AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>034974
MGFWTFLEGLLLLANAFAILNEDRFLAPRRWTLAELQAGGRNTLKGQVIGLIHACQFMRL
PLILLNLVTIIVKLVSG
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT2G37975 AT2G37975 AT2G37975	protein from Arabidopsis thaliana	1.9e-21
BLAST match view associations BLAST with AT3G54085 AT3G54085 AT3G54085	protein from Arabidopsis thaliana	9.2e-20
BLAST match view associations BLAST with CG32069 CG32069 CG32069	protein from Drosophila melanogaster	4.3e-06
BLAST match view associations BLAST with W09G3.8 W09G3.8 W09G3.8	gene from Caenorhabditis elegans	1.5e-05
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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034974
        (77 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006304 - symbol:AT2G37975 "AT2G37975" speci...   251  1.9e-21   1
TAIR|locus:4010713831 - symbol:AT3G54085 "AT3G54085" spec...   235  9.2e-20   1
FB|FBgn0052069 - symbol:CG32069 species:7227 "Drosophila ...   106  4.3e-06   1
WB|WBGene00012371 - symbol:W09G3.8 species:6239 "Caenorha...   101  1.5e-05   1
POMBASE|SPAC19A8.09 - symbol:SPAC19A8.09 "ER to Golgi tra...    90  0.00021   1


>TAIR|locus:505006304 [details] [associations]
            symbol:AT2G37975 "AT2G37975" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002685 InterPro:IPR013880 PANTHER:PTHR15858
            Pfam:PF08571 OMA:APSAKDQ UniGene:At.24015 UniGene:At.66364
            ProtClustDB:CLSN2717713 EMBL:AY084475 EMBL:BT024530 EMBL:AK220947
            IPI:IPI00543157 RefSeq:NP_565877.1 STRING:Q8LG42 PRIDE:Q8LG42
            EnsemblPlants:AT2G37975.1 GeneID:818375 KEGG:ath:AT2G37975
            TAIR:At2g37975 InParanoid:Q8LG42 PhylomeDB:Q8LG42
            Genevestigator:Q8LG42 Uniprot:Q8LG42
        Length = 78

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 48/78 (61%), Positives = 56/78 (71%)

Query:     1 MGFWTFLEGXXXXXXXXXXXXEDRFLAPRRWTLAEL-QAGGRNTLKGQVIGLIHACQFMR 59
             MGFWT +EG            EDRFLAP+ WTLAEL Q G RN+LKGQ+IGLIHAC +MR
Sbjct:     1 MGFWTLMEGLLLFANALAILNEDRFLAPKGWTLAELHQTGKRNSLKGQIIGLIHACHYMR 60

Query:    60 LPLILLNLVTIIVKLVSG 77
             LPL+L NL+ I+ KL SG
Sbjct:    61 LPLMLFNLIVIVFKLFSG 78


>TAIR|locus:4010713831 [details] [associations]
            symbol:AT3G54085 "AT3G54085" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 InterPro:IPR013880 PANTHER:PTHR15858
            Pfam:PF08571 EMBL:BT004670 EMBL:DQ492210 EMBL:AK117767
            EMBL:AK119042 IPI:IPI00846982 RefSeq:NP_001078282.1
            RefSeq:NP_001154675.1 UniGene:At.72888 UniGene:At.922 PRIDE:Q8GRX8
            EnsemblPlants:AT3G54085.1 EnsemblPlants:AT3G54085.2 GeneID:5008085
            KEGG:ath:AT3G54085 TAIR:At3g54085 OMA:GLIHACQ PhylomeDB:Q8GRX8
            ProtClustDB:CLSN2717713 Genevestigator:Q8GRX8 Uniprot:Q8GRX8
        Length = 78

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 45/78 (57%), Positives = 54/78 (69%)

Query:     1 MGFWTFLEGXXXXXXXXXXXXEDRFLAPRRWTLAEL-QAGGRNTLKGQVIGLIHACQFMR 59
             MGFWT L+G            EDRFL PR WTL EL Q   RN+ KGQ+IGLIHACQ+MR
Sbjct:     1 MGFWTLLKGLLLFANALAILNEDRFLVPRGWTLGELHQTDRRNSPKGQIIGLIHACQYMR 60

Query:    60 LPLILLNLVTIIVKLVSG 77
             LPL+L+N   I++KL+SG
Sbjct:    61 LPLMLINTAVIVLKLISG 78


>FB|FBgn0052069 [details] [associations]
            symbol:CG32069 species:7227 "Drosophila melanogaster"
            [GO:0022008 "neurogenesis" evidence=IMP] EMBL:AE014296
            GO:GO:0022008 eggNOG:NOG329574 GeneTree:ENSGT00510000047648
            InterPro:IPR013880 PANTHER:PTHR15858 Pfam:PF08571 ChiTaRS:CG32069
            EMBL:BT023689 RefSeq:NP_729654.1 UniGene:Dm.27113
            EnsemblMetazoa:FBtr0076241 GeneID:39235 KEGG:dme:Dmel_CG32069
            UCSC:CG32069-RA FlyBase:FBgn0052069 InParanoid:Q9VTE1 OMA:APSAKDQ
            OrthoDB:EOG4547GD GenomeRNAi:39235 NextBio:812639 Uniprot:Q9VTE1
        Length = 80

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 28/76 (36%), Positives = 39/76 (51%)

Query:     4 WTFLEGXXXXXXXXXXXXEDRFLAPRRW-TLAELQAGGRNTLKGQVIGLIHACQFM-RLP 61
             WT +E             E+RFLA   W   A  Q  G  T K QV+ LI + + + ++P
Sbjct:     5 WTLIESSLLCLNAVCILHEERFLAKFGWGRQAGQQDFGAPTAKDQVLNLIRSIRTVAKIP 64

Query:    62 LILLNLVTIIVKLVSG 77
             LI LN++ II KL+ G
Sbjct:    65 LIFLNIIAIIFKLLLG 80


>WB|WBGene00012371 [details] [associations]
            symbol:W09G3.8 species:6239 "Caenorhabditis elegans"
            [GO:0016021 "integral to membrane" evidence=IEA] eggNOG:NOG329574
            GeneTree:ENSGT00510000047648 HOGENOM:HOG000192480 OMA:QTVMRMP
            InterPro:IPR013880 PANTHER:PTHR15858 Pfam:PF08571 EMBL:Z82080
            RefSeq:NP_001021673.1 EnsemblMetazoa:W09G3.8.1
            EnsemblMetazoa:W09G3.8.2 GeneID:3565298 KEGG:cel:CELE_W09G3.8
            UCSC:W09G3.8.1 CTD:3565298 WormBase:W09G3.8 InParanoid:Q7YTG6
            NextBio:955949 Uniprot:Q7YTG6
        Length = 80

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 25/78 (32%), Positives = 37/78 (47%)

Query:     1 MGFWTFLEGXXXXXXXXXXXXEDRFLAPRRWTLAELQAGGRNTLKGQVIGLIHACQ-FMR 59
             + F+  LE              +RFL             G N++K Q++ LI A Q  MR
Sbjct:     3 LSFYALLEAALLVLNGIAILHRERFLKKYGLGAPSHSFDGSNSVKDQLVSLIFAVQTVMR 62

Query:    60 LPLILLNLVTIIVKLVSG 77
             +PLI +N+V I+ KL+ G
Sbjct:    63 MPLIAINIVVIVFKLILG 80


>POMBASE|SPAC19A8.09 [details] [associations]
            symbol:SPAC19A8.09 "ER to Golgi transport protein Yos1
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000139
            "Golgi membrane" evidence=ISO] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
            [GO:0005789 "endoplasmic reticulum membrane" evidence=ISO]
            [GO:0006886 "intracellular protein transport" evidence=NAS]
            [GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO]
            [GO:0016021 "integral to membrane" evidence=IEA]
            PomBase:SPAC19A8.09 GO:GO:0016021 GO:GO:0006886 GO:GO:0000139
            EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005789 GO:GO:0006888
            eggNOG:NOG329574 HOGENOM:HOG000192480 InterPro:IPR013880
            PANTHER:PTHR15858 Pfam:PF08571 PIR:T37952 RefSeq:NP_593783.1
            STRING:O13825 EnsemblFungi:SPAC19A8.09.1 GeneID:2542215
            KEGG:spo:SPAC19A8.09 OMA:FLNRIGW OrthoDB:EOG451J1J NextBio:20803284
            Uniprot:O13825
        Length = 81

 Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
 Identities = 27/79 (34%), Positives = 37/79 (46%)

Query:     2 GFWTFLEGXXXXXXXXXXXXEDRFLAPRRWTL-AELQAGGR-NTLKGQVIGLIHACQ-FM 58
             GF   L              EDRFL    W+  A L  G R +T+K +++ LI A +  M
Sbjct:     3 GFGNILYVTLLLLNAVAILSEDRFLGRIGWSQSAALGFGDRQDTIKSRILHLIRAIRTVM 62

Query:    59 RLPLILLNLVTIIVKLVSG 77
               PLI +N + I+  LV G
Sbjct:    63 TFPLIAINTIVIVYNLVLG 81


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.331   0.146   0.464    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       77        65   0.00091  102 3  11 21  0.50    27
                                                     29  0.46    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  504 (54 KB)
  Total size of DFA:  88 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.88u 0.14s 7.02t   Elapsed:  00:00:01
  Total cpu time:  6.88u 0.14s 7.02t   Elapsed:  00:00:01
  Start:  Fri May 10 04:12:32 2013   End:  Fri May 10 04:12:33 2013
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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
