Query 034974
Match_columns 77
No_of_seqs 114 out of 165
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 08:11:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034974.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034974hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08571 Yos1: Yos1-like; Int 100.0 2.6E-42 5.6E-47 221.3 7.7 75 3-77 1-80 (80)
2 KOG4779 Predicted membrane pro 100.0 2E-38 4.3E-43 203.0 6.5 77 1-77 3-82 (82)
3 PRK09891 cold shock gene; Prov 53.7 6.1 0.00013 25.0 0.7 20 4-23 15-34 (76)
4 PF09900 DUF2127: Predicted me 35.5 1.3E+02 0.0028 20.5 5.0 67 2-74 71-137 (141)
5 PF12759 HTH_Tnp_IS1: InsA C-t 33.4 63 0.0014 18.9 2.8 31 40-70 6-40 (46)
6 COG4660 RnfE Predicted NADH:ub 30.7 16 0.00035 27.4 -0.1 24 47-70 75-112 (212)
7 COG2119 Predicted membrane pro 29.6 41 0.00088 24.9 1.9 22 43-64 17-38 (190)
8 COG4095 Uncharacterized conser 28.7 82 0.0018 20.8 3.0 32 44-75 45-76 (89)
9 PF04796 RepA_C: Plasmid encod 28.7 30 0.00064 24.5 1.0 31 24-54 34-64 (161)
10 COG2020 STE14 Putative protein 28.4 29 0.00064 24.3 0.9 20 9-28 146-165 (187)
11 PF03875 Statherin: Statherin; 22.5 15 0.00031 21.2 -1.2 10 21-30 3-12 (42)
12 PF06198 DUF999: Protein of un 20.1 49 0.0011 23.2 0.8 20 54-73 80-100 (143)
No 1
>PF08571 Yos1: Yos1-like; InterPro: IPR013880 In yeast, Yos1 is a subunit of the Yip1p-Yif1p complex and is required for transport between the endoplasmic reticulum and the Golgi complex. Yos1 appears to be conserved in eukaryotes [].
Probab=100.00 E-value=2.6e-42 Score=221.32 Aligned_cols=75 Identities=47% Similarity=0.763 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHHHHhhcccccccccCcchhhhcc-C---CCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHhhcC
Q 034974 3 FWTFLEGLLLLANAFAILNEDRFLAPRRWTLAELQA-G---GRNTLKGQVIGLIHACQ-FMRLPLILLNLVTIIVKLVSG 77 (77)
Q Consensus 3 l~~ll~a~LL~~NAiaILnE~RFL~kiGw~~~~~~~-~---~~~s~K~qii~LI~avr-~mRiPLI~iN~i~Iv~~Ll~G 77 (77)
||+++|+++||+||+|||||||||+|+||++++.++ | +++|+|+|+++||+||| |||+|||++|+++|+|||+||
T Consensus 1 l~~Ll~a~LL~iNAiAILnE~RFL~kiGw~~~~~~~~g~~~~~~siK~qii~LI~aVrT~mRiPLI~iN~~vIv~~Lv~G 80 (80)
T PF08571_consen 1 LGSLLYASLLLINAIAILNEDRFLAKIGWSSSQNSGFGFGGDPNSIKAQIINLIRAVRTLMRIPLIFINILVIVYELVFG 80 (80)
T ss_pred CHHHHHHHHHHHHHHHHcCHHHHhccCCCCCccccccccCCCCcCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhC
Confidence 699999999999999999999999999999988755 3 78999999999999999 999999999999999999998
No 2
>KOG4779 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2e-38 Score=203.02 Aligned_cols=77 Identities=39% Similarity=0.649 Sum_probs=73.5
Q ss_pred CchHHHHHHHHHHHHHHHhhcccccccccCcchhhhcc-C-CCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHhhcC
Q 034974 1 MGFWTFLEGLLLLANAFAILNEDRFLAPRRWTLAELQA-G-GRNTLKGQVIGLIHACQ-FMRLPLILLNLVTIIVKLVSG 77 (77)
Q Consensus 1 ~~l~~ll~a~LL~~NAiaILnE~RFL~kiGw~~~~~~~-~-~~~s~K~qii~LI~avr-~mRiPLI~iN~i~Iv~~Ll~G 77 (77)
||+++++|+++||+||+|||||||||+|+||++|+..+ | +++++|+|+++||+||| +||+|||++|+++|+|+|++|
T Consensus 3 Fglg~llyv~LLlvNAvAvLsEeRFL~riGws~d~~~gFG~~q~tiKS~~~~LIravrTvmrvPLI~iN~ivIVy~LllG 82 (82)
T KOG4779|consen 3 FGLGSLLYVALLLVNAVAVLSEERFLKRIGWSTDQGIGFGEDQPTIKSQLMNLIRAVRTVMRVPLIIINSIVIVYLLLLG 82 (82)
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHhCcCcccCcccCCCCccHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHhC
Confidence 78999999999999999999999999999999998765 4 57999999999999999 999999999999999999998
No 3
>PRK09891 cold shock gene; Provisional
Probab=53.73 E-value=6.1 Score=25.00 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 034974 4 WTFLEGLLLLANAFAILNED 23 (77)
Q Consensus 4 ~~ll~a~LL~~NAiaILnE~ 23 (77)
+.++-+++.+.||+||.++.
T Consensus 15 gaffisalfffnavcivsdn 34 (76)
T PRK09891 15 GAFFISALFFFNAVCIVSDN 34 (76)
T ss_pred hhHHHHHHHHhceeeEeeCC
Confidence 46788899999999998873
No 4
>PF09900 DUF2127: Predicted membrane protein (DUF2127); InterPro: IPR021125 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=35.49 E-value=1.3e+02 Score=20.50 Aligned_cols=67 Identities=15% Similarity=0.261 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHHHHHHhhcccccccccCcchhhhccCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 034974 2 GFWTFLEGLLLLANAFAILNEDRFLAPRRWTLAELQAGGRNTLKGQVIGLIHACQFMRLPLILLNLVTIIVKL 74 (77)
Q Consensus 2 ~l~~ll~a~LL~~NAiaILnE~RFL~kiGw~~~~~~~~~~~s~K~qii~LI~avr~mRiPLI~iN~i~Iv~~L 74 (77)
+++.+.|+.+-++=|..-..++|+=...+..... --+=-|+-.+++..-.+|+-+-.+|+++++|.+
T Consensus 71 a~~~~~Ya~l~lvea~GLw~~k~Wae~lav~~~~------~fiP~Eiyel~~~~s~~~~~~l~~Nv~iV~yl~ 137 (141)
T PF09900_consen 71 ALYLLAYALLRLVEAYGLWRGKRWAEWLAVISTG------IFIPYEIYELIRHPSWLKILVLLVNVAIVVYLL 137 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHhHHHHHHHH------HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999998876665543321 245567888888777899999999999999875
No 5
>PF12759 HTH_Tnp_IS1: InsA C-terminal domain; InterPro: IPR024431 This entry represents the helix-turn-helix domain found at the C-terminal of InsA.
Probab=33.42 E-value=63 Score=18.87 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=23.9
Q ss_pred CCCcHHHHHHHHHH---HHH-HhhHHHHHHHHHHH
Q 034974 40 GRNTLKGQVIGLIH---ACQ-FMRLPLILLNLVTI 70 (77)
Q Consensus 40 ~~~s~K~qii~LI~---avr-~mRiPLI~iN~i~I 70 (77)
..+++|.||+.+.. .+| --|+-=|.+|++.=
T Consensus 6 ~kpgikeqIvema~nG~GiRdtaRvL~I~~nTVlr 40 (46)
T PF12759_consen 6 RKPGIKEQIVEMAFNGSGIRDTARVLKISINTVLR 40 (46)
T ss_pred cCccHHHHHHHHHhcCCcchhhHhHhcchHHHHHH
Confidence 46899999999974 567 67777778888753
No 6
>COG4660 RnfE Predicted NADH:ubiquinone oxidoreductase, subunit RnfE [Energy production and conversion]
Probab=30.72 E-value=16 Score=27.43 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=17.0
Q ss_pred HHHHHHHHHH-Hhh-------------HHHHHHHHHHH
Q 034974 47 QVIGLIHACQ-FMR-------------LPLILLNLVTI 70 (77)
Q Consensus 47 qii~LI~avr-~mR-------------iPLI~iN~i~I 70 (77)
-|..+..+|+ +|- +|||+.|.++|
T Consensus 75 IIAs~VT~V~mlm~Ayt~~LYqsLGiFIPLIVtNCIii 112 (212)
T COG4660 75 IIASVVTAVQMLMNAYTYDLYQSLGIFIPLIVTNCIVI 112 (212)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHhhhhhhhheeeeeEe
Confidence 3455666666 664 89999998765
No 7
>COG2119 Predicted membrane protein [Function unknown]
Probab=29.60 E-value=41 Score=24.91 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=18.9
Q ss_pred cHHHHHHHHHHHHHHhhHHHHH
Q 034974 43 TLKGQVIGLIHACQFMRLPLIL 64 (77)
Q Consensus 43 s~K~qii~LI~avr~mRiPLI~ 64 (77)
+=|.|++.++.|-||=|+|.+.
T Consensus 17 GDKT~lia~llA~r~~~~~v~~ 38 (190)
T COG2119 17 GDKTQLIAMLLAMRYRRWPVFA 38 (190)
T ss_pred ccHHHHHHHHHHHhcCCchhHH
Confidence 3499999999999976999874
No 8
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=28.69 E-value=82 Score=20.77 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 034974 44 LKGQVIGLIHACQFMRLPLILLNLVTIIVKLV 75 (77)
Q Consensus 44 ~K~qii~LI~avr~mRiPLI~iN~i~Iv~~Ll 75 (77)
.-+-...|+|+++.+-.|++..|++..+.-++
T Consensus 45 ~ia~~lwliygILi~~lPii~aN~i~~il~li 76 (89)
T COG4095 45 NIALFLWLIYGILINDLPIIIANIISFILSLI 76 (89)
T ss_pred HHHHHHHHHHHHHHccCcchhHHHHHHHHHHH
Confidence 34567789999998899999999998776553
No 9
>PF04796 RepA_C: Plasmid encoded RepA protein; InterPro: IPR006881 This is a family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood [].
Probab=28.68 E-value=30 Score=24.48 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=20.8
Q ss_pred ccccccCcchhhhccCCCCcHHHHHHHHHHH
Q 034974 24 RFLAPRRWTLAELQAGGRNTLKGQVIGLIHA 54 (77)
Q Consensus 24 RFL~kiGw~~~~~~~~~~~s~K~qii~LI~a 54 (77)
.||+++|.+.+.+..|+-..+|.|+-.|.++
T Consensus 34 ~flr~lG~~~tGG~~g~~~~lreQ~~rL~~~ 64 (161)
T PF04796_consen 34 EFLRRLGLSPTGGRRGTITRLREQMERLFAC 64 (161)
T ss_pred HHHHHhCCCCCCCCcccHHHHHHHHHHHHhh
Confidence 4888888876322113346899999888765
No 10
>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=28.44 E-value=29 Score=24.34 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhcccccccc
Q 034974 9 GLLLLANAFAILNEDRFLAP 28 (77)
Q Consensus 9 a~LL~~NAiaILnE~RFL~k 28 (77)
+...+++.+.|..|||+|..
T Consensus 146 ~~~~~~~~~~i~~EEr~L~~ 165 (187)
T COG2020 146 VLVALLFLFRIREEERYLRA 165 (187)
T ss_pred HHHHHHHHHHhhHHHHHHHH
Confidence 34556777899999999975
No 11
>PF03875 Statherin: Statherin; InterPro: IPR005575 Statherin functions biologically to inhibit the nucleation and growth of calcium phosphate minerals. The N terminus of statherin is highly charged, the glutamic acids of which have been shown to be important in the recognition hydroxyapatite [].
Probab=22.53 E-value=15 Score=21.16 Aligned_cols=10 Identities=30% Similarity=0.541 Sum_probs=7.9
Q ss_pred cccccccccC
Q 034974 21 NEDRFLAPRR 30 (77)
Q Consensus 21 nE~RFL~kiG 30 (77)
|||.||.++|
T Consensus 3 seekflrrl~ 12 (42)
T PF03875_consen 3 SEEKFLRRLG 12 (42)
T ss_pred hHHHHHHHHH
Confidence 6888988865
No 12
>PF06198 DUF999: Protein of unknown function (DUF999); InterPro: IPR009340 This is a family of conserved Schizosaccharomyces pombe proteins with unknown function.
Probab=20.07 E-value=49 Score=23.19 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=17.0
Q ss_pred HHH-HhhHHHHHHHHHHHHHH
Q 034974 54 ACQ-FMRLPLILLNLVTIIVK 73 (77)
Q Consensus 54 avr-~mRiPLI~iN~i~Iv~~ 73 (77)
|.| -.|+||.++=++.|++.
T Consensus 80 st~~~~rw~lliiw~ii~v~~ 100 (143)
T PF06198_consen 80 STRSKSRWPLLIIWSIIIVFA 100 (143)
T ss_pred ccccccccHHHHHHHHHHhee
Confidence 568 89999999999888864
Done!