Query 034986
Match_columns 77
No_of_seqs 104 out of 165
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 13:29:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034986.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034986hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p3c_A UDP-3-O-[3-hydroxymyris 28.2 25 0.00085 26.0 1.7 35 15-56 201-235 (274)
2 3uhm_A UDP-3-O-[3-hydroxymyris 26.1 29 0.00098 26.0 1.7 35 15-56 213-247 (299)
3 3p3g_A UDP-3-O-[3-hydroxymyris 25.7 29 0.001 25.9 1.7 35 15-56 214-248 (300)
4 2yib_D RNA-directed RNA polyme 25.7 25 0.00085 29.7 1.4 46 19-64 577-628 (770)
5 1zs4_A Regulatory protein CII; 23.8 12 0.00041 23.2 -0.7 27 11-37 16-42 (83)
6 1lj2_A NSP3-C, nonstructural R 22.9 58 0.002 21.3 2.5 20 41-60 26-46 (110)
7 2pus_A IBDV VP1 RNA-dependant 22.0 40 0.0014 28.8 1.9 46 19-64 594-645 (852)
8 2yi9_A RNA-directed RNA polyme 16.3 48 0.0016 28.1 1.2 46 19-64 577-628 (799)
9 1t98_A KICB protein, chromosom 15.0 62 0.0021 24.3 1.4 21 11-31 29-49 (287)
10 2k89_A PLA2P, PLAP, phospholip 14.7 56 0.0019 20.0 0.9 22 23-53 46-67 (80)
No 1
>3p3c_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; lipid A biosynthesis, lipid A synthesis, LPXC, BAAB sandwich hydrolase; HET: 3P3; 1.25A {Aquifex aeolicus} PDB: 1xxe_A* 2jt2_A* 1p42_A* 1yh8_A* 1yhc_A* 3p76_A* 2ies_A* 2ier_A* 2o3z_A* 2j65_A* 2go3_A* 2go4_A*
Probab=28.18 E-value=25 Score=26.00 Aligned_cols=35 Identities=20% Similarity=0.484 Sum_probs=25.6
Q ss_pred HHHHhhcccccccccCCCCcccccCCCchHHHHHHHHHHHHH
Q 034986 15 NALAIINEDRFLAPRGWSFSEFSVGRTKSLKGQIIGLIYATQ 56 (77)
Q Consensus 15 NAiaILnE~RFL~k~Gw~~~~~~~~~~~s~K~qii~LI~avr 56 (77)
||+.+ ++++.|++-|+-.+ +.-+|.|+.++|--.-
T Consensus 201 NAiV~-~~~~vlN~~gLR~~------dE~vRHKiLD~IGDL~ 235 (274)
T 3p3c_A 201 NTLVL-GKDKVYNPEGLRYE------NEPVRHKVFDLIGDLY 235 (274)
T ss_dssp TCEEE-CSSCBCSTTCCSST------THHHHHHHHHHHHHHG
T ss_pred cEEEE-cCCcccCCCCCcCC------CchhhHHHHHHHHHHH
Confidence 77754 88888888776543 4589999999886554
No 2
>3uhm_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; amidohydrolases, anti-bacterial agents, bacteria, catalytic drug design; HET: RFN; 1.26A {Pseudomonas aeruginosa} PDB: 2ves_A* 3u1y_A* 3p3e_A*
Probab=26.14 E-value=29 Score=25.98 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=25.5
Q ss_pred HHHHhhcccccccccCCCCcccccCCCchHHHHHHHHHHHHH
Q 034986 15 NALAIINEDRFLAPRGWSFSEFSVGRTKSLKGQIIGLIYATQ 56 (77)
Q Consensus 15 NAiaILnE~RFL~k~Gw~~~~~~~~~~~s~K~qii~LI~avr 56 (77)
||+.+ .+++.|++-|+-.+ +.-+|.|+.++|--.-
T Consensus 213 NAiVi-~~~~vlN~~gLRf~------dE~VRHKiLD~IGDLa 247 (299)
T 3uhm_A 213 NAIVV-DENRVLNEDGLRYE------DEFVKHKILDAIGDLY 247 (299)
T ss_dssp TSEEE-CSSSBCCTTCCSST------THHHHHHHHHHHHHHH
T ss_pred ceEEE-cCCcccCCCCccCC------CchhhHHHHHHHHHHH
Confidence 67665 77888887776543 4589999999987554
No 3
>3p3g_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; lipid A biosynthesis, lipid A synthesis, LPXC, BAAB sandwich hydrolase; HET: 3P3 UKW; 1.65A {Escherichia coli} PDB: 3ps1_A* 3ps2_A* 3ps3_A* 3nzk_A*
Probab=25.73 E-value=29 Score=25.95 Aligned_cols=35 Identities=17% Similarity=0.309 Sum_probs=25.8
Q ss_pred HHHHhhcccccccccCCCCcccccCCCchHHHHHHHHHHHHH
Q 034986 15 NALAIINEDRFLAPRGWSFSEFSVGRTKSLKGQIIGLIYATQ 56 (77)
Q Consensus 15 NAiaILnE~RFL~k~Gw~~~~~~~~~~~s~K~qii~LI~avr 56 (77)
|||.+ .+++.|++-|+-.+ +.-+|.|+.++|--.-
T Consensus 214 NAiVi-~~~~vlN~~gLRf~------dE~VRHKiLD~IGDLa 248 (300)
T 3p3g_A 214 CAIVV-DDYRVLNEDGLRFE------DEFVRHKMLDAIGDLF 248 (300)
T ss_dssp TCEEE-CSSSBCSTTCCSST------THHHHHHHHHHHHHHG
T ss_pred ceEEE-cCCcccCCCCCcCC------CchhhHHHHHHHHHHH
Confidence 67765 78888887776543 4589999999987554
No 4
>2yib_D RNA-directed RNA polymerase; transferase, reverse transcriptase, IPNV; 3.80A {Infectious pancreatic necrosis virus}
Probab=25.70 E-value=25 Score=29.66 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=34.1
Q ss_pred hhcccccccccCCCCccccc-CCCchHHHHHHHHHH--HHH-hh--hHHHHH
Q 034986 19 IINEDRFLAPRGWSFSEFSV-GRTKSLKGQIIGLIY--ATQ-YM--RVPLIL 64 (77)
Q Consensus 19 ILnE~RFL~k~Gw~~~~~~~-~~~~s~K~qii~LI~--avr-~m--RiPLI~ 64 (77)
+|+|||+++-.-|++++.+- -...+.-.|+-.+++ |.| ++ -+|+|-
T Consensus 577 VL~eeRl~~S~a~pkg~enk~~~~k~~~~q~Y~~vRyEaLr~vGgw~yP~i~ 628 (770)
T 2yib_D 577 VLENERLIASAAYPKGLENKALARKPGAEIAYQIVRYEAIRLVGGWNNPLLE 628 (770)
T ss_dssp EECHHHHHHHHHSCCCSCSSSGGGCHHHHHHHHHHHHHHHHHTTGGGSHHHH
T ss_pred cCCHHHHHHhhhcCCCcchhhhhcchHHHHHHHHHHHHHHHHHcccccHHHH
Confidence 78999999999998865431 223566788889998 888 65 467764
No 5
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=23.83 E-value=12 Score=23.17 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=23.3
Q ss_pred HHHHHHHHhhcccccccccCCCCcccc
Q 034986 11 LLLANALAIINEDRFLAPRGWSFSEFS 37 (77)
Q Consensus 11 lL~~NAiaILnE~RFL~k~Gw~~~~~~ 37 (77)
-.++|++|.++.+++=+.+||+.|+-+
T Consensus 16 s~iL~~La~~gQ~~vAe~~GvdeStIS 42 (83)
T 1zs4_A 16 SALLNKIAMLGTEKTAEAVGVDKSQIS 42 (83)
T ss_dssp HHHHHHHHHHCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHhCCCHHHHh
Confidence 357899999999999999999887653
No 6
>1lj2_A NSP3-C, nonstructural RNA-binding protein 34, NS34, NCVP4; NSP3, homodimer, translation, mRNA, closed loop, coiled coil; 2.38A {Simian rotavirus A} SCOP: h.1.13.2
Probab=22.89 E-value=58 Score=21.31 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=17.4
Q ss_pred CchHHHHHHHHHHHHH-hhhH
Q 034986 41 TKSLKGQIIGLIYATQ-YMRV 60 (77)
Q Consensus 41 ~~s~K~qii~LI~avr-~mRi 60 (77)
+-..|+||..|++|+. ++|.
T Consensus 26 E~dlq~ki~slisSiEw~l~S 46 (110)
T 1lj2_A 26 ERDLQNKIGSLTSSIEWYLRS 46 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 3578999999999999 9884
No 7
>2pus_A IBDV VP1 RNA-dependant RNA polymerase; RNA polymerase motifs, transferase; 2.40A {Infectious bursal disease virus} PDB: 2qj1_A 2r70_A 2r72_A 2pgg_A
Probab=21.96 E-value=40 Score=28.76 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=34.6
Q ss_pred hhcccccccccCCCCcccc-cCCCchHHHHHHHHHH--HHH-hh--hHHHHH
Q 034986 19 IINEDRFLAPRGWSFSEFS-VGRTKSLKGQIIGLIY--ATQ-YM--RVPLIL 64 (77)
Q Consensus 19 ILnE~RFL~k~Gw~~~~~~-~~~~~s~K~qii~LI~--avr-~m--RiPLI~ 64 (77)
+|+|||+++-.-|+....+ .-...+.-.|+-.+++ |.| ++ -+|+|-
T Consensus 594 VL~~eRl~~S~a~pkg~enk~~~~k~~~~~~Y~~vRyEaLrmvGgw~yP~i~ 645 (852)
T 2pus_A 594 VLDKERLFCSAAYPKGVENKSLKSKVGIEQAYKVVRYEALRLVGGWNYPLLN 645 (852)
T ss_dssp EECHHHHHHHHHSCCCCCCCSSCCSSHHHHHHHHHHHHHHHHHTGGGSHHHH
T ss_pred ccCHHHHHHHhhcCCCccchhhhcchHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 7899999999999886544 2224567788999999 888 65 567764
No 8
>2yi9_A RNA-directed RNA polymerase; transferase, reverse transcriptase, IPNV; 2.20A {Infectious pancreatic necrosis virus} PDB: 2yi8_A 2yia_A 2yib_A
Probab=16.32 E-value=48 Score=28.08 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=30.8
Q ss_pred hhcccccccccCCCCccccc-CCCchHHHHHHHHHH--HHH-hh--hHHHHH
Q 034986 19 IINEDRFLAPRGWSFSEFSV-GRTKSLKGQIIGLIY--ATQ-YM--RVPLIL 64 (77)
Q Consensus 19 ILnE~RFL~k~Gw~~~~~~~-~~~~s~K~qii~LI~--avr-~m--RiPLI~ 64 (77)
+|+|||+++-.-|+.+..+. -.+...-.|+-.+++ |.| ++ -+|+|-
T Consensus 577 VL~~eRl~~S~a~pkg~enkd~~~~~~~~qlY~~vRyEaLr~vGgw~yP~Ie 628 (799)
T 2yi9_A 577 VLENERLIASAAYPKGLENKALARKPGAEIAYQIVRYEAIRLVGGWNNPLLE 628 (799)
T ss_dssp EECHHHHHHHHHSCCCCCCHHHHTSTTHHHHHHHHHHHHHHHTTGGGSHHHH
T ss_pred cCCHHHHHHHhhcCCCcchhhhhhhhHHHHHHHHHHHHHHHHhcCcCchhHH
Confidence 78999999999998854320 011233378888888 888 55 467663
No 9
>1t98_A KICB protein, chromosome partition protein MUKF; winged helix, helix-turn helix, domain swapped, condensin; 2.90A {Escherichia coli} SCOP: a.4.5.65 a.47.6.1
Probab=15.03 E-value=62 Score=24.26 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=16.9
Q ss_pred HHHHHHHHhhcccccccccCC
Q 034986 11 LLLANALAIINEDRFLAPRGW 31 (77)
Q Consensus 11 lL~~NAiaILnE~RFL~k~Gw 31 (77)
|-++=|||+||.|||....|=
T Consensus 29 LaFLlaia~l~~er~d~e~~E 49 (287)
T 1t98_A 29 LSFLLAVATLNGERLDGEMSE 49 (287)
T ss_dssp HHHHHHHHHHHHSCCSSCBCH
T ss_pred HHHHHHHHHHcchhhhccccc
Confidence 345669999999999988763
No 10
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=14.73 E-value=56 Score=20.03 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=15.2
Q ss_pred cccccccCCCCcccccCCCchHHHHHHHHHH
Q 034986 23 DRFLAPRGWSFSEFSVGRTKSLKGQIIGLIY 53 (77)
Q Consensus 23 ~RFL~k~Gw~~~~~~~~~~~s~K~qii~LI~ 53 (77)
+||+.|-+++. +...||+++|.
T Consensus 46 qkFi~~n~Lp~---------~yldqI~~FI~ 67 (80)
T 2k89_A 46 YNFLQKNDLNP---------MFLDQVAKFII 67 (80)
T ss_dssp HHHHHHHTCCT---------THHHHHHHHHH
T ss_pred HHHHHHcCCCH---------HHHHHHHHHHH
Confidence 57777766643 67778888774
Done!