Query 034974
Match_columns 77
No_of_seqs 114 out of 165
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 13:20:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zs4_A Regulatory protein CII; 31.5 12 0.00041 23.2 0.4 27 11-37 16-42 (83)
2 3p3c_A UDP-3-O-[3-hydroxymyris 21.3 34 0.0012 25.3 1.2 35 15-56 201-235 (274)
3 1lj2_A NSP3-C, nonstructural R 20.6 71 0.0024 20.9 2.6 20 41-60 26-46 (110)
4 3uhm_A UDP-3-O-[3-hydroxymyris 19.6 39 0.0013 25.2 1.3 35 15-56 213-247 (299)
5 3p3g_A UDP-3-O-[3-hydroxymyris 19.5 39 0.0013 25.3 1.2 35 15-56 214-248 (300)
6 2ixs_A SDAI restriction endonu 15.5 43 0.0015 25.5 0.7 11 20-30 312-322 (323)
7 2pus_A IBDV VP1 RNA-dependant 14.7 63 0.0022 27.6 1.5 46 19-64 594-645 (852)
8 1t98_A KICB protein, chromosom 14.7 67 0.0023 24.1 1.5 21 11-31 29-49 (287)
9 2yib_D RNA-directed RNA polyme 13.5 43 0.0015 28.3 0.2 46 19-64 577-628 (770)
10 1eg3_A Dystrophin; EF-hand lik 11.6 1.5E+02 0.005 21.3 2.5 44 13-56 154-197 (261)
No 1
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=31.54 E-value=12 Score=23.19 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=24.0
Q ss_pred HHHHHHHHhhcccccccccCcchhhhc
Q 034974 11 LLLANAFAILNEDRFLAPRRWTLAELQ 37 (77)
Q Consensus 11 LL~~NAiaILnE~RFL~kiGw~~~~~~ 37 (77)
-.++|++|.++..+|=+.+||+.++-+
T Consensus 16 s~iL~~La~~gQ~~vAe~~GvdeStIS 42 (83)
T 1zs4_A 16 SALLNKIAMLGTEKTAEAVGVDKSQIS 42 (83)
T ss_dssp HHHHHHHHHHCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHhCCCHHHHh
Confidence 357899999999999999999998775
No 2
>3p3c_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; lipid A biosynthesis, lipid A synthesis, LPXC, BAAB sandwich hydrolase; HET: 3P3; 1.25A {Aquifex aeolicus} PDB: 1xxe_A* 2jt2_A* 1p42_A* 1yh8_A* 1yhc_A* 3p76_A* 2ies_A* 2ier_A* 2o3z_A* 2j65_A* 2go3_A* 2go4_A*
Probab=21.25 E-value=34 Score=25.27 Aligned_cols=35 Identities=17% Similarity=0.360 Sum_probs=25.5
Q ss_pred HHHHhhcccccccccCcchhhhccCCCCcHHHHHHHHHHHHH
Q 034974 15 NAFAILNEDRFLAPRRWTLAELQAGGRNTLKGQVIGLIHACQ 56 (77)
Q Consensus 15 NAiaILnE~RFL~kiGw~~~~~~~~~~~s~K~qii~LI~avr 56 (77)
||+.+ ++++.|++-|+-.+ +.-+|.|+.++|--.-
T Consensus 201 NAiV~-~~~~vlN~~gLR~~------dE~vRHKiLD~IGDL~ 235 (274)
T 3p3c_A 201 NTLVL-GKDKVYNPEGLRYE------NEPVRHKVFDLIGDLY 235 (274)
T ss_dssp TCEEE-CSSCBCSTTCCSST------THHHHHHHHHHHHHHG
T ss_pred cEEEE-cCCcccCCCCCcCC------CchhhHHHHHHHHHHH
Confidence 67754 88888888776554 4578999998886544
No 3
>1lj2_A NSP3-C, nonstructural RNA-binding protein 34, NS34, NCVP4; NSP3, homodimer, translation, mRNA, closed loop, coiled coil; 2.38A {Simian rotavirus A} SCOP: h.1.13.2
Probab=20.61 E-value=71 Score=20.88 Aligned_cols=20 Identities=15% Similarity=0.376 Sum_probs=17.4
Q ss_pred CCcHHHHHHHHHHHHH-HhhH
Q 034974 41 RNTLKGQVIGLIHACQ-FMRL 60 (77)
Q Consensus 41 ~~s~K~qii~LI~avr-~mRi 60 (77)
+-..|+|+..|++|+- ++|.
T Consensus 26 E~dlq~ki~slisSiEw~l~S 46 (110)
T 1lj2_A 26 ERDLQNKIGSLTSSIEWYLRS 46 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 3478999999999999 9983
No 4
>3uhm_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; amidohydrolases, anti-bacterial agents, bacteria, catalytic drug design; HET: RFN; 1.26A {Pseudomonas aeruginosa} PDB: 2ves_A* 3u1y_A* 3p3e_A*
Probab=19.59 E-value=39 Score=25.25 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=25.6
Q ss_pred HHHHhhcccccccccCcchhhhccCCCCcHHHHHHHHHHHHH
Q 034974 15 NAFAILNEDRFLAPRRWTLAELQAGGRNTLKGQVIGLIHACQ 56 (77)
Q Consensus 15 NAiaILnE~RFL~kiGw~~~~~~~~~~~s~K~qii~LI~avr 56 (77)
||+.+ .+++.|++-|+-.+ +.-+|.|+.++|--.-
T Consensus 213 NAiVi-~~~~vlN~~gLRf~------dE~VRHKiLD~IGDLa 247 (299)
T 3uhm_A 213 NAIVV-DENRVLNEDGLRYE------DEFVKHKILDAIGDLY 247 (299)
T ss_dssp TSEEE-CSSSBCCTTCCSST------THHHHHHHHHHHHHHH
T ss_pred ceEEE-cCCcccCCCCccCC------CchhhHHHHHHHHHHH
Confidence 66665 78888888776553 4589999999886544
No 5
>3p3g_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; lipid A biosynthesis, lipid A synthesis, LPXC, BAAB sandwich hydrolase; HET: 3P3 UKW; 1.65A {Escherichia coli} PDB: 3ps1_A* 3ps2_A* 3ps3_A* 3nzk_A*
Probab=19.53 E-value=39 Score=25.28 Aligned_cols=35 Identities=11% Similarity=0.185 Sum_probs=25.9
Q ss_pred HHHHhhcccccccccCcchhhhccCCCCcHHHHHHHHHHHHH
Q 034974 15 NAFAILNEDRFLAPRRWTLAELQAGGRNTLKGQVIGLIHACQ 56 (77)
Q Consensus 15 NAiaILnE~RFL~kiGw~~~~~~~~~~~s~K~qii~LI~avr 56 (77)
||+.+ .+++.|++-|+-.+ +.-+|.|+.++|--.-
T Consensus 214 NAiVi-~~~~vlN~~gLRf~------dE~VRHKiLD~IGDLa 248 (300)
T 3p3g_A 214 CAIVV-DDYRVLNEDGLRFE------DEFVRHKMLDAIGDLF 248 (300)
T ss_dssp TCEEE-CSSSBCSTTCCSST------THHHHHHHHHHHHHHG
T ss_pred ceEEE-cCCcccCCCCCcCC------CchhhHHHHHHHHHHH
Confidence 67765 78888888776553 4589999999886544
No 6
>2ixs_A SDAI restriction endonuclease; hydrolase, domain architecture; HET: EPE; 2.0A {Streptomyces diastaticus}
Probab=15.46 E-value=43 Score=25.47 Aligned_cols=11 Identities=55% Similarity=0.905 Sum_probs=9.0
Q ss_pred hcccccccccC
Q 034974 20 LNEDRFLAPRR 30 (77)
Q Consensus 20 LnE~RFL~kiG 30 (77)
+|+||||-+++
T Consensus 312 fnG~rFlgpy~ 322 (323)
T 2ixs_A 312 LNGSRFLGPYE 322 (323)
T ss_dssp ECCGGGCCCCC
T ss_pred ecCCcccCCCC
Confidence 68999998765
No 7
>2pus_A IBDV VP1 RNA-dependant RNA polymerase; RNA polymerase motifs, transferase; 2.40A {Infectious bursal disease virus} PDB: 2qj1_A 2r70_A 2r72_A 2pgg_A
Probab=14.67 E-value=63 Score=27.57 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=33.4
Q ss_pred hhcccccccccCcchhhhcc-CCCCcHHHHHHHHHH--HHH-Hh--hHHHHH
Q 034974 19 ILNEDRFLAPRRWTLAELQA-GGRNTLKGQVIGLIH--ACQ-FM--RLPLIL 64 (77)
Q Consensus 19 ILnE~RFL~kiGw~~~~~~~-~~~~s~K~qii~LI~--avr-~m--RiPLI~ 64 (77)
+|+|||+++-.-|+....+. -...+.-.|+-.+++ |.| ++ -+|+|-
T Consensus 594 VL~~eRl~~S~a~pkg~enk~~~~k~~~~~~Y~~vRyEaLrmvGgw~yP~i~ 645 (852)
T 2pus_A 594 VLDKERLFCSAAYPKGVENKSLKSKVGIEQAYKVVRYEALRLVGGWNYPLLN 645 (852)
T ss_dssp EECHHHHHHHHHSCCCCCCCSSCCSSHHHHHHHHHHHHHHHHHTGGGSHHHH
T ss_pred ccCHHHHHHHhhcCCCccchhhhcchHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 68999999999898754331 224566788999999 888 65 467763
No 8
>1t98_A KICB protein, chromosome partition protein MUKF; winged helix, helix-turn helix, domain swapped, condensin; 2.90A {Escherichia coli} SCOP: a.4.5.65 a.47.6.1
Probab=14.65 E-value=67 Score=24.07 Aligned_cols=21 Identities=29% Similarity=0.164 Sum_probs=17.1
Q ss_pred HHHHHHHHhhcccccccccCc
Q 034974 11 LLLANAFAILNEDRFLAPRRW 31 (77)
Q Consensus 11 LL~~NAiaILnE~RFL~kiGw 31 (77)
|-++=|||++|.|||....+=
T Consensus 29 LaFLlaia~l~~er~d~e~~E 49 (287)
T 1t98_A 29 LSFLLAVATLNGERLDGEMSE 49 (287)
T ss_dssp HHHHHHHHHHHHSCCSSCBCH
T ss_pred HHHHHHHHHHcchhhhccccc
Confidence 345669999999999998773
No 9
>2yib_D RNA-directed RNA polymerase; transferase, reverse transcriptase, IPNV; 3.80A {Infectious pancreatic necrosis virus}
Probab=13.52 E-value=43 Score=28.30 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=32.0
Q ss_pred hhcccccccccCcchhhhcc-CCCCcHHHHHHHHHH--HHH-Hh--hHHHHH
Q 034974 19 ILNEDRFLAPRRWTLAELQA-GGRNTLKGQVIGLIH--ACQ-FM--RLPLIL 64 (77)
Q Consensus 19 ILnE~RFL~kiGw~~~~~~~-~~~~s~K~qii~LI~--avr-~m--RiPLI~ 64 (77)
+|+|||+++-.-|+....+. -...+.-.|+-++++ |.| ++ -+|+|-
T Consensus 577 VL~eeRl~~S~a~pkg~enk~~~~k~~~~q~Y~~vRyEaLr~vGgw~yP~i~ 628 (770)
T 2yib_D 577 VLENERLIASAAYPKGLENKALARKPGAEIAYQIVRYEAIRLVGGWNNPLLE 628 (770)
T ss_dssp EECHHHHHHHHHSCCCSCSSSGGGCHHHHHHHHHHHHHHHHHTTGGGSHHHH
T ss_pred cCCHHHHHHhhhcCCCcchhhhhcchHHHHHHHHHHHHHHHHHcccccHHHH
Confidence 68999999999898753321 122455678888888 888 65 467763
No 10
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=11.60 E-value=1.5e+02 Score=21.26 Aligned_cols=44 Identities=9% Similarity=0.086 Sum_probs=35.4
Q ss_pred HHHHHHhhcccccccccCcchhhhccCCCCcHHHHHHHHHHHHH
Q 034974 13 LANAFAILNEDRFLAPRRWTLAELQAGGRNTLKGQVIGLIHACQ 56 (77)
Q Consensus 13 ~~NAiaILnE~RFL~kiGw~~~~~~~~~~~s~K~qii~LI~avr 56 (77)
+.-|+++++.-.--.|+.|..+..+.++..=.|.++..+++++.
T Consensus 154 f~~aLs~l~rG~leeKL~w~F~lyDD~~G~I~~~El~~il~~i~ 197 (261)
T 1eg3_A 154 FKTGIISLCKAHLEDKYRYLFKQVASSTGFCDQRRLGLLLHDSI 197 (261)
T ss_dssp HHHHHHHTSSSCHHHHHHHHHHHHSCTTSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHheeeCCCCCCcHHHHHHHHHHHH
Confidence 46688889988888999999988874444567889999998875
Done!