEDLAGCPGIVERKVKCLYDTFH 27 (77)
Q Consensus 2 ~AS~E~Ls~CPG~G~~KarrL~~afh 27 (77)
.||.|+|..+ |||++.|+.|++.||
T Consensus 201 ~As~eeL~~V-GIG~~~A~~I~~~f~ 225 (226)
T 3c65_A 201 EATVEELQRA-NIPRAVAEKIYEKLH 225 (226)
T ss_dssp --------------------------
T ss_pred hCCHHHHHHc-CCCHHHHHHHHHHhh
Confidence 5788888888 888888888888876
No 22
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=93.51 E-value=0.027 Score=45.77 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=27.7
Q ss_pred CCChhHHhcCCCchHHHHHHHHHHhccccc
Q 034973 2 DASMEDLAGCPGIVERKVKCLYDTFHEPFK 31 (77)
Q Consensus 2 ~AS~E~Ls~CPG~G~~KarrL~~afhePF~ 31 (77)
.||.|+|...||||++.|..|++.|+.|-.
T Consensus 540 ~a~~e~l~~i~giG~~~A~si~~ff~~~~n 569 (586)
T 4glx_A 540 AASIEELQKVPDVGIVVASHVHNFFAEESN 569 (586)
T ss_dssp HCCHHHHTTSTTCCHHHHHHHHHHHHSHHH
T ss_pred ccCHHHHhcCCCccHHHHHHHHHHHcCHHH
Confidence 589999999999999999999999998753
No 23
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=93.35 E-value=0.059 Score=33.43 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.8
Q ss_pred CChhHHhcCCCchHHHHHHHHHH
Q 034973 3 ASMEDLAGCPGIVERKVKCLYDT 25 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~~a 25 (77)
++.++|..+||||++++.+|+++
T Consensus 67 ~s~edL~~v~Gig~k~~~~l~~~ 89 (98)
T 2edu_A 67 SQVEDLERVEGITGKQMESFLKA 89 (98)
T ss_dssp SSGGGGGGSTTCCHHHHHHHHHH
T ss_pred CCHHHHHhCCCCCHHHHHHHHHC
Confidence 57899999999999999999775
No 24
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=93.03 E-value=0.028 Score=33.31 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=20.7
Q ss_pred hhHHhcCCCchHHHHHHHHHHhcc
Q 034973 5 MEDLAGCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 5 ~E~Ls~CPG~G~~KarrL~~afhe 28 (77)
...|..+||+|++.|++|++.|..
T Consensus 23 ~~~L~~I~gIG~~~A~~Ll~~fgs 46 (78)
T 1kft_A 23 TSSLETIEGVGPKRRQMLLKYMGG 46 (78)
T ss_dssp CCGGGGCTTCSSSHHHHHHHHHSC
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCC
Confidence 346889999999999999999854
No 25
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=92.71 E-value=0.076 Score=33.24 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=21.2
Q ss_pred hhHHhcCCCchHHHHHHHHHHhccc
Q 034973 5 MEDLAGCPGIVERKVKCLYDTFHEP 29 (77)
Q Consensus 5 ~E~Ls~CPG~G~~KarrL~~afheP 29 (77)
...|..+||+|++.+++|+.-|...
T Consensus 17 ~s~L~~IpGIG~kr~~~LL~~FgSl 41 (84)
T 1z00_B 17 QDFLLKMPGVNAKNCRSLMHHVKNI 41 (84)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHSSCH
T ss_pred HHHHHhCCCCCHHHHHHHHHHcCCH
Confidence 3568899999999999999988643
No 26
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=92.59 E-value=0.068 Score=38.47 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=25.8
Q ss_pred CCChhHHhcCCCchHHHHHHHHHHhcccc
Q 034973 2 DASMEDLAGCPGIVERKVKCLYDTFHEPF 30 (77)
Q Consensus 2 ~AS~E~Ls~CPG~G~~KarrL~~afhePF 30 (77)
..+.+.|...||||+++|.||...+..-+
T Consensus 119 ~~d~~~L~~vpGIG~KtA~rIi~elk~kl 147 (212)
T 2ztd_A 119 DGNVAALTRVPGIGKRGAERMVLELRDKV 147 (212)
T ss_dssp TTCHHHHHTSTTCCHHHHHHHHHHHTTTC
T ss_pred hCCHHHHhhCCCCCHHHHHHHHHHHHHhh
Confidence 45678999999999999999999998766
No 27
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=92.57 E-value=0.079 Score=31.97 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=20.7
Q ss_pred hhHHhcCCCchHHHHHHHHHHhcc
Q 034973 5 MEDLAGCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 5 ~E~Ls~CPG~G~~KarrL~~afhe 28 (77)
...|..+||+|++.|++|++.|..
T Consensus 18 ~~~L~~IpgIG~~~A~~Ll~~fgs 41 (89)
T 1z00_A 18 TECLTTVKSVNKTDSQTLLTTFGS 41 (89)
T ss_dssp HHHHTTSSSCCHHHHHHHHHHTCB
T ss_pred HHHHHcCCCCCHHHHHHHHHHCCC
Confidence 356889999999999999998854
No 28
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=92.52 E-value=0.051 Score=40.68 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.4
Q ss_pred ChhHHhcCCCchHHHHHHHHHH
Q 034973 4 SMEDLAGCPGIVERKVKCLYDT 25 (77)
Q Consensus 4 S~E~Ls~CPG~G~~KarrL~~a 25 (77)
+..+|..+||+||++|++||+.
T Consensus 96 ~l~~l~~V~GiGpk~a~~l~~~ 117 (335)
T 2fmp_A 96 SINFLTRVSGIGPSAARKFVDE 117 (335)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHT
T ss_pred HHHHHhCCCCCCHHHHHHHHHc
Confidence 4578999999999999999875
No 29
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=92.07 E-value=0.1 Score=29.74 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=20.1
Q ss_pred hHHhcCCCchHHHHHHHHHHhcc
Q 034973 6 EDLAGCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 6 E~Ls~CPG~G~~KarrL~~afhe 28 (77)
..|..+||+|++.|++|++.|..
T Consensus 14 ~~L~~i~giG~~~a~~Ll~~fgs 36 (75)
T 1x2i_A 14 LIVEGLPHVSATLARRLLKHFGS 36 (75)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHCS
T ss_pred HHHcCCCCCCHHHHHHHHHHcCC
Confidence 35889999999999999998854
No 30
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=91.90 E-value=0.13 Score=30.52 Aligned_cols=23 Identities=22% Similarity=0.551 Sum_probs=19.3
Q ss_pred CChhHHhcCCCchHHHHHHHHHH
Q 034973 3 ASMEDLAGCPGIVERKVKCLYDT 25 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~~a 25 (77)
.|.++|..++|||+.|+++.-+.
T Consensus 44 ~t~~eL~~i~Gvg~~k~~~yG~~ 66 (77)
T 2rhf_A 44 RTLAELAEVPGLGEKRIEAYGER 66 (77)
T ss_dssp CSHHHHTTSTTTCHHHHHHHHHH
T ss_pred CCHHHHhhCCCCCHHHHHHHHHH
Confidence 47899999999999999885443
No 31
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=91.76 E-value=0.11 Score=31.54 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.0
Q ss_pred hHHhcCCCchHHHHHHHHHHhcc
Q 034973 6 EDLAGCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 6 E~Ls~CPG~G~~KarrL~~afhe 28 (77)
..|..+||+|++.|++|++.|..
T Consensus 32 ~~L~~IpgIG~~~A~~Ll~~fgs 54 (91)
T 2a1j_B 32 ECLTTVKSVNKTDSQTLLTTFGS 54 (91)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHSS
T ss_pred HHHHcCCCCCHHHHHHHHHHCCC
Confidence 35778999999999999998864
No 32
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=91.21 E-value=0.039 Score=40.29 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=0.0
Q ss_pred CCChhHHhcCCCchHHHHHHHHHHhcc
Q 034973 2 DASMEDLAGCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 2 ~AS~E~Ls~CPG~G~~KarrL~~afhe 28 (77)
.|+.++|+..||||+++|.+|++.++.
T Consensus 44 ~a~~~eL~~v~GIG~ktAe~I~~~l~~ 70 (241)
T 1vq8_Y 44 GADQSALADVSGIGNALAARIKADVGG 70 (241)
T ss_dssp ---------------------------
T ss_pred hCCHHHHHhccCCCHHHHHHHHHHHHH
Confidence 478888999999999999999888875
No 33
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=91.19 E-value=0.12 Score=33.21 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=20.5
Q ss_pred CChhHHhcCCCchHHHHHHHHHHhcc
Q 034973 3 ASMEDLAGCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~~afhe 28 (77)
.|.++|..++|+|+.|+++. +.|=+
T Consensus 54 ~t~~eL~~I~Gvg~~K~~~y-~~~L~ 78 (103)
T 2e1f_A 54 TTVENVKRIDGVSEGKAAML-APLLE 78 (103)
T ss_dssp CSHHHHTTSTTCCHHHHHHT-HHHHH
T ss_pred CCHHHHhcCCCCCHHHHHHH-HHHHH
Confidence 47899999999999999985 55443
No 34
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=91.04 E-value=0.1 Score=34.36 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=24.4
Q ss_pred CCChhHHhcCCCchHHHHHHHHHHhcc
Q 034973 2 DASMEDLAGCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 2 ~AS~E~Ls~CPG~G~~KarrL~~afhe 28 (77)
.|++++|...+|||+.||.+|.++-++
T Consensus 54 ~a~~~eL~~i~GIse~ka~kIi~aA~k 80 (114)
T 1b22_A 54 YAPKKELINIKGISEAKADKILAEAAK 80 (114)
T ss_dssp SSBHHHHHTTTTCSTTHHHHHHHHHHH
T ss_pred hCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 578999999999999999999888765
No 35
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=90.76 E-value=0.2 Score=30.81 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=18.7
Q ss_pred CChhHHhcCCCchHHHHHHHHH
Q 034973 3 ASMEDLAGCPGIVERKVKCLYD 24 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~~ 24 (77)
.|.++|..++|||+.|+++.-+
T Consensus 52 ~t~~eL~~i~Gvg~~k~~~yG~ 73 (89)
T 1wud_A 52 ITASEMLSVNGVGMRKLERFGK 73 (89)
T ss_dssp CSHHHHHTSTTCCHHHHHHHHH
T ss_pred CCHHHHhhCCCCCHHHHHHHHH
Confidence 4789999999999999988533
No 36
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=90.76 E-value=0.12 Score=39.56 Aligned_cols=21 Identities=5% Similarity=0.104 Sum_probs=18.4
Q ss_pred hhHHhcCCCchHHHHHHHHHH
Q 034973 5 MEDLAGCPGIVERKVKCLYDT 25 (77)
Q Consensus 5 ~E~Ls~CPG~G~~KarrL~~a 25 (77)
..+|..+||+|+++|++||+.
T Consensus 120 l~~l~~I~GvGpk~a~~ly~~ 140 (381)
T 1jms_A 120 FKLFTSVFGVGLKTAEKWFRM 140 (381)
T ss_dssp HHHHHTSTTCCHHHHHHHHHT
T ss_pred HHHHHccCCCCHHHHHHHHHc
Confidence 357889999999999999875
No 37
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=90.61 E-value=0.14 Score=38.75 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=18.5
Q ss_pred hhHHhcCCCchHHHHHHHHHH
Q 034973 5 MEDLAGCPGIVERKVKCLYDT 25 (77)
Q Consensus 5 ~E~Ls~CPG~G~~KarrL~~a 25 (77)
..+|..+||+|+++|++||+.
T Consensus 101 l~~l~~I~GvG~kta~~l~~~ 121 (360)
T 2ihm_A 101 MKLFTQVFGVGVKTANRWYQE 121 (360)
T ss_dssp HHHHHTSTTCCHHHHHHHHHT
T ss_pred HHHHhCCCCCCHHHHHHHHHc
Confidence 457889999999999999875
No 38
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=90.45 E-value=0.05 Score=39.68 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=0.0
Q ss_pred CChhHHhcCCCchHHHHHHHHHH
Q 034973 3 ASMEDLAGCPGIVERKVKCLYDT 25 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~~a 25 (77)
|+..+|..+||+||++|++|++.
T Consensus 12 a~~~~L~~IpGIGpk~a~~Ll~~ 34 (241)
T 1vq8_Y 12 EEYTELTDISGVGPSKAESLREA 34 (241)
T ss_dssp -----------------------
T ss_pred cchhHHhcCCCCCHHHHHHHHHc
Confidence 45678999999999999999997
No 39
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=90.29 E-value=0.17 Score=42.43 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=26.2
Q ss_pred CCChhHHhcCCCchHHHHHHHHHHh--ccccccc
Q 034973 2 DASMEDLAGCPGIVERKVKCLYDTF--HEPFKRV 33 (77)
Q Consensus 2 ~AS~E~Ls~CPG~G~~KarrL~~af--hePF~k~ 33 (77)
.||.++|..+||||++||++|.+-- |-||...
T Consensus 504 tAs~~~L~~v~GiG~~~A~~Iv~yR~~~G~f~sr 537 (785)
T 3bzc_A 504 TASAALLARISGLNSTLAQNIVAHRDANGAFRTR 537 (785)
T ss_dssp TCCHHHHHTSTTCCHHHHHHHHHHHHHHCCCSSG
T ss_pred cCCHHHHhhcCCCCHHHHHHHHHHHHhcCCCCCH
Confidence 4899999999999999999986643 4588543
No 40
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=89.77 E-value=0.2 Score=30.43 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=19.2
Q ss_pred CChhHHhcCCCchHHHHHHHHHH
Q 034973 3 ASMEDLAGCPGIVERKVKCLYDT 25 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~~a 25 (77)
.|.++|..++|+|+.|+.+.-+.
T Consensus 46 ~t~~eL~~i~Gvg~~k~~~yG~~ 68 (85)
T 2kv2_A 46 SDPEVLLQIDGVTEDKLEKYGAE 68 (85)
T ss_dssp SCHHHHHTSSSCCHHHHHHTHHH
T ss_pred CCHHHHhhCCCCCHHHHHHHHHH
Confidence 47899999999999999876443
No 41
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=89.69 E-value=0.18 Score=37.71 Aligned_cols=18 Identities=11% Similarity=0.211 Sum_probs=15.9
Q ss_pred HhcCCCchHHHHHHHHHH
Q 034973 8 LAGCPGIVERKVKCLYDT 25 (77)
Q Consensus 8 Ls~CPG~G~~KarrL~~a 25 (77)
|..+||+||++|++||+.
T Consensus 98 l~~v~GiG~k~a~~l~~~ 115 (335)
T 2bcq_A 98 FSNIWGAGTKTAQMWYQQ 115 (335)
T ss_dssp HHTSTTCCHHHHHHHHHT
T ss_pred HhcCCCcCHHHHHHHHHc
Confidence 369999999999999874
No 42
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=89.19 E-value=0.18 Score=37.02 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=16.2
Q ss_pred hHHhcCCCchHHHHHHH
Q 034973 6 EDLAGCPGIVERKVKCL 22 (77)
Q Consensus 6 E~Ls~CPG~G~~KarrL 22 (77)
++|+.+||+|++-|+||
T Consensus 26 ~~l~~LPGIG~KsA~Rl 42 (212)
T 3vdp_A 26 EELSKLPGIGPKTAQRL 42 (212)
T ss_dssp HHHHTSTTCCHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHH
Confidence 68999999999999999
No 43
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=88.20 E-value=0.23 Score=36.90 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=16.1
Q ss_pred hHHhcCCCchHHHHHHH
Q 034973 6 EDLAGCPGIVERKVKCL 22 (77)
Q Consensus 6 E~Ls~CPG~G~~KarrL 22 (77)
+.|+.+||+|++-|+||
T Consensus 12 ~~l~~LPGIG~KSA~Rl 28 (228)
T 1vdd_A 12 RELSRLPGIGPKSAQRL 28 (228)
T ss_dssp HHHHTSTTCCHHHHHHH
T ss_pred HHHhHCCCCCHHHHHHH
Confidence 68999999999999999
No 44
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=86.24 E-value=0.22 Score=43.05 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=24.3
Q ss_pred ChhHHhcCCCchHHHHHHHHHHh---ccccc
Q 034973 4 SMEDLAGCPGIVERKVKCLYDTF---HEPFK 31 (77)
Q Consensus 4 S~E~Ls~CPG~G~~KarrL~~af---hePF~ 31 (77)
|...|..+|||||+||+.|.+.. |-||.
T Consensus 715 s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~ 745 (1030)
T 3psf_A 715 YASALKYISGFGKRKAIDFLQSLQRLNEPLL 745 (1030)
T ss_dssp HHTTGGGSTTCCHHHHHHHHHHHHHTCSCCC
T ss_pred CHHHHhhCCCCCHHHHHHHHHHHHHhCCCCC
Confidence 67889999999999999998876 67883
No 45
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=86.24 E-value=0.47 Score=30.15 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=18.7
Q ss_pred CChhHHhcCCCchHHHHHHHHH
Q 034973 3 ASMEDLAGCPGIVERKVKCLYD 24 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~~ 24 (77)
.|.++|..++|+|+.|+++.-+
T Consensus 61 ~t~~eL~~I~Gvg~~k~~~yG~ 82 (101)
T 2rrd_A 61 SDPEVLLQIDGVTEDKLEKYGA 82 (101)
T ss_dssp CCHHHHHTSTTCCHHHHHHTHH
T ss_pred CCHHHHhhCCCCCHHHHHHHHH
Confidence 4789999999999999987533
No 46
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=86.23 E-value=0.41 Score=33.61 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=20.1
Q ss_pred HHhcCCCchHHHHHHHHHHhcc
Q 034973 7 DLAGCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 7 ~Ls~CPG~G~~KarrL~~afhe 28 (77)
.|...||+||+.|.+|++.|..
T Consensus 73 ~L~~v~GIGpk~A~~iL~~f~~ 94 (191)
T 1ixr_A 73 LLLSVSGVGPKVALALLSALPP 94 (191)
T ss_dssp HHHSSSCCCHHHHHHHHHHSCH
T ss_pred HHhcCCCcCHHHHHHHHHhCCh
Confidence 5889999999999999999876
No 47
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=85.28 E-value=0.42 Score=37.71 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=18.9
Q ss_pred hhHHhcCCCchHHHHHHHHHH
Q 034973 5 MEDLAGCPGIVERKVKCLYDT 25 (77)
Q Consensus 5 ~E~Ls~CPG~G~~KarrL~~a 25 (77)
..+|..+||+||++|++||+.
T Consensus 96 ~~~L~~v~GVGpk~A~~i~~~ 116 (578)
T 2w9m_A 96 LLDLLGVRGLGPKKIRSLWLA 116 (578)
T ss_dssp HHHHTTSTTCCHHHHHHHHHT
T ss_pred HHHHhCCCCcCHHHHHHHHHc
Confidence 467999999999999999986
No 48
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=84.35 E-value=0.5 Score=33.36 Aligned_cols=22 Identities=9% Similarity=0.184 Sum_probs=20.0
Q ss_pred HHhcCCCchHHHHHHHHHHhcc
Q 034973 7 DLAGCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 7 ~Ls~CPG~G~~KarrL~~afhe 28 (77)
.|...||+||+.|.+|++.|..
T Consensus 74 ~L~~V~GIGpk~A~~iL~~f~~ 95 (203)
T 1cuk_A 74 ELIKTNGVGPKLALAILSGMSA 95 (203)
T ss_dssp HHHHSSSCCHHHHHHHHHHSCH
T ss_pred HHhcCCCcCHHHHHHHHhhCCh
Confidence 5888999999999999998876
No 49
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=84.15 E-value=0.56 Score=32.08 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.5
Q ss_pred HHhcCCCchHHHHHHHHHHhccc
Q 034973 7 DLAGCPGIVERKVKCLYDTFHEP 29 (77)
Q Consensus 7 ~Ls~CPG~G~~KarrL~~afheP 29 (77)
.|..+||+|++.|++|.+.|..+
T Consensus 163 ~L~~i~gVg~~~a~~Ll~~fgs~ 185 (219)
T 2bgw_A 163 ILQSFPGIGRRTAERILERFGSL 185 (219)
T ss_dssp HHHTSTTCCHHHHHHHHHHHSSH
T ss_pred HHhcCCCCCHHHHHHHHHHcCCH
Confidence 47789999999999999998873
No 50
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=83.69 E-value=0.18 Score=32.93 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=20.3
Q ss_pred CChhHHhcCCCchHHHHHHHHHHhcc
Q 034973 3 ASMEDLAGCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~~afhe 28 (77)
.|.++|..++|+|+.|+++. +.|=+
T Consensus 61 ~t~~eL~~I~Gvg~~K~~~y-~~~L~ 85 (113)
T 2dgz_A 61 TTVENVKRIDGVSEGKAAML-APLWE 85 (113)
T ss_dssp CSHHHHHHSSSCCTTGGGGG-HHHHH
T ss_pred CCHHHHHhCCCCCHHHHHHH-HHHHH
Confidence 47899999999999999876 55443
No 51
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=83.43 E-value=0.62 Score=37.87 Aligned_cols=26 Identities=8% Similarity=0.206 Sum_probs=23.1
Q ss_pred CChhHHhcCCCchHHHHHHHHHHhcc
Q 034973 3 ASMEDLAGCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~~afhe 28 (77)
-+.++|..++|||++.|.+|++++..
T Consensus 477 L~~~~L~~l~g~geKsa~nL~~aIe~ 502 (586)
T 4glx_A 477 LTAGKLTGLERMGPKSAQNVVNALEK 502 (586)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHhcccCccHHHHHHHHHHHHH
Confidence 46799999999999999999998853
No 52
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=83.18 E-value=0.36 Score=42.41 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=24.2
Q ss_pred ChhHHhcCCCchHHHHHHHHHHh---ccccc
Q 034973 4 SMEDLAGCPGIVERKVKCLYDTF---HEPFK 31 (77)
Q Consensus 4 S~E~Ls~CPG~G~~KarrL~~af---hePF~ 31 (77)
|.+.|+.+|||||+||+.|.+.. +-||.
T Consensus 712 s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~ 742 (1219)
T 3psi_A 712 YASALKYISGFGKRKAIDFLQSLQRLNEPLL 742 (1219)
T ss_dssp HHTTGGGSTTCCHHHHHHHHHHHHHHCSCCC
T ss_pred CHHHHHhCCCCCHHHHHHHHHHHHHhCCCCC
Confidence 57889999999999999998776 67883
No 53
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=82.64 E-value=0.92 Score=27.76 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=24.2
Q ss_pred CCChhHHhcCCCchHHHHHHHHHHhcc
Q 034973 2 DASMEDLAGCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 2 ~AS~E~Ls~CPG~G~~KarrL~~afhe 28 (77)
.-|.+||..++|||++-+..|.+.+.+
T Consensus 37 ~~s~~dLlki~n~G~kSl~EI~~~L~~ 63 (73)
T 1z3e_B 37 NKTEEDMMKVRNLGRKSLEEVKAKLEE 63 (73)
T ss_dssp TSCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999875
No 54
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=82.43 E-value=0.66 Score=36.44 Aligned_cols=22 Identities=18% Similarity=0.528 Sum_probs=19.1
Q ss_pred hhHHhcCCCchHHHHHHHHHHh
Q 034973 5 MEDLAGCPGIVERKVKCLYDTF 26 (77)
Q Consensus 5 ~E~Ls~CPG~G~~KarrL~~af 26 (77)
..+|..+||+||++|.+||+.+
T Consensus 92 ~~~l~~v~GvGpk~A~~~~~~l 113 (575)
T 3b0x_A 92 VLEVMEVPGVGPKTARLLYEGL 113 (575)
T ss_dssp HHHHHTSTTTCHHHHHHHHHTS
T ss_pred HHHHhcCCCcCHHHHHHHHHhc
Confidence 4578999999999999999863
No 55
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=81.92 E-value=0.96 Score=33.81 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=23.1
Q ss_pred CChhHHhcCCCchHHHHHHHHHHhcc
Q 034973 3 ASMEDLAGCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~~afhe 28 (77)
++.++|..+||||+..|..+.+.+..
T Consensus 54 ~~~~~l~~lpGIG~~~A~kI~E~l~t 79 (335)
T 2bcq_A 54 TSYQEACSIPGIGKRMAEKIIEILES 79 (335)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred cCHHHHhcCCCccHHHHHHHHHHHHc
Confidence 46788999999999999999888775
No 56
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=80.81 E-value=1.1 Score=28.00 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=21.9
Q ss_pred CChhHHhcCCCchHHHHHHHHHHhcc
Q 034973 3 ASMEDLAGCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~~afhe 28 (77)
.|..|+..++|||++=+++|-+.+.+
T Consensus 55 ~s~~e~~~L~giG~ki~~~L~e~L~~ 80 (87)
T 2kp7_A 55 RSGKEAKILQHFGDRLCRMLDEKLKQ 80 (87)
T ss_dssp CSHHHHHTCTTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHhhcccHHHHHHHHHHHHH
Confidence 36789999999999999999877643
No 57
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=79.33 E-value=1.5 Score=26.31 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=24.6
Q ss_pred CCChhHHhcCCCchHHHHHHHHHHhcc-ccc
Q 034973 2 DASMEDLAGCPGIVERKVKCLYDTFHE-PFK 31 (77)
Q Consensus 2 ~AS~E~Ls~CPG~G~~KarrL~~afhe-PF~ 31 (77)
.++.++|...+||++.||..|..+-+. ++.
T Consensus 36 ~~~~~eL~~i~gise~kA~~ii~aAr~~~w~ 66 (70)
T 1wcn_A 36 EQGIDDLADIEGLTDEKAGALIMAARNICWF 66 (70)
T ss_dssp TSCHHHHHTSSSCCHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHccCCCHHHHHHHHHHHHHccCc
Confidence 367889999999999999999888776 443
No 58
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=79.15 E-value=1.2 Score=31.95 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.1
Q ss_pred HHhcCCCchHHHHHHHHHHhccc
Q 034973 7 DLAGCPGIVERKVKCLYDTFHEP 29 (77)
Q Consensus 7 ~Ls~CPG~G~~KarrL~~afheP 29 (77)
.|...+|+||+.|.+|.+.|...
T Consensus 89 ~L~sv~GIGpk~A~~Ils~~~~~ 111 (212)
T 2ztd_A 89 TLLSVSGVGPRLAMAALAVHDAP 111 (212)
T ss_dssp HHHTSTTCCHHHHHHHHHHSCHH
T ss_pred HhcCcCCcCHHHHHHHHHhCCHH
Confidence 47889999999999999988764
No 59
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=78.73 E-value=0.51 Score=34.34 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=13.0
Q ss_pred HHhcCCCchHHHHHHHHHHh
Q 034973 7 DLAGCPGIVERKVKCLYDTF 26 (77)
Q Consensus 7 ~Ls~CPG~G~~KarrL~~af 26 (77)
.|..+||+|++.++.|.+.|
T Consensus 169 ~LdgIpGIG~k~ak~Ll~~F 188 (220)
T 2nrt_A 169 VLDNVPGIGPIRKKKLIEHF 188 (220)
T ss_dssp HHTTSTTCCHHHHHHHHHHH
T ss_pred cccCCCCcCHHHHHHHHHHc
Confidence 45667777777777766554
No 60
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=78.46 E-value=1.6 Score=27.91 Aligned_cols=26 Identities=31% Similarity=0.586 Sum_probs=21.8
Q ss_pred CChhHHhcCCCchHHHHHHHHHHhcc
Q 034973 3 ASMEDLAGCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~~afhe 28 (77)
.|.+||...+|||+++..+|.+-+..
T Consensus 49 ~s~edL~~V~Gig~~~~e~l~~~l~~ 74 (97)
T 3arc_U 49 ESVEDVLNIPGLTERQKQILRENLEH 74 (97)
T ss_dssp SSGGGGGGCTTCCHHHHHHHHHTGGG
T ss_pred CCHHHHHhccCCCHHHHHHHHHHhce
Confidence 47899999999999999998765543
No 61
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=78.06 E-value=2 Score=26.85 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=24.1
Q ss_pred CCChhHHhcCCCchHHHHHHHHHHhcc
Q 034973 2 DASMEDLAGCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 2 ~AS~E~Ls~CPG~G~~KarrL~~afhe 28 (77)
.-|.+||..+.|||++-+..|.+.+.+
T Consensus 44 ~~se~dLlki~n~G~kSl~EI~~~L~e 70 (79)
T 3gfk_B 44 NKTEEDMMKVRNLGRKSLEEVKAKLEE 70 (79)
T ss_dssp TCCHHHHTTSTTCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHcCCCCHhHHHHHHHHHHH
Confidence 458899999999999999999988875
No 62
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=77.32 E-value=1.6 Score=32.51 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=22.5
Q ss_pred CChhHHhcCCCchHHHHHHHHHHhcc
Q 034973 3 ASMEDLAGCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~~afhe 28 (77)
++.++|..+||||+..|..+.+.+..
T Consensus 54 ~~~~~l~~LpGIG~~~A~kI~E~l~t 79 (335)
T 2fmp_A 54 KSGAEAKKLPGVGTKIAEKIDEFLAT 79 (335)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred cCHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 46788999999999999999887654
No 63
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=75.98 E-value=2.1 Score=27.16 Aligned_cols=27 Identities=11% Similarity=0.199 Sum_probs=24.4
Q ss_pred CChhHHhcCCCchHHHHHHHHHHhccc
Q 034973 3 ASMEDLAGCPGIVERKVKCLYDTFHEP 29 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~~afheP 29 (77)
-|.+||..++|||++-+..|.+.+.+=
T Consensus 41 ~se~dLlki~n~G~KSl~EI~~~L~~~ 67 (86)
T 3k4g_A 41 RTEVELLXTPNLGXXSLTEIXDVLASR 67 (86)
T ss_dssp SCHHHHHTSTTCCHHHHHHHHHHHHTT
T ss_pred CCHHHHhhccccCcccHHHHHHHHHHc
Confidence 478999999999999999999998764
No 64
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=74.87 E-value=2.7 Score=29.17 Aligned_cols=27 Identities=15% Similarity=0.340 Sum_probs=22.0
Q ss_pred CChhHHhcCCCchHHHHHHHH-HHhccc
Q 034973 3 ASMEDLAGCPGIVERKVKCLY-DTFHEP 29 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~-~afheP 29 (77)
.+.++|..+||+|+.-|.-+. -+|+.|
T Consensus 106 ~~~~~L~~lpGIG~~TA~~il~~a~~~~ 133 (225)
T 1kg2_A 106 ETFEEVAALPGVGRSTAGAILSLSLGKH 133 (225)
T ss_dssp CSHHHHHTSTTCCHHHHHHHHHHHHCCS
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHhCCCC
Confidence 357899999999999988764 467776
No 65
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=74.65 E-value=1.5 Score=36.62 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=21.0
Q ss_pred HHhcCCCchHHHHHHHHHHhccccc
Q 034973 7 DLAGCPGIVERKVKCLYDTFHEPFK 31 (77)
Q Consensus 7 ~Ls~CPG~G~~KarrL~~afhePF~ 31 (77)
-|+.+|||||.+|++|++-|-.--.
T Consensus 469 mLtAIaGIGp~tAeRLLEkFGSVe~ 493 (685)
T 4gfj_A 469 SLISIRGIDRERAERLLKKYGGYSK 493 (685)
T ss_dssp HHHTSTTCCHHHHHHHHHHHTSHHH
T ss_pred eeeccCCCCHHHHHHHHHHhcCHHH
Confidence 4788999999999999999875443
No 66
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=74.60 E-value=1.9 Score=32.47 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=22.4
Q ss_pred CChhHHhcCCCchHHHHHHHHHHhcc
Q 034973 3 ASMEDLAGCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~~afhe 28 (77)
++.++|..+||||+..|..+.+.+..
T Consensus 58 ~~~~~l~~lpGIG~~~A~kI~E~l~t 83 (360)
T 2ihm_A 58 ASLSQLHGLPYFGEHSTRVIQELLEH 83 (360)
T ss_dssp CSGGGGTTCTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHhcCCCCCHHHHHHHHHHHHc
Confidence 46778999999999999999887664
No 67
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=73.93 E-value=2.5 Score=29.48 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=21.7
Q ss_pred CChhHHhcCCCchHHHHHHHHH-Hhccc
Q 034973 3 ASMEDLAGCPGIVERKVKCLYD-TFHEP 29 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~~-afheP 29 (77)
...++|..+||+|+.-|.-+.- +|+.|
T Consensus 118 ~~~~~L~~lpGIG~kTA~~il~~a~~~~ 145 (218)
T 1pu6_A 118 VTREWLLDQKGIGKESADAILCYACAKE 145 (218)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHTTCCS
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHHCCCC
Confidence 3578899999999999988754 66665
No 68
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=73.24 E-value=1.9 Score=31.29 Aligned_cols=14 Identities=14% Similarity=0.152 Sum_probs=9.5
Q ss_pred chH-HHHHHHHHHhc
Q 034973 14 IVE-RKVKCLYDTFH 27 (77)
Q Consensus 14 ~G~-~KarrL~~afh 27 (77)
||+ +.|+.|++.|+
T Consensus 206 IG~~~~A~~I~~~f~ 220 (220)
T 2nrt_A 206 IGSTEIARRVLDILG 220 (220)
T ss_dssp HTCHHHHHHHHHHC-
T ss_pred hChHHHHHHHHHHhC
Confidence 677 77777777663
No 69
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=72.06 E-value=3.4 Score=24.89 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.8
Q ss_pred CChhHHhcCCCchHHHHHHHHHHhc
Q 034973 3 ASMEDLAGCPGIVERKVKCLYDTFH 27 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~~afh 27 (77)
++.++|...+||.+.||..|.+.-+
T Consensus 36 ~~~~eL~~I~G~dE~~a~~l~~~A~ 60 (70)
T 1u9l_A 36 VPMKELLEIEGLDEPTVEALRERAK 60 (70)
T ss_dssp SCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred CCHHHHhhccCCCHHHHHHHHHHHH
Confidence 6889999999999999999977644
No 70
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=71.66 E-value=0.8 Score=33.29 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=0.0
Q ss_pred hhHHhcCCCchHHHHHHHHHHhcc
Q 034973 5 MEDLAGCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 5 ~E~Ls~CPG~G~~KarrL~~afhe 28 (77)
...|..+||+|++.+++|.+.|..
T Consensus 172 ~s~L~~IpGIG~k~ak~Ll~~FGS 195 (226)
T 3c65_A 172 HSVLDDIPGVGEKRKKALLNYFGS 195 (226)
T ss_dssp ------------------------
T ss_pred cccccccCCCCHHHHHHHHHHhCC
Confidence 456889999999999999999865
No 71
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=71.01 E-value=2.6 Score=34.87 Aligned_cols=27 Identities=7% Similarity=0.204 Sum_probs=23.2
Q ss_pred CCChhHHhcCCCchHHHHHHHHHHhcc
Q 034973 2 DASMEDLAGCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 2 ~AS~E~Ls~CPG~G~~KarrL~~afhe 28 (77)
.++.++|..++|||++.+.+|++++..
T Consensus 476 ~L~~~~L~~l~gfG~Ksa~nLl~aIe~ 502 (671)
T 2owo_A 476 KLTAGKLTGLERMGPKSAQNVVNALEK 502 (671)
T ss_dssp TCCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred hhCHHHhhcccccchhHHHHHHHHHHH
Confidence 356789999999999999999988764
No 72
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=70.53 E-value=3 Score=27.02 Aligned_cols=28 Identities=11% Similarity=0.217 Sum_probs=24.9
Q ss_pred CCChhHHhcCCCchHHHHHHHHHHhccc
Q 034973 2 DASMEDLAGCPGIVERKVKCLYDTFHEP 29 (77)
Q Consensus 2 ~AS~E~Ls~CPG~G~~KarrL~~afheP 29 (77)
.-|.+||..++|||++-+..|.+.+.+-
T Consensus 52 ~~se~dLlki~n~G~KSl~EI~~~L~~~ 79 (98)
T 1coo_A 52 QRTEVELLKTPNLGKKSLTEIKDVLASR 79 (98)
T ss_dssp TSCHHHHTTSTTCCHHHHHHHHHHHHHT
T ss_pred hCCHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 3578999999999999999999999864
No 73
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=70.14 E-value=2.3 Score=33.00 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=20.0
Q ss_pred HhcCCCchHHHHHHHHHHhccc
Q 034973 8 LAGCPGIVERKVKCLYDTFHEP 29 (77)
Q Consensus 8 Ls~CPG~G~~KarrL~~afheP 29 (77)
|+.+||+|+.+.++|++.|..+
T Consensus 28 L~~~~gvG~~~~~~Ll~~fgs~ 49 (382)
T 3maj_A 28 LIRAENVGPRTFRSLINHFGSA 49 (382)
T ss_dssp HHTSTTCCHHHHHHHHHHHSSH
T ss_pred HHcCCCCCHHHHHHHHHHcCCH
Confidence 7899999999999999998765
No 74
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=69.09 E-value=2.9 Score=27.15 Aligned_cols=18 Identities=28% Similarity=0.163 Sum_probs=16.2
Q ss_pred HHhcCCCchHHHHHHHHH
Q 034973 7 DLAGCPGIVERKVKCLYD 24 (77)
Q Consensus 7 ~Ls~CPG~G~~KarrL~~ 24 (77)
++..+||||+.=+++|-+
T Consensus 19 ~V~evpGIG~~~~~~L~~ 36 (89)
T 1ci4_A 19 PVGSLAGIGEVLGKKLEE 36 (89)
T ss_dssp CGGGSTTCCHHHHHHHHH
T ss_pred CcccCCCcCHHHHHHHHH
Confidence 578899999999999966
No 75
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=68.92 E-value=2.2 Score=27.02 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=18.4
Q ss_pred ChhHHhcCCCchHHHHHHHHH
Q 034973 4 SMEDLAGCPGIVERKVKCLYD 24 (77)
Q Consensus 4 S~E~Ls~CPG~G~~KarrL~~ 24 (77)
|+.+|..+|+||++=++.|.+
T Consensus 2 ~~~~L~~LPNiG~~~e~~L~~ 22 (93)
T 3bqs_A 2 SLANLSELPNIGKVLEQDLIK 22 (93)
T ss_dssp CCSCGGGSTTCCHHHHHHHHH
T ss_pred ChHHhhcCCCCCHHHHHHHHH
Confidence 678999999999999988854
No 76
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=68.45 E-value=2.1 Score=27.24 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=17.7
Q ss_pred ChhHHhcCCCchHHHHHHHHH
Q 034973 4 SMEDLAGCPGIVERKVKCLYD 24 (77)
Q Consensus 4 S~E~Ls~CPG~G~~KarrL~~ 24 (77)
||.+|..+|+||+.=++.|..
T Consensus 2 sm~~L~dLPNig~~~e~~L~~ 22 (93)
T 3mab_A 2 SLANLSELPNIGKVLEQDLIK 22 (93)
T ss_dssp -CCCGGGSTTCCHHHHHHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHH
Confidence 678999999999999888854
No 77
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=66.43 E-value=4.4 Score=28.72 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=18.0
Q ss_pred CChhHHhcCCCchHHHHHHHHHHhc
Q 034973 3 ASMEDLAGCPGIVERKVKCLYDTFH 27 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~~afh 27 (77)
++.|+|..| |||.+||++|.++..
T Consensus 104 ~~~e~Lr~~-Gl~~~Ka~~l~~~A~ 127 (232)
T 4b21_A 104 TDVETLHEC-GFSKLKSQEIHIVAE 127 (232)
T ss_dssp SCHHHHHTT-TCCHHHHHHHHHHHH
T ss_pred CCHHHHHHc-CCcHHHHHHHHHHHH
Confidence 455666543 999999999987654
No 78
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=66.37 E-value=3.5 Score=28.41 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=18.9
Q ss_pred ChhHHhcCCCchHHHHHHHHHH
Q 034973 4 SMEDLAGCPGIVERKVKCLYDT 25 (77)
Q Consensus 4 S~E~Ls~CPG~G~~KarrL~~a 25 (77)
..++|..+||+|+.-|.-+.-.
T Consensus 115 ~~~~L~~lpGIG~kTA~~il~~ 136 (207)
T 3fhg_A 115 ARERLLNIKGIGMQEASHFLRN 136 (207)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHcCCCcCHHHHHHHHHH
Confidence 4678999999999999998763
No 79
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=65.04 E-value=4.8 Score=27.88 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=21.7
Q ss_pred CChhHHhcCCCchHHHHHHHH-HHhccc
Q 034973 3 ASMEDLAGCPGIVERKVKCLY-DTFHEP 29 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~-~afheP 29 (77)
.+.++|..+||+|+.-|.-+. -+|+.|
T Consensus 112 ~~~~~L~~lpGIG~~TA~~il~~~~~~~ 139 (221)
T 1kea_A 112 RNRKAILDLPGVGKYTCAAVMCLAFGKK 139 (221)
T ss_dssp SCHHHHHTSTTCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHhcCCC
Confidence 457899999999999988764 466666
No 80
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=64.14 E-value=3.1 Score=30.87 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=19.1
Q ss_pred hhHHhcCCCchHHHHHHHHHHhcc
Q 034973 5 MEDLAGCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 5 ~E~Ls~CPG~G~~KarrL~~afhe 28 (77)
.+-+-.+||+||+.|..|..-|..
T Consensus 202 sDniPGVpGIG~KTA~kLL~~~gs 225 (290)
T 1exn_A 202 GDNIRGVEGIGAKRGYNIIREFGN 225 (290)
T ss_dssp GGTBCCCTTCCHHHHHHHHHHHCS
T ss_pred cCCCCCCCcCCHhHHHHHHHHcCC
Confidence 344667999999999999887654
No 81
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=63.35 E-value=4.2 Score=30.95 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=21.9
Q ss_pred CChhHHhcCCCchHHHHHHHHHHhcc
Q 034973 3 ASMEDLAGCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~~afhe 28 (77)
++.++|..+||||+.-|..|.+.+..
T Consensus 77 ~~~~~l~~lpGIG~~ia~kI~E~l~t 102 (381)
T 1jms_A 77 TSMKDTEGIPCLGDKVKSIIEGIIED 102 (381)
T ss_dssp CSGGGGTTCSSCCHHHHHHHHHHHHH
T ss_pred cCHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 46778999999999999999777654
No 82
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=63.07 E-value=4.3 Score=31.97 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=18.5
Q ss_pred HHhcCCCchHHHHHHH------HHHhccccc
Q 034973 7 DLAGCPGIVERKVKCL------YDTFHEPFK 31 (77)
Q Consensus 7 ~Ls~CPG~G~~KarrL------~~afhePF~ 31 (77)
.|+..||||++.+.+| ++-+.+++.
T Consensus 132 ~L~~~~GiG~Ktaq~I~~~l~~~~~~~~r~~ 162 (578)
T 2w9m_A 132 ELAGLKGFGAKSAATILENVVFLFEARQRQS 162 (578)
T ss_dssp TTTTSTTCCHHHHHHHHHHHHHHHHHCSSEE
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHhhcCCee
Confidence 4556999999999999 555555553
No 83
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=62.99 E-value=1.8 Score=35.83 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=21.9
Q ss_pred CChhHHhcCCCchHHHHHHHHHHhcc
Q 034973 3 ASMEDLAGCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~~afhe 28 (77)
+..++|..++|||++++.+|++++..
T Consensus 472 L~~e~L~~l~g~G~Ksa~nLl~aIe~ 497 (667)
T 1dgs_A 472 LRKEDLLGLERMGEKSAQNLLRQIEE 497 (667)
T ss_dssp GCCHHHHTTSSCCSTTHHHHHHHHHH
T ss_pred cCHHHHhcccccchhhHHHHHHHHHH
Confidence 44688999999999999999988754
No 84
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=62.93 E-value=5.1 Score=27.47 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=17.1
Q ss_pred CChhHHhcCCCchHHHHHHHH
Q 034973 3 ASMEDLAGCPGIVERKVKCLY 23 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~ 23 (77)
.|.|||...||||+++...|-
T Consensus 86 ~svedL~~V~GIg~k~~e~l~ 106 (134)
T 1s5l_U 86 ESVEDVLNIPGLTERQKQILR 106 (134)
T ss_dssp SSGGGGGGCTTCCHHHHHHHH
T ss_pred CCHHHHHhCCCCCHHHHHHHH
Confidence 378999999999998765553
No 85
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=61.98 E-value=5.8 Score=27.69 Aligned_cols=27 Identities=19% Similarity=0.397 Sum_probs=21.8
Q ss_pred CChhHHhcCCCchHHHHHHHH-HHhccc
Q 034973 3 ASMEDLAGCPGIVERKVKCLY-DTFHEP 29 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~-~afheP 29 (77)
.+.++|..+||+|+.-|.-+. -+|+.|
T Consensus 110 ~~~~~L~~lpGIG~~TA~~il~~a~g~~ 137 (226)
T 1orn_A 110 RDRDELMKLPGVGRKTANVVVSVAFGVP 137 (226)
T ss_dssp SCHHHHTTSTTCCHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHCCCccHHHHHHHHHHHCCCc
Confidence 467899999999999988775 456665
No 86
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=61.74 E-value=5.6 Score=27.22 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=21.6
Q ss_pred CChhHHhcCCCchHHHHHHHH-HHhccc
Q 034973 3 ASMEDLAGCPGIVERKVKCLY-DTFHEP 29 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~-~afheP 29 (77)
...++|..+||+|+.-|.-+. -+|+.|
T Consensus 106 ~~~~~L~~l~GIG~~tA~~il~~~~~~~ 133 (211)
T 2abk_A 106 EDRAALEALPGVGRKTANVVLNTAFGWP 133 (211)
T ss_dssp SCHHHHHHSTTCCHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHCCCC
Confidence 457899999999999988764 456766
No 87
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=60.54 E-value=4.6 Score=29.47 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=15.4
Q ss_pred HhcCCCchHHHHHHHHHHhc
Q 034973 8 LAGCPGIVERKVKCLYDTFH 27 (77)
Q Consensus 8 Ls~CPG~G~~KarrL~~afh 27 (77)
+-.+||+|++.|..|...+.
T Consensus 237 ipGv~GiG~KtA~kLl~~~g 256 (336)
T 1rxw_A 237 NEGVKGVGVKKALNYIKTYG 256 (336)
T ss_dssp BCCCTTCCHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHcC
Confidence 34689999999999966543
No 88
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=59.36 E-value=8.3 Score=28.34 Aligned_cols=28 Identities=11% Similarity=0.147 Sum_probs=22.1
Q ss_pred CChhHHhcCCCchHHHHHHH-HHHhcccc
Q 034973 3 ASMEDLAGCPGIVERKVKCL-YDTFHEPF 30 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL-~~afhePF 30 (77)
.+.++|..+||+|+.-|.-+ .-+|+.|.
T Consensus 115 ~~~~~L~~l~GIG~~tA~~il~~~~~~~~ 143 (369)
T 3fsp_A 115 DDPDEFSRLKGVGPYTVGAVLSLAYGVPE 143 (369)
T ss_dssp CSHHHHHTSTTCCHHHHHHHHHHHHCCCC
T ss_pred hHHHHHhcCCCcCHHHHHHHHHHHCCCCc
Confidence 46789999999999988876 34577764
No 89
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=58.49 E-value=5.7 Score=28.48 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=22.7
Q ss_pred hHHhcCCCchHHHHHHHHHHhccccc
Q 034973 6 EDLAGCPGIVERKVKCLYDTFHEPFK 31 (77)
Q Consensus 6 E~Ls~CPG~G~~KarrL~~afhePF~ 31 (77)
..|..+||+++.||..|.+.|-.|-.
T Consensus 237 ~mL~~IpGVs~~~A~~I~~~ypTp~~ 262 (311)
T 2ziu_A 237 RQLMQISGVSGDKAAAVLEHYSTVSS 262 (311)
T ss_dssp HHHTTBTTCCHHHHHHHHHHCSSHHH
T ss_pred HHHHhccCCCHHHHHHHHHHCCCHHH
Confidence 56889999999999999988888863
No 90
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=58.17 E-value=6 Score=27.75 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=21.3
Q ss_pred ChhHHhcCCCchHHHHHHHH-HHhccc
Q 034973 4 SMEDLAGCPGIVERKVKCLY-DTFHEP 29 (77)
Q Consensus 4 S~E~Ls~CPG~G~~KarrL~-~afheP 29 (77)
..++|..+||+|+.-|.-+. -+|..|
T Consensus 136 ~~~~L~~lpGIG~kTA~~ill~alg~p 162 (233)
T 2h56_A 136 VIEKLTAIKGIGQWTAEMFMMFSLGRL 162 (233)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHTTCCS
T ss_pred HHHHHHhCCCcCHHHHHHHHHHhCCCC
Confidence 35789999999999998875 457777
No 91
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=57.45 E-value=5.8 Score=31.07 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=20.0
Q ss_pred hHHhcCCCchHHHHHHH------HHHhccccc
Q 034973 6 EDLAGCPGIVERKVKCL------YDTFHEPFK 31 (77)
Q Consensus 6 E~Ls~CPG~G~~KarrL------~~afhePF~ 31 (77)
++|...||||++.+++| |+.+.+++.
T Consensus 128 ~~l~~~~GiG~k~a~~i~~~l~~~~~~~~r~~ 159 (575)
T 3b0x_A 128 GDLTRLKGFGPKRAERIREGLALAQAAGKRRP 159 (575)
T ss_dssp TGGGGSTTCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred CCcccCCCCCccHHHHHHHHHHHHHHhcccee
Confidence 56888999999999998 455555553
No 92
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=56.68 E-value=5.6 Score=29.29 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=15.6
Q ss_pred cCCCchHHHHHHHHHHhc
Q 034973 10 GCPGIVERKVKCLYDTFH 27 (77)
Q Consensus 10 ~CPG~G~~KarrL~~afh 27 (77)
.+||+|++.|.+|...+.
T Consensus 238 Gv~GIG~KtA~kLi~~~g 255 (346)
T 2izo_A 238 GIRGIGPERALKIIKKYG 255 (346)
T ss_dssp CSTTCCHHHHHHHHHHSS
T ss_pred CCCCcCHHHHHHHHHHcC
Confidence 689999999999987764
No 93
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=54.65 E-value=7.5 Score=27.19 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=20.1
Q ss_pred hhHHhcCCCchHHHHHHHH-HHhccc
Q 034973 5 MEDLAGCPGIVERKVKCLY-DTFHEP 29 (77)
Q Consensus 5 ~E~Ls~CPG~G~~KarrL~-~afheP 29 (77)
.++|..+||||+.-|.-+. -+|+.|
T Consensus 145 ~~~L~~l~GIG~~TA~~ill~~lg~~ 170 (225)
T 2yg9_A 145 IAELVQLPGIGRWTAEMFLLFALARP 170 (225)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTSCCS
T ss_pred HHHHHcCCCCCHHHHHHHHHHhCCCC
Confidence 5789999999999998764 456666
No 94
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=54.21 E-value=5.8 Score=30.64 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=21.3
Q ss_pred CChhHHhcCCCchHHHHHHHHHHhccc
Q 034973 3 ASMEDLAGCPGIVERKVKCLYDTFHEP 29 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~~afheP 29 (77)
.|.++|..|+|+|+.|+++--+.|.+-
T Consensus 368 ~~~~~L~~i~g~~~~~~r~~g~~~l~~ 394 (428)
T 3saf_A 368 KEPQGIIACCNPVPPLVRQQINEMHLL 394 (428)
T ss_dssp SSHHHHHTTCSSCCHHHHHTHHHHHHH
T ss_pred CCHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 478899999999999998865554443
No 95
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=53.95 E-value=7.6 Score=27.46 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=20.5
Q ss_pred hhHHhcCCCchHHHHHHHH-HHhccc
Q 034973 5 MEDLAGCPGIVERKVKCLY-DTFHEP 29 (77)
Q Consensus 5 ~E~Ls~CPG~G~~KarrL~-~afheP 29 (77)
.++|..+||||+.-|..+. -+|+.|
T Consensus 149 ~~~L~~l~GIG~~TA~~ill~alg~p 174 (232)
T 4b21_A 149 MESLSKIKGVKRWTIEMYSIFTLGRL 174 (232)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHTSCCS
T ss_pred HHHHHhCCCcCHHHHHHHHHHhCCCC
Confidence 5789999999999998864 457766
No 96
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=53.58 E-value=7 Score=29.10 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=14.9
Q ss_pred cCCCchHHHHHHHHHHhc
Q 034973 10 GCPGIVERKVKCLYDTFH 27 (77)
Q Consensus 10 ~CPG~G~~KarrL~~afh 27 (77)
.+||+|++.|..|...|.
T Consensus 236 gipGiG~KtA~kll~~~g 253 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQKHK 253 (341)
T ss_dssp CCTTCCHHHHHHHHHHHC
T ss_pred CCCCccHHHHHHHHHHcC
Confidence 579999999999976654
No 97
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=52.51 E-value=7.2 Score=29.40 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.5
Q ss_pred cCCCchHHHHHHHHHHhc
Q 034973 10 GCPGIVERKVKCLYDTFH 27 (77)
Q Consensus 10 ~CPG~G~~KarrL~~afh 27 (77)
.+||+|++.|-.|...|.
T Consensus 255 GVpGIG~KtA~kLl~~~g 272 (363)
T 3ory_A 255 GFEGIGPKKALQLVKAYG 272 (363)
T ss_dssp CSTTCCHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHcC
Confidence 578999999999987765
No 98
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=51.90 E-value=8.5 Score=27.44 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.4
Q ss_pred hhHHhcCCCchHHHHHHH-HHHhccc
Q 034973 5 MEDLAGCPGIVERKVKCL-YDTFHEP 29 (77)
Q Consensus 5 ~E~Ls~CPG~G~~KarrL-~~afheP 29 (77)
.++|..+||||+.-|..+ .-+|+.|
T Consensus 206 ~~~L~~lpGIG~~TA~~ill~~lg~~ 231 (282)
T 1mpg_A 206 MKTLQTFPGIGRWTANYFALRGWQAK 231 (282)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHSCCS
T ss_pred HHHHhcCCCcCHHHHHHHHHHhCCCC
Confidence 688999999999999886 4578887
No 99
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=50.93 E-value=7.2 Score=28.51 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=15.4
Q ss_pred cCCCchHHHHHHHHHHhc
Q 034973 10 GCPGIVERKVKCLYDTFH 27 (77)
Q Consensus 10 ~CPG~G~~KarrL~~afh 27 (77)
.+||+|++.|-.|...+.
T Consensus 241 gv~GiG~ktA~kli~~~g 258 (340)
T 1b43_A 241 GIKGIGLKKALEIVRHSK 258 (340)
T ss_dssp CSTTCCHHHHHHHHHTCS
T ss_pred CCCCccHHHHHHHHHHcC
Confidence 588999999999987764
No 100
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=50.37 E-value=7.9 Score=29.02 Aligned_cols=19 Identities=16% Similarity=-0.001 Sum_probs=16.2
Q ss_pred hcCCCchHHHHHHHHHHhc
Q 034973 9 AGCPGIVERKVKCLYDTFH 27 (77)
Q Consensus 9 s~CPG~G~~KarrL~~afh 27 (77)
-.+||+|+++|.+|...+.
T Consensus 228 pgv~GiG~ktA~kli~~~~ 246 (352)
T 3qe9_Y 228 SSLRGIGLAKACKVLRLAN 246 (352)
T ss_dssp CCCTTCCHHHHHHHHHHCC
T ss_pred CCCCCeeHHHHHHHHHHhC
Confidence 3589999999999998873
No 101
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=49.90 E-value=13 Score=27.54 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=21.1
Q ss_pred CChhHHhc-CCCchHHHHHHHH-HHhccc
Q 034973 3 ASMEDLAG-CPGIVERKVKCLY-DTFHEP 29 (77)
Q Consensus 3 AS~E~Ls~-CPG~G~~KarrL~-~afheP 29 (77)
.+.++|.. +||+|+.-|.-+. -+|+.|
T Consensus 125 ~~~~~Ll~~LpGIG~kTA~~iL~~a~g~p 153 (287)
T 3n5n_X 125 RTAETLQQLLPGVGRYTAGAIASIAFGQA 153 (287)
T ss_dssp SSHHHHHHHSTTCCHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhcCCC
Confidence 35789998 9999999998864 456665
No 102
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=49.90 E-value=5.9 Score=33.17 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=19.5
Q ss_pred CCCChhHHhcCCCchHHHHHHHH
Q 034973 1 MDASMEDLAGCPGIVERKVKCLY 23 (77)
Q Consensus 1 i~AS~E~Ls~CPG~G~~KarrL~ 23 (77)
|+|+.++|.. -|+|++|+++|.
T Consensus 495 m~AteDELRe-dGIGekqarrI~ 516 (685)
T 4gfj_A 495 REAGVEELRE-DGLTDAQIRELK 516 (685)
T ss_dssp HHSCHHHHHH-TTCCHHHHHHHH
T ss_pred HhCCHHHHHH-ccccHHHHHHHh
Confidence 4699999966 999999999994
No 103
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=49.58 E-value=9.9 Score=26.67 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.0
Q ss_pred hhHHhcCCCchHHHHHHHH-HHhccc
Q 034973 5 MEDLAGCPGIVERKVKCLY-DTFHEP 29 (77)
Q Consensus 5 ~E~Ls~CPG~G~~KarrL~-~afheP 29 (77)
.++|..+||+|+.-|..+. -+|+.|
T Consensus 138 ~~~L~~l~GIG~~TA~~ill~~lg~p 163 (228)
T 3s6i_A 138 IERLTQIKGIGRWTVEMLLIFSLNRD 163 (228)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHTSCCS
T ss_pred HHHHHhCCCcCHHHHHHHHHHhCCCC
Confidence 5789999999999998875 467776
No 104
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=49.46 E-value=8 Score=29.26 Aligned_cols=26 Identities=8% Similarity=0.015 Sum_probs=20.4
Q ss_pred CChhHHhcCCCchHHHHHHHHHHhcc
Q 034973 3 ASMEDLAGCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~~afhe 28 (77)
.|.++|..|+|+|+.|+++.-+.|.+
T Consensus 352 ~~~~~L~~i~g~~~~~~~~~g~~~l~ 377 (410)
T 2hbj_A 352 TDVIGVVSLTNGVTEHVRQNAKLLAN 377 (410)
T ss_dssp CSHHHHHTCTTCCCHHHHHTHHHHHH
T ss_pred CCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999875444433
No 105
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=49.27 E-value=9.8 Score=27.57 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=20.9
Q ss_pred hhHHhcCCCchHHHHHHHH-HHhccc
Q 034973 5 MEDLAGCPGIVERKVKCLY-DTFHEP 29 (77)
Q Consensus 5 ~E~Ls~CPG~G~~KarrL~-~afheP 29 (77)
.++|..+||+|+.-|..+. -+|+.|
T Consensus 210 ~~~L~~lpGIG~~TA~~ill~~lg~p 235 (290)
T 3i0w_A 210 HEELKKFMGVGPQVADCIMLFSMQKY 235 (290)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHCCT
T ss_pred HHHHHhCCCcCHHHHHHHHHHhCCCC
Confidence 5789999999999998874 557776
No 106
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=48.29 E-value=11 Score=27.27 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=19.8
Q ss_pred hhHHhcCCCchHHHHHHHHH-Hhccc
Q 034973 5 MEDLAGCPGIVERKVKCLYD-TFHEP 29 (77)
Q Consensus 5 ~E~Ls~CPG~G~~KarrL~~-afheP 29 (77)
.++|..+||||+.-|..+.- +|+ |
T Consensus 209 ~~~L~~lpGIG~~TA~~ill~~lg-~ 233 (295)
T 2jhn_A 209 YEYLTSFKGIGRWTAELVLSIALG-K 233 (295)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTC-C
T ss_pred HHHHhcCCCcCHHHHHHHHHHccC-C
Confidence 57899999999999988744 566 5
No 107
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=47.74 E-value=7.3 Score=26.39 Aligned_cols=20 Identities=10% Similarity=-0.109 Sum_probs=16.6
Q ss_pred ChhHHhcCCCchHHHHHHHH
Q 034973 4 SMEDLAGCPGIVERKVKCLY 23 (77)
Q Consensus 4 S~E~Ls~CPG~G~~KarrL~ 23 (77)
+.++|..+||+|+--|..+.
T Consensus 102 ~~~~L~~LpGVG~yTAdav~ 121 (161)
T 4e9f_A 102 QWKYPIELHGIGKYGNDSYR 121 (161)
T ss_dssp CCSSGGGSTTCCHHHHHHHH
T ss_pred ChhhhhcCCCchHHHHHHHH
Confidence 56889999999998887653
No 108
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=47.55 E-value=9 Score=27.82 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=13.2
Q ss_pred cCCCchHHHHHHHHHH
Q 034973 10 GCPGIVERKVKCLYDT 25 (77)
Q Consensus 10 ~CPG~G~~KarrL~~a 25 (77)
.+||||++.|-.|...
T Consensus 229 GvpGiG~ktA~kli~~ 244 (326)
T 1a76_A 229 GVKGIGFKRAYELVRS 244 (326)
T ss_dssp TTTTCCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHc
Confidence 6889999999888653
No 109
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=46.01 E-value=11 Score=26.56 Aligned_cols=27 Identities=15% Similarity=0.065 Sum_probs=20.4
Q ss_pred ChhHHh-cCCCchHHHHHHHHH-Hhcccc
Q 034973 4 SMEDLA-GCPGIVERKVKCLYD-TFHEPF 30 (77)
Q Consensus 4 S~E~Ls-~CPG~G~~KarrL~~-afhePF 30 (77)
+.++|. .+||+|++-|.-+.- +...+|
T Consensus 122 ~re~Ll~~LpGVG~KTA~~vL~~~g~~~~ 150 (214)
T 3fhf_A 122 AREFLVRNIKGIGYKEASHFLRNVGYDDV 150 (214)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCCc
Confidence 467899 999999999988643 444555
No 110
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=44.79 E-value=12 Score=28.10 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=21.2
Q ss_pred ChhHHhcCCCchHHHHHHHH-HHhccc
Q 034973 4 SMEDLAGCPGIVERKVKCLY-DTFHEP 29 (77)
Q Consensus 4 S~E~Ls~CPG~G~~KarrL~-~afheP 29 (77)
..++|..+||||+.-|..+. -+|..|
T Consensus 251 ~~~~L~~LpGIGp~TA~~ill~alg~p 277 (360)
T 2xhi_A 251 AHKALCILPGVGTCVADKICLMALDKP 277 (360)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHSCCT
T ss_pred HHHHHHhCCCCCHHHHHHHHHHhCCCC
Confidence 35789999999999998874 457776
No 111
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=41.35 E-value=14 Score=27.65 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=14.9
Q ss_pred cCCCchHHHHHHHHHHhc
Q 034973 10 GCPGIVERKVKCLYDTFH 27 (77)
Q Consensus 10 ~CPG~G~~KarrL~~afh 27 (77)
.+||||++.|-.|...+.
T Consensus 236 ~IpGIG~KtA~kLl~~~g 253 (379)
T 1ul1_X 236 SIRGIGPKRAVDLIQKHK 253 (379)
T ss_dssp CCTTCCHHHHHHHHHHSS
T ss_pred CCCCcCHHHHHHHHHHcC
Confidence 469999999999977654
No 112
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=40.06 E-value=16 Score=28.30 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=18.6
Q ss_pred hhHHhcCCCchHHHHHHHHHHh
Q 034973 5 MEDLAGCPGIVERKVKCLYDTF 26 (77)
Q Consensus 5 ~E~Ls~CPG~G~~KarrL~~af 26 (77)
.-.|..+||+|..-|++||++-
T Consensus 656 ~~~L~qlp~i~~~rar~L~~~g 677 (715)
T 2va8_A 656 LLELVQISGVGRKRARLLYNNG 677 (715)
T ss_dssp GHHHHTSTTCCHHHHHHHHHTT
T ss_pred hcchhhCCCCCHHHHHHHHHcC
Confidence 3468999999999999998654
No 113
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=39.11 E-value=17 Score=25.70 Aligned_cols=25 Identities=20% Similarity=0.089 Sum_probs=19.6
Q ss_pred ChhHHh-cCCCchHHHHHHHHHHhcc
Q 034973 4 SMEDLA-GCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 4 S~E~Ls-~CPG~G~~KarrL~~afhe 28 (77)
..++|. .+||+|++=|.-+.-.+..
T Consensus 127 ~r~~L~~~l~GVG~kTA~~vL~~~g~ 152 (219)
T 3n0u_A 127 SREFLVRNAKGIGWKEASHFLRNTGV 152 (219)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHTTTC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 357899 9999999999888654443
No 114
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=37.84 E-value=21 Score=26.05 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=19.3
Q ss_pred CChhHHhcCCCchHHHHHHHHHHhcc
Q 034973 3 ASMEDLAGCPGIVERKVKCLYDTFHE 28 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~~afhe 28 (77)
.|.++|..| |+|+.|+++.-+.|-+
T Consensus 253 ~~~~~l~~i-g~~~~~~~~~g~~~l~ 277 (375)
T 1yt3_A 253 GSLGELDSL-GLSGSEIRFHGKTLLA 277 (375)
T ss_dssp CSHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred CCHHHHHhc-CCChHHHHHHHHHHHH
Confidence 478999999 9999998875444443
No 115
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=34.66 E-value=21 Score=18.60 Aligned_cols=21 Identities=29% Similarity=0.162 Sum_probs=18.0
Q ss_pred CCCcchhhhhhhcHHHHHHhh
Q 034973 51 PSSVNEVTKVKKDTEERKQNV 71 (77)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~ 71 (77)
|+|.+.+.|+|+---.++||-
T Consensus 2 pss~~sL~EkHkILHrLLQ~~ 22 (26)
T 3bej_E 2 PSSHSSLTERHKILHRLLQEG 22 (26)
T ss_pred CCchhhHHHHHHHHHHHHHcC
Confidence 678888999999999999874
No 116
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=33.85 E-value=18 Score=28.20 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=19.8
Q ss_pred hHHhcCCCchHHHHHHHHHH-hcccc
Q 034973 6 EDLAGCPGIVERKVKCLYDT-FHEPF 30 (77)
Q Consensus 6 E~Ls~CPG~G~~KarrL~~a-fhePF 30 (77)
-.|..+||||..-|++|+++ +..++
T Consensus 646 ~~L~qlp~v~~~rar~L~~~G~~s~~ 671 (720)
T 2zj8_A 646 IPLMQLPLVGRRRARALYNSGFRSIE 671 (720)
T ss_dssp GGGTTSTTCCHHHHHHHHTTTCCSHH
T ss_pred hhhhhCCCCCHHHHHHHHHcCCCCHH
Confidence 45889999999999999976 44443
No 117
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=33.33 E-value=2.3 Score=30.76 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=21.9
Q ss_pred hhHHhcCCCchHHHHHHHHHHhcccc
Q 034973 5 MEDLAGCPGIVERKVKCLYDTFHEPF 30 (77)
Q Consensus 5 ~E~Ls~CPG~G~~KarrL~~afhePF 30 (77)
..+|..+||+|+.||..|.+.+-.|.
T Consensus 232 ~~~L~~I~GVs~~~A~~I~~~ypTp~ 257 (307)
T 2zix_A 232 ARQLMQVRGVSGEKAAALVDRYSTPA 257 (307)
T ss_dssp HHTTTCSTTCCSTTTTTSSSSSCSHH
T ss_pred HHHHHhccCCCHHHHHHHHHHcCCHH
Confidence 45689999999999999877777775
No 118
>1u57_A GAG polyprotein, HIV-1; particle assembly, viral protein; NMR {Human immunodeficiency virus 1}
Probab=32.54 E-value=12 Score=20.57 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=16.6
Q ss_pred hHHhcCCCch-H-HHHHHHHHHhcc
Q 034973 6 EDLAGCPGIV-E-RKVKCLYDTFHE 28 (77)
Q Consensus 6 E~Ls~CPG~G-~-~KarrL~~afhe 28 (77)
|-+..|+|+| | .||+-|-++..+
T Consensus 3 em~~acqgvggp~hKarvlAEAMsq 27 (48)
T 1u57_A 3 EMMTACQGVGGPGHKARVLAEAMSQ 27 (48)
T ss_dssp THHHHBTTTSBCTTHHHHHHHHHHH
T ss_pred hhhhhccCCCCCcchhhHHHHHHHH
Confidence 4567899984 4 799988776554
No 119
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=30.46 E-value=39 Score=20.25 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=18.8
Q ss_pred hhHHhcCCCchHHHHHHHHHHh
Q 034973 5 MEDLAGCPGIVERKVKCLYDTF 26 (77)
Q Consensus 5 ~E~Ls~CPG~G~~KarrL~~af 26 (77)
..+|..+|+|-..|||+-.+.|
T Consensus 10 e~~LkkIP~FVR~kvrr~tE~~ 31 (62)
T 2l09_A 10 KTKLKNIPFFARSQAKARIEQL 31 (62)
T ss_dssp HHHHHTSCGGGHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH
Confidence 4679999999999999987665
No 120
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=28.17 E-value=12 Score=30.69 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=0.0
Q ss_pred ChhHHhcCCCc------hHHHHHHHHHHhcc
Q 034973 4 SMEDLAGCPGI------VERKVKCLYDTFHE 28 (77)
Q Consensus 4 S~E~Ls~CPG~------G~~KarrL~~afhe 28 (77)
+.++|..++|| |+++|.+|++++..
T Consensus 489 ~~~~L~~l~~~~~~~g~g~ksa~nLl~aIe~ 519 (615)
T 3sgi_A 489 TERDLLRTDLFRTKAGELSANGKRLLVNLDK 519 (615)
T ss_dssp -------------------------------
T ss_pred CHHHHhhccccccccCccchHHHHHHHHHHH
Confidence 46789999966 58999999998864
No 121
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=27.44 E-value=29 Score=26.85 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=17.9
Q ss_pred hhHHhcCCCchHHHHHHHHHH
Q 034973 5 MEDLAGCPGIVERKVKCLYDT 25 (77)
Q Consensus 5 ~E~Ls~CPG~G~~KarrL~~a 25 (77)
.-.|..+||||..-|++|++.
T Consensus 631 ~~~L~qlp~v~~~~ar~l~~~ 651 (702)
T 2p6r_A 631 LLELVRIRHIGRVRARKLYNA 651 (702)
T ss_dssp GHHHHTSTTCCHHHHHHHHTT
T ss_pred hHhhhcCCCCCHHHHHHHHHc
Confidence 346889999999999999865
No 122
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=26.97 E-value=30 Score=20.42 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=23.0
Q ss_pred ChhHHhcCCCchHHHHHHHHHHh-ccccc
Q 034973 4 SMEDLAGCPGIVERKVKCLYDTF-HEPFK 31 (77)
Q Consensus 4 S~E~Ls~CPG~G~~KarrL~~af-hePF~ 31 (77)
|.+|.+..=|+|..|+++|...= ..||.
T Consensus 18 Ti~EaAeylgIg~~~l~~L~~~~~~~~~~ 46 (70)
T 1y6u_A 18 TIEEASKYFRIGENKLRRLAEENKNANWL 46 (70)
T ss_dssp EHHHHHHHTCSCHHHHHHHHHHCTTCSSE
T ss_pred CHHHHHHHHCcCHHHHHHHHHcCCCCCcE
Confidence 56788889999999999999773 46764
No 123
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=26.51 E-value=36 Score=24.44 Aligned_cols=19 Identities=11% Similarity=0.130 Sum_probs=16.4
Q ss_pred hHHhcCCCchHHHHHHHHH
Q 034973 6 EDLAGCPGIVERKVKCLYD 24 (77)
Q Consensus 6 E~Ls~CPG~G~~KarrL~~ 24 (77)
..|..+||||+..+++|.+
T Consensus 157 ~pL~Qlp~i~~~~~~~l~~ 175 (328)
T 3im1_A 157 NPLRQIPHFNNKILEKCKE 175 (328)
T ss_dssp CGGGGSTTCCHHHHHHHHH
T ss_pred CceeCCCCCCHHHHHHHHh
Confidence 3589999999999999875
No 124
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=25.69 E-value=31 Score=28.96 Aligned_cols=25 Identities=8% Similarity=0.114 Sum_probs=20.7
Q ss_pred CChhHHhcCCCchHHHHHHHHHHhc
Q 034973 3 ASMEDLAGCPGIVERKVKCLYDTFH 27 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL~~afh 27 (77)
.|.+||...+|||+++..++...+.
T Consensus 535 ~sr~~L~~V~giG~k~~ekl~~FL~ 559 (785)
T 3bzc_A 535 RTRDELKKVSRLGEKTFEQAAGFLR 559 (785)
T ss_dssp SSGGGGGGSTTCCHHHHHHHGGGEE
T ss_pred CCHHHHHhcCCCCHHHHHHhhheEE
Confidence 3789999999999999988765554
No 125
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=24.73 E-value=38 Score=20.39 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=18.7
Q ss_pred hhHHhcCCCchHHHHHHHHHHh
Q 034973 5 MEDLAGCPGIVERKVKCLYDTF 26 (77)
Q Consensus 5 ~E~Ls~CPG~G~~KarrL~~af 26 (77)
..+|..+|+|-..|||+-.+.|
T Consensus 11 e~~LkkIP~FVR~kvrr~tE~~ 32 (63)
T 2kru_A 11 EKMLGKVPFFVRKKVRKNTDNY 32 (63)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH
Confidence 4679999999999999987655
No 126
>3q8j_A Asteropsin A, ABU8-1; cystine knot, marine sponge, marine knottin, toxin; HET: PCA; 0.87A {Asteropus}
Probab=23.92 E-value=21 Score=19.76 Aligned_cols=7 Identities=43% Similarity=0.971 Sum_probs=5.4
Q ss_pred cCCCchH
Q 034973 10 GCPGIVE 16 (77)
Q Consensus 10 ~CPG~G~ 16 (77)
-|||+|-
T Consensus 17 ccpglgl 23 (37)
T 3q8j_A 17 CCPGLGL 23 (37)
T ss_dssp BCTTSCE
T ss_pred CCCCCCc
Confidence 4899984
No 127
>1d8b_A SGS1 RECQ helicase; five helices, three-helical bundle flanked by two helices, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.8.1
Probab=21.26 E-value=56 Score=20.66 Aligned_cols=20 Identities=5% Similarity=0.022 Sum_probs=17.3
Q ss_pred CChhHHhcCCCchHHHHHHH
Q 034973 3 ASMEDLAGCPGIVERKVKCL 22 (77)
Q Consensus 3 AS~E~Ls~CPG~G~~KarrL 22 (77)
++++|.+.++|++++-+++.
T Consensus 45 ~~e~eF~~L~g~~~~~~~~f 64 (81)
T 1d8b_A 45 MNDSAFATLGTVEDKYRRRF 64 (81)
T ss_dssp CSHHHHGGGSCCCHHHHHHG
T ss_pred CCHHHHHHccCCCHHHHHHH
Confidence 68899999999998877764
No 128
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=20.46 E-value=50 Score=25.69 Aligned_cols=22 Identities=14% Similarity=-0.047 Sum_probs=19.9
Q ss_pred HhcCCCchHHHHHHHHHHhccc
Q 034973 8 LAGCPGIVERKVKCLYDTFHEP 29 (77)
Q Consensus 8 Ls~CPG~G~~KarrL~~afheP 29 (77)
|+..|++|+.-|++|.+-|...
T Consensus 317 Ls~IPrl~~~iae~Lv~~FGsL 338 (377)
T 3c1y_A 317 LKTVARIPLSIGYNVVRMFKTL 338 (377)
T ss_dssp HHHTSCCCHHHHHHHHHHHCSH
T ss_pred HhhCCCCCHHHHHHHHHHhCCH
Confidence 7889999999999999998764
Done!