Query 034974
Match_columns 77
No_of_seqs 114 out of 165
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 13:20:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034974.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034974hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2av5a1 d.58.59.1 (A:15-120) R 29.2 5.3 0.00039 23.3 -0.0 10 22-31 96-105 (106)
2 d1t98a1 a.4.5.65 (A:8-118) Chr 23.5 16 0.0012 22.4 1.5 20 12-31 23-42 (111)
3 d2czvc1 d.58.59.1 (C:3-120) RN 22.4 8.1 0.00059 22.9 -0.1 10 22-31 108-117 (118)
4 d1su3a1 a.20.1.2 (A:32-98) Fib 22.0 7.1 0.00052 21.5 -0.4 13 23-35 4-16 (67)
5 d1l6ja1 a.20.1.2 (A:29-105) Ge 20.8 11 0.00082 20.9 0.3 14 23-36 18-31 (77)
6 d1ixma_ d.123.1.1 (A:) Sporula 19.9 56 0.0041 17.8 3.4 26 41-66 2-28 (179)
7 d2bgxa1 a.20.1.1 (A:180-260) P 18.6 24 0.0017 20.0 1.4 30 24-59 26-56 (81)
8 d1slma1 a.20.1.2 (A:16-80) Str 14.5 14 0.001 20.0 -0.3 12 23-34 3-14 (65)
9 d1p42a2 d.14.1.7 (A:128-280) U 13.0 35 0.0025 21.0 1.2 35 15-56 81-115 (147)
10 d1q90r_ f.23.12.1 (R:) ISP sub 12.6 45 0.0033 16.8 1.4 10 44-53 8-17 (39)
No 1
>d2av5a1 d.58.59.1 (A:15-120) RNase P protein component 2, Rnp2 {Pyrococcus furiosus [TaxId: 2261]}
Probab=29.22 E-value=5.3 Score=23.28 Aligned_cols=10 Identities=30% Similarity=0.850 Sum_probs=8.8
Q ss_pred ccccccccCc
Q 034974 22 EDRFLAPRRW 31 (77)
Q Consensus 22 E~RFL~kiGw 31 (77)
|++||.|+||
T Consensus 96 ~~k~l~~~~~ 105 (106)
T d2av5a1 96 KRKFLSQFGW 105 (106)
T ss_dssp HHHTTTTTTC
T ss_pred HHHHHHHhcC
Confidence 5789999998
No 2
>d1t98a1 a.4.5.65 (A:8-118) Chromosome partition protein MukF (KicB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.48 E-value=16 Score=22.42 Aligned_cols=20 Identities=25% Similarity=0.106 Sum_probs=16.4
Q ss_pred HHHHHHHhhcccccccccCc
Q 034974 12 LLANAFAILNEDRFLAPRRW 31 (77)
Q Consensus 12 L~~NAiaILnE~RFL~kiGw 31 (77)
-++=|||++|.|||....+=
T Consensus 23 aFLlaIa~~n~er~d~e~~E 42 (111)
T d1t98a1 23 SFLLAVATLNGERLDGEMSE 42 (111)
T ss_dssp HHHHHHHHHHHSCCSSCBCH
T ss_pred HHHHHHHHHhhhhhhcccch
Confidence 35669999999999998763
No 3
>d2czvc1 d.58.59.1 (C:3-120) RNase P protein component 2, Rnp2 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=22.38 E-value=8.1 Score=22.89 Aligned_cols=10 Identities=40% Similarity=0.926 Sum_probs=8.6
Q ss_pred ccccccccCc
Q 034974 22 EDRFLAPRRW 31 (77)
Q Consensus 22 E~RFL~kiGw 31 (77)
+++||+++||
T Consensus 108 ~~k~i~~~~~ 117 (118)
T d2czvc1 108 KRKFLAKYGW 117 (118)
T ss_dssp HHHHTGGGTC
T ss_pred HHHHHHHhcC
Confidence 4789999998
No 4
>d1su3a1 a.20.1.2 (A:32-98) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.05 E-value=7.1 Score=21.46 Aligned_cols=13 Identities=8% Similarity=0.102 Sum_probs=9.0
Q ss_pred cccccccCcchhh
Q 034974 23 DRFLAPRRWTLAE 35 (77)
Q Consensus 23 ~RFL~kiGw~~~~ 35 (77)
+.+|.|+|+-..+
T Consensus 4 ~~YL~~fgyl~~~ 16 (67)
T d1su3a1 4 QKYLEKYYNLKND 16 (67)
T ss_dssp HHHHHHHSCCC--
T ss_pred HHHHHHhCCCCCC
Confidence 5789999986543
No 5
>d1l6ja1 a.20.1.2 (A:29-105) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.84 E-value=11 Score=20.91 Aligned_cols=14 Identities=14% Similarity=0.192 Sum_probs=8.6
Q ss_pred cccccccCcchhhh
Q 034974 23 DRFLAPRRWTLAEL 36 (77)
Q Consensus 23 ~RFL~kiGw~~~~~ 36 (77)
+.+|.++||-....
T Consensus 18 ~~yL~~fGYl~~~~ 31 (77)
T d1l6ja1 18 EEYLYRYGYTRVAE 31 (77)
T ss_dssp HHHHHHTTCC----
T ss_pred HHHHHHcCCCCCCC
Confidence 47999999965443
No 6
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]}
Probab=19.94 E-value=56 Score=17.77 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=20.9
Q ss_pred CCcHHHHHHHHHHHHH-HhhHHHHHHH
Q 034974 41 RNTLKGQVIGLIHACQ-FMRLPLILLN 66 (77)
Q Consensus 41 ~~s~K~qii~LI~avr-~mRiPLI~iN 66 (77)
+.++..+++.+++++| -+|-||-++.
T Consensus 2 ~~a~~~e~~~~l~~~~Hdl~npL~~I~ 28 (179)
T d1ixma_ 2 DTALTNELIHLLGHSRHDWMNKLQLIK 28 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhHhhcCHHHHHH
Confidence 4567788899999999 9999986554
No 7
>d2bgxa1 a.20.1.1 (A:180-260) Probable N-acetylmuramoyl-L-alanine amidase YbjR, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=18.62 E-value=24 Score=19.97 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=19.3
Q ss_pred ccccccCcchhhhccCCCCcHHHHHHHHHHHHH-Hhh
Q 034974 24 RFLAPRRWTLAELQAGGRNTLKGQVIGLIHACQ-FMR 59 (77)
Q Consensus 24 RFL~kiGw~~~~~~~~~~~s~K~qii~LI~avr-~mR 59 (77)
.-|+++|++.+.. ....+.-.+|.|.| -+|
T Consensus 26 ~~L~k~GY~i~~~------~~~~~~k~vi~AFQrhFR 56 (81)
T d2bgxa1 26 ELLARYGYDVKPD------MTPREQRRVIMAFQMHFR 56 (81)
T ss_dssp HHHHHHTCCCCTT------CCHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCCCC------CCcHHHHHHHHHHHHHcc
Confidence 4578899976421 12234566788988 776
No 8
>d1slma1 a.20.1.2 (A:16-80) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]}
Probab=14.51 E-value=14 Score=20.03 Aligned_cols=12 Identities=8% Similarity=-0.020 Sum_probs=9.0
Q ss_pred cccccccCcchh
Q 034974 23 DRFLAPRRWTLA 34 (77)
Q Consensus 23 ~RFL~kiGw~~~ 34 (77)
+.+|+++|+-.+
T Consensus 3 ~~YL~~fgyl~~ 14 (65)
T d1slma1 3 QKYLENYYDLKK 14 (65)
T ss_dssp HHHHHHHSCCCC
T ss_pred HHHHHHcCCCCC
Confidence 468999998544
No 9
>d1p42a2 d.14.1.7 (A:128-280) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus [TaxId: 63363]}
Probab=13.04 E-value=35 Score=20.98 Aligned_cols=35 Identities=17% Similarity=0.360 Sum_probs=21.4
Q ss_pred HHHHhhcccccccccCcchhhhccCCCCcHHHHHHHHHHHHH
Q 034974 15 NAFAILNEDRFLAPRRWTLAELQAGGRNTLKGQVIGLIHACQ 56 (77)
Q Consensus 15 NAiaILnE~RFL~kiGw~~~~~~~~~~~s~K~qii~LI~avr 56 (77)
||+.| .++.-+++-|+-.+ +.-+|.|+.++|--..
T Consensus 81 naiVi-~~~~~~n~~~LR~~------~E~vRHKiLD~iGDl~ 115 (147)
T d1p42a2 81 NTLVL-GKDKVYNPEGLRYE------NEPVRHKVFDLIGDLY 115 (147)
T ss_dssp TCEEE-CSSCBCSTTCCSST------THHHHHHHHHHHHHHG
T ss_pred cceee-cccceecccccccc------cccchhhhhhhcccHh
Confidence 44433 55555555554432 4589999999986544
No 10
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=12.56 E-value=45 Score=16.80 Aligned_cols=10 Identities=30% Similarity=0.401 Sum_probs=8.0
Q ss_pred HHHHHHHHHH
Q 034974 44 LKGQVIGLIH 53 (77)
Q Consensus 44 ~K~qii~LI~ 53 (77)
=|.|++||+-
T Consensus 8 grR~~MNLll 17 (39)
T d1q90r_ 8 NKRNIMNLIL 17 (39)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3889999874
Done!