BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034991
(77 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3B8G7|IR3IP_XENLA Immediate early response 3-interacting protein 1 OS=Xenopus
laevis GN=ier3ip1 PE=3 SV=1
Length = 82
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 3 LWTLLEGFLLLANALAIINEDRFLAPRGWSFSE--FSVGRTKSLKGQIIGLIYATQ-YMR 59
L+TLL+ LL NA+A+++E+RFL+ GW G +K Q++ LI + + MR
Sbjct: 5 LYTLLQAALLCVNAVAVLHEERFLSKIGWGVDHGIGGFGEEPGMKSQLMNLIRSVRTVMR 64
Query: 60 VPLILLNAICIVVKLVSG 77
VPLI++N++ IV+ L+ G
Sbjct: 65 VPLIIVNSVTIVLLLLFG 82
>sp|Q4VBI2|IR3IP_DANRE Immediate early response 3-interacting protein 1 OS=Danio rerio
GN=ier3ip1 PE=3 SV=1
Length = 82
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 3 LWTLLEGFLLLANALAIINEDRFLAPRGWSFSE--FSVGRTKSLKGQIIGLIYATQ-YMR 59
L+ L++ +L NA+A+++E+RFL+ GW + G +K Q++ LI + + MR
Sbjct: 5 LYALIQTAILFTNAIAVLHEERFLSKIGWGAEQGVGGFGDDPGIKAQLLNLIRSVRTVMR 64
Query: 60 VPLILLNAICIVVKLVSG 77
VPLI +N++CIV+ L+ G
Sbjct: 65 VPLIAVNSVCIVLLLLFG 82
>sp|Q9Y5U9|IR3IP_HUMAN Immediate early response 3-interacting protein 1 OS=Homo sapiens
GN=IER3IP1 PE=1 SV=1
Length = 82
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 3 LWTLLEGFLLLANALAIINEDRFLAPRGWSFSE--FSVGRTKSLKGQIIGLIYATQ-YMR 59
L++LL+ LL NA+A+++E+RFL GW + G +K Q++ LI + + MR
Sbjct: 5 LYSLLQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLMNLIRSVRTVMR 64
Query: 60 VPLILLNAICIVVKLVSG 77
VPLI++N+I IV+ L+ G
Sbjct: 65 VPLIIVNSIAIVLLLLFG 82
>sp|Q1JQC2|IR3IP_BOVIN Immediate early response 3-interacting protein 1 OS=Bos taurus
GN=IER3IP1 PE=3 SV=1
Length = 82
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 3 LWTLLEGFLLLANALAIINEDRFLAPRGWSFSE--FSVGRTKSLKGQIIGLIYATQ-YMR 59
L++LL+ LL NA+A+++E+RFL GW + G +K Q++ LI + + MR
Sbjct: 5 LYSLLQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLMNLIRSVRTVMR 64
Query: 60 VPLILLNAICIVVKLVSG 77
VPLI++N+I IV+ L+ G
Sbjct: 65 VPLIIVNSIAIVLLLLFG 82
>sp|P85007|IR3IP_RAT Immediate early response 3-interacting protein 1 OS=Rattus
norvegicus GN=Ier3ip1 PE=2 SV=1
Length = 82
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 3 LWTLLEGFLLLANALAIINEDRFLAPRGWSFSE--FSVGRTKSLKGQIIGLIYATQ-YMR 59
L++L++ LL NA+A+++E+RFL GW + G +K Q++ LI + + MR
Sbjct: 5 LYSLMQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLLNLIRSVRTVMR 64
Query: 60 VPLILLNAICIVVKLVSG 77
VPLI++N+I IV+ L+ G
Sbjct: 65 VPLIIVNSITIVLLLLFG 82
>sp|Q9CR20|IR3IP_MOUSE Immediate early response 3-interacting protein 1 OS=Mus musculus
GN=Ier3ip1 PE=2 SV=1
Length = 82
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 3 LWTLLEGFLLLANALAIINEDRFLAPRGWSFSE--FSVGRTKSLKGQIIGLIYATQ-YMR 59
L++L++ LL NA+A+++E+RFL GW + G +K Q++ LI + + MR
Sbjct: 5 LYSLMQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLMNLIRSVRTVMR 64
Query: 60 VPLILLNAICIVVKLVSG 77
VPLI++N+I IV+ L+ G
Sbjct: 65 VPLIIVNSITIVLLLLFG 82
>sp|O13825|YOS1_SCHPO Protein transport protein yos1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=yos1 PE=3 SV=1
Length = 81
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 2 GLWTLLEGFLLLANALAIINEDRFLAPRGWSFSEFSVG---RTKSLKGQIIGLIYATQ-Y 57
G +L LLL NA+AI++EDRFL GWS S ++G R ++K +I+ LI A +
Sbjct: 3 GFGNILYVTLLLLNAVAILSEDRFLGRIGWSQSA-ALGFGDRQDTIKSRILHLIRAIRTV 61
Query: 58 MRVPLILLNAICIVVKLVSG 77
M PLI +N I IV LV G
Sbjct: 62 MTFPLIAINTIVIVYNLVLG 81
>sp|Q3E834|YOS1_YEAST Protein transport protein YOS1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YOS1 PE=1 SV=1
Length = 85
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 2 GLWTLLEGFLLLANALAIINEDRFLAPRGWSFSEFSV---GRTK-SLKGQIIGLIYATQ- 56
GL L LLL NA+A+++E+RFL G S G+ + + K +++ LI A Q
Sbjct: 5 GLGRLFYVILLLINAVAVLSEERFLRRIGLGRSNDETPVFGQDQNTTKSKVVQLIGAVQT 64
Query: 57 YMRVPLILLNAICIVVKLVSG 77
+R+PLI +N + IV +L+ G
Sbjct: 65 LLRIPLIGINILVIVYELLLG 85
>sp|Q5HNB7|PCKA_STAEQ Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=pckA PE=3
SV=1
Length = 530
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 21/78 (26%)
Query: 12 LLANALAIINEDRFLAPRGWSFSEFSVGR---------------------TKSLKGQIIG 50
LL N + I + D +L GW+ ++ VGR TK +K G
Sbjct: 411 LLGNLIDIHDVDVYLVNTGWTGGKYGVGRRISLHYTREMVDQAISGKLKNTKYIKDDTFG 470
Query: 51 LIYATQYMRVPLILLNAI 68
L Q VP +LN I
Sbjct: 471 LNIPVQIDSVPTTILNPI 488
>sp|Q8CS25|PCKA_STAES Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=pckA PE=3 SV=1
Length = 530
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 21/78 (26%)
Query: 12 LLANALAIINEDRFLAPRGWSFSEFSVGR---------------------TKSLKGQIIG 50
LL N + I + D +L GW+ ++ +GR TK +K G
Sbjct: 411 LLGNLIDIHDVDVYLVNTGWTGGKYGIGRRISLHYTREMVDQAISGKLKNTKYIKDDTFG 470
Query: 51 LIYATQYMRVPLILLNAI 68
L Q VP +LN I
Sbjct: 471 LNIPVQIDSVPTTILNPI 488
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.144 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,234,222
Number of Sequences: 539616
Number of extensions: 780667
Number of successful extensions: 1902
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1889
Number of HSP's gapped (non-prelim): 10
length of query: 77
length of database: 191,569,459
effective HSP length: 48
effective length of query: 29
effective length of database: 165,667,891
effective search space: 4804368839
effective search space used: 4804368839
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)